BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Zingiber24_contig00018709
         (1628 letters)

Database: ./nr 
           37,332,560 sequences; 13,225,080,153 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

ref|XP_002278228.1| PREDICTED: DNA-directed RNA polymerase I sub...   309   3e-81
emb|CBI35920.3| unnamed protein product [Vitis vinifera]              298   6e-78
ref|XP_006350715.1| PREDICTED: uncharacterized protein LOC102603...   278   5e-72
ref|XP_004240985.1| PREDICTED: uncharacterized protein LOC101267...   278   6e-72
ref|XP_004979718.1| PREDICTED: DNA-directed RNA polymerase I sub...   276   2e-71
gb|AFW60354.1| A49-like RNA polymerase I associated factor famil...   274   7e-71
ref|NP_001150836.1| LOC100284469 [Zea mays] gi|195642286|gb|ACG4...   273   2e-70
ref|XP_003577359.1| PREDICTED: DNA-directed RNA polymerase I sub...   270   1e-69
gb|EMT03118.1| DNA-directed RNA polymerase I subunit rpa49 [Aegi...   270   1e-69
dbj|BAJ90975.1| predicted protein [Hordeum vulgare subsp. vulgare]    268   7e-69
dbj|BAJ94402.1| predicted protein [Hordeum vulgare subsp. vulgar...   268   7e-69
gb|EAY88445.1| hypothetical protein OsI_09911 [Oryza sativa Indi...   265   4e-68
gb|EXB29690.1| DNA-directed RNA polymerase I subunit rpa49 [Moru...   261   8e-67
ref|XP_006663046.1| PREDICTED: DNA-directed RNA polymerase I sub...   256   2e-65
ref|XP_006465974.1| PREDICTED: uncharacterized protein LOC102616...   256   3e-65
ref|XP_006426597.1| hypothetical protein CICLE_v10025597mg [Citr...   256   3e-65
gb|EOY23991.1| DNA-directed RNA polymerase I subunit rpa49, puta...   255   3e-65
ref|XP_003546428.1| PREDICTED: DNA-directed RNA polymerase I sub...   255   3e-65
ref|XP_004141689.1| PREDICTED: uncharacterized protein LOC101221...   250   1e-63
ref|NP_001068274.1| Os11g0615100 [Oryza sativa Japonica Group] g...   247   1e-62

>ref|XP_002278228.1| PREDICTED: DNA-directed RNA polymerase I subunit RPA49 [Vitis
            vinifera]
          Length = 421

 Score =  309 bits (791), Expect = 3e-81
 Identities = 182/405 (44%), Positives = 246/405 (60%), Gaps = 7/405 (1%)
 Frame = -1

Query: 1544 KKRKWKRVNVAMEGVSETADHVAPIVGYFPSGFDPHG----HANGDPKIKVFRNKRRPNR 1377
            K++K K VNV ME V E  + + P+VGYFPSGFDPH      ++  P +KVFRNK R NR
Sbjct: 20   KRKKKKHVNVKMEVVHEHPEKIPPLVGYFPSGFDPHKPQDHESDPPPAVKVFRNKARANR 79

Query: 1376 LELXXXXXXXXXXXVGRSYAGEAAVPQICNYAVGVLDKESQTLKIVPIASNKILRLEPRL 1197
            L+L           VG SY+GEAA  Q+C YA+GVLDKE+QTLKIVPIASNKI RLEPR+
Sbjct: 80   LQLVVSPNDSKVNFVGTSYSGEAASAQVCTYALGVLDKETQTLKIVPIASNKIFRLEPRV 139

Query: 1196 KGNSLLETEVSEGLAEESVGTNKVERKVRELTLMYGTXXXXXXXXXXXSFFSQRNDASTD 1017
             G+     E S  L  E     K  R +R+LT +YGT           +  +Q++D  + 
Sbjct: 140  GGSDASVDEPSSLLKGEQTAEEKAGR-MRDLTNLYGTKKSITQAKKLQA-LNQKDDPRSQ 197

Query: 1016 EHINNINHETDEGNDVLEDAVESIPRNIPPHDLSADTPDKAYHLDEIIPIIERDDLFDIL 837
            + ++    E     + LE       RNIPP+D +A TP +AY LD+II   E D L DIL
Sbjct: 198  KDLDRKLKEVVINKEALESTSAHSARNIPPYDDTATTPQEAYRLDKIIFKGEWDYLLDIL 257

Query: 836  EALESGTDISPKSYPTFVYNRRHKLREIKDQKEKGELACILSYISHLCHFWDRQKHE--H 663
            + L++G ++   +Y +FV NR  KL+E++D+ EK  LACI SYI+HL  + DR   +   
Sbjct: 258  DLLQAGVEVESSAYSSFVCNRIQKLKELEDEGEKTTLACIFSYINHLLKYKDRNSMDASS 317

Query: 662  FEHLKIPRASYQNFTRTF-LDPNSIKLTAEKKELMIGYILVLTLFVDSFQTDPTDIAKDL 486
             +H KIP    Q F+  F LD +S +LT EKK+L+I Y+LVLTL+ D F+TDP+DIA+DL
Sbjct: 318  AKHHKIPGILNQKFSSMFALDSDSRRLTEEKKDLLISYVLVLTLYADEFRTDPSDIARDL 377

Query: 485  KMTTMSLKPYFVQLGCKGKHVFNKPTIWNLTAPLRLPEIIKTSRR 351
            +M+ + L+ +F  LGCK     NK T+  L  PL  P + +  RR
Sbjct: 378  RMSAVKLRAHFEHLGCKLVSQ-NKVTMATLPVPLTFPRLRQKRRR 421


>emb|CBI35920.3| unnamed protein product [Vitis vinifera]
          Length = 391

 Score =  298 bits (762), Expect = 6e-78
 Identities = 176/394 (44%), Positives = 238/394 (60%), Gaps = 7/394 (1%)
 Frame = -1

Query: 1511 MEGVSETADHVAPIVGYFPSGFDPHG----HANGDPKIKVFRNKRRPNRLELXXXXXXXX 1344
            ME V E  + + P+VGYFPSGFDPH      ++  P +KVFRNK R NRL+L        
Sbjct: 1    MEVVHEHPEKIPPLVGYFPSGFDPHKPQDHESDPPPAVKVFRNKARANRLQLVVSPNDSK 60

Query: 1343 XXXVGRSYAGEAAVPQICNYAVGVLDKESQTLKIVPIASNKILRLEPRLKGNSLLETEVS 1164
               VG SY+GEAA  Q+C YA+GVLDKE+QTLKIVPIASNKI RLEPR+ G+     E S
Sbjct: 61   VNFVGTSYSGEAASAQVCTYALGVLDKETQTLKIVPIASNKIFRLEPRVGGSDASVDEPS 120

Query: 1163 EGLAEESVGTNKVERKVRELTLMYGTXXXXXXXXXXXSFFSQRNDASTDEHINNINHETD 984
              L  E     K  R +R+LT +YGT           +  +Q++D  + + ++    E  
Sbjct: 121  SLLKGEQTAEEKAGR-MRDLTNLYGTKKSITQAKKLQA-LNQKDDPRSQKDLDRKLKEVV 178

Query: 983  EGNDVLEDAVESIPRNIPPHDLSADTPDKAYHLDEIIPIIERDDLFDILEALESGTDISP 804
               + LE       RNIPP+D +A TP +AY LD+II   E D L DIL+ L++G ++  
Sbjct: 179  INKEALESTSAHSARNIPPYDDTATTPQEAYRLDKIIFKGEWDYLLDILDLLQAGVEVES 238

Query: 803  KSYPTFVYNRRHKLREIKDQKEKGELACILSYISHLCHFWDRQKHE--HFEHLKIPRASY 630
             +Y +FV NR  KL+E++D+ EK  LACI SYI+HL  + DR   +    +H KIP    
Sbjct: 239  SAYSSFVCNRIQKLKELEDEGEKTTLACIFSYINHLLKYKDRNSMDASSAKHHKIPGILN 298

Query: 629  QNFTRTF-LDPNSIKLTAEKKELMIGYILVLTLFVDSFQTDPTDIAKDLKMTTMSLKPYF 453
            Q F+  F LD +S +LT EKK+L+I Y+LVLTL+ D F+TDP+DIA+DL+M+ + L+ +F
Sbjct: 299  QKFSSMFALDSDSRRLTEEKKDLLISYVLVLTLYADEFRTDPSDIARDLRMSAVKLRAHF 358

Query: 452  VQLGCKGKHVFNKPTIWNLTAPLRLPEIIKTSRR 351
              LGCK     NK T+  L  PL  P + +  RR
Sbjct: 359  EHLGCKLVSQ-NKVTMATLPVPLTFPRLRQKRRR 391


>ref|XP_006350715.1| PREDICTED: uncharacterized protein LOC102603859 [Solanum tuberosum]
          Length = 431

 Score =  278 bits (711), Expect = 5e-72
 Identities = 173/431 (40%), Positives = 244/431 (56%), Gaps = 10/431 (2%)
 Frame = -1

Query: 1613 KETKSRRDRQAMAGATSVAGSGSKKRKWKRVN---VAMEGVSETADHVAPIVGYFPSGFD 1443
            KE K+  D+        +  S  KK K K+     V ME ++E  ++++PIVGYFPSG+D
Sbjct: 5    KEKKNLEDQNPSEVEGKMGESTKKKTKKKKKETHTVTMETIAENPNNISPIVGYFPSGYD 64

Query: 1442 PHGHANG---DPKIKVFRNKRRPNRLELXXXXXXXXXXXVGRSYAGEAAVPQICNYAVGV 1272
            P  + N    +   K++RN +R NRL+L           VG +Y+GEA   Q+C Y++G+
Sbjct: 65   PLTNNNDGVEELSTKLYRNAKRNNRLQLVVSPNGSQVDFVGTNYSGEATSAQLCTYSLGI 124

Query: 1271 LDKESQTLKIVPIASNKILRLEPRLKGNSLLETEVSEGLAEESVGTNKVERKVRELTLMY 1092
            LDKE+QTLKIVPIA+NKI+RLEPR++G    ETE  +   +E     + + K+RELT  Y
Sbjct: 125  LDKETQTLKIVPIAANKIIRLEPRVRGLEAQETEDPDTAKQELTAEERND-KMRELTQKY 183

Query: 1091 GTXXXXXXXXXXXSFFSQRNDASTDEHINNINHETDEGNDVLEDAVES-IPRNIPPHDLS 915
             +           S   Q +  + +E   NI    ++  + LE AV +   RNIPPHDL 
Sbjct: 184  SSKKTIRQARKLDSLRQQEDTGNQEEFDRNIAGAINK--EALEVAVATDSARNIPPHDLD 241

Query: 914  ADTPDKAYHLDEIIPIIERDDLFDILEALESGTDISPKSYPTFVYNRRHKLREIKDQKEK 735
            A  P  AY LD II   E D L DI E  E+G +++P  YP+FV NR +KL  I+D+ EK
Sbjct: 242  ATIPQLAYPLDRIISKGEWDFLLDIFELTEAGAEMTPDLYPSFVCNRSYKLEHIQDEDEK 301

Query: 734  GELACILSYISHLCHFWDRQKHE---HFEHLKIPRASYQNFTRTFLDPNSIKLTAEKKEL 564
              LA I S+I+HL  F D+   +     +H K P    Q FT  F   +S +L  EK  L
Sbjct: 302  KRLAGIFSFITHLVKFKDKHSMDGVSSAKHHKFPGILSQKFTSMFSISDSKRLPEEKVTL 361

Query: 563  MIGYILVLTLFVDSFQTDPTDIAKDLKMTTMSLKPYFVQLGCKGKHVFNKPTIWNLTAPL 384
            +I Y+LVLTLF D F++DP+DIAKDL++  ++L+P++  LGCK     N   +  L  PL
Sbjct: 362  LINYVLVLTLFADDFRSDPSDIAKDLRINAVALRPFYEYLGCKLVREKN-VVLATLPVPL 420

Query: 383  RLPEIIKTSRR 351
              P + +  RR
Sbjct: 421  VFPSVRRKRRR 431


>ref|XP_004240985.1| PREDICTED: uncharacterized protein LOC101267531 [Solanum
            lycopersicum]
          Length = 410

 Score =  278 bits (710), Expect = 6e-72
 Identities = 165/405 (40%), Positives = 238/405 (58%), Gaps = 6/405 (1%)
 Frame = -1

Query: 1547 SKKRKWKRVNVAMEGVSETADHVAPIVGYFPSGFDPHGHANG---DPKIKVFRNKRRPNR 1377
            SKK+K +   V ME ++E  ++++P+VGYFPSG+DP  + N    +   K++RN RR NR
Sbjct: 9    SKKKKKETHTVTMETIAENPNNISPMVGYFPSGYDPLRNTNDGVEELSTKLYRNVRRNNR 68

Query: 1376 LELXXXXXXXXXXXVGRSYAGEAAVPQICNYAVGVLDKESQTLKIVPIASNKILRLEPRL 1197
            L++           VG +Y+GEA   Q+C Y++G+LDKE+QTLKIVPIA+NKI+RLEPR+
Sbjct: 69   LQVVVSPYGSQVDFVGTNYSGEATSAQLCTYSLGILDKETQTLKIVPIAANKIIRLEPRV 128

Query: 1196 KGNSLLETEVSEGLAEESVGTNKVERKVRELTLMYGTXXXXXXXXXXXSFFSQRNDASTD 1017
            +G+ + + E  +   +E     + + K+RELT MY +           S   Q +  + +
Sbjct: 129  RGSEVPDAEDPDTAKQELTAEERND-KMRELTQMYSSKKSIRQARKLDSLRQQEDTGNQE 187

Query: 1016 EHINNINHETDEGNDVLEDAVESIPRNIPPHDLSADTPDKAYHLDEIIPIIERDDLFDIL 837
            E   NI    ++    +  A +S  RNIPPHDL A  P  AY LD II   E D L DI 
Sbjct: 188  EFDRNIAGAINKEALEVTVATDSA-RNIPPHDLDATIPQLAYPLDRIISKGEWDFLLDIF 246

Query: 836  EALESGTDISPKSYPTFVYNRRHKLREIKDQKEKGELACILSYISHLCHFWDRQKHE--- 666
            E  E+G +++P  YP+FV NR +KL  I+D+ EK  LA ILS+I+HL  F D+   +   
Sbjct: 247  ELTEAGAEMTPDLYPSFVRNRSYKLEHIQDEDEKKRLAGILSFITHLVKFKDKHSMDGVS 306

Query: 665  HFEHLKIPRASYQNFTRTFLDPNSIKLTAEKKELMIGYILVLTLFVDSFQTDPTDIAKDL 486
              +H K P    Q FT  F   +S +L  EK  L+I Y+LVLTLF D F++DP+DIAKDL
Sbjct: 307  SAKHHKFPGILSQKFTSMFSISDSKRLPEEKVTLLINYVLVLTLFADDFRSDPSDIAKDL 366

Query: 485  KMTTMSLKPYFVQLGCKGKHVFNKPTIWNLTAPLRLPEIIKTSRR 351
            ++  ++L+P++  LGCK     N   +  L  PL  P + +  RR
Sbjct: 367  RINAVALRPFYEYLGCKLVREKN-IVLATLPVPLVFPGVRRKRRR 410


>ref|XP_004979718.1| PREDICTED: DNA-directed RNA polymerase I subunit rpa49-like [Setaria
            italica]
          Length = 520

 Score =  276 bits (706), Expect = 2e-71
 Identities = 181/437 (41%), Positives = 240/437 (54%), Gaps = 26/437 (5%)
 Frame = -1

Query: 1577 AGATSVAGSGSKKRKWKRVNVAMEGV---SETADHVAPIVGYFPSGFDPHGHA------- 1428
            A   + A + +K      +NV ++       TA   AP V YFP+G+DP   A       
Sbjct: 93   ASTEAAADASTKAAVDASLNVTVDASLTGGRTAAAPAPAVAYFPTGYDPLAAAAVAAEED 152

Query: 1427 NGDPKIKVFRNKRRPNRLELXXXXXXXXXXXVGRSYAGEAAVPQICNYAVGVLDKESQTL 1248
               P  ++FR+++ P  ++L           VGRSYAGEAA PQ+C YA+GVLDK S TL
Sbjct: 153  ESAPNARLFRHEKHPTWVDLVVGSSGGGPDFVGRSYAGEAATPQLCEYALGVLDKASGTL 212

Query: 1247 KIVPIASNKILRLEPRLKGNSLLETEVSEGLAEESVGTNKVERKVRELTLMYGTXXXXXX 1068
            ++VPIA+NKILRLEP L+      ++ SE  +E        E KV++LT+MYGT      
Sbjct: 213  RVVPIAANKILRLEPHLEVQQPAHSQHSEVASEAGSVAGNDELKVQDLTMMYGTKTDRDK 272

Query: 1067 XXXXXSFFSQRNDASTDEHIN--NINHETDEGNDVLEDAVESIPRNIPPHDLSADTPDKA 894
                 S   QRND S  E I+    N  T++  + +      I RNIPP+D +ADT +KA
Sbjct: 273  DNKWRSLNEQRNDPSAYEDIDLGTSNVHTNDNQEPV------IVRNIPPYDPTADTSEKA 326

Query: 893  YHLDEIIPIIERDDLFDILEALESGTDISPKSYPTFVYNRRHKLREIKDQKEKGELACIL 714
            Y LDEIIP   R  L +I++  ESG  IS K Y +FV NR  KL+E++ Q +K  LA IL
Sbjct: 327  YLLDEIIPKNMRQHLLEIVDHFESG-QISSKGYSSFVSNRVQKLQELQGQ-DKERLAWIL 384

Query: 713  SYISHLCHFWDR----QKHEHFEHLK---------IPRASYQNFTRTFLDPNSIKLTAEK 573
            SYI HL   ++R     KH H +H K          P A Y+N    F +P S  +++EK
Sbjct: 385  SYIQHLLSLYERNGCMSKH-HRKHRKENKANHGPGTPLAVYRNLLLIFTEPGSSSMSSEK 443

Query: 572  KELMIGYILVLTLFVDSFQTDPTDIAKDLKMTTMSLKPYFVQLGCKGKHV-FNKPTIWNL 396
             EL+I YILVLTLF D F++DP DI  DLKMT   LKPY+ QLGCK       K T   L
Sbjct: 444  NELLINYILVLTLFADDFRSDPKDICADLKMTRQMLKPYYDQLGCKSVSAGAFKSTFMTL 503

Query: 395  TAPLRLPEIIKTSRRNK 345
             APL  P+ +   +R +
Sbjct: 504  PAPLNFPQDVTRRKRRR 520


>gb|AFW60354.1| A49-like RNA polymerase I associated factor family protein [Zea mays]
          Length = 458

 Score =  274 bits (701), Expect = 7e-71
 Identities = 182/442 (41%), Positives = 242/442 (54%), Gaps = 18/442 (4%)
 Frame = -1

Query: 1616 KKETKSRRDRQAMAGATSVAGSGSKKRKWKRVNVAMEGVSETADHVAPIVGYFPSGFDPH 1437
            KK+  S++ + A    T+V    S           M G S  A   AP+VGYFPSG+DP 
Sbjct: 35   KKKKHSKKHKAASDAPTNVTVDAS----------LMGGSSYVA--AAPVVGYFPSGYDPL 82

Query: 1436 GHANGD---PKIKVFRNKRRPNRLELXXXXXXXXXXXVGRSYAGEAAVPQICNYAVGVLD 1266
              A G    P  ++FR+++ P  ++L           VGRSYAGEAAVPQ+C+YA+GVLD
Sbjct: 83   TTAAGAESAPGTQLFRHEKHPTWVDLVVRSPGGGHDFVGRSYAGEAAVPQVCDYALGVLD 142

Query: 1265 KESQTLKIVPIASNKILRLEPRLKGNSLLETEVSEGLAEESVGTNKVERKVRELTLMYGT 1086
            K S TL+IVPIA  KILRLEP L+      ++ SE  +E +      E KV++LT+MYG 
Sbjct: 143  KASGTLRIVPIAGKKILRLEPHLEVQHPAHSQHSEVASEAASAAGNDELKVQDLTMMYGA 202

Query: 1085 XXXXXXXXXXXSFFSQRNDASTDEHIN-NINHETDEGNDVLEDAVESIPRNIPPHDLSAD 909
                       S   QRND S  E I+  I+      ND  E     + RNIPP+D +AD
Sbjct: 203  KTDRDKDNKWRSLKEQRNDPSAYEDIDLGISETNVNANDRQEPV---LVRNIPPYDPTAD 259

Query: 908  TPDKAYHLDEIIPIIERDDLFDILEALESGTDISPKSYPTFVYNRRHKLREIKDQKEKGE 729
            T + AY LDEIIP   R+ L +I+   ESG +IS K Y +FV  R HKL+E++ + +K  
Sbjct: 260  TSENAYLLDEIIPKSMREHLLEIVRHFESG-EISSKGYGSFVSKRVHKLKELQGE-DKKR 317

Query: 728  LACILSYISHLCHF-----------WDRQKHEHFEH-LKIPRASYQNFTRTFLDPNSIKL 585
             A ILSYI HL              W  +      H    P+A Y+     F +P S  +
Sbjct: 318  FAWILSYIQHLLSLLARNGSMSNRKWKGRNENQISHGPATPQAVYRRLLFMFTEPGSSVM 377

Query: 584  TAEKKELMIGYILVLTLFVDSFQTDPTDIAKDLKMTTMSLKPYFVQLGCKG--KHVFNKP 411
              EKKEL+  YILVLTLF D F+++P+DI +DLKMT  +LKPY+ QLGCK   +  F K 
Sbjct: 378  PTEKKELLTNYILVLTLFADDFRSNPSDICEDLKMTRQNLKPYYDQLGCKSVTEGAF-KS 436

Query: 410  TIWNLTAPLRLPEIIKTSRRNK 345
            T   L APL+ P+ +   RR +
Sbjct: 437  TFMTLPAPLKFPKEVTRKRRRQ 458


>ref|NP_001150836.1| LOC100284469 [Zea mays] gi|195642286|gb|ACG40611.1| A49-like RNA
            polymerase I associated factor family protein [Zea mays]
          Length = 442

 Score =  273 bits (697), Expect = 2e-70
 Identities = 181/442 (40%), Positives = 241/442 (54%), Gaps = 18/442 (4%)
 Frame = -1

Query: 1616 KKETKSRRDRQAMAGATSVAGSGSKKRKWKRVNVAMEGVSETADHVAPIVGYFPSGFDPH 1437
            KK+  S++ + A    T+V    S           M G S  A   AP+VGYFPSG+DP 
Sbjct: 19   KKKKHSKKHKAASDAPTNVTVDAS----------LMGGSSYVA--AAPVVGYFPSGYDPL 66

Query: 1436 GHANGD---PKIKVFRNKRRPNRLELXXXXXXXXXXXVGRSYAGEAAVPQICNYAVGVLD 1266
              A G    P  ++FR+++ P  ++L           VGRSYAGEAAVPQ+C+YA+GVLD
Sbjct: 67   TTAAGAESAPGTQLFRHEKHPTWVDLVVRSPGGGHDFVGRSYAGEAAVPQVCDYALGVLD 126

Query: 1265 KESQTLKIVPIASNKILRLEPRLKGNSLLETEVSEGLAEESVGTNKVERKVRELTLMYGT 1086
            K S TL+IVPIA  KILRLEP L+      ++ SE  +E +      E KV++LT+MYG 
Sbjct: 127  KASGTLRIVPIAGKKILRLEPHLEVQHPAHSQHSEVASEAASAAGNDELKVQDLTMMYGA 186

Query: 1085 XXXXXXXXXXXSFFSQRNDASTDEHIN-NINHETDEGNDVLEDAVESIPRNIPPHDLSAD 909
                       S   QRND S  E I+  I+      ND  E     + RNIPP+D +AD
Sbjct: 187  KTDRDKDNKWRSLKEQRNDPSAYEDIDLGISETNVNANDRQEPV---LVRNIPPYDPTAD 243

Query: 908  TPDKAYHLDEIIPIIERDDLFDILEALESGTDISPKSYPTFVYNRRHKLREIKDQKEKGE 729
            T + AY LDEIIP   R+   +I+   ESG +IS K Y +FV  R HKL+E++ + +K  
Sbjct: 244  TSENAYLLDEIIPKSMREHFLEIVRHFESG-EISSKGYGSFVSKRVHKLKELQGE-DKKR 301

Query: 728  LACILSYISHLCHF-----------WDRQKHEHFEH-LKIPRASYQNFTRTFLDPNSIKL 585
             A ILSYI HL              W  +      H    P+A Y+     F +P S  +
Sbjct: 302  FAWILSYIQHLLSLLARNGSMSNRKWKGRNENQISHGPATPQAVYRRLLFMFTEPGSSVM 361

Query: 584  TAEKKELMIGYILVLTLFVDSFQTDPTDIAKDLKMTTMSLKPYFVQLGCKG--KHVFNKP 411
              EKKEL+  YILVLTLF D F+++P+DI +DLKMT  +LKPY+ QLGCK   +  F K 
Sbjct: 362  PTEKKELLTNYILVLTLFADDFRSNPSDICEDLKMTRQNLKPYYDQLGCKSVTEGAF-KS 420

Query: 410  TIWNLTAPLRLPEIIKTSRRNK 345
            T   L APL+ P+ +   RR +
Sbjct: 421  TFMTLPAPLKFPKEVTRKRRRQ 442


>ref|XP_003577359.1| PREDICTED: DNA-directed RNA polymerase I subunit rpa49-like
            [Brachypodium distachyon]
          Length = 472

 Score =  270 bits (691), Expect = 1e-69
 Identities = 175/428 (40%), Positives = 242/428 (56%), Gaps = 9/428 (2%)
 Frame = -1

Query: 1628 SERWKKETKSRRDRQAMAGATSVAGSGSKKRKWKRVNVAMEGVSETADHVAPIVGYFPSG 1449
            S + KK+ +   D    A ++  A S  KK+K K ++V ++  S  A   AP+VGYFP+G
Sbjct: 41   SSKKKKKHRKATDVTVDAPSSPTAASSKKKKKRKAIDVTVDA-SFAAAAAAPVVGYFPTG 99

Query: 1448 FDPHGHANGDPKIKVFRNKRRPNRLELXXXXXXXXXXXVGRSYAGEAAVPQICNYAVGVL 1269
            +DP   A   P+ ++FR+++  NR++L           VGRSYAGE A P +C YA+GVL
Sbjct: 100  YDPLAAAE-PPRARLFRHEKHSNRVDLVVSAPGGGLDFVGRSYAGETAAPHLCGYALGVL 158

Query: 1268 DKESQTLKIVPIASNKILRLEPRLKGNSLLETEVSEGLAEESVGTNKVERKVRELTLMYG 1089
            DK S TLK+VPIA+NKILRLEP  +      +E S   A  SV   +V+R  ++LT  YG
Sbjct: 159  DKASGTLKVVPIAANKILRLEPHFEEQKPAHSEQSAAEAGSSVANTEVKR--QQLTEAYG 216

Query: 1088 TXXXXXXXXXXXSFFSQRNDASTDEHINNINHETDEGNDVLEDAVESIPRNIPPHDLSAD 909
            T           S   + ND   D ++     ++    D  +       RNIPP+D +AD
Sbjct: 217  TQKDKVKDNKWKSLKEETND--PDAYLGLELGDSKTTADATDSQASVTVRNIPPYDPAAD 274

Query: 908  TPDKAYHLDEIIPIIERDDLFDILEALESGTDISPKSYPTFVYNRRHKLREIKDQKEKGE 729
            T +KAY  DEIIP   R  L +I+   ESG +IS K Y +FV NR +KL+ +K +  K  
Sbjct: 275  TSEKAYLFDEIIPKNIRPHLLEIVGHFESG-EISSKGYGSFVSNRVNKLQHLKGE-GKER 332

Query: 728  LACILSYISHLCHFWDR----QKHEHFEHLK----IPRASYQNFTRTFLDPNSIKLTAEK 573
            LA ILSYI++L     R     K +  E+L     IP   ++N    F +P S  L+ EK
Sbjct: 333  LAWILSYITYLLSLLARNSAMSKRDRKENLSHGPTIPPNVHRNLLLMFTEPGSSALSTEK 392

Query: 572  KELMIGYILVLTLFVDSFQTDPTDIAKDLKMTTMSLKPYFVQLGCK-GKHVFNKPTIWNL 396
             EL+I YILVLTL+ D+F + P DI +DLKMT   LKPY++QLGCK G     KP++  L
Sbjct: 393  HELLINYILVLTLYADNFTSSPADICEDLKMTREMLKPYYLQLGCKYGSAGAFKPSVITL 452

Query: 395  TAPLRLPE 372
             APL+ P+
Sbjct: 453  PAPLKFPQ 460


>gb|EMT03118.1| DNA-directed RNA polymerase I subunit rpa49 [Aegilops tauschii]
          Length = 421

 Score =  270 bits (690), Expect = 1e-69
 Identities = 174/420 (41%), Positives = 235/420 (55%), Gaps = 13/420 (3%)
 Frame = -1

Query: 1565 SVAGSGSKKRKWKRVNVAMEGVSETA--DHVAPIVGYFPSGFDPHGHANGDPKIKVFRNK 1392
            S A S  KK++  +   A+E   + +     AP+VGYFP+G+DP   A   P++++FR++
Sbjct: 9    SPAASSKKKKRHSKKRKAIEVTVDASFPGAAAPVVGYFPTGYDPLAAAE-PPRVRLFRHE 67

Query: 1391 RRPNRLELXXXXXXXXXXXVGRSYAGEAAVPQICNYAVGVLDKESQTLKIVPIASNKILR 1212
            +  NR+EL           VGRSYAGEAA PQ+C YA+GVLDK + TLKIVPIASNKILR
Sbjct: 68   KHHNRVELVVGAPGGGPDFVGRSYAGEAAAPQLCGYALGVLDKATGTLKIVPIASNKILR 127

Query: 1211 LEPRLKGNSLLETEVSEGLAEESVGTNKVERKVRELTLMYGTXXXXXXXXXXXSFFSQRN 1032
            LEP  +      ++ S   A  SV   ++ R  ++LT  YGT           S   QRN
Sbjct: 128  LEPHFEAQQPAHSQQSAAEAGSSVADTELNR--QDLTQAYGTKKDKDKDNKWKSLKEQRN 185

Query: 1031 DASTDEHINNINHETDEGNDVLEDAVESIPRNIPPHDLSADTPDKAYHLDEIIPIIERDD 852
            D S    ++    +T       E +VE   RNIPP+D +ADT +KAY  DEIIP   R  
Sbjct: 186  DPSAYLDLDLGESKTTADATDSEASVE--VRNIPPYDPAADTSEKAYLFDEIIPKNIRPH 243

Query: 851  LFDILEALESGTDISPKSYPTFVYNRRHKLREIKDQKEKGELACILSYISHLCHFWDR-- 678
            L DI+   ESG +   K Y +FV NR +KL+E++ + ++  LA ILSYI+HL     R  
Sbjct: 244  LLDIVGHFESG-EFGLKGYGSFVSNRVNKLQELQGEDQE-RLAWILSYITHLLSLLARNS 301

Query: 677  --------QKHEHFEHLKIPRASYQNFTRTFLDPNSIKLTAEKKELMIGYILVLTLFVDS 522
                    +K +      IP+A ++     F +P S  L+ EK EL++ YILVLTLF D 
Sbjct: 302  SMSKQKRKEKDQTIRGPMIPQAVHRKLLLMFTEPGSSSLSTEKHELLVNYILVLTLFADD 361

Query: 521  FQTDPTDIAKDLKMTTMSLKPYFVQLGCKGKHV-FNKPTIWNLTAPLRLPEIIKTSRRNK 345
            F+++PTDI  DLKM    LKPY+ QLGCK       KP    L APL+ P+ +   RR K
Sbjct: 362  FRSEPTDICVDLKMNRQMLKPYYDQLGCKSVSTGAFKPFFMTLPAPLKFPQQVTRRRRRK 421


>dbj|BAJ90975.1| predicted protein [Hordeum vulgare subsp. vulgare]
          Length = 431

 Score =  268 bits (684), Expect = 7e-69
 Identities = 177/424 (41%), Positives = 233/424 (54%), Gaps = 17/424 (4%)
 Frame = -1

Query: 1565 SVAGSGSKKRKWKRVNVAMEGVSETA--DHVAPIVGYFPSGFDPHGHANGDPKIKVFRNK 1392
            S A S  KK+K  +   A+E   + +     AP+VGYFP+G+DP   A+  P+ ++FR++
Sbjct: 20   SPAASSKKKKKHSKKRKAIEVTVDASFPGAAAPVVGYFPTGYDPLAAAD-PPRARLFRHE 78

Query: 1391 RRPNRLELXXXXXXXXXXXVGRSYAGEAAVPQICNYAVGVLDKESQTLKIVPIASNKILR 1212
            +  NR+EL           VGRSYAGEAA PQ+C YA+GVLDK + TLKIVPIASNKILR
Sbjct: 79   KHHNRVELVVDAPGGGPDFVGRSYAGEAAAPQLCGYALGVLDKATGTLKIVPIASNKILR 138

Query: 1211 LEPRLKGNSLLETEVSEGLAEESVGTNKVERKVRELTLMYGTXXXXXXXXXXXSFFSQRN 1032
            LEP  +      ++ S   A  SV   ++ R  ++LT  YGT           S   QRN
Sbjct: 139  LEPHFEVQQPAHSQQSAAEACSSVADTELNR--QDLTQAYGTKKDKDKDNKWKSLKEQRN 196

Query: 1031 DASTDEHINNINHETDEGNDVLEDAVESIP----RNIPPHDLSADTPDKAYHLDEIIPII 864
            D S          + D G     DA +S      RNIPP+D +ADT +KAY  DEIIP  
Sbjct: 197  DPSA-------YLDLDLGESKTADATDSQASMEVRNIPPYDPAADTSEKAYLFDEIIPKN 249

Query: 863  ERDDLFDILEALESGTDISPKSYPTFVYNRRHKLREIKDQKEKGELACILSYISHLCHFW 684
             R  L DI+   ESG +   K Y +FV NR +KL E++ + ++  LA ILSYI+HL    
Sbjct: 250  IRPHLLDIVGHFESG-EFGLKGYGSFVSNRVNKLHELQGEDQE-RLAWILSYITHLLSLL 307

Query: 683  DR----------QKHEHFEHLKIPRASYQNFTRTFLDPNSIKLTAEKKELMIGYILVLTL 534
             R          +K +      IP+A ++     F +P S  L+ EK EL+I YILVLTL
Sbjct: 308  ARNSSMSKQKRKEKDQTIRGPMIPQAVHRKLLLMFTEPGSSSLSTEKYELLINYILVLTL 367

Query: 533  FVDSFQTDPTDIAKDLKMTTMSLKPYFVQLGCKGKHV-FNKPTIWNLTAPLRLPEIIKTS 357
            F D F+++PTDI  DLKM    LKPY+ QLGCK       KP    L APL+ P+ +   
Sbjct: 368  FADDFRSEPTDICADLKMNRQMLKPYYDQLGCKSVSTGAFKPFFMTLPAPLKFPQQVTRR 427

Query: 356  RRNK 345
            RR K
Sbjct: 428  RRRK 431


>dbj|BAJ94402.1| predicted protein [Hordeum vulgare subsp. vulgare]
            gi|326529171|dbj|BAK00979.1| predicted protein [Hordeum
            vulgare subsp. vulgare]
          Length = 433

 Score =  268 bits (684), Expect = 7e-69
 Identities = 177/424 (41%), Positives = 233/424 (54%), Gaps = 17/424 (4%)
 Frame = -1

Query: 1565 SVAGSGSKKRKWKRVNVAMEGVSETA--DHVAPIVGYFPSGFDPHGHANGDPKIKVFRNK 1392
            S A S  KK+K  +   A+E   + +     AP+VGYFP+G+DP   A+  P+ ++FR++
Sbjct: 22   SPAASSKKKKKHSKKRKAIEVTVDASFPGAAAPVVGYFPTGYDPLAAAD-PPRARLFRHE 80

Query: 1391 RRPNRLELXXXXXXXXXXXVGRSYAGEAAVPQICNYAVGVLDKESQTLKIVPIASNKILR 1212
            +  NR+EL           VGRSYAGEAA PQ+C YA+GVLDK + TLKIVPIASNKILR
Sbjct: 81   KHHNRVELVVDAPGGGPDFVGRSYAGEAAAPQLCGYALGVLDKATGTLKIVPIASNKILR 140

Query: 1211 LEPRLKGNSLLETEVSEGLAEESVGTNKVERKVRELTLMYGTXXXXXXXXXXXSFFSQRN 1032
            LEP  +      ++ S   A  SV   ++ R  ++LT  YGT           S   QRN
Sbjct: 141  LEPHFEVQQPAHSQQSAAEACSSVADTELNR--QDLTQAYGTKKDKDKDNKWKSLKEQRN 198

Query: 1031 DASTDEHINNINHETDEGNDVLEDAVESIP----RNIPPHDLSADTPDKAYHLDEIIPII 864
            D S          + D G     DA +S      RNIPP+D +ADT +KAY  DEIIP  
Sbjct: 199  DPSA-------YLDLDLGESKTADATDSQASMEVRNIPPYDPAADTSEKAYLFDEIIPKN 251

Query: 863  ERDDLFDILEALESGTDISPKSYPTFVYNRRHKLREIKDQKEKGELACILSYISHLCHFW 684
             R  L DI+   ESG +   K Y +FV NR +KL E++ + ++  LA ILSYI+HL    
Sbjct: 252  IRPHLLDIVGHFESG-EFGLKGYGSFVSNRVNKLHELQGEDQE-RLAWILSYITHLLSLL 309

Query: 683  DR----------QKHEHFEHLKIPRASYQNFTRTFLDPNSIKLTAEKKELMIGYILVLTL 534
             R          +K +      IP+A ++     F +P S  L+ EK EL+I YILVLTL
Sbjct: 310  ARNSSMSKQKRKEKDQTIRGPMIPQAVHRKLLLMFTEPGSSSLSTEKYELLINYILVLTL 369

Query: 533  FVDSFQTDPTDIAKDLKMTTMSLKPYFVQLGCKGKHV-FNKPTIWNLTAPLRLPEIIKTS 357
            F D F+++PTDI  DLKM    LKPY+ QLGCK       KP    L APL+ P+ +   
Sbjct: 370  FADDFRSEPTDICADLKMNRQMLKPYYDQLGCKSVSTGAFKPFFMTLPAPLKFPQQVTRR 429

Query: 356  RRNK 345
            RR K
Sbjct: 430  RRRK 433


>gb|EAY88445.1| hypothetical protein OsI_09911 [Oryza sativa Indica Group]
          Length = 438

 Score =  265 bits (677), Expect = 4e-68
 Identities = 167/418 (39%), Positives = 228/418 (54%), Gaps = 18/418 (4%)
 Frame = -1

Query: 1544 KKRKWKRVNVAMEGVSETADHVAPIVGYFPSGFDPHGHANGD-----PKIKVFRNKRRPN 1380
            KKR+   V V        A   AP+V YFP+G+DP     G      P+ ++FR+ + P+
Sbjct: 25   KKREVVHVTVDASLTGAAAAGAAPVVAYFPTGYDPLAAGGGRKGREAPRTRLFRHTKHPS 84

Query: 1379 RLELXXXXXXXXXXXV---GRSYAGEAAVPQICNYAVGVLDKESQTLKIVPIASNKILRL 1209
            R+EL               GRSYAGEA +PQ+  YA+GVLDK S TLK+VPIA+NKILRL
Sbjct: 85   RIELVVGAATGGGGGPDFVGRSYAGEAVLPQLTGYALGVLDKASGTLKVVPIAANKILRL 144

Query: 1208 EPRLKGNSLLETEVSEGLAEESVGTNKVERKVRELTLMYGTXXXXXXXXXXXSFFSQRND 1029
            EP L+   L  ++ S  + E        + KV+++T  +GT           S   QRND
Sbjct: 145  EPHLEVQKLAHSQHSGAVGEAVSSAGDADLKVQDITKAFGTQKDKAKDIKWQSLNEQRND 204

Query: 1028 ASTDEHINNINHETDEGNDVLEDAVESIPRNIPPHDLSADTPDKAYHLDEIIPIIERDDL 849
             S    ++  N +T  G     ++ E   RNIPP+D +ADT ++AY  DEIIP   R  L
Sbjct: 205  PSAFMDLDLGNADTSVG---ANESQEPTVRNIPPYDPAADTSERAYLFDEIIPKSIRPHL 261

Query: 848  FDILEALESGTDISPKSYPTFVYNRRHKLREIKDQKEKGELACILSYISHLCHFWDRQKH 669
             DI+   ESG +IS K Y +FV NR +KL+E++ + +K  LA ILSYI+HL     R   
Sbjct: 262  VDIIGHFESG-EISSKGYGSFVSNRVNKLQELQGE-DKERLAWILSYITHLLSLLARNSS 319

Query: 668  EHFEHLK---------IPRASYQNFTRTFLDPNSIKLTAEKKELMIGYILVLTLFVDSFQ 516
                H K         IP+  Y+     F +P S  L+ EK EL+I YILVLTL+ D F+
Sbjct: 320  MSKRHRKENQATSGPVIPQYVYRKMVLMFTEPGSSALSTEKHELLINYILVLTLYADDFR 379

Query: 515  TDPTDIAKDLKMTTMSLKPYFVQLGCKGKHV-FNKPTIWNLTAPLRLPEIIKTSRRNK 345
            +DP DI +DLKMT   +KPY+ QLGCK       K ++  L APL+ P+     +R +
Sbjct: 380  SDPKDICEDLKMTRQMIKPYYDQLGCKSSSAGAFKSSVMTLPAPLKFPKEATRRKRRR 437


>gb|EXB29690.1| DNA-directed RNA polymerase I subunit rpa49 [Morus notabilis]
          Length = 438

 Score =  261 bits (666), Expect = 8e-67
 Identities = 163/433 (37%), Positives = 241/433 (55%), Gaps = 9/433 (2%)
 Frame = -1

Query: 1622 RWKKETKSRRDRQAMAGATSVAGSGSKKRKWKRVNVAMEGVSETADHVAPIVGYFPSGFD 1443
            R   ET++ R R   + +TS+A   SKK++  +V   ++ V    +   P+VGYFPSGFD
Sbjct: 11   RQNLETETPRKRSEPS-STSIAEKKSKKKRKNKVEATIQVVQNQPERAPPLVGYFPSGFD 69

Query: 1442 PHG---HANGDPKIKVFRNKRRPNRLELXXXXXXXXXXXVGRSYAGEA-AVPQICNYAVG 1275
            P      ++     +VFRN+ +P RL+L           VG +Y+GEA A  Q CNYA+G
Sbjct: 70   PKDGDDESSATAMARVFRNRNKPKRLQLVVSPNGANVDFVGTNYSGEAEAGQQHCNYALG 129

Query: 1274 VLDKESQTLKIVPIASNKILRLEPRLKGNSLLETEVSEGLAEESVGTNKVERKVRELTLM 1095
            VLDKE+QTLKIVPIASNKI RLEP+++G  L   + S  LAE          K++ LT  
Sbjct: 130  VLDKETQTLKIVPIASNKIFRLEPKVRGLRLPNKD-SGSLAEGERSALSKSEKIKGLTDR 188

Query: 1094 YGTXXXXXXXXXXXSFFSQRNDASTDEHINNINHETDEGNDVLEDAVESIPRNIPPHDLS 915
            YGT           + + Q +D  T + ++    +     D LE       RNIPP++ +
Sbjct: 189  YGTNKSIREAKKRDALY-QNDDPETQKDMDEKIKQIVIKKDALESTQVHTDRNIPPYNAA 247

Query: 914  ADTPDKAYHLDEIIPIIERDDLFDILEALESGTDISPKSYPTFVYNRRHKLREIKDQKEK 735
            A +  +AY +++II   E D L DI   L+   ++    YP+F+ NR   LRE +D++EK
Sbjct: 248  ATSSQEAYPIEKIILKGEWDFLEDIYRLLQEEAELKSDDYPSFISNRIQNLRETEDEEEK 307

Query: 734  GELACILSYISHLCHFWDRQKHE---HFEHLKIPRASYQNFTRTFLDPNSIKLTAEKKEL 564
               ACI SYI+HL  F D    +     +  K P    Q F+  FL     KL +++ +L
Sbjct: 308  KRRACIFSYITHLIKFKDLHSMDGVSSAKRHKFPSILRQKFSAMFLSSEVKKLASKENDL 367

Query: 563  MIGYILVLTLFVDSFQTDPTDIAKDLKMTTMSLKPYFVQLGCKGKHVFNKPTIW--NLTA 390
            +I Y+LVLTL+ D FQT+ TDIAKDL+MT+++L+ ++ QLGCK   +  +  +W   L  
Sbjct: 368  LISYVLVLTLYADRFQTNLTDIAKDLRMTSVTLRVHYEQLGCK---LVRQNNLWFATLPV 424

Query: 389  PLRLPEIIKTSRR 351
            PL+ P++ +  R+
Sbjct: 425  PLQFPDLRQRRRK 437


>ref|XP_006663046.1| PREDICTED: DNA-directed RNA polymerase I subunit rpa49-like [Oryza
            brachyantha]
          Length = 470

 Score =  256 bits (655), Expect = 2e-65
 Identities = 166/448 (37%), Positives = 238/448 (53%), Gaps = 24/448 (5%)
 Frame = -1

Query: 1616 KKETKSRRDRQAMAGATSVAGSGSKKRKWKR----------VNVAMEGVSETADHVAPIV 1467
            KK +K R        A+  A +  +K+K K           V+ ++ G    +   APIV
Sbjct: 44   KKRSKKRESIDVTEDASLAAAAAPEKKKKKHSKKREVINVTVDASLTGGGAASSGAAPIV 103

Query: 1466 GYFPSGFDPHGHANGDPK----IKVFRNKRRPNRLELXXXXXXXXXXXVGRSYAGEAAVP 1299
             YFP+G+DP   A    K     ++FR  + P R+EL           VGRS+AGEA +P
Sbjct: 104  AYFPTGYDPLAAAARKGKEPSRTRLFRQTKHPTRIELVVGAPGGGPDFVGRSFAGEAVLP 163

Query: 1298 QICNYAVGVLDKESQTLKIVPIASNKILRLEPRLKGNSLLETEVSEGLAEESVGTNKVER 1119
            Q   YA+GVLDK S TLK+VPIASNK                + ++    E+      E 
Sbjct: 164  QHTGYALGVLDKASGTLKVVPIASNK----------------KPAQSQHSEAGSAENAEL 207

Query: 1118 KVRELTLMYGTXXXXXXXXXXXSFFSQRNDASTDEHINNINHETDEGNDVLEDAVESIPR 939
            KV+++TLM+G+           S   QRND S    ++  N +T+ G     ++ E   R
Sbjct: 208  KVQDVTLMFGSQADKNKDIKWKSLNEQRNDPSAFLDLDLGNSDTNVG---ASESQEQTVR 264

Query: 938  NIPPHDLSADTPDKAYHLDEIIPIIERDDLFDILEALESGTDISPKSYPTFVYNRRHKLR 759
            NIPP+D +A+T ++AY  DEIIP   R  L DI+E  ESG + S K Y +FV NR +KL+
Sbjct: 265  NIPPYDPAANTSERAYLFDEIIPSSIRPHLMDIVEHFESG-EFSSKGYESFVSNRVNKLQ 323

Query: 758  EIKDQKEKGELACILSYISHLCHF---------WDRQKHEHFEHLKIPRASYQNFTRTFL 606
            E++ + +K  LA ILSYI+HL  F         W R+++     L IP A Y+     F+
Sbjct: 324  ELQGE-DKERLAWILSYITHLLTFLERNNSMSKWRRKENRATNRLMIPHAVYRKLLLMFV 382

Query: 605  DPNSIKLTAEKKELMIGYILVLTLFVDSFQTDPTDIAKDLKMTTMSLKPYFVQLGCKGKH 426
            +P S  ++ EK EL+I YILVLTL+ D+F++DP DI +DLKMT+  ++PY+ QLGCK   
Sbjct: 383  EPGSGAVSTEKHELLINYILVLTLYADNFRSDPKDICEDLKMTSQMIRPYYAQLGCKSVS 442

Query: 425  V-FNKPTIWNLTAPLRLPEIIKTSRRNK 345
                  T+  L APL+ P+     +R +
Sbjct: 443  AGALNSTVMTLPAPLKFPKEFARRKRRR 470


>ref|XP_006465974.1| PREDICTED: uncharacterized protein LOC102616137 [Citrus sinensis]
          Length = 447

 Score =  256 bits (653), Expect = 3e-65
 Identities = 160/432 (37%), Positives = 234/432 (54%), Gaps = 10/432 (2%)
 Frame = -1

Query: 1616 KKETKSRRDRQAMAGATSVAGSGSKKRKWKRVNVAMEGVSETADHVAPIVGYFPSGFDP- 1440
            KK+ K R+  +A    T++      + + +RV   ++ + E  +   P+VGYFPS + P 
Sbjct: 25   KKKNKKRKKDKAN---TTIDEQPEPELEPERVKAKVQFIPEQPNKAPPLVGYFPSIYKPD 81

Query: 1439 --HGHANGDPKIKVFRN----KRRPNRLELXXXXXXXXXXXVGRSYAGEAAVPQICNYAV 1278
              H      PK++V+RN    K R  R+EL           VG SY+GEA  PQ C+YAV
Sbjct: 82   VDHPDEEMRPKVRVYRNMNEKKNRTGRMELVVSPRDSSVDYVGTSYSGEAMAPQFCHYAV 141

Query: 1277 GVLDKESQTLKIVPIASNKILRLEPRLKGNSLLETEVSEGLAEESVGTNKVERKVRELTL 1098
            GVLD+ +QTLKIVPIA+NKI RLEPR++G+ + + +  +G     V  N        L  
Sbjct: 142  GVLDRSTQTLKIVPIAANKIFRLEPRVRGSDVADKDAGKGEISAEVQANMKAM----LDT 197

Query: 1097 MYGTXXXXXXXXXXXSFFSQRNDASTDEHINNINHETDEGNDVLEDAVESIPRNIPPHDL 918
             YGT           +  ++ ND  + + +           + LE        N+PP+D 
Sbjct: 198  RYGTKKSLRQSKKMHAL-NKENDPESQKDLALKMKSVKINKEALESTTSDTVLNVPPYDA 256

Query: 917  SADTPDKAYHLDEIIPIIERDDLFDILEALESGTDISPKSYPTFVYNRRHKLREIKDQKE 738
            +A TP +AY LD+II   E D + DI   + +G+++   +YP+FV NR HKLREI+D  E
Sbjct: 257  NATTPQQAYPLDKIILKGEWDFVQDIFNHVSAGSEVISDAYPSFVCNRIHKLREIQDDVE 316

Query: 737  KGELACILSYISHLCHFWDRQKHE---HFEHLKIPRASYQNFTRTFLDPNSIKLTAEKKE 567
            K  LA I SYI+HL  F D+   +     +  +IP+  +Q F  +F D  S +L+ +K  
Sbjct: 317  KQTLASIFSYITHLVKFKDQHSMDGGASAKQHRIPKILHQKFLTSFSDAESKRLSDDKIH 376

Query: 566  LMIGYILVLTLFVDSFQTDPTDIAKDLKMTTMSLKPYFVQLGCKGKHVFNKPTIWNLTAP 387
            L+I Y+LVLTL  D F+T+PTDIAKDL+M+   L+ +F +LGCK     N      L  P
Sbjct: 377  LLISYVLVLTLHADDFRTNPTDIAKDLRMSEFKLRDHFEKLGCKLLREKNM-LYATLPVP 435

Query: 386  LRLPEIIKTSRR 351
            L+ P+ I+  RR
Sbjct: 436  LQFPKAIQRRRR 447


>ref|XP_006426597.1| hypothetical protein CICLE_v10025597mg [Citrus clementina]
            gi|557528587|gb|ESR39837.1| hypothetical protein
            CICLE_v10025597mg [Citrus clementina]
          Length = 447

 Score =  256 bits (653), Expect = 3e-65
 Identities = 160/432 (37%), Positives = 234/432 (54%), Gaps = 10/432 (2%)
 Frame = -1

Query: 1616 KKETKSRRDRQAMAGATSVAGSGSKKRKWKRVNVAMEGVSETADHVAPIVGYFPSGFDP- 1440
            KK+ K R+  +A    T++      + + +RV   ++ + E  +   P+VGYFPS + P 
Sbjct: 25   KKKNKKRKKDKAN---TTIDEQPEPELEPERVKAKVQFIPEQPNKAPPLVGYFPSIYKPD 81

Query: 1439 --HGHANGDPKIKVFRN----KRRPNRLELXXXXXXXXXXXVGRSYAGEAAVPQICNYAV 1278
              H      PK++V+RN    K R  R+EL           VG SY+GEA  PQ C+YAV
Sbjct: 82   VDHPDEEMRPKVRVYRNMNEKKNRTGRMELVVSPRDSSVDYVGTSYSGEAMAPQFCHYAV 141

Query: 1277 GVLDKESQTLKIVPIASNKILRLEPRLKGNSLLETEVSEGLAEESVGTNKVERKVRELTL 1098
            GVLD+ +QTLKIVPIA+NKI RLEPR++G+ + + +  +G     V  N        L  
Sbjct: 142  GVLDRNTQTLKIVPIAANKIFRLEPRVRGSDVADKDAGKGEISAEVQANMKAM----LDT 197

Query: 1097 MYGTXXXXXXXXXXXSFFSQRNDASTDEHINNINHETDEGNDVLEDAVESIPRNIPPHDL 918
             YGT           +  ++ ND  + + +           + LE        N+PP+D 
Sbjct: 198  RYGTKKSLRQSKKMHAL-NKENDPESQKDLALKMKSVKINKEALESTTSDTVLNVPPYDA 256

Query: 917  SADTPDKAYHLDEIIPIIERDDLFDILEALESGTDISPKSYPTFVYNRRHKLREIKDQKE 738
            +A TP +AY LD+II   E D + DI   + +G+++   +YP+FV NR HKLREI+D  E
Sbjct: 257  NATTPQQAYPLDKIILKGEWDFVQDIFNHVSAGSEVISDAYPSFVCNRIHKLREIQDDVE 316

Query: 737  KGELACILSYISHLCHFWDRQKHE---HFEHLKIPRASYQNFTRTFLDPNSIKLTAEKKE 567
            K  LA I SYI+HL  F D+   +     +  +IP+  +Q F  +F D  S +L+ +K  
Sbjct: 317  KQTLASIFSYITHLVKFKDQHSMDGGASAKQHRIPKILHQKFLTSFSDAESKRLSDDKIH 376

Query: 566  LMIGYILVLTLFVDSFQTDPTDIAKDLKMTTMSLKPYFVQLGCKGKHVFNKPTIWNLTAP 387
            L+I Y+LVLTL  D F+T+PTDIAKDL+M+   L+ +F +LGCK     N      L  P
Sbjct: 377  LLISYVLVLTLHADDFRTNPTDIAKDLRMSEFKLRDHFEKLGCKLLREKNM-LYATLPVP 435

Query: 386  LRLPEIIKTSRR 351
            L+ P+ I+  RR
Sbjct: 436  LQFPKAIQRRRR 447


>gb|EOY23991.1| DNA-directed RNA polymerase I subunit rpa49, putative [Theobroma
            cacao]
          Length = 457

 Score =  255 bits (652), Expect = 3e-65
 Identities = 165/466 (35%), Positives = 249/466 (53%), Gaps = 42/466 (9%)
 Frame = -1

Query: 1622 RWKKETKSRRDRQAMAGATSVAGS-GSKKRKWKRVNVAMEGVSETADHVAPIVGYFPSGF 1446
            R KK  K  R+ +       ++ + G+KK  ++   V ++   +  + + P+V YFPSG+
Sbjct: 12   RSKKSKKRNREGKLQQPIEPMSQNLGAKKENFQ---VKIQLFQDQPNKIPPLVAYFPSGY 68

Query: 1445 DP--------------------HGHANGDPKIKVFRN--KRRPNRLELXXXXXXXXXXXV 1332
            +P                      + +  P++KV+RN  +R+ NRL++           V
Sbjct: 69   NPCKTDPQTRQGEEEEEEEEEGPDNKSNQPRVKVYRNMAQRKTNRLQVVVSPSGSNVDFV 128

Query: 1331 GRSYAGEAAVPQICNYAVGVLDKESQTLKIVPIASNKILRLEPRLKGNSLLETEVSEGLA 1152
            G +Y+GEAA  Q+C Y++GVLD+E++TLKI+PIASNKI RLEPR++ +     +VS  + 
Sbjct: 129  GSNYSGEAAAAQVCRYSLGVLDRETRTLKIIPIASNKIFRLEPRVRSSETANKDVSSSVK 188

Query: 1151 EESVGTNKVERKVRELTLMYGTXXXXXXXXXXXSFFSQRNDASTDEHINNINHETD-EGN 975
             E    +K E K+ ELT +YGT                + D    + +NN+  E D E  
Sbjct: 189  SELTTEDK-EDKMGELTALYGT----------------KKDRKKRKDLNNLKKEVDPESQ 231

Query: 974  DVLEDAVESIP--------------RNIPPHDLSADTPDKAYHLDEIIPIIERDDLFDIL 837
              L++ +E +               RNIPPHD SA TP +AY LD+II   + + L DI 
Sbjct: 232  KSLDEKIEQVAFNKEALGNTSALVARNIPPHDSSATTPVEAYPLDKIILKGDWEFLGDIY 291

Query: 836  EALESGTDISPKSYPTFVYNRRHKLREIKDQKEKGELACILSYISHLCHFWDRQKHEHFE 657
              LE G +++  +YPTFV NR +KL  I+D+ EK +L+C+ S+I+HL  F D+   +   
Sbjct: 292  GLLEVGAEVASNAYPTFVCNRINKLEGIQDETEKRKLSCVFSFITHLVKFNDQFSMDRVA 351

Query: 656  HL---KIPRASYQNFTRTFLDPNSIKLTAEKKELMIGYILVLTLFVDSFQTDPTDIAKDL 486
                 KIP    Q F   F DP   K + ++  L+I Y+LVLTL  D F+TDP+DIAKDL
Sbjct: 352  SAKGHKIPSIIRQRFFTMFTDPGLRKPSRDQINLLISYVLVLTLHADGFRTDPSDIAKDL 411

Query: 485  KMTTMSLKPYFVQLGCKGKHVFNKPTIWNLTAPLRLP-EIIKTSRR 351
            +M+++ L+P+F  LGCK     N      L  PL+ P E +K  R+
Sbjct: 412  RMSSIGLRPHFENLGCKLVRE-NNSIFTTLPVPLKFPSETLKRQRK 456


>ref|XP_003546428.1| PREDICTED: DNA-directed RNA polymerase I subunit rpa49-like [Glycine
            max]
          Length = 424

 Score =  255 bits (652), Expect = 3e-65
 Identities = 159/399 (39%), Positives = 215/399 (53%), Gaps = 6/399 (1%)
 Frame = -1

Query: 1529 KRVNVAMEGVSETADHVAPIVGYFPSGFDP-HGHANGDPKIKVFRNKRRPNRLELXXXXX 1353
            +++ V +E V E  +   P+VGYFPSGFDP   H  G    +V+R++  P RLEL     
Sbjct: 34   EQIEVEVEVVREHPNKTPPVVGYFPSGFDPVKNHGGGPSNFQVYRHRSMPKRLELVVRPP 93

Query: 1352 XXXXXXVGRSYAGEAAVPQICNYAVGVLDKESQTLKIVPIASNKILRLEPRLKGNSLLET 1173
                  VG SYAGEAA      YA+GVLDKE+ TLK+VPIA NKI RLEP++KG    E 
Sbjct: 94   RSSVEFVGTSYAGEAAARHRAKYALGVLDKEAGTLKVVPIAGNKIFRLEPKVKGVGAFEN 153

Query: 1172 EVSEGLAEESVGTNKVERKVRELTLMYGTXXXXXXXXXXXSFFSQRNDASTDEHINNINH 993
            E +    EE       ++K  E T ++GT           +   Q  D  +  +++    
Sbjct: 154  EPANSTLEEMTQ----QQKFAETTSIWGTKKDIEKAKKKLAL-RQDEDPDSQRNLDVKMK 208

Query: 992  ETDEGNDVLEDAVESIPRNIPPHDLSADTPDKAYHLDEIIPIIERDDLFDILEALESGTD 813
                    LE     + RNIPP+D SA TP +AY LD+II   E D L DI   L+ G +
Sbjct: 209  SVTVNKKALESTESHVSRNIPPYDASATTPQEAYILDKIILKGEWDYLEDIYNNLQRGEE 268

Query: 812  ISPKSYPTFVYNRRHKLREIKDQKEKGELACILSYISHLCHFWDRQKHE--HFEHLKIPR 639
                +YPTFV NR  +LR+IKD+ EK +L+CI SYI+HL  F D+   +    +  KIP 
Sbjct: 269  ADFSAYPTFVRNRIERLRKIKDESEKKQLSCIFSYINHLIKFKDQHSFDVLSAKGHKIPN 328

Query: 638  ASYQNFTRTFLDPNSIKLTAEKKELMIGYILVLTLFVDSFQTDPTDIAKDLKMTTMSLKP 459
                 F+  F    S +L  EK  L+I Y+LVLTLF D F+TD TDIAKDL M  + ++ 
Sbjct: 329  ILRHKFSNMFAVSESKRLPPEKISLLICYVLVLTLFSDEFRTDYTDIAKDLSMNILPVRQ 388

Query: 458  YFVQLGCK---GKHVFNKPTIWNLTAPLRLPEIIKTSRR 351
             +  LGCK    K++F       L  PL+ PE+ +  R+
Sbjct: 389  LYEHLGCKISRQKNIFYA----TLPVPLKFPELRQRKRK 423


>ref|XP_004141689.1| PREDICTED: uncharacterized protein LOC101221697 [Cucumis sativus]
            gi|449480549|ref|XP_004155927.1| PREDICTED:
            uncharacterized protein LOC101224839 [Cucumis sativus]
          Length = 435

 Score =  250 bits (638), Expect = 1e-63
 Identities = 156/409 (38%), Positives = 229/409 (55%), Gaps = 8/409 (1%)
 Frame = -1

Query: 1553 SGSKKRKWKRVNVAMEGVSETADHVAPIVGYFPSGFDPHGHANGDP----KIKVFRNKRR 1386
            S  KK++   ++  ++ +S       P+VGYFPSGFDPH  A+ +     + +V+++K R
Sbjct: 31   SEKKKKRVLSMDAKIQVLSNQPQKTPPVVGYFPSGFDPHKDADKEQSRSVRARVYKHKNR 90

Query: 1385 PNRLELXXXXXXXXXXXVGRSYAGEA-AVPQICNYAVGVLDKESQTLKIVPIASNKILRL 1209
            PNR++L           VG +Y GEA A  Q C YA+GVLDK +Q+LKIVPIASN I RL
Sbjct: 91   PNRMQLVVSPTGSNVDFVGTNYLGEATAGKQHCTYALGVLDKATQSLKIVPIASNMIFRL 150

Query: 1208 EPRLKGNSLLETEVSEGLAEESVGTNKVERKVRELTLMYGTXXXXXXXXXXXSFFSQRND 1029
            +P+++G+ + E E      EE  G +K  R +RELT +YGT           +   Q +D
Sbjct: 151  DPKVRGSDVTENESPSVANEELSGQDKANR-MRELTALYGTKKSKKQAQKLHAL-KQEDD 208

Query: 1028 ASTDEHINNINHETDEGNDVLEDAVESIPRNIPPHDLSADTPDKAYHLDEIIPIIERDDL 849
              T   ++          + LE     + RNIP ++ SA TP +AY LD+II   E   L
Sbjct: 209  PETKSDLDGRMKNVVVNKEALEGTQAEVARNIPAYNASATTPQEAYPLDKIILKGEWSFL 268

Query: 848  FDILEALESGTDISPKSYPTFVYNRRHKLREIKDQKEKGELACILSYISHLCHFWDRQKH 669
             D+   L+   +IS  +YP+FV NR +KL++I+D++EK +L CI SYI+HL  + D+   
Sbjct: 269  EDLYFRLQETAEISA-TYPSFVRNRIYKLQDIQDEEEKKKLCCIFSYITHLIKYKDQHSM 327

Query: 668  EHFEHLK---IPRASYQNFTRTFLDPNSIKLTAEKKELMIGYILVLTLFVDSFQTDPTDI 498
                  K   IP    Q F+  F    S +L+A+K  L+I ++LVL+LF D F +DP DI
Sbjct: 328  GDVSSAKGHKIPSMLRQKFSSMFPTAESRRLSADKINLLISHVLVLSLFADEFSSDPADI 387

Query: 497  AKDLKMTTMSLKPYFVQLGCKGKHVFNKPTIWNLTAPLRLPEIIKTSRR 351
            AKDL+ +   L+ +F  LGCK     N  ++  L  PL+ PE+ +  RR
Sbjct: 388  AKDLRTSPYDLRLHFDNLGCKFIRK-NNLSLATLPIPLQFPELRQKRRR 435


>ref|NP_001068274.1| Os11g0615100 [Oryza sativa Japonica Group] gi|77551894|gb|ABA94691.1|
            expressed protein [Oryza sativa Japonica Group]
            gi|113645496|dbj|BAF28637.1| Os11g0615100 [Oryza sativa
            Japonica Group] gi|215697331|dbj|BAG91325.1| unnamed
            protein product [Oryza sativa Japonica Group]
          Length = 484

 Score =  247 bits (630), Expect = 1e-62
 Identities = 166/458 (36%), Positives = 234/458 (51%), Gaps = 34/458 (7%)
 Frame = -1

Query: 1616 KKETKSRRDRQAMAGATSVAGSGSKKRKWKR----------------VNVAMEGVSETAD 1485
            KKE  S++ R+A+    + A    K++K  +                V V        A 
Sbjct: 42   KKEKHSKKKREAIDATMAAASPKKKEKKHSKKQEDTNVPEKKREVVHVTVDASLTGAAAA 101

Query: 1484 HVAPIVGYFPSGFDPHGHANGD-----PKIKVFRNKRRPNRLELXXXXXXXXXXXV---G 1329
              AP+V YFP+G+DP     G      P+ ++FR+ + P+R+EL               G
Sbjct: 102  GAAPVVAYFPTGYDPLAAGGGRKGREAPRTRLFRHTKHPSRIELVVGAATGGGGGPDFVG 161

Query: 1328 RSYAGEAAVPQICNYAVGVLDKESQTLKIVPIASNKILRLEPRLKGNSLLETEVSEGLAE 1149
            RSYAGEA +PQ+  YA+GVLDK S TLK+VPIA+NK            L  ++ S  + E
Sbjct: 162  RSYAGEAVLPQLTGYALGVLDKASGTLKVVPIAANK-----------KLAHSQHSGAVGE 210

Query: 1148 ESVGTNKVERKVRELTLMYGTXXXXXXXXXXXSFFSQRNDASTDEHINNINHETDEGNDV 969
                    + KV+++T  +GT           S   QRND S    ++  N +T  G + 
Sbjct: 211  AVSSAGDADLKVQDITKAFGTQKDKAKDIKWQSLNEQRNDPSAFMDLDLGNADTSVGAN- 269

Query: 968  LEDAVESIPRNIPPHDLSADTPDKAYHLDEIIPIIERDDLFDILEALESGTDISPKSYPT 789
              ++ E   RNIPP+D +ADT ++AY  DEIIP   R  L DI+   ESG +IS K Y +
Sbjct: 270  --ESQEPTVRNIPPYDPAADTSERAYLFDEIIPKSIRPHLVDIIGHFESG-EISSKGYGS 326

Query: 788  FVYNRRHKLREIKDQKEKGELACILSYISHLCHFWDRQKHEHFEHLK---------IPRA 636
            FV NR +KL+E++ + +K  LA ILSYI+HL     R       H K         IP+ 
Sbjct: 327  FVSNRVNKLQELQGE-DKERLAWILSYITHLLSLLARNSSMSKRHRKENQATSGPVIPQY 385

Query: 635  SYQNFTRTFLDPNSIKLTAEKKELMIGYILVLTLFVDSFQTDPTDIAKDLKMTTMSLKPY 456
             Y+     F +P S  L+ EK EL+I YILVLTL+ D F++DP DI +DLKMT   +KPY
Sbjct: 386  VYRKMVLMFTEPGSSALSTEKHELLINYILVLTLYADDFRSDPKDICEDLKMTRQMIKPY 445

Query: 455  FVQLGCKGKHV-FNKPTIWNLTAPLRLPEIIKTSRRNK 345
            + QLGCK       K ++  L APL+ P+     +R +
Sbjct: 446  YDQLGCKSSSAGAFKSSVMTLPAPLKFPKEATRRKRRR 483