BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Zingiber24_contig00017339
         (2595 letters)

Database: ./nr 
           37,332,560 sequences; 13,225,080,153 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gb|EOY12189.1| DNA topoisomerase I alpha isoform 1 [Theobroma ca...   913   0.0  
ref|XP_004972822.1| PREDICTED: DNA topoisomerase 1-like isoform ...   907   0.0  
ref|XP_002265386.1| PREDICTED: DNA topoisomerase 1-like [Vitis v...   906   0.0  
ref|XP_006659124.1| PREDICTED: DNA topoisomerase 1-like [Oryza b...   900   0.0  
ref|XP_002443872.1| hypothetical protein SORBIDRAFT_07g003610 [S...   900   0.0  
ref|NP_001061015.1| Os08g0154600 [Oryza sativa Japonica Group] g...   894   0.0  
ref|XP_002300344.1| DNA topoisomerase family protein [Populus tr...   894   0.0  
gb|EAZ05628.1| hypothetical protein OsI_27847 [Oryza sativa Indi...   892   0.0  
emb|CBI28783.3| unnamed protein product [Vitis vinifera]              892   0.0  
ref|XP_004972820.1| PREDICTED: DNA topoisomerase 1-like isoform ...   891   0.0  
ref|XP_002317355.1| DNA topoisomerase family protein [Populus tr...   889   0.0  
dbj|BAG31377.1| topoisomerase I [Catharanthus roseus]                 887   0.0  
dbj|BAG31376.1| topoisomerase I [Camptotheca acuminata]               885   0.0  
ref|NP_001157806.1| topoisomerase I [Zea mays] gi|240065169|gb|A...   880   0.0  
dbj|BAG31375.1| topoisomerase I [Ophiorrhiza japonica]                876   0.0  
gb|AFW61219.1| DNA topoisomerase I [Zea mays]                         869   0.0  
gb|ACL52396.1| unknown [Zea mays]                                     869   0.0  
ref|XP_006364175.1| PREDICTED: LOW QUALITY PROTEIN: DNA topoisom...   868   0.0  
ref|XP_006474977.1| PREDICTED: DNA topoisomerase 1-like isoform ...   864   0.0  
gb|EMT20272.1| DNA topoisomerase 1 [Aegilops tauschii]                864   0.0  

>gb|EOY12189.1| DNA topoisomerase I alpha isoform 1 [Theobroma cacao]
            gi|508720293|gb|EOY12190.1| DNA topoisomerase I alpha
            isoform 1 [Theobroma cacao]
          Length = 904

 Score =  913 bits (2359), Expect = 0.0
 Identities = 513/889 (57%), Positives = 579/889 (65%), Gaps = 25/889 (2%)
 Frame = +2

Query: 2    EEDDDAPLVFRRAN-SSSKQRHLSSTSKKTDTQKDAGSN--LVSNQIAQNGESSHLQNVK 172
            ++DDD P+VF+R N SSSKQ  L+S  KK  +Q+  G +   VS+  + NG+SS+    K
Sbjct: 15   DDDDDGPVVFKRNNTSSSKQNQLNSEVKKASSQRSDGQSGRQVSDVRSPNGQSSNAPKNK 74

Query: 173  LLS--------------KASSEKPXXXXXTSVAVQRKRSMEVEKICMHSKGDNFTS---- 298
             +S              KAS+         S  V  K S  +      +   N T+    
Sbjct: 75   SISSSKSPPVKSPILSPKASTSSTKALPVKSPVVNFKASTSLNDQSKQALKQNMTTAVKE 134

Query: 299  GSAGNMDLSKSNIKSENSDDDKPLSLKYSS-SGIVNRSASLQAVKASQSTKPLPLSVKLX 475
            G +     ++ N   ++ DD  PLS +    S   N+ AS  A   S+   P    VK+ 
Sbjct: 135  GRSPIKGTTEPNSDDDDDDDSLPLSARLKGISNQGNKGASTSAPAQSRRLVP-KTEVKV- 192

Query: 476  XXXXXXXXXXXXXXPLLSRFQSKA-IGGSSMKDSNVAEXXXXXXXXXXXXXXXXXXXXXX 652
                          PL +RF  K+  G SS +  +  E                      
Sbjct: 193  -----SAEDPDDEAPLSARFNVKSNTGTSSSRLHDCDEKKPLASKIQQNGSIMKGKQQNS 247

Query: 653  XXGGQKRPLSGANPXXXXXXXXXXXXXXXXXXXXXQEDFVKKESKTDDNDHLPIAQRMKK 832
                 KRPL   N                      Q   VK E   +D+DH+PIAQRMKK
Sbjct: 248  STLSGKRPLDKGNSSDHSSAKKPKTSDAPTTMKTKQVT-VKAEKADEDDDHMPIAQRMKK 306

Query: 833  TVSSNS-ASISKNALHXXXXXXXXXXXXXXXXXXXXXXXXXXXXXPPGSGGGQ-KWTTLE 1006
            + +SNS  S  K                                 PP SG GQ KW+TL 
Sbjct: 307  STASNSKLSSMKQKTTKVVSSSFKKINKKSKKEMKSSKYIKSTKVPPSSGDGQKKWSTLV 366

Query: 1007 HNGVIFPPPYKPHGVKMLYKGQPVDLTPEQEEVATMFAVMKDTDYASKKQFIENFMHDWR 1186
            HNGVIFP PY PHGVKMLY G+PVDLTPEQEEVATMFAVMKDTDY SK QF +NF  DW 
Sbjct: 367  HNGVIFPSPYTPHGVKMLYDGRPVDLTPEQEEVATMFAVMKDTDYMSKTQFKKNFWEDWS 426

Query: 1187 LMLGKNHIIKKFELCDFTPIYEWHLKEKEKKKQMTSXXXXXXXXXXXXXXXXYMWAIVDG 1366
             +LGKNH IK  + CDFTPIYEWHL+EKEKKKQM+S                +MWAIVDG
Sbjct: 427  KLLGKNHTIKDLDRCDFTPIYEWHLQEKEKKKQMSSEEKKALKEEKLKQEEKFMWAIVDG 486

Query: 1367 VKEKVGNFRVEPPGLFRGRGEHPKMGKLKQRIRPKDITINIGKDAPIPECPIPGERWKEI 1546
            VKEKVGNFRVEPPGLFRGRGEHPKMGKLK+RIRP DITINIGKDAPIPECPIPGERWK+I
Sbjct: 487  VKEKVGNFRVEPPGLFRGRGEHPKMGKLKRRIRPSDITINIGKDAPIPECPIPGERWKDI 546

Query: 1547 KHDNTVTWLAFWNDPINPKEFKYVFLAASSSLKGQSDKEKYEKARLLKDYIQNIRANYTR 1726
            KHDNTVTWLAFWNDPINPKEFKYVFLAASSSLKGQSDKEKYEKAR+LKDYI+NIRA YT+
Sbjct: 547  KHDNTVTWLAFWNDPINPKEFKYVFLAASSSLKGQSDKEKYEKARMLKDYIKNIRAAYTK 606

Query: 1727 DFNSKDPTKRQIAVATYLIDKLALRAGNEKDDDEADTVGCCTLKVENVELVPPNKLKFDF 1906
            DF +KD  KRQIAVATYLIDKLALRAGNEKDDDEADTVGCCTLKV NVE +PPNKLKFDF
Sbjct: 607  DFTTKDVMKRQIAVATYLIDKLALRAGNEKDDDEADTVGCCTLKVGNVECIPPNKLKFDF 666

Query: 1907 LGKDSIRYLNTVEVEPPVYKAIGDFQTAKRSNXXXXXXXXXXXXXXXTSKLNTHLKELMP 2086
            LGKDSI+Y+NTVEVE PVYKAIG FQT K  +               TSKLN HLKELMP
Sbjct: 667  LGKDSIQYVNTVEVELPVYKAIGQFQTGKSKS-------DDLFDKLDTSKLNAHLKELMP 719

Query: 2087 GLTAKVFRTYNASITLDAILNKETKDGTAPEKIAVYQHANKEVAIICNHQRSVSKSHENQ 2266
            GLTAKVFRTYNASITLD +LNKETKDG   EK+ VYQ ANKEVAIICNHQRS+SKSH  Q
Sbjct: 720  GLTAKVFRTYNASITLDEMLNKETKDGDVAEKVVVYQRANKEVAIICNHQRSISKSHSAQ 779

Query: 2267 MSKLNEKINDLKAQREELSTDLNRARKGKPPLKDKEGKTKKNLAPEAIGKKIAQIDAKIE 2446
            MS+L EKI +LK   +EL  DL+RA+KGKPPLKD +GK K+NL P+AI KKI Q +AKIE
Sbjct: 780  MSRLTEKITELKGVLKELKIDLDRAKKGKPPLKDADGKQKRNLTPQAIQKKIDQTNAKIE 839

Query: 2447 KMEIDKQIKEDLKTVALGTSKINYLDPRISVAWCKRHEVPIEKIFNKSL 2593
            KME D Q KEDLKTVALGTSKINYLDPRI+VAWCKRHEVPIEKIFNKSL
Sbjct: 840  KMERDMQTKEDLKTVALGTSKINYLDPRITVAWCKRHEVPIEKIFNKSL 888


>ref|XP_004972822.1| PREDICTED: DNA topoisomerase 1-like isoform X3 [Setaria italica]
          Length = 903

 Score =  907 bits (2343), Expect = 0.0
 Identities = 500/918 (54%), Positives = 588/918 (64%), Gaps = 55/918 (5%)
 Frame = +2

Query: 5    EDDDAPLVFRRANSSSK----------------------QRHLSSTSKK----------- 85
            +DDD P+ F+R+++S K                      Q+H++   +K           
Sbjct: 15   DDDDGPISFKRSSNSVKSSRPTPSKQEGSSGGAGVPVRSQKHVAPNQQKNGVSASVSRPM 74

Query: 86   -------TDTQKDAGSNLVSNQIAQNGESSHLQNVKLLSKASSEKPXXXXXTSVAVQRKR 244
                   +  Q+ +GS   ++  A + +S+     KL      E+        V +  ++
Sbjct: 75   HMKPPPSSPNQRPSGSGQPNSSAAHSSKSNSNDKSKLKRPLVKEENSDDSDDDVPIGLRK 134

Query: 245  SMEVEKICMHSKGDNFTSGSAGNMDLSKSNIKSENSDDDKPLSLKYSSSGIVNRSASLQA 424
             +E +K                   L + + K+++SDDDKPLSLK +SS           
Sbjct: 135  KVEEKK-------------------LKRVDEKADDSDDDKPLSLKINSS----------- 164

Query: 425  VKASQSTKPLPLSVKLXXXXXXXXXXXXXXXPLLSRFQSKAI---GGSSMKDSN-----V 580
             K S +    P+  K                PL SR  + A    GG++ +DS       
Sbjct: 165  -KMSSNCASRPVLQKAVAKVEQPDEDSDDDKPLASRLPTNAAPKSGGNASEDSEDEKPLA 223

Query: 581  AEXXXXXXXXXXXXXXXXXXXXXXXXGGQ---KRPLSGANPXXXXXXXXXXXXXXXXXXX 751
            A                         G +   KRPL  +N                    
Sbjct: 224  ARFSKVSGSGNLKLTSSSKGLNNDSNGPRNLGKRPLDNSNQTSLALKKAKPSNVSASAS- 282

Query: 752  XXQEDFVKKESKTDDNDHLPIAQRMKKTVSSNSASISKNALHXXXXXXXXXXXXXXXXXX 931
                  VK+E K DDND+ P+AQR+K   SS     +KN +                   
Sbjct: 283  ------VKREIKADDNDNTPLAQRLKIGESSKGKPSAKNVVKKSPASMKKGIKKMKGKVK 336

Query: 932  XXXXXXXXXXX----PPGSGGGQKWTTLEHNGVIFPPPYKPHGVKMLYKGQPVDLTPEQE 1099
                           PPGSGGG+KWTTLEHNGVIFPPPYKPHGVKMLY GQPVDLTPEQE
Sbjct: 337  TKMMKNSQFSKTMKVPPGSGGGKKWTTLEHNGVIFPPPYKPHGVKMLYNGQPVDLTPEQE 396

Query: 1100 EVATMFAVMKDTDYASKKQFIENFMHDWRLMLGKNHIIKKFELCDFTPIYEWHLKEKEKK 1279
            EVATMFAVMKDTDYA K  FIENF  DWR +LGKNH+IKKFELCDFTPIYEWHL+EKEKK
Sbjct: 397  EVATMFAVMKDTDYAGKPTFIENFFTDWRTLLGKNHVIKKFELCDFTPIYEWHLREKEKK 456

Query: 1280 KQMTSXXXXXXXXXXXXXXXXYMWAIVDGVKEKVGNFRVEPPGLFRGRGEHPKMGKLKQR 1459
            KQMT+                YMWA+VDGVKEKVGNFRVEPPGLFRGRGEHPKMGKLK+R
Sbjct: 457  KQMTTEEKKALREEKLKQEEKYMWAVVDGVKEKVGNFRVEPPGLFRGRGEHPKMGKLKRR 516

Query: 1460 IRPKDITINIGKDAPIPECPIPGERWKEIKHDNTVTWLAFWNDPINPKEFKYVFLAASSS 1639
            I+P DITINIG+DAP+PECPIPGERWKE+KHDNTVTWLAFWNDPI+ K+FKYVFLAASSS
Sbjct: 517  IKPSDITINIGEDAPVPECPIPGERWKEVKHDNTVTWLAFWNDPISQKDFKYVFLAASSS 576

Query: 1640 LKGQSDKEKYEKARLLKDYIQNIRANYTRDFNSKDPTKRQIAVATYLIDKLALRAGNEKD 1819
            LKGQSDKEKYEK+R LK YIQ+IR NYT+DF SKD  KRQIAVATYLIDKLALRAGNEKD
Sbjct: 577  LKGQSDKEKYEKSRKLKGYIQDIRDNYTKDFRSKDVAKRQIAVATYLIDKLALRAGNEKD 636

Query: 1820 DDEADTVGCCTLKVENVELVPPNKLKFDFLGKDSIRYLNTVEVEPPVYKAIGDFQTAKRS 1999
            +DEADTVGCCTLKV+NV  +PPNK++FDFLGKDSIRY NTVEVE  VYKAI  F+  K+ 
Sbjct: 637  EDEADTVGCCTLKVDNVTCLPPNKIQFDFLGKDSIRYFNTVEVEELVYKAIEGFRAGKKP 696

Query: 2000 NXXXXXXXXXXXXXXXTSKLNTHLKELMPGLTAKVFRTYNASITLDAILNKETKDGTAPE 2179
                            T++LN HLK+LMPGLTAKVFRTYNASITLD IL+KET+DGT  E
Sbjct: 697  G-------KDLFDQLDTTRLNAHLKDLMPGLTAKVFRTYNASITLDGILHKETEDGTLLE 749

Query: 2180 KIAVYQHANKEVAIICNHQRSVSKSHENQMSKLNEKINDLKAQREELSTDLNRARKGKPP 2359
            KIAVYQ ANKEVAIICNHQRSVSKSHE+QM++LNE+I+DLKAQR+EL  DL++A+KGKP 
Sbjct: 750  KIAVYQRANKEVAIICNHQRSVSKSHESQMTRLNERIDDLKAQRDELKVDLSKAKKGKPL 809

Query: 2360 LKDKEGKTKKNLAPEAIGKKIAQIDAKIEKMEIDKQIKEDLKTVALGTSKINYLDPRISV 2539
              DKEGK K+NLAP+AI KKIA I+ KIEKME++K+ KEDLKTVALGTSKINYLDPRI+V
Sbjct: 810  GYDKEGKQKRNLAPDAIEKKIAAIETKIEKMEMEKKTKEDLKTVALGTSKINYLDPRITV 869

Query: 2540 AWCKRHEVPIEKIFNKSL 2593
            AWCKRHEVPIEKIFNKSL
Sbjct: 870  AWCKRHEVPIEKIFNKSL 887


>ref|XP_002265386.1| PREDICTED: DNA topoisomerase 1-like [Vitis vinifera]
          Length = 883

 Score =  906 bits (2342), Expect = 0.0
 Identities = 496/847 (58%), Positives = 560/847 (66%), Gaps = 10/847 (1%)
 Frame = +2

Query: 83   KTDTQKDAGSNLVSNQIAQNGESSHLQNVKLLSKASSEKPXXXXXTSVAVQRK-RSMEVE 259
            KT  +  +G +L S  +     SSH    K+  K SS+         + +Q K R     
Sbjct: 78   KTYVRSSSGKSLGSKGLNSPSLSSHPPETKVGVKESSDDSEDEIPLLLKLQLKSRKGASS 137

Query: 260  KICMHSKGDNFTSGSAGNMDLSKSNIK--SENSDDDKPLSLKYSSSGIVNRSASLQAVKA 433
               + SKG +  + S      +K N K  S++S+D+ PLS K+         ASL  +  
Sbjct: 138  SKLLDSKGLSSPASSRPQSQKAKVNNKNLSDDSEDEIPLSSKFRLK--TGMGASLDKLDN 195

Query: 434  SQSTKPLPLSVKLXXXXXXXXXXXXXXXPLLSRFQSKAIGGSSMKDSNVAEXXXXXXXXX 613
                KPL  ++K                            G S KD    +         
Sbjct: 196  FDEKKPLTSTLKP--------------------------NGISKKDDERVKSPK------ 223

Query: 614  XXXXXXXXXXXXXXXGGQKRPLSGANPXXXXXXXXXXXXXXXXXXXXXQEDFVKKESKTD 793
                           G  KRPL  AN                      Q   VK E K D
Sbjct: 224  ---------------GQNKRPLGQANTSHHSSSKKPKLLDGSVKGKVKQVS-VKAEQKDD 267

Query: 794  DND-------HLPIAQRMKKTVSSNSASISKNALHXXXXXXXXXXXXXXXXXXXXXXXXX 952
            D+D       + P  +R+KK+VSS++   SK  +                          
Sbjct: 268  DDDDNDDDDEYTPTVKRLKKSVSSDNKKASKTKVIPSSRKKATKKAKKSKKLAKSSKYSK 327

Query: 953  XXXXPPGSGGGQKWTTLEHNGVIFPPPYKPHGVKMLYKGQPVDLTPEQEEVATMFAVMKD 1132
                PP SG GQKWTTLEHNGVIFPPPYKPHGVKMLY G+PVDLTPEQEEVATMFAVMKD
Sbjct: 328  STKVPPNSGEGQKWTTLEHNGVIFPPPYKPHGVKMLYNGRPVDLTPEQEEVATMFAVMKD 387

Query: 1133 TDYASKKQFIENFMHDWRLMLGKNHIIKKFELCDFTPIYEWHLKEKEKKKQMTSXXXXXX 1312
            TDYA+K +FIENFM+DWR+ LGKNH+IKKFELCDFTPIYEWH KEKEKKKQMT+      
Sbjct: 388  TDYATKPRFIENFMNDWRVRLGKNHVIKKFELCDFTPIYEWHEKEKEKKKQMTTEEKKAL 447

Query: 1313 XXXXXXXXXXYMWAIVDGVKEKVGNFRVEPPGLFRGRGEHPKMGKLKQRIRPKDITINIG 1492
                      YMWA+VDGVKEKVGNFRVEPPGLFRGRGEHPKMGKLK+RI P DITINIG
Sbjct: 448  KEEKLKQEDKYMWAVVDGVKEKVGNFRVEPPGLFRGRGEHPKMGKLKKRICPSDITINIG 507

Query: 1493 KDAPIPECPIPGERWKEIKHDNTVTWLAFWNDPINPKEFKYVFLAASSSLKGQSDKEKYE 1672
            K+AP+PECPIPGERWKE++HDNTVTWLAFWNDPINPKEFKYVFLAASSSLKGQSDKEKYE
Sbjct: 508  KEAPVPECPIPGERWKEVRHDNTVTWLAFWNDPINPKEFKYVFLAASSSLKGQSDKEKYE 567

Query: 1673 KARLLKDYIQNIRANYTRDFNSKDPTKRQIAVATYLIDKLALRAGNEKDDDEADTVGCCT 1852
            KARLLKDYIQNIRA YT+DF +KD  KRQIAVATYLIDKLALRAGNEKDDDEADTVGCCT
Sbjct: 568  KARLLKDYIQNIRATYTKDFTNKDTMKRQIAVATYLIDKLALRAGNEKDDDEADTVGCCT 627

Query: 1853 LKVENVELVPPNKLKFDFLGKDSIRYLNTVEVEPPVYKAIGDFQTAKRSNXXXXXXXXXX 2032
            LKVENV LVPPNKL+FDFLGKDSIRY NTVEVE PVYKAIG F+T K             
Sbjct: 628  LKVENVALVPPNKLEFDFLGKDSIRYFNTVEVELPVYKAIGQFKTGKSGG-------DDL 680

Query: 2033 XXXXXTSKLNTHLKELMPGLTAKVFRTYNASITLDAILNKETKDGTAPEKIAVYQHANKE 2212
                 TSKLN HLKELMPGLTAKVFRTYNASITLD +LN+E + G A EKI +YQHANKE
Sbjct: 681  FDKLDTSKLNAHLKELMPGLTAKVFRTYNASITLDEMLNREARGGDAMEKIVIYQHANKE 740

Query: 2213 VAIICNHQRSVSKSHENQMSKLNEKINDLKAQREELSTDLNRARKGKPPLKDKEGKTKKN 2392
            VAIICNHQRSVSKSH+ QMS+L+EK+ +L+   +EL TDL RA+KGKPPLKD +GK KKN
Sbjct: 741  VAIICNHQRSVSKSHDVQMSRLSEKMRELQGVLDELKTDLARAKKGKPPLKDSDGKPKKN 800

Query: 2393 LAPEAIGKKIAQIDAKIEKMEIDKQIKEDLKTVALGTSKINYLDPRISVAWCKRHEVPIE 2572
            + PE + +KIAQ + KIEKME D + KEDLKTVALGTSKINYLDPRISVAWCKR EVPIE
Sbjct: 801  MTPEVLERKIAQTNTKIEKMERDMKTKEDLKTVALGTSKINYLDPRISVAWCKRQEVPIE 860

Query: 2573 KIFNKSL 2593
            KIFNKSL
Sbjct: 861  KIFNKSL 867


>ref|XP_006659124.1| PREDICTED: DNA topoisomerase 1-like [Oryza brachyantha]
          Length = 911

 Score =  900 bits (2326), Expect = 0.0
 Identities = 499/902 (55%), Positives = 589/902 (65%), Gaps = 39/902 (4%)
 Frame = +2

Query: 5    EDDDAPLVFRRANSSSKQRHLSSTSKKTDTQKDAGSNLVSNQIAQNGESSHLQNVK--LL 178
            +DD+ P+ F+R+++S K R   + +K   +  + GS      +A + + + L  V   L 
Sbjct: 12   DDDEGPVSFKRSSASVKNR--PTPTKPEGSSGNVGSVRSPKSVASSQQRNGLTGVSRPLQ 69

Query: 179  SKASSEKPXXXXXTSVAVQRKRSME---------------VEKICMHSKGDNFTSG---S 304
             +  S  P      SV +   +                  VE     S+ D+   G    
Sbjct: 70   QRPQSSTPNPRPLGSVQLNSSKEHNNNSNAMDKSKLKRPFVEDKSDDSEDDHKPIGLRRK 129

Query: 305  AGNMDLSKSNIKSE---NSDDDKPLSLKYSSSGIVNRSAS-----------LQAVKASQS 442
              + +  K+ + SE   +SDD+KPLSLK +S+   + S +           +Q    S+ 
Sbjct: 130  VEDKNFKKAAVGSETADDSDDNKPLSLKINSTKTPSNSTNKASVLKVTPKIVQPADDSED 189

Query: 443  TKPL----PLSVKLXXXXXXXXXXXXXXXPLLSRFQSKAIGGSSMKDSNVAEXXXXXXXX 610
             KPL    P    L               PL +RF SK  G +S   S+  +        
Sbjct: 190  EKPLARRLPAKTTLKSGANASDDSEDEK-PLAARF-SKVTGSASASISSSKDKVQSANLK 247

Query: 611  XXXXXXXXXXXXXXXXGGQKRPLSGANPXXXXXXXXXXXXXXXXXXXXXQEDFVKKESKT 790
                               KRP+   N                          VK+ESK 
Sbjct: 248  PSSSSKVSNNDTNTSRNSIKRPIDNNNQSISALKKARPSDVSVSAS-------VKRESKA 300

Query: 791  DDNDHLPIAQRMKKTVSSNSASISKNAL-HXXXXXXXXXXXXXXXXXXXXXXXXXXXXXP 967
            DDND++P++QR+K   SS S   +KN +                               P
Sbjct: 301  DDNDNIPLSQRLKMGESSKSKPPAKNIVKKNPSSFKKDSKKMKTKKTMKNSQFSKTMKVP 360

Query: 968  PGSGGGQKWTTLEHNGVIFPPPYKPHGVKMLYKGQPVDLTPEQEEVATMFAVMKDTDYAS 1147
            PGSGGGQKWTTL HNGVIFPPPYKPHGVKMLY GQPVDLTPEQEEVATMF+VMKDTDYAS
Sbjct: 361  PGSGGGQKWTTLVHNGVIFPPPYKPHGVKMLYNGQPVDLTPEQEEVATMFSVMKDTDYAS 420

Query: 1148 KKQFIENFMHDWRLMLGKNHIIKKFELCDFTPIYEWHLKEKEKKKQMTSXXXXXXXXXXX 1327
            K+ FI+NF  DWR +LGKNHIIKKFELCDFTPIYEWHL+EKEKKKQMTS           
Sbjct: 421  KQTFIDNFFTDWRKILGKNHIIKKFELCDFTPIYEWHLREKEKKKQMTSEEKKAVKEEKL 480

Query: 1328 XXXXXYMWAIVDGVKEKVGNFRVEPPGLFRGRGEHPKMGKLKQRIRPKDITINIGKDAPI 1507
                 YMWA+VDGVKEKVGNFRVEPPGLFRGRGEHPKMGKLK+RI+P DITINIGK API
Sbjct: 481  KQEEKYMWAVVDGVKEKVGNFRVEPPGLFRGRGEHPKMGKLKRRIQPSDITINIGKGAPI 540

Query: 1508 PECPIPGERWKEIKHDNTVTWLAFWNDPINPKEFKYVFLAASSSLKGQSDKEKYEKARLL 1687
            PECPIPGE WKE+KHDNTVTWLAFWNDPI+ K+FKYVFLAASS+LKGQSDKEKYEK+R L
Sbjct: 541  PECPIPGESWKEVKHDNTVTWLAFWNDPISQKDFKYVFLAASSALKGQSDKEKYEKSRKL 600

Query: 1688 KDYIQNIRANYTRDFNSKDPTKRQIAVATYLIDKLALRAGNEKDDDEADTVGCCTLKVEN 1867
            K +I  IR  YT+DF SKD TK+QIAVATYLIDKLALRAGNEKDDDEA+TVGCCTLKV+N
Sbjct: 601  KHHIHKIRDTYTKDFRSKDKTKKQIAVATYLIDKLALRAGNEKDDDEAETVGCCTLKVDN 660

Query: 1868 VELVPPNKLKFDFLGKDSIRYLNTVEVEPPVYKAIGDFQTAKRSNXXXXXXXXXXXXXXX 2047
            V  VPPN L+FDFLGKDSIRY NTVEVE PVYKAI +F+  K+                 
Sbjct: 661  VTCVPPNNLQFDFLGKDSIRYFNTVEVELPVYKAIEEFRAGKKPG-------DDLFDKLD 713

Query: 2048 TSKLNTHLKELMPGLTAKVFRTYNASITLDAILNKETKDGTAPEKIAVYQHANKEVAIIC 2227
            T++LN HLK+LMPGLTAKVFRTYNASITLD IL+KET+DGT  EKIAVYQ ANKEVAIIC
Sbjct: 714  TTRLNAHLKDLMPGLTAKVFRTYNASITLDDILHKETEDGTLLEKIAVYQRANKEVAIIC 773

Query: 2228 NHQRSVSKSHENQMSKLNEKINDLKAQREELSTDLNRARKGKPPLKDKEGKTKKNLAPEA 2407
            NHQRSVSKSH++QM++LNEKI++LKAQR+EL  DL++ +KGK    DK+GK K+NLAPEA
Sbjct: 774  NHQRSVSKSHDSQMTRLNEKIDELKAQRDELKADLSKVKKGKSLGYDKDGKPKRNLAPEA 833

Query: 2408 IGKKIAQIDAKIEKMEIDKQIKEDLKTVALGTSKINYLDPRISVAWCKRHEVPIEKIFNK 2587
              KKI+Q++ KIEKME+DK+IKEDLKTVALGTSKINYLDPRI+VAWCKRHEVPIEKIFNK
Sbjct: 834  FEKKISQVETKIEKMEMDKKIKEDLKTVALGTSKINYLDPRITVAWCKRHEVPIEKIFNK 893

Query: 2588 SL 2593
            SL
Sbjct: 894  SL 895


>ref|XP_002443872.1| hypothetical protein SORBIDRAFT_07g003610 [Sorghum bicolor]
            gi|241940222|gb|EES13367.1| hypothetical protein
            SORBIDRAFT_07g003610 [Sorghum bicolor]
          Length = 921

 Score =  900 bits (2325), Expect = 0.0
 Identities = 505/918 (55%), Positives = 592/918 (64%), Gaps = 54/918 (5%)
 Frame = +2

Query: 2    EEDDDAPLVFRRANSS--------SKQRHLSSTSKKTDTQKDAGSN----------LVSN 127
            ++DDD PL F+R ++S        SKQ   S  + +    K  GS+           V++
Sbjct: 14   DDDDDVPLSFKRTSNSLKTARPTPSKQEGSSGGAARPTPSKQEGSSGGSGNPARPKPVAH 73

Query: 128  QIAQNGES--SHLQNVKLLSKASSEKPXXXXXTSVAVQRK----RSMEVEKICMHSKGDN 289
             + +NG +  S   ++K LS   + +P      + + Q       S++  K+      D 
Sbjct: 74   NLQKNGVTGASRPVHMKPLSSTPNHRPSGSGQPNSSAQHSSKGNNSIDKSKLKRPLVKDE 133

Query: 290  FTSGSAGNMDLS------KSNIK---------SENSDDDKPLSLKYSSSGIVNRSASLQA 424
             +  S   + +       +  +K          ++ DDDKPLSLK +SS + N S S   
Sbjct: 134  RSDDSDDEVPIGLRRKAEEKKLKRVDTAVHKADDSDDDDKPLSLKINSSKMSNNSVSK-- 191

Query: 425  VKASQSTKPLPLSVKLXXXXXXXXXXXXXXXPLLSRFQSKAI---GGSSMKDSN----VA 583
                      P+  ++               PL SR  + A    GG+  +DS     +A
Sbjct: 192  ----------PVLQRIAPKVEQPDEDSDDDKPLASRLPNNACPKSGGNVSEDSEDEKPLA 241

Query: 584  EXXXXXXXXXXXXXXXXXXXXXXXXGGQ----KRPLSGANPXXXXXXXXXXXXXXXXXXX 751
                                      GQ    KRPL  +N                    
Sbjct: 242  ARFSKVAGSGNLKTASSSKGLNSDTNGQRSLGKRPLDNSNQTSLAIKKAKPSNVSASAS- 300

Query: 752  XXQEDFVKKESKTDDNDHLPIAQRMKKTVSSN----SASISKNALHXXXXXXXXXXXXXX 919
                  VK+E KTDDND+ P+AQR+K   SS     + SI K +                
Sbjct: 301  ------VKREIKTDDNDNTPLAQRLKMGESSKGKPPAKSIVKKSPASAKDIKKLKGKGKL 354

Query: 920  XXXXXXXXXXXXXXXPPGSGGGQKWTTLEHNGVIFPPPYKPHGVKMLYKGQPVDLTPEQE 1099
                           PPGSG G+KWTTLEHNGVIFPPPYKPHGVKMLY GQPVDLTPEQE
Sbjct: 355  KKNMKNSQFSKTMRVPPGSGEGKKWTTLEHNGVIFPPPYKPHGVKMLYNGQPVDLTPEQE 414

Query: 1100 EVATMFAVMKDTDYASKKQFIENFMHDWRLMLGKNHIIKKFELCDFTPIYEWHLKEKEKK 1279
            EVATMFAVMKDTDYA K  FI+NF  DWR +LGKNHIIKKFELCDFTPIYEWHL+EKEKK
Sbjct: 415  EVATMFAVMKDTDYAGKPTFIDNFFTDWRKILGKNHIIKKFELCDFTPIYEWHLREKEKK 474

Query: 1280 KQMTSXXXXXXXXXXXXXXXXYMWAIVDGVKEKVGNFRVEPPGLFRGRGEHPKMGKLKQR 1459
            KQMT+                YMWA+VDGVKEKVGNFRVEPPGLFRGRGEHPKMGKLK+R
Sbjct: 475  KQMTTEEKKALREEKLKQEEKYMWAVVDGVKEKVGNFRVEPPGLFRGRGEHPKMGKLKRR 534

Query: 1460 IRPKDITINIGKDAPIPECPIPGERWKEIKHDNTVTWLAFWNDPINPKEFKYVFLAASSS 1639
            I+P DITINIGK AP+PECPIPGE WKEIKHDNTVTWLAFWNDPI+ K+FKYVFLAASSS
Sbjct: 535  IQPSDITINIGKGAPVPECPIPGESWKEIKHDNTVTWLAFWNDPISQKDFKYVFLAASSS 594

Query: 1640 LKGQSDKEKYEKARLLKDYIQNIRANYTRDFNSKDPTKRQIAVATYLIDKLALRAGNEKD 1819
            LKGQSDKEKYEK+R LK +IQ IR NYT+DF +KD T+RQIAVATYLIDKLALRAGNEKD
Sbjct: 595  LKGQSDKEKYEKSRKLKGHIQRIRENYTKDFKNKDVTRRQIAVATYLIDKLALRAGNEKD 654

Query: 1820 DDEADTVGCCTLKVENVELVPPNKLKFDFLGKDSIRYLNTVEVEPPVYKAIGDFQTAKRS 1999
            DDEADTVGCCTLKV+NV  +PPNK++FDFLGKDSIRY NTVEVE  VYKAI  F+  K+ 
Sbjct: 655  DDEADTVGCCTLKVDNVTCMPPNKIQFDFLGKDSIRYFNTVEVEELVYKAIEGFRAGKKP 714

Query: 2000 NXXXXXXXXXXXXXXXTSKLNTHLKELMPGLTAKVFRTYNASITLDAILNKETKDGTAPE 2179
                            T++LN HLK+LMPGLTAKVFRTYNASITLD IL++ET+DGT  E
Sbjct: 715  G-------EGLFDKIDTTRLNAHLKDLMPGLTAKVFRTYNASITLDGILHEETEDGTLLE 767

Query: 2180 KIAVYQHANKEVAIICNHQRSVSKSHENQMSKLNEKINDLKAQREELSTDLNRARKGKPP 2359
            KIAVYQ ANKEVAIICNHQRSVSKSHE+QM KLNEKI++LK+Q EEL  DL++A+KGKP 
Sbjct: 768  KIAVYQRANKEVAIICNHQRSVSKSHESQMIKLNEKIDELKSQMEELKADLSKAKKGKPL 827

Query: 2360 LKDKEGKTKKNLAPEAIGKKIAQIDAKIEKMEIDKQIKEDLKTVALGTSKINYLDPRISV 2539
              DKEGK K+NLAPEAI KKIA ++ KI+KME+DK+IKEDLKTVALGTSKINYLDPRI+V
Sbjct: 828  GYDKEGKQKRNLAPEAIEKKIAMVEGKIDKMEMDKKIKEDLKTVALGTSKINYLDPRITV 887

Query: 2540 AWCKRHEVPIEKIFNKSL 2593
            AWCKRHEVPIEKIFNKSL
Sbjct: 888  AWCKRHEVPIEKIFNKSL 905


>ref|NP_001061015.1| Os08g0154600 [Oryza sativa Japonica Group]
            gi|27817923|dbj|BAC55688.1| putative DNA topoisomerase I
            [Oryza sativa Japonica Group]
            gi|113622984|dbj|BAF22929.1| Os08g0154600 [Oryza sativa
            Japonica Group] gi|222639933|gb|EEE68065.1| hypothetical
            protein OsJ_26075 [Oryza sativa Japonica Group]
          Length = 916

 Score =  894 bits (2310), Expect = 0.0
 Identities = 502/906 (55%), Positives = 589/906 (65%), Gaps = 43/906 (4%)
 Frame = +2

Query: 5    EDDDAPLVFRRANSSSKQRH--------------LSSTSKKTDTQKDAGSNLVSNQIAQN 142
            +D++ P+ F+R+++S K R               + S       Q+  G   VS  + Q 
Sbjct: 12   DDEEGPISFKRSSTSVKNRPTPTKQEGSSGNAGPIRSPKAVASNQQKNGLTGVSRPLQQR 71

Query: 143  GESSHLQNVKLLSKA---SSEKPXXXXXTSVAVQRKRSMEVEKICMHSKGDNFTSG---S 304
             +SS   N + L      SS++       SV   + +   VE     S+ D+   G    
Sbjct: 72   PQSSS-PNPRPLGSGQPNSSKEHSSHNSNSVDKSKLKRPFVEDKSDDSEDDHKPIGLRRK 130

Query: 305  AGNMDLSKSNIKS---ENSDDDKPLSLKYSSSGIVNRSASLQAVKA-----------SQS 442
              + +L K  + S    +SDDDKPLSLK +S+   + SA+   V             S+ 
Sbjct: 131  VEDRNLKKPAVGSGTANDSDDDKPLSLKINSTKTPSSSANKAIVLKTTPKIEQPGDDSED 190

Query: 443  TKPL----PLSVKLXXXXXXXXXXXXXXXPLLSRFQSKAIGGSSMKDSNVAEXXXXXXXX 610
             KPL    P +  L               PL +RF SK  G +S   S+  +        
Sbjct: 191  DKPLASRLPTNAALKRGGNVSDDSEDEK-PLAARF-SKVTGNASASISSSKDKVLSASIK 248

Query: 611  XXXXXXXXXXXXXXXXGGQKRPLSGANPXXXXXXXXXXXXXXXXXXXXXQEDFVKKESKT 790
                               KRP+   N                          VK+E K 
Sbjct: 249  ASSSSKMSNNDASTSRNSIKRPIDNNNQTSSALKKARPSDVSASAS-------VKREPKA 301

Query: 791  DDNDHLPIAQRMKKTVSSNSASISKNALHXXXXXXXXXXXXXXXXXXXXXXXXXXXXX-- 964
            DDND++P++QR+K   SS S   +KN +                                
Sbjct: 302  DDNDNVPLSQRLKMGESSKSKPPAKNIVKKSPSSLKKDNKKMKMKMKTKKTMKNSQFSKT 361

Query: 965  ---PPGSGGGQKWTTLEHNGVIFPPPYKPHGVKMLYKGQPVDLTPEQEEVATMFAVMKDT 1135
               PPGSGGGQKWTTL H+GVIFPPPYKPHGVKMLY GQPVDLTPEQEEVATMFAVMKDT
Sbjct: 362  MKVPPGSGGGQKWTTLVHSGVIFPPPYKPHGVKMLYNGQPVDLTPEQEEVATMFAVMKDT 421

Query: 1136 DYASKKQFIENFMHDWRLMLGKNHIIKKFELCDFTPIYEWHLKEKEKKKQMTSXXXXXXX 1315
            DYASK+ FI+NF  DWR +LGKNH+IKKFELCDFTPIYEWHL+EKEKKKQMTS       
Sbjct: 422  DYASKQTFIDNFFTDWRKILGKNHVIKKFELCDFTPIYEWHLREKEKKKQMTSEEKKALK 481

Query: 1316 XXXXXXXXXYMWAIVDGVKEKVGNFRVEPPGLFRGRGEHPKMGKLKQRIRPKDITINIGK 1495
                     YMWAIVDGVKEKVGNFRVEPPGLFRGRGEHPKMGKLK+RI+P DITINIGK
Sbjct: 482  EEKLKQEEKYMWAIVDGVKEKVGNFRVEPPGLFRGRGEHPKMGKLKRRIKPSDITINIGK 541

Query: 1496 DAPIPECPIPGERWKEIKHDNTVTWLAFWNDPINPKEFKYVFLAASSSLKGQSDKEKYEK 1675
             APIPECPIPGE WKE+KHDNTVTWLAFWNDPI+ K+FKYVFLAASS+LKGQSDKEKYEK
Sbjct: 542  GAPIPECPIPGESWKEVKHDNTVTWLAFWNDPISQKDFKYVFLAASSALKGQSDKEKYEK 601

Query: 1676 ARLLKDYIQNIRANYTRDFNSKDPTKRQIAVATYLIDKLALRAGNEKDDDEADTVGCCTL 1855
            +R LK ++  IR  YT+DF SKD TK+QIAVATYLIDKLALRAGNEKD+DEA+TVGCCTL
Sbjct: 602  SRKLKHHVHKIRDTYTKDFRSKDKTKKQIAVATYLIDKLALRAGNEKDEDEAETVGCCTL 661

Query: 1856 KVENVELVPPNKLKFDFLGKDSIRYLNTVEVEPPVYKAIGDFQTAKRSNXXXXXXXXXXX 2035
            KV+NV  VPPNKL+FDFLGKDSIRY NTVEVE  VYKAI +F+  K+             
Sbjct: 662  KVDNVTCVPPNKLQFDFLGKDSIRYFNTVEVELLVYKAIEEFRAGKKPG-------QDLF 714

Query: 2036 XXXXTSKLNTHLKELMPGLTAKVFRTYNASITLDAILNKETKDGTAPEKIAVYQHANKEV 2215
                T++LN HLK+LMPGLTAKVFRTYNASITLD IL+KET+DGT  EKIAVYQ ANKEV
Sbjct: 715  DKLDTTRLNAHLKDLMPGLTAKVFRTYNASITLDDILHKETEDGTLLEKIAVYQRANKEV 774

Query: 2216 AIICNHQRSVSKSHENQMSKLNEKINDLKAQREELSTDLNRARKGKPPLKDKEGKTKKNL 2395
            AIICNHQRSVSKSH++QM++LNEKI++LKAQR+EL  DL++ RKGK    DK+GK K+NL
Sbjct: 775  AIICNHQRSVSKSHDSQMTRLNEKIDELKAQRDELKADLSKVRKGKNLGNDKDGKPKRNL 834

Query: 2396 APEAIGKKIAQIDAKIEKMEIDKQIKEDLKTVALGTSKINYLDPRISVAWCKRHEVPIEK 2575
            APEA  KKI+QI+ KIEKME+DK+IKEDLKTVALGTSKINYLDPRI+VAWCKRHEVPIEK
Sbjct: 835  APEAFEKKISQIETKIEKMEMDKKIKEDLKTVALGTSKINYLDPRITVAWCKRHEVPIEK 894

Query: 2576 IFNKSL 2593
            IFNKSL
Sbjct: 895  IFNKSL 900


>ref|XP_002300344.1| DNA topoisomerase family protein [Populus trichocarpa]
            gi|222847602|gb|EEE85149.1| DNA topoisomerase family
            protein [Populus trichocarpa]
          Length = 877

 Score =  894 bits (2309), Expect = 0.0
 Identities = 498/874 (56%), Positives = 570/874 (65%), Gaps = 10/874 (1%)
 Frame = +2

Query: 2    EEDDDAPLVFRR-ANSSSKQRHLSSTSKKTDTQKDAGSNLVSNQIAQNGESSHLQNVKLL 178
            ++DDD P+VF+R  NS+SKQ  L+  +KK  +     +    N   Q G+S    +    
Sbjct: 18   DDDDDGPIVFKRGGNSTSKQNQLNPEAKKPSSSSQNSNGQSLN--LQKGKSPIPSSNASP 75

Query: 179  SKASSEKPXXXXXTSVAVQRKRSMEVEKICMHSKGDNFTSGSA-----GNMDLSKSNIKS 343
             K+S+  P     ++ A   K  +   +  + S  D     S         + +KS +  
Sbjct: 76   MKSSTGSPKASASSAKASPLKSPLTYTR-ALTSSNDQLKQASKQVVSNAVKEETKSIVDD 134

Query: 344  ENSDDDKPLSLKY-SSSGIVNRSASLQAVKASQSTKPLPLSVKLXXXXXXXXXXXXXXXP 520
            E+S+DDKPLS +   S+  VN+      V A    K  P                    P
Sbjct: 135  EDSEDDKPLSSRIKGSTNNVNK-----GVTAPAHVKDEP--------------SDDDEVP 175

Query: 521  LLSRFQSKA-IGGSSMKDSNVAEXXXXXXXXXXXXXXXXXXXXXXXXGGQKRPLSGANPX 697
            L SRF  K+  G SS K    +E                           KRP+    P 
Sbjct: 176  LSSRFAMKSNAGTSSSKSIRSSEIRPFPSKSQLNGSTKNDKQQKSSVVPTKRPMDNKVPS 235

Query: 698  XXXXXXXXXXXXXXXXXXXXQEDFVKKESKTDDNDHLPIAQRMKKTVSS-NSASISKNAL 874
                                Q   VK E K DD+DHL I+QRMKK  SS N +S +K  +
Sbjct: 236  NHSSAKKPKLLDACTTTKVKQVT-VKVEQKADDDDHLTISQRMKKADSSANKSSFAKKKV 294

Query: 875  HXXXXXXXXXXXXXXXXXXXXXXXXXXXXXPPGSGGGQ-KWTTLEHNGVIFPPPYKPHGV 1051
                                           PGS  GQ KWTTL HNGVIFPPPYKPHGV
Sbjct: 295  TKVVSSSLKKTTQKNKKQMKNSKYSKSTKVQPGSSDGQKKWTTLVHNGVIFPPPYKPHGV 354

Query: 1052 KMLYKGQPVDLTPEQEEVATMFAVMKDTDYASKKQFIENFMHDWRLMLGKNHIIKKFELC 1231
            K+LYKG+P+DLTPEQEEVATMFAVMKDTDY  K QF +NF +DWR +LGKNH+I+K + C
Sbjct: 355  KILYKGKPIDLTPEQEEVATMFAVMKDTDYVQKPQFRQNFWNDWRKLLGKNHVIQKLDDC 414

Query: 1232 DFTPIYEWHLKEKEKKKQMTSXXXXXXXXXXXXXXXXYMWAIVDGVKEKVGNFRVEPPGL 1411
            DF PIYEWH +EKEKKKQM++                YMWAIV+GVKEKVGNFRVEPPGL
Sbjct: 415  DFNPIYEWHQQEKEKKKQMSTEEKKVLKEEKLKQEEKYMWAIVNGVKEKVGNFRVEPPGL 474

Query: 1412 FRGRGEHPKMGKLKQRIRPKDITINIGKDAPIPECPIPGERWKEIKHDNTVTWLAFWNDP 1591
            FRGRGEHPKMGKLK RIRP DITINIGKDAPIPECPIPGERWKE+KHDNTVTWLAFWNDP
Sbjct: 475  FRGRGEHPKMGKLKSRIRPSDITINIGKDAPIPECPIPGERWKEVKHDNTVTWLAFWNDP 534

Query: 1592 INPKEFKYVFLAASSSLKGQSDKEKYEKARLLKDYIQNIRANYTRDFNSKDPTKRQIAVA 1771
            INPKEFKYVFLAASSSLKGQSDKEKYEKAR LKDYI NIRA YT+DF SKD TKRQIAVA
Sbjct: 535  INPKEFKYVFLAASSSLKGQSDKEKYEKARKLKDYIHNIRAAYTKDFASKDITKRQIAVA 594

Query: 1772 TYLIDKLALRAGNEKDDDEADTVGCCTLKVENVELVPPNKLKFDFLGKDSIRYLNTVEVE 1951
            TYLIDKLALRAGNEKDDDEADTVGCCTLKV NVE +PPNKLKFDFLGKDSIRY NTVEVE
Sbjct: 595  TYLIDKLALRAGNEKDDDEADTVGCCTLKVANVECIPPNKLKFDFLGKDSIRYENTVEVE 654

Query: 1952 PPVYKAIGDFQTAKRSNXXXXXXXXXXXXXXXTSKLNTHLKELMPGLTAKVFRTYNASIT 2131
             PVYKAIG FQ AK+                 TSKLN HLKELMPGLTAKVFRTYNASIT
Sbjct: 655  LPVYKAIGHFQVAKKQT-------DDLFDSLDTSKLNAHLKELMPGLTAKVFRTYNASIT 707

Query: 2132 LDAILNKETKDGTAPEKIAVYQHANKEVAIICNHQRSVSKSHENQMSKLNEKINDLKAQR 2311
            LD  L +ET+DG   EKI +Y  ANK+VAIICNHQR++SKSH+ QMS+L EKI +LK+  
Sbjct: 708  LDEKLYEETEDGDVAEKIVIYNQANKQVAIICNHQRTISKSHDAQMSRLTEKIEELKSTL 767

Query: 2312 EELSTDLNRARKGKPPLKDKEGKTKKNLAPEAIGKKIAQIDAKIEKMEIDKQIKEDLKTV 2491
            +EL TDL+RA+KGKPPLK  +GK K++L PEAI KKIA  + KIEKME+  + KEDLKTV
Sbjct: 768  KELKTDLDRAKKGKPPLKGADGKQKRSLTPEAIEKKIATTNQKIEKMEMAMKTKEDLKTV 827

Query: 2492 ALGTSKINYLDPRISVAWCKRHEVPIEKIFNKSL 2593
            ALGTSKINYLDPRI+VAWCKRHEVPI+KIFNKSL
Sbjct: 828  ALGTSKINYLDPRITVAWCKRHEVPIDKIFNKSL 861


>gb|EAZ05628.1| hypothetical protein OsI_27847 [Oryza sativa Indica Group]
          Length = 916

 Score =  892 bits (2306), Expect = 0.0
 Identities = 501/906 (55%), Positives = 589/906 (65%), Gaps = 43/906 (4%)
 Frame = +2

Query: 5    EDDDAPLVFRRANSSSKQRH--------------LSSTSKKTDTQKDAGSNLVSNQIAQN 142
            +D++ P+ F+R+++S K R               + S       Q+  G   VS  + Q 
Sbjct: 12   DDEEGPISFKRSSTSVKNRPTPTKQEGSSGNAGPIRSPKAVASNQQKNGLTGVSRPLQQR 71

Query: 143  GESSHLQNVKLLSKA---SSEKPXXXXXTSVAVQRKRSMEVEKICMHSKGDNFTSG---S 304
             +SS   N + L      SS++       SV   + +   VE     S+ D+   G    
Sbjct: 72   PQSSS-PNPRPLGSGQPNSSKEHSSHNSNSVDKSKLKRPFVEDKSDDSEDDHKPIGLRRK 130

Query: 305  AGNMDLSKSNIKS---ENSDDDKPLSLKYSSSGIVNRSASLQAVKA-----------SQS 442
              + +L K  + S    +SDDDKPLSLK +S+   + SA+   V             S+ 
Sbjct: 131  VEDRNLKKPAVGSGTANDSDDDKPLSLKINSTKTPSSSANKAIVLKTTPKIEQPGDDSED 190

Query: 443  TKPL----PLSVKLXXXXXXXXXXXXXXXPLLSRFQSKAIGGSSMKDSNVAEXXXXXXXX 610
             KPL    P +  L               PL +RF SK  G +S   S+  +        
Sbjct: 191  DKPLASRLPTNAALKRGGNVSDDSEDEK-PLAARF-SKVTGNASASISSSKDKVLSASIK 248

Query: 611  XXXXXXXXXXXXXXXXGGQKRPLSGANPXXXXXXXXXXXXXXXXXXXXXQEDFVKKESKT 790
                               KRP+   N                          VK+E K 
Sbjct: 249  ASSSSKMSNNDASTSRNSIKRPIDNNNQTSSALKKARPSDVSASAS-------VKREPKA 301

Query: 791  DDNDHLPIAQRMKKTVSSNSASISKNALHXXXXXXXXXXXXXXXXXXXXXXXXXXXXX-- 964
            DDND++P++QR+K   SS S   +KN +                                
Sbjct: 302  DDNDNVPLSQRLKMGESSKSKPPAKNIVKKSPSSLKKDNKKMKMKLKTKKTMKNSQFSKT 361

Query: 965  ---PPGSGGGQKWTTLEHNGVIFPPPYKPHGVKMLYKGQPVDLTPEQEEVATMFAVMKDT 1135
               PPGSGGGQKWTTL H+GVIFPPPYKPHGVK+LY GQPVDLTPEQEEVATMFAVMKDT
Sbjct: 362  MKVPPGSGGGQKWTTLVHSGVIFPPPYKPHGVKILYNGQPVDLTPEQEEVATMFAVMKDT 421

Query: 1136 DYASKKQFIENFMHDWRLMLGKNHIIKKFELCDFTPIYEWHLKEKEKKKQMTSXXXXXXX 1315
            DYASK+ FI+NF  DWR +LGKNH+IKKFELCDFTPIYEWHL+EKEKKKQMTS       
Sbjct: 422  DYASKQTFIDNFFTDWRKILGKNHVIKKFELCDFTPIYEWHLREKEKKKQMTSEEKKALK 481

Query: 1316 XXXXXXXXXYMWAIVDGVKEKVGNFRVEPPGLFRGRGEHPKMGKLKQRIRPKDITINIGK 1495
                     YMWAIVDGVKEKVGNFRVEPPGLFRGRGEHPKMGKLK+RI+P DITINIGK
Sbjct: 482  EEKLKQEEKYMWAIVDGVKEKVGNFRVEPPGLFRGRGEHPKMGKLKRRIKPSDITINIGK 541

Query: 1496 DAPIPECPIPGERWKEIKHDNTVTWLAFWNDPINPKEFKYVFLAASSSLKGQSDKEKYEK 1675
             APIPECPIPGE WKE+KHDNTVTWLAFWNDPI+ K+FKYVFLAASS+LKGQSDKEKYEK
Sbjct: 542  GAPIPECPIPGESWKEVKHDNTVTWLAFWNDPISQKDFKYVFLAASSALKGQSDKEKYEK 601

Query: 1676 ARLLKDYIQNIRANYTRDFNSKDPTKRQIAVATYLIDKLALRAGNEKDDDEADTVGCCTL 1855
            +R LK ++  IR  YT+DF SKD TK+QIAVATYLIDKLALRAGNEKD+DEA+TVGCCTL
Sbjct: 602  SRKLKHHVHKIRDTYTKDFRSKDKTKKQIAVATYLIDKLALRAGNEKDEDEAETVGCCTL 661

Query: 1856 KVENVELVPPNKLKFDFLGKDSIRYLNTVEVEPPVYKAIGDFQTAKRSNXXXXXXXXXXX 2035
            KV+NV  VPPNKL+FDFLGKDSIRY NTVEVE  VYKAI +F+  K+             
Sbjct: 662  KVDNVTCVPPNKLQFDFLGKDSIRYFNTVEVELLVYKAIEEFRAGKKPG-------QDLF 714

Query: 2036 XXXXTSKLNTHLKELMPGLTAKVFRTYNASITLDAILNKETKDGTAPEKIAVYQHANKEV 2215
                T++LN HLK+LMPGLTAKVFRTYNASITLD IL+KET+DGT  EKIAVYQ ANKEV
Sbjct: 715  DKLDTTRLNAHLKDLMPGLTAKVFRTYNASITLDDILHKETEDGTLLEKIAVYQRANKEV 774

Query: 2216 AIICNHQRSVSKSHENQMSKLNEKINDLKAQREELSTDLNRARKGKPPLKDKEGKTKKNL 2395
            AIICNHQRSVSKSH++QM++LNEKI++LKAQR+EL  DL++ RKGK    DK+GK K+NL
Sbjct: 775  AIICNHQRSVSKSHDSQMTRLNEKIDELKAQRDELKADLSKVRKGKNLGNDKDGKPKRNL 834

Query: 2396 APEAIGKKIAQIDAKIEKMEIDKQIKEDLKTVALGTSKINYLDPRISVAWCKRHEVPIEK 2575
            APEA  KKI+QI+ KIEKME+DK+IKEDLKTVALGTSKINYLDPRI+VAWCKRHEVPIEK
Sbjct: 835  APEAFEKKISQIETKIEKMEMDKKIKEDLKTVALGTSKINYLDPRITVAWCKRHEVPIEK 894

Query: 2576 IFNKSL 2593
            IFNKSL
Sbjct: 895  IFNKSL 900


>emb|CBI28783.3| unnamed protein product [Vitis vinifera]
          Length = 724

 Score =  892 bits (2305), Expect = 0.0
 Identities = 443/607 (72%), Positives = 486/607 (80%), Gaps = 1/607 (0%)
 Frame = +2

Query: 776  KESKTDDNDHLPIAQRMK-KTVSSNSASISKNALHXXXXXXXXXXXXXXXXXXXXXXXXX 952
            K    D  D +P++ + + KTVSS++   SK  +                          
Sbjct: 109  KNLSDDSEDEIPLSSKFRLKTVSSDNKKASKTKVIPSSRKKATKKAKKSKKLAKSSKYSK 168

Query: 953  XXXXPPGSGGGQKWTTLEHNGVIFPPPYKPHGVKMLYKGQPVDLTPEQEEVATMFAVMKD 1132
                PP SG GQKWTTLEHNGVIFPPPYKPHGVKMLY G+PVDLTPEQEEVATMFAVMKD
Sbjct: 169  STKVPPNSGEGQKWTTLEHNGVIFPPPYKPHGVKMLYNGRPVDLTPEQEEVATMFAVMKD 228

Query: 1133 TDYASKKQFIENFMHDWRLMLGKNHIIKKFELCDFTPIYEWHLKEKEKKKQMTSXXXXXX 1312
            TDYA+K +FIENFM+DWR+ LGKNH+IKKFELCDFTPIYEWH KEKEKKKQMT+      
Sbjct: 229  TDYATKPRFIENFMNDWRVRLGKNHVIKKFELCDFTPIYEWHEKEKEKKKQMTTEEKKAL 288

Query: 1313 XXXXXXXXXXYMWAIVDGVKEKVGNFRVEPPGLFRGRGEHPKMGKLKQRIRPKDITINIG 1492
                      YMWA+VDGVKEKVGNFRVEPPGLFRGRGEHPKMGKLK+RI P DITINIG
Sbjct: 289  KEEKLKQEDKYMWAVVDGVKEKVGNFRVEPPGLFRGRGEHPKMGKLKKRICPSDITINIG 348

Query: 1493 KDAPIPECPIPGERWKEIKHDNTVTWLAFWNDPINPKEFKYVFLAASSSLKGQSDKEKYE 1672
            K+AP+PECPIPGERWKE++HDNTVTWLAFWNDPINPKEFKYVFLAASSSLKGQSDKEKYE
Sbjct: 349  KEAPVPECPIPGERWKEVRHDNTVTWLAFWNDPINPKEFKYVFLAASSSLKGQSDKEKYE 408

Query: 1673 KARLLKDYIQNIRANYTRDFNSKDPTKRQIAVATYLIDKLALRAGNEKDDDEADTVGCCT 1852
            KARLLKDYIQNIRA YT+DF +KD  KRQIAVATYLIDKLALRAGNEKDDDEADTVGCCT
Sbjct: 409  KARLLKDYIQNIRATYTKDFTNKDTMKRQIAVATYLIDKLALRAGNEKDDDEADTVGCCT 468

Query: 1853 LKVENVELVPPNKLKFDFLGKDSIRYLNTVEVEPPVYKAIGDFQTAKRSNXXXXXXXXXX 2032
            LKVENV LVPPNKL+FDFLGKDSIRY NTVEVE PVYKAIG F+T K             
Sbjct: 469  LKVENVALVPPNKLEFDFLGKDSIRYFNTVEVELPVYKAIGQFKTGKSGG-------DDL 521

Query: 2033 XXXXXTSKLNTHLKELMPGLTAKVFRTYNASITLDAILNKETKDGTAPEKIAVYQHANKE 2212
                 TSKLN HLKELMPGLTAKVFRTYNASITLD +LN+E + G A EKI +YQHANKE
Sbjct: 522  FDKLDTSKLNAHLKELMPGLTAKVFRTYNASITLDEMLNREARGGDAMEKIVIYQHANKE 581

Query: 2213 VAIICNHQRSVSKSHENQMSKLNEKINDLKAQREELSTDLNRARKGKPPLKDKEGKTKKN 2392
            VAIICNHQRSVSKSH+ QMS+L+EK+ +L+   +EL TDL RA+KGKPPLKD +GK KKN
Sbjct: 582  VAIICNHQRSVSKSHDVQMSRLSEKMRELQGVLDELKTDLARAKKGKPPLKDSDGKPKKN 641

Query: 2393 LAPEAIGKKIAQIDAKIEKMEIDKQIKEDLKTVALGTSKINYLDPRISVAWCKRHEVPIE 2572
            + PE + +KIAQ + KIEKME D + KEDLKTVALGTSKINYLDPRISVAWCKR EVPIE
Sbjct: 642  MTPEVLERKIAQTNTKIEKMERDMKTKEDLKTVALGTSKINYLDPRISVAWCKRQEVPIE 701

Query: 2573 KIFNKSL 2593
            KIFNKSL
Sbjct: 702  KIFNKSL 708


>ref|XP_004972820.1| PREDICTED: DNA topoisomerase 1-like isoform X1 [Setaria italica]
          Length = 932

 Score =  891 bits (2303), Expect = 0.0
 Identities = 500/947 (52%), Positives = 588/947 (62%), Gaps = 84/947 (8%)
 Frame = +2

Query: 5    EDDDAPLVFRRANSSSK----------------------QRHLSSTSKK----------- 85
            +DDD P+ F+R+++S K                      Q+H++   +K           
Sbjct: 15   DDDDGPISFKRSSNSVKSSRPTPSKQEGSSGGAGVPVRSQKHVAPNQQKNGVSASVSRPM 74

Query: 86   -------TDTQKDAGSNLVSNQIAQNGESSHLQNVKLLSKASSEKPXXXXXTSVAVQRKR 244
                   +  Q+ +GS   ++  A + +S+     KL      E+        V +  ++
Sbjct: 75   HMKPPPSSPNQRPSGSGQPNSSAAHSSKSNSNDKSKLKRPLVKEENSDDSDDDVPIGLRK 134

Query: 245  SMEVEKICMHSKGDNFTSGSAGNMDLSKSNIKSENSDDDKPLSLKYSSSGIVNRSASLQA 424
             +E +K                   L + + K+++SDDDKPLSLK +SS           
Sbjct: 135  KVEEKK-------------------LKRVDEKADDSDDDKPLSLKINSS----------- 164

Query: 425  VKASQSTKPLPLSVKLXXXXXXXXXXXXXXXPLLSRFQSKAI---GGSSMKDSN-----V 580
             K S +    P+  K                PL SR  + A    GG++ +DS       
Sbjct: 165  -KMSSNCASRPVLQKAVAKVEQPDEDSDDDKPLASRLPTNAAPKSGGNASEDSEDEKPLA 223

Query: 581  AEXXXXXXXXXXXXXXXXXXXXXXXXGGQ---KRPLSGANPXXXXXXXXXXXXXXXXXXX 751
            A                         G +   KRPL  +N                    
Sbjct: 224  ARFSKVSGSGNLKLTSSSKGLNNDSNGPRNLGKRPLDNSNQTSLALKKAKPSNVSASAS- 282

Query: 752  XXQEDFVKKESKTDDNDHLPIAQRMKKTVSSNSASISKNALHXXXXXXXXXXXXXXXXXX 931
                  VK+E K DDND+ P+AQR+K   SS     +KN +                   
Sbjct: 283  ------VKREIKADDNDNTPLAQRLKIGESSKGKPSAKNVVKKSPASMKKGIKKMKGKVK 336

Query: 932  XXXXXXXXXXX----PPGSGGGQKWTTLEHNGVIFPPPYKPHGVKMLYKGQPVDLTPEQE 1099
                           PPGSGGG+KWTTLEHNGVIFPPPYKPHGVKMLY GQPVDLTPEQE
Sbjct: 337  TKMMKNSQFSKTMKVPPGSGGGKKWTTLEHNGVIFPPPYKPHGVKMLYNGQPVDLTPEQE 396

Query: 1100 EVATMFAVMKDTDYASKKQFIENFMHDWRLMLGKNHIIKKFELCDFTPIYEWHLKEKEKK 1279
            EVATMFAVMKDTDYA K  FIENF  DWR +LGKNH+IKKFELCDFTPIYEWHL+EKEKK
Sbjct: 397  EVATMFAVMKDTDYAGKPTFIENFFTDWRTLLGKNHVIKKFELCDFTPIYEWHLREKEKK 456

Query: 1280 KQMTSXXXXXXXXXXXXXXXXYMWAIVDGVKEKVGNFRVEPPGLFRGRGEHPKMGKLKQR 1459
            KQMT+                YMWA+VDGVKEKVGNFRVEPPGLFRGRGEHPKMGKLK+R
Sbjct: 457  KQMTTEEKKALREEKLKQEEKYMWAVVDGVKEKVGNFRVEPPGLFRGRGEHPKMGKLKRR 516

Query: 1460 IRPKDITINIGKDAPIPECPIPGERWKEIKHDNTVTWLAFWNDPINPKEFKYVFLAASSS 1639
            I+P DITINIG+DAP+PECPIPGERWKE+KHDNTVTWLAFWNDPI+ K+FKYVFLAASSS
Sbjct: 517  IKPSDITINIGEDAPVPECPIPGERWKEVKHDNTVTWLAFWNDPISQKDFKYVFLAASSS 576

Query: 1640 LKGQSDKEKYEKARLLKDYIQNIRANYTRDFNSKDPTKRQIAVATYLIDKLALRAGNEKD 1819
            LKGQSDKEKYEK+R LK YIQ+IR NYT+DF SKD  KRQIAVATYLIDKLALRAGNEKD
Sbjct: 577  LKGQSDKEKYEKSRKLKGYIQDIRDNYTKDFRSKDVAKRQIAVATYLIDKLALRAGNEKD 636

Query: 1820 DDEADTVGCCTLKVENVELVPPNKLKFDFLGKDSIRYLNTVEVEPPVYKAIGDFQTAKRS 1999
            +DEADTVGCCTLKV+NV  +PPNK++FDFLGKDSIRY NTVEVE  VYKAI  F+  K+ 
Sbjct: 637  EDEADTVGCCTLKVDNVTCLPPNKIQFDFLGKDSIRYFNTVEVEELVYKAIEGFRAGKKP 696

Query: 2000 NXXXXXXXXXXXXXXXTSKLNTHLKELMPGLTAKVFRTYNASITLDAILNKETKDGTAPE 2179
                            T++LN HLK+LMPGLTAKVFRTYNASITLD IL+KET+DGT  E
Sbjct: 697  GKDLFDQLD-------TTRLNAHLKDLMPGLTAKVFRTYNASITLDGILHKETEDGTLLE 749

Query: 2180 KIAVYQHANKEVAIICNHQRSVSKSHENQMSKLNEKINDLK------------------- 2302
            KIAVYQ ANKEVAIICNHQRSVSKSHE+QM++LNE+I+DLK                   
Sbjct: 750  KIAVYQRANKEVAIICNHQRSVSKSHESQMTRLNERIDDLKVGFLPQVINSCFYHGFFLE 809

Query: 2303 ----------AQREELSTDLNRARKGKPPLKDKEGKTKKNLAPEAIGKKIAQIDAKIEKM 2452
                      AQR+EL  DL++A+KGKP   DKEGK K+NLAP+AI KKIA I+ KIEKM
Sbjct: 810  VFSIIFFLLQAQRDELKVDLSKAKKGKPLGYDKEGKQKRNLAPDAIEKKIAAIETKIEKM 869

Query: 2453 EIDKQIKEDLKTVALGTSKINYLDPRISVAWCKRHEVPIEKIFNKSL 2593
            E++K+ KEDLKTVALGTSKINYLDPRI+VAWCKRHEVPIEKIFNKSL
Sbjct: 870  EMEKKTKEDLKTVALGTSKINYLDPRITVAWCKRHEVPIEKIFNKSL 916


>ref|XP_002317355.1| DNA topoisomerase family protein [Populus trichocarpa]
            gi|222860420|gb|EEE97967.1| DNA topoisomerase family
            protein [Populus trichocarpa]
          Length = 860

 Score =  889 bits (2297), Expect = 0.0
 Identities = 490/872 (56%), Positives = 571/872 (65%), Gaps = 8/872 (0%)
 Frame = +2

Query: 2    EEDDDAPLVFRRA-NSSSKQRHLSSTSKK--TDTQKDAGSNLVSNQIAQNGESSHLQNVK 172
            ++DDD P+VF+R  NS+SKQ   +  +KK  + +Q   G +L +++      SS+   VK
Sbjct: 17   DDDDDGPIVFKRGGNSTSKQNQPNLEAKKPSSSSQNSNGQSLNAHKGKSPISSSNASPVK 76

Query: 173  LLSKASSEKPXXXXXTSVAVQRKRSMEVEKICMHSKGDNFTSGSAGNMDLSKSNIKSENS 352
                +    P     ++ A   K  +   ++          S S    + +K  +  ++S
Sbjct: 77   ----SPIGSPKASASSAKASPMKPPVTYSRV---------PSSSIAVKEETKPIVDDDDS 123

Query: 353  DDDKPLSLKYS-SSGIVNRSASLQA-VKASQSTKPLPLSVKLXXXXXXXXXXXXXXXPLL 526
            +DDKPLS ++  S+   N+  ++ A VK   S                         PL 
Sbjct: 124  EDDKPLSSRFKGSTNNANKGVTVPARVKDEHSDDD--------------------EVPLS 163

Query: 527  SRFQSKA-IGGSSMKDSNVAEXXXXXXXXXXXXXXXXXXXXXXXXGGQKRPLSGANPXXX 703
            SRF +K+  G SS K  + +E                           KRP+    P   
Sbjct: 164  SRFAAKSNAGSSSCKTISSSEKILLVSKIQLNGSTAKDKQQKSSAVPTKRPMDNKVPSNQ 223

Query: 704  XXXXXXXXXXXXXXXXXXQEDFVKKESKTDDNDHLPIAQRMKKTVSSNSASIS--KNALH 877
                              ++  VK E K DD+DHL I+QRMKK  SS++ S+S  +N   
Sbjct: 224  SFAKKPKLSDASTT----KQVTVKAELKADDDDHLTISQRMKKASSSSNKSLSVKQNVTK 279

Query: 878  XXXXXXXXXXXXXXXXXXXXXXXXXXXXXPPGSGGGQKWTTLEHNGVIFPPPYKPHGVKM 1057
                                         P  S G +KW TL HNGVIFPPPYKPHGVKM
Sbjct: 280  VVSFSSKKTTKNNKKQMQNSKYSKSTKVQPGSSDGQKKWKTLVHNGVIFPPPYKPHGVKM 339

Query: 1058 LYKGQPVDLTPEQEEVATMFAVMKDTDYASKKQFIENFMHDWRLMLGKNHIIKKFELCDF 1237
            LYKG+PVDLTPEQEEVATMFAVMKDT+Y  K QF++NF +DWR +LGKNH+I+K E CDF
Sbjct: 340  LYKGKPVDLTPEQEEVATMFAVMKDTEYVQKPQFLQNFWNDWRTLLGKNHVIQKLEACDF 399

Query: 1238 TPIYEWHLKEKEKKKQMTSXXXXXXXXXXXXXXXXYMWAIVDGVKEKVGNFRVEPPGLFR 1417
             PIYEWH KEKEKKKQM++                YMWAIV+GVKEKVGNFRVEPPGLFR
Sbjct: 400  NPIYEWHQKEKEKKKQMSTEEKKAVREEKLKQEEMYMWAIVNGVKEKVGNFRVEPPGLFR 459

Query: 1418 GRGEHPKMGKLKQRIRPKDITINIGKDAPIPECPIPGERWKEIKHDNTVTWLAFWNDPIN 1597
            GRGEHPKMGKLK RIRP DITINIGKDAPIP+CPIPGERWKE+KHDNTVTWLAFWNDPIN
Sbjct: 460  GRGEHPKMGKLKSRIRPSDITINIGKDAPIPKCPIPGERWKEVKHDNTVTWLAFWNDPIN 519

Query: 1598 PKEFKYVFLAASSSLKGQSDKEKYEKARLLKDYIQNIRANYTRDFNSKDPTKRQIAVATY 1777
            PKEFKYVFLAASSSLKGQSDKEKYEKAR LKDYI NIR  YT+DF SKD TKRQIAVATY
Sbjct: 520  PKEFKYVFLAASSSLKGQSDKEKYEKARKLKDYIHNIRTAYTKDFASKDITKRQIAVATY 579

Query: 1778 LIDKLALRAGNEKDDDEADTVGCCTLKVENVELVPPNKLKFDFLGKDSIRYLNTVEVEPP 1957
            LIDKLALRAGNEKDDDEADTVGCCTLKV NVE +PPNKLKFDFLGKDSIRY NTVEVE P
Sbjct: 580  LIDKLALRAGNEKDDDEADTVGCCTLKVANVECIPPNKLKFDFLGKDSIRYENTVEVELP 639

Query: 1958 VYKAIGDFQTAKRSNXXXXXXXXXXXXXXXTSKLNTHLKELMPGLTAKVFRTYNASITLD 2137
            VYKAI  FQ AK+                 TSKLN HLKELMPGLTAKVFRTYNASITLD
Sbjct: 640  VYKAIRQFQVAKKPT-------DDLFDSLDTSKLNAHLKELMPGLTAKVFRTYNASITLD 692

Query: 2138 AILNKETKDGTAPEKIAVYQHANKEVAIICNHQRSVSKSHENQMSKLNEKINDLKAQREE 2317
              L +ET+DG   EK  +Y  ANK+VAIICNHQR++SKSH+ QMS+L EK+ +LK   +E
Sbjct: 693  EKLYEETEDGDVAEKFVIYNQANKQVAIICNHQRTISKSHDAQMSRLTEKLEELKGTLKE 752

Query: 2318 LSTDLNRARKGKPPLKDKEGKTKKNLAPEAIGKKIAQIDAKIEKMEIDKQIKEDLKTVAL 2497
              TDL+RA+KGKPPLKD +GK K+NL PEAI KKIA  + KIEKME+  + KEDLKTVAL
Sbjct: 753  FKTDLDRAKKGKPPLKDADGKQKRNLTPEAIEKKIATTNQKIEKMELSMKTKEDLKTVAL 812

Query: 2498 GTSKINYLDPRISVAWCKRHEVPIEKIFNKSL 2593
            GTSKINYLDPRI+VAWCKRHEVPIEKIFNKSL
Sbjct: 813  GTSKINYLDPRITVAWCKRHEVPIEKIFNKSL 844


>dbj|BAG31377.1| topoisomerase I [Catharanthus roseus]
          Length = 910

 Score =  887 bits (2293), Expect = 0.0
 Identities = 505/911 (55%), Positives = 580/911 (63%), Gaps = 48/911 (5%)
 Frame = +2

Query: 5    EDDDAPLVFRRANSSSKQRHLSSTSKKTDTQKDAGSNL--VSNQIAQNGESSHLQNVKLL 178
            ++DD P+VF+R NS+SKQ   +S ++K  +QK  G ++  + +    NGESS  Q  +++
Sbjct: 16   DEDDEPIVFKRNNSASKQSQTNSETRKVSSQKRDGQSVRQIYDSRPANGESSSGQKGRMV 75

Query: 179  --SKASSEKPXXXXXTSVAVQRKRSMEVEKICMHSKGDN-----------FTSGSAG--- 310
              SK S  K       S   Q K  +   K+   S   +            TSGS     
Sbjct: 76   PPSKPSQVKSPLSSPPSKPSQVKSPLSSPKVSTSSAKKSPVSSLPANSKPSTSGSFKVKP 135

Query: 311  -NMDLSKSNIK----------------SENSDDDKPLSLKYSSSGI------VNRSASLQ 421
             N   S + IK                SE+SDD KPLSL++S+S        V++  S  
Sbjct: 136  FNQHKSATVIKEEKSSPLRLASAIINDSEDSDDGKPLSLRHSASSSKGNTNQVSKEGSKP 195

Query: 422  AVKASQSTKPLPLSVKLXXXXXXXXXXXXXXX---PLLSRFQSKAIGGSSMKDSNVAEXX 592
              + S   KPL     L                  PL  + Q     GS+M+D    +  
Sbjct: 196  ENEDSDDEKPLSSRFPLKSGVGESTSKAYDSDDDKPLAKKLQHN---GSAMRDGQPNKYS 252

Query: 593  XXXXXXXXXXXXXXXXXXXXXXGGQKRPLSGANPXXXXXXXXXXXXXXXXXXXXXQEDFV 772
                                     KRP                           Q   V
Sbjct: 253  NM---------------------SNKRPPGDIKSSNQLSVKKPKLSSVTAPTNKKQAS-V 290

Query: 773  KKESKT--DDNDHLPIAQRMKKTVSSNSASISKNALHXXXXXXXXXXXXXXXXXXXXXXX 946
            K E K   DD+DHLPI+QR+KK+ +S S S S                            
Sbjct: 291  KPEPKAEDDDDDHLPISQRIKKSPTSESKSSSIKKTTKVVSSSVKKVNKKSKKVMKNSKY 350

Query: 947  XXXXXXPPGSGGGQKWTTLEHNGVIFPPPYKPHGVKMLYKGQPVDLTPEQEEVATMFAVM 1126
                  PP SG G+KW  LEHNGVIFPPPYKPHG+KMLYKG+PVDLTPEQEEVATMFAVM
Sbjct: 351  SKSSKVPPSSGEGKKWNKLEHNGVIFPPPYKPHGIKMLYKGKPVDLTPEQEEVATMFAVM 410

Query: 1127 KDTDYASKKQFIENFMHDWRLMLGKNHIIKKFELCDFTPIYEWHLKEKEKKKQMTSXXXX 1306
             DTDY +K +F ENF  DW+ +LGKNH+I+  E CDF+PIYEWH  EKEKKKQMT+    
Sbjct: 411  LDTDYMNKPRFKENFFGDWKKILGKNHVIQNLENCDFSPIYEWHQSEKEKKKQMTTEEKK 470

Query: 1307 XXXXXXXXXXXXYMWAIVDGVKEKVGNFRVEPPGLFRGRGEHPKMGKLKQRIRPKDITIN 1486
                        YMWA VDG KEKVGNFRVEPPGLFRGRGEHPKMGKLK+RIRP DITIN
Sbjct: 471  ALKEEKLKQEEKYMWAWVDGKKEKVGNFRVEPPGLFRGRGEHPKMGKLKKRIRPCDITIN 530

Query: 1487 IGKDAPIPECPIPGERWKEIKHDNTVTWLAFWNDPINPKEFKYVFLAASSSLKGQSDKEK 1666
            IGKDAPIPECP+PGERWKE++HDNTVTWLAFWNDPINPKEFKYVFLAASS+LKG SDKEK
Sbjct: 531  IGKDAPIPECPVPGERWKEVRHDNTVTWLAFWNDPINPKEFKYVFLAASSTLKGLSDKEK 590

Query: 1667 YEKARLLKDYIQNIRANYTRDFNSKDPTKRQIAVATYLIDKLALRAGNEKDDDEADTVGC 1846
            YEKARLLKDYIQ IRA YT+DF SKDPTK+QIAVATYLIDKLALRAGNEKDDDEADTVGC
Sbjct: 591  YEKARLLKDYIQGIRAAYTKDFASKDPTKKQIAVATYLIDKLALRAGNEKDDDEADTVGC 650

Query: 1847 CTLKVENVELVPPNKLKFDFLGKDSIRYLNTVEVEPPVYKAIGDFQTAKRSNXXXXXXXX 2026
            CTLKVENVE VPPN LKFDFLGKDSIRY N VEVE  V+KAI  F++ K  +        
Sbjct: 651  CTLKVENVEPVPPNILKFDFLGKDSIRYQNEVEVEAAVFKAIQQFRSGKEGS-------S 703

Query: 2027 XXXXXXXTSKLNTHLKELMPGLTAKVFRTYNASITLDAILNKETKDGTAPEKIAVYQHAN 2206
                   TSKLN HLKELMPGLTAKVFRTYNASITLD +L++ETK G   EK+ VYQHAN
Sbjct: 704  DLFDLLDTSKLNAHLKELMPGLTAKVFRTYNASITLDDMLSRETKGGDVAEKVVVYQHAN 763

Query: 2207 KEVAIICNHQRSVSKSHENQMSKLNEKINDLKAQREELSTDLNRARKGKPPLKDK--EGK 2380
            KEVAIICNHQR+VSKSH  QM +LNEKI +LKA  EEL +DL+R +KGKPPLK K  +GK
Sbjct: 764  KEVAIICNHQRTVSKSHSAQMLRLNEKIEELKAVVEELKSDLSRVKKGKPPLKSKNADGK 823

Query: 2381 TKKNLAPEAIGKKIAQIDAKIEKMEIDKQIKEDLKTVALGTSKINYLDPRISVAWCKRHE 2560
             K+NL PE++ KKIAQ +AKIEKME DK+ KEDLKTVALGTSKINYLDPRI+VAWCKRHE
Sbjct: 824  PKRNLNPESLEKKIAQTNAKIEKMERDKETKEDLKTVALGTSKINYLDPRITVAWCKRHE 883

Query: 2561 VPIEKIFNKSL 2593
            VPIEKIFNKSL
Sbjct: 884  VPIEKIFNKSL 894


>dbj|BAG31376.1| topoisomerase I [Camptotheca acuminata]
          Length = 894

 Score =  885 bits (2287), Expect = 0.0
 Identities = 488/875 (55%), Positives = 573/875 (65%), Gaps = 12/875 (1%)
 Frame = +2

Query: 5    EDDDAPLVFRRANSSSKQRHLSSTSKKTDTQKDAGSNL-VSNQIAQNGESSHLQNVKLLS 181
            ++DD PLVF+R+N++SK   L+S +KK+  + D  S   VS+  + NG+SS     K   
Sbjct: 16   DEDDEPLVFKRSNATSKHNQLNSDTKKSSQRYDGQSGRQVSDVPSTNGQSSSASKGKTTK 75

Query: 182  KASSEKPXXXXXTSVAVQRKRSMEVEKICMHSKGDNFTSGSAGNMDLSKSNIKSEN---- 349
             +S + P      S +  +   +   K+   S   +  S     +++ K   +  N    
Sbjct: 76   LSSMKSPIASPKASTSFAKASPVANPKVSSSSDDRSKHSSKQNTINVVKEEKELVNPAAE 135

Query: 350  ----SDDDKPLSLKYSSSGIVNRSASLQAVKASQSTKPLPLSVKLXXXXXXXXXXXXXXX 517
                S+D+KPLS +  +   + + +S  A K   ++ P  L V                 
Sbjct: 136  PYGDSEDEKPLSARLFTG--LTKGSSNNANKGLINSSPASLPVP-KPEINRYSDDSDDEI 192

Query: 518  PLLSRFQSKAIGGSSMKDSNVAEXXXXXXXXXXXXXXXXXXXXXXXXGGQKRPLSGANPX 697
            PL S+F+ KA  G+S   S  ++                           KRPL      
Sbjct: 193  PLSSKFRLKANAGTSTVKSYESDDNKTLVSNFQQNGSINRGSKSSIKVN-KRPLGEVKSS 251

Query: 698  XXXXXXXXXXXXXXXXXXXXQEDFVKKESKTDDND--HLPIAQRMKKTVSS-NSASISKN 868
                                Q    K E K DD+D  H+PI+QRMKK+ +S N +S +K 
Sbjct: 252  VQSSVKKPKLSDASTPVNNKQAS-KKAEPKADDSDDDHVPISQRMKKSATSGNKSSTAKQ 310

Query: 869  ALHXXXXXXXXXXXXXXXXXXXXXXXXXXXXXPPGSGGGQKWTTLEHNGVIFPPPYKPHG 1048
             +                              PP SG G+KW TL HNGVIFPPPYKPHG
Sbjct: 311  KVTKVVSSSMKKASKKFKKVVKKSKYSKSSKVPPSSGEGKKWNTLVHNGVIFPPPYKPHG 370

Query: 1049 VKMLYKGQPVDLTPEQEEVATMFAVMKDTDYASKKQFIENFMHDWRLMLGKNHIIKKFEL 1228
            VKMLYKG+PVDLTPEQEEVATMFAVM DTDY +K +F ENFM DWR +LGKNH+I+  E 
Sbjct: 371  VKMLYKGKPVDLTPEQEEVATMFAVMLDTDYMTKSKFKENFMDDWRKILGKNHVIQNLED 430

Query: 1229 CDFTPIYEWHLKEKEKKKQMTSXXXXXXXXXXXXXXXXYMWAIVDGVKEKVGNFRVEPPG 1408
            CDFTPIYEWH +EKEKKK+MT+                YMWAIV+GVKEKVGNFRVEPP 
Sbjct: 431  CDFTPIYEWHQREKEKKKKMTAEEKKVLKEERLKQEEKYMWAIVNGVKEKVGNFRVEPPS 490

Query: 1409 LFRGRGEHPKMGKLKQRIRPKDITINIGKDAPIPECPIPGERWKEIKHDNTVTWLAFWND 1588
            LFRGRGEHPKMGKLK+ IRP DITINIGKDAPIPECPIPGE WKEI+HDNTVTWLAFWND
Sbjct: 491  LFRGRGEHPKMGKLKKCIRPSDITINIGKDAPIPECPIPGESWKEIRHDNTVTWLAFWND 550

Query: 1589 PINPKEFKYVFLAASSSLKGQSDKEKYEKARLLKDYIQNIRANYTRDFNSKDPTKRQIAV 1768
            PI P+EFKYVFLAASSSLKGQSDKEKYEKARLLKD+IQ IRA YT+DF SKD TKRQIAV
Sbjct: 551  PIKPREFKYVFLAASSSLKGQSDKEKYEKARLLKDFIQGIRAAYTKDFASKDITKRQIAV 610

Query: 1769 ATYLIDKLALRAGNEKDDDEADTVGCCTLKVENVELVPPNKLKFDFLGKDSIRYLNTVEV 1948
            ATYLIDKLALRAGNEKDDDEADTVGCCTLKVENVE  PP+ LKFDFLGKDSIRY N VEV
Sbjct: 611  ATYLIDKLALRAGNEKDDDEADTVGCCTLKVENVEPKPPSILKFDFLGKDSIRYQNEVEV 670

Query: 1949 EPPVYKAIGDFQTAKRSNXXXXXXXXXXXXXXXTSKLNTHLKELMPGLTAKVFRTYNASI 2128
            E PVYKAI  F+T KR                 TSKLN HLK LMPGLTAKVFRTYNASI
Sbjct: 671  ELPVYKAIQQFRTGKRGG-------DDLFDKLDTSKLNAHLKGLMPGLTAKVFRTYNASI 723

Query: 2129 TLDAILNKETKDGTAPEKIAVYQHANKEVAIICNHQRSVSKSHENQMSKLNEKINDLKAQ 2308
            TLD +L++ETK G   EKI VYQHANKEVAIICNHQR+VSKSH  QM++LN KI++LK  
Sbjct: 724  TLDEMLSRETKGGNVAEKIVVYQHANKEVAIICNHQRTVSKSHPAQMTRLNGKIDELKGI 783

Query: 2309 REELSTDLNRARKGKPPLKDKEGKTKKNLAPEAIGKKIAQIDAKIEKMEIDKQIKEDLKT 2488
             + L TDL RA+KGKPPL+D +GK K+NL PEA+ +KI Q +AKIEKME DK+ KE LKT
Sbjct: 784  LDGLQTDLARAKKGKPPLEDADGKPKRNLTPEALERKIGQTNAKIEKMERDKETKEGLKT 843

Query: 2489 VALGTSKINYLDPRISVAWCKRHEVPIEKIFNKSL 2593
            +ALGTSKI+YLDPRI+VAWCKRHEVPIEK+FNKSL
Sbjct: 844  IALGTSKISYLDPRITVAWCKRHEVPIEKVFNKSL 878


>ref|NP_001157806.1| topoisomerase I [Zea mays] gi|240065169|gb|ACS44671.1| DNA
            topoisomerase I [Zea mays]
          Length = 904

 Score =  880 bits (2275), Expect = 0.0
 Identities = 492/905 (54%), Positives = 584/905 (64%), Gaps = 41/905 (4%)
 Frame = +2

Query: 2    EEDDDAPLVFRRANSSSKQRHLSSTSKKTDTQKDAGSNL-----VSNQIAQNGES--SHL 160
            ++DDD P+ F+R ++S+K     + SK   +    G+ +     VS    +NG +  S  
Sbjct: 13   DDDDDTPISFKRTSNSTKTAR-PTPSKHAGSSGGNGAPVRIPKPVSPNPQKNGATGASRP 71

Query: 161  QNVKLLSKASSEKPXXXXXTSVAVQ---RKRSMEVEKICMHSKGDNFTSGSAGNMDLS-- 325
             ++K  S + + +P      +   Q   +  S+++ K+      D  +  S   + +   
Sbjct: 72   LHMKPPSSSPNHRPSGSGQPNSLAQHSSKANSIDMSKLKRPLVKDERSDDSDDEVPIGLR 131

Query: 326  ----KSNIKS---------ENSDDDKPLSLKYSSSGIVNRSASLQAVKASQSTKPLPLSV 466
                +  +K          ++ DDDKPL LK +SS            + S +    P+  
Sbjct: 132  RKVEEKKLKGVDTRVQKTDDSDDDDKPLGLKINSS------------RMSSNRVNKPVLQ 179

Query: 467  KLXXXXXXXXXXXXXXXPLLSRFQSKA---IGGSSMKDSN----VAEXXXXXXXXXXXXX 625
            +                PL SR  S A    GG   +DS     +A              
Sbjct: 180  RTVPKVEQPDEDSDDDKPLASRLPSNAGPKSGGDVSEDSEDEKPLAARFSKVAGSGNPKI 239

Query: 626  XXXXXXXXXXXGGQ----KRPLSGANPXXXXXXXXXXXXXXXXXXXXXQEDFVKKESKTD 793
                        GQ    KRPL  +N                          V++E KTD
Sbjct: 240  ASSSKGLTSDTNGQQSLGKRPLDSSNQTSSALKKAKPSNVSASA-------IVRREIKTD 292

Query: 794  DNDHLPIAQRMKKTVSSNSASISKNA-----LHXXXXXXXXXXXXXXXXXXXXXXXXXXX 958
            DN   P+AQR+K   SS   S +K+      +                            
Sbjct: 293  DNT--PLAQRLKMGESSKGKSSAKSVFKKSPVSVKKDIKKMKGKGKLKKNMKNSQFSKIM 350

Query: 959  XXPPGSGGGQKWTTLEHNGVIFPPPYKPHGVKMLYKGQPVDLTPEQEEVATMFAVMKDTD 1138
              PPGSGGG+KWTTLEHNGVIFPPPYKPHGVKMLY G+PVDLTPEQEEVATMFAVMKDTD
Sbjct: 351  KVPPGSGGGKKWTTLEHNGVIFPPPYKPHGVKMLYNGKPVDLTPEQEEVATMFAVMKDTD 410

Query: 1139 YASKKQFIENFMHDWRLMLGKNHIIKKFELCDFTPIYEWHLKEKEKKKQMTSXXXXXXXX 1318
            YA+K  FI+NF  DWR +LGKNHIIK FELCDFTPIYEWHL+EKE+KKQMT+        
Sbjct: 411  YAAKPTFIDNFFTDWRKVLGKNHIIKNFELCDFTPIYEWHLREKERKKQMTTEEKKTLRE 470

Query: 1319 XXXXXXXXYMWAIVDGVKEKVGNFRVEPPGLFRGRGEHPKMGKLKQRIRPKDITINIGKD 1498
                    YMWA+VDGVKEKVGNFRVEPPGLFRGRGEHPKMGKLK+RI P DITINIGK 
Sbjct: 471  DNLKQEEKYMWAVVDGVKEKVGNFRVEPPGLFRGRGEHPKMGKLKRRILPSDITINIGKG 530

Query: 1499 APIPECPIPGERWKEIKHDNTVTWLAFWNDPINPKEFKYVFLAASSSLKGQSDKEKYEKA 1678
            AP+PECPIPGE WKE+KHDNTVTWLAFWNDPINPK+FKYVFLAASSSLKGQSDKEKYEK+
Sbjct: 531  APVPECPIPGESWKEVKHDNTVTWLAFWNDPINPKDFKYVFLAASSSLKGQSDKEKYEKS 590

Query: 1679 RLLKDYIQNIRANYTRDFNSKDPTKRQIAVATYLIDKLALRAGNEKDDDEADTVGCCTLK 1858
            R LK +IQ IR NYT+DF +KD T+RQIAVATYLIDKLALRAGNEKDDDEADTVGCCTLK
Sbjct: 591  RKLKGHIQRIRENYTKDFKNKDVTRRQIAVATYLIDKLALRAGNEKDDDEADTVGCCTLK 650

Query: 1859 VENVELVPPNKLKFDFLGKDSIRYLNTVEVEPPVYKAIGDFQTAKRSNXXXXXXXXXXXX 2038
            V+NV  +PPN+++FDFLGKDSIRY NTVEVE  VYKAI  F+  K+              
Sbjct: 651  VDNVTCMPPNQIQFDFLGKDSIRYFNTVEVEELVYKAIEGFRAGKKPG-------QDLFD 703

Query: 2039 XXXTSKLNTHLKELMPGLTAKVFRTYNASITLDAILNKETKDGTAPEKIAVYQHANKEVA 2218
               TS+LN HLK+LMPGLTAKVFRTYNASITLD IL++ET+DGT  EKIAVYQ ANKEVA
Sbjct: 704  KIDTSRLNAHLKDLMPGLTAKVFRTYNASITLDGILHEETEDGTVLEKIAVYQRANKEVA 763

Query: 2219 IICNHQRSVSKSHENQMSKLNEKINDLKAQREELSTDLNRARKGKPPLKDKEGKTKKNLA 2398
            IICN QRSVSKSHE+QM+++NEKI++LK+Q EEL  DLN+A+KGKP   D EGK K+NLA
Sbjct: 764  IICNQQRSVSKSHESQMTRMNEKIDELKSQMEELKADLNKAKKGKPLGYDSEGKPKRNLA 823

Query: 2399 PEAIGKKIAQIDAKIEKMEIDKQIKEDLKTVALGTSKINYLDPRISVAWCKRHEVPIEKI 2578
            PEAI KK+A ++ KIEKME+DK+IKEDLKTVALGTSKINYLDPRI+VAWCKRHEVPIEKI
Sbjct: 824  PEAIQKKVATLEGKIEKMEMDKRIKEDLKTVALGTSKINYLDPRITVAWCKRHEVPIEKI 883

Query: 2579 FNKSL 2593
            FNKSL
Sbjct: 884  FNKSL 888


>dbj|BAG31375.1| topoisomerase I [Ophiorrhiza japonica]
          Length = 927

 Score =  876 bits (2263), Expect = 0.0
 Identities = 497/918 (54%), Positives = 578/918 (62%), Gaps = 55/918 (5%)
 Frame = +2

Query: 5    EDDDAPLVFRRANSSSKQRHLSSTSKKTDTQKDAGSNLV--SNQIAQNGESSHLQNVKL- 175
            EDD+ P++F+R+N +SKQ   +S  KK   QK  G + V  S+    NGESS  Q  ++ 
Sbjct: 15   EDDEGPVIFKRSNPASKQNQANSEKKKLSLQKHVGQSAVHTSDVRPANGESSSAQKGRIQ 74

Query: 176  -------------LSKASSEKPXXXXXTSVAVQRKRSMEVEKICMHSKGDNFTSGSAG-- 310
                           KAS+        TS     K S         +K  N    SA   
Sbjct: 75   PSAKTPPVKSPLSSPKASNSSAKASPITSPGANSKPSASATST---AKQQNHHKSSAAFI 131

Query: 311  ----NMDLSKSNIKSENSDDDKPLSLK---YSSSGIVNRSASLQAVKASQSTKPLPLSVK 469
                ++  +K+N  SE+SDD+KPLS +    SS G           K++ + K    S  
Sbjct: 132  EPKPSVPAAKANSNSESSDDEKPLSARTFGCSSKG-----------KSNHANKEGGDSCS 180

Query: 470  LXXXXXXXXXXXXXXXPLLSRFQSK-AIGGSSMKDSNVAEXXXXXXXXXXXXXXXXXXXX 646
            +               PL  RF SK ++G S+ K  +  E                    
Sbjct: 181  IRRRVIEESEDSEDEKPLSRRFTSKSSLGESTSKSYDSDEKKPLAAKVQQNGSVSRDGPM 240

Query: 647  XXXXGGQKRPLSGANPXXXXXXXXXXXXXXXXXXXXXQEDFVKKESK---TDDNDHLPIA 817
                    +   G                        ++  VK E +    DD+D++P++
Sbjct: 241  NKSASLSNKRPPGEVKSLNQSSVKKPKLSSPITSISNKQAAVKPEPEPKAEDDDDNIPLS 300

Query: 818  QRMKKTVSSNS--------------------ASISKNA-----LHXXXXXXXXXXXXXXX 922
            QR KK+ ++ S                    AS+SK++                      
Sbjct: 301  QRGKKSQAATSKPKDEDDDNVPIAQRIKKSPASVSKSSAPVKKASTVVSPSLKKVNKNSK 360

Query: 923  XXXXXXXXXXXXXXPPGSGGGQKWTTLEHNGVIFPPPYKPHGVKMLYKGQPVDLTPEQEE 1102
                          PPGSG GQKWTTL HNGVIFPPPY PHGVKMLYK QP+ LTPEQEE
Sbjct: 361  KVIKKTAYTKSSKVPPGSGEGQKWTTLVHNGVIFPPPYNPHGVKMLYKRQPITLTPEQEE 420

Query: 1103 VATMFAVMKDTDYASKKQFIENFMHDWRLMLGKNHIIKKFELCDFTPIYEWHLKEKEKKK 1282
            VATMFAVM DTDY +K +F ENF  DW+ MLGKNH I+  E CDF PIYEWH +EKEKKK
Sbjct: 421  VATMFAVMLDTDYMNKPRFKENFFSDWKKMLGKNHTIQNLEDCDFGPIYEWHQQEKEKKK 480

Query: 1283 QMTSXXXXXXXXXXXXXXXXYMWAIVDGVKEKVGNFRVEPPGLFRGRGEHPKMGKLKQRI 1462
            QMT+                YMWAIVDGVKEKVGNFRVEPPGLFRGRGEHPKMGKLK+RI
Sbjct: 481  QMTTEEKKALKEDKLQQEEKYMWAIVDGVKEKVGNFRVEPPGLFRGRGEHPKMGKLKKRI 540

Query: 1463 RPKDITINIGKDAPIPECPIPGERWKEIKHDNTVTWLAFWNDPINPKEFKYVFLAASSSL 1642
            RP+DITINIGKDAPIPECPIPGERWKE+++DNTVTWLAFW DPIN KEFKYVFLAASS+L
Sbjct: 541  RPRDITINIGKDAPIPECPIPGERWKEVRNDNTVTWLAFWIDPINQKEFKYVFLAASSTL 600

Query: 1643 KGQSDKEKYEKARLLKDYIQNIRANYTRDF-NSKDPTKRQIAVATYLIDKLALRAGNEKD 1819
            KGQSDKEKYEKARLLKDYI  IRA YT+DF N+KDP K+QIAVATYLIDKLALRAGNEKD
Sbjct: 601  KGQSDKEKYEKARLLKDYIHGIRAAYTKDFTNNKDPMKKQIAVATYLIDKLALRAGNEKD 660

Query: 1820 DDEADTVGCCTLKVENVELVPPNKLKFDFLGKDSIRYLNTVEVEPPVYKAIGDFQTAKRS 1999
            DDEADTVGCCTLKVENVE VPPN LKFDFLGKDSIRY N V+VEP V+KAI  F++ K  
Sbjct: 661  DDEADTVGCCTLKVENVEPVPPNILKFDFLGKDSIRYQNEVQVEPAVFKAIQQFRSGKEG 720

Query: 2000 NXXXXXXXXXXXXXXXTSKLNTHLKELMPGLTAKVFRTYNASITLDAILNKETKDGTAPE 2179
            +               TSKLN HLKELMPGLTAKVFRTYNASITLD +L+KETK G   E
Sbjct: 721  S-------EDLFDRLDTSKLNAHLKELMPGLTAKVFRTYNASITLDDMLSKETKGGEVAE 773

Query: 2180 KIAVYQHANKEVAIICNHQRSVSKSHENQMSKLNEKINDLKAQREELSTDLNRARKGKPP 2359
            K+ VYQHANKEVAIICNHQR+VSKSH  QMS+LNEKI++LK   EEL TDL+R +KGKPP
Sbjct: 774  KVVVYQHANKEVAIICNHQRTVSKSHSAQMSRLNEKIDELKTAMEELKTDLSRVKKGKPP 833

Query: 2360 LKDKEGKTKKNLAPEAIGKKIAQIDAKIEKMEIDKQIKEDLKTVALGTSKINYLDPRISV 2539
             K  +GK K+NL PEA+ +K+AQI+AKIEKME DK+ KEDLKTVALGTSKINYLDPRI+V
Sbjct: 834  SKGADGKPKRNLNPEALERKMAQINAKIEKMERDKETKEDLKTVALGTSKINYLDPRITV 893

Query: 2540 AWCKRHEVPIEKIFNKSL 2593
            AWCKRHEVPIEKIFNKSL
Sbjct: 894  AWCKRHEVPIEKIFNKSL 911


>gb|AFW61219.1| DNA topoisomerase I [Zea mays]
          Length = 602

 Score =  869 bits (2246), Expect = 0.0
 Identities = 421/543 (77%), Positives = 468/543 (86%)
 Frame = +2

Query: 965  PPGSGGGQKWTTLEHNGVIFPPPYKPHGVKMLYKGQPVDLTPEQEEVATMFAVMKDTDYA 1144
            PPGSGGG+KWTTLEHNGVIFPPPYKPHGVKMLY G+P+DLTPEQEEVATMFAVMKDTDYA
Sbjct: 51   PPGSGGGKKWTTLEHNGVIFPPPYKPHGVKMLYNGKPIDLTPEQEEVATMFAVMKDTDYA 110

Query: 1145 SKKQFIENFMHDWRLMLGKNHIIKKFELCDFTPIYEWHLKEKEKKKQMTSXXXXXXXXXX 1324
            +K  FI+NF  DWR +LGKNHIIK FELCDFTPIYEWHL+EKE+KKQMT+          
Sbjct: 111  AKPTFIDNFFTDWRKVLGKNHIIKNFELCDFTPIYEWHLREKERKKQMTTEEKKTLREDK 170

Query: 1325 XXXXXXYMWAIVDGVKEKVGNFRVEPPGLFRGRGEHPKMGKLKQRIRPKDITINIGKDAP 1504
                  YMWA+VDGVKEKVGNFRVEPPGLFRGRGEHPKMGKLK+RI P DITINIGK AP
Sbjct: 171  LKQEEKYMWAVVDGVKEKVGNFRVEPPGLFRGRGEHPKMGKLKRRILPSDITINIGKGAP 230

Query: 1505 IPECPIPGERWKEIKHDNTVTWLAFWNDPINPKEFKYVFLAASSSLKGQSDKEKYEKARL 1684
            +PECPIPGE WKE+KHDNTVTWLAFWNDPINPK+FKYVFLAASSSLKGQSDKEKYEK+R 
Sbjct: 231  VPECPIPGESWKEVKHDNTVTWLAFWNDPINPKDFKYVFLAASSSLKGQSDKEKYEKSRK 290

Query: 1685 LKDYIQNIRANYTRDFNSKDPTKRQIAVATYLIDKLALRAGNEKDDDEADTVGCCTLKVE 1864
            LK +IQ IR NYT+DF +KD T+RQIAVATYLIDKLALRAGNEKDDDEADTVGCCTLKV+
Sbjct: 291  LKGHIQRIRENYTKDFKNKDVTRRQIAVATYLIDKLALRAGNEKDDDEADTVGCCTLKVD 350

Query: 1865 NVELVPPNKLKFDFLGKDSIRYLNTVEVEPPVYKAIGDFQTAKRSNXXXXXXXXXXXXXX 2044
            NV  +PPN+++FDFLGKDSIRY NTVEVE  VYKAI  F+  K+                
Sbjct: 351  NVTCMPPNQIQFDFLGKDSIRYFNTVEVEELVYKAIEGFRAGKKPG-------QDLFDKI 403

Query: 2045 XTSKLNTHLKELMPGLTAKVFRTYNASITLDAILNKETKDGTAPEKIAVYQHANKEVAII 2224
             TS+LN HLK+LMPGLTAKVFRTYNASITLD IL++ET+DGT  EKIAVYQ ANKEVAII
Sbjct: 404  DTSRLNAHLKDLMPGLTAKVFRTYNASITLDGILHEETEDGTVLEKIAVYQRANKEVAII 463

Query: 2225 CNHQRSVSKSHENQMSKLNEKINDLKAQREELSTDLNRARKGKPPLKDKEGKTKKNLAPE 2404
            CNHQRSVSKSHE+QM+++NEKI++LK+Q EEL  DLN+A+KGKP   D EGK K+NLAPE
Sbjct: 464  CNHQRSVSKSHESQMTRMNEKIDELKSQMEELKADLNKAKKGKPLGYDSEGKPKRNLAPE 523

Query: 2405 AIGKKIAQIDAKIEKMEIDKQIKEDLKTVALGTSKINYLDPRISVAWCKRHEVPIEKIFN 2584
            AI KK+A ++ KIEKME+DK+IKEDLKTVALGTSKINYLDPRI+VAWCKRHEVPIEKIFN
Sbjct: 524  AIQKKVATLEGKIEKMEMDKRIKEDLKTVALGTSKINYLDPRITVAWCKRHEVPIEKIFN 583

Query: 2585 KSL 2593
            KSL
Sbjct: 584  KSL 586


>gb|ACL52396.1| unknown [Zea mays]
          Length = 574

 Score =  869 bits (2246), Expect = 0.0
 Identities = 421/543 (77%), Positives = 468/543 (86%)
 Frame = +2

Query: 965  PPGSGGGQKWTTLEHNGVIFPPPYKPHGVKMLYKGQPVDLTPEQEEVATMFAVMKDTDYA 1144
            PPGSGGG+KWTTLEHNGVIFPPPYKPHGVKMLY G+P+DLTPEQEEVATMFAVMKDTDYA
Sbjct: 23   PPGSGGGKKWTTLEHNGVIFPPPYKPHGVKMLYNGKPIDLTPEQEEVATMFAVMKDTDYA 82

Query: 1145 SKKQFIENFMHDWRLMLGKNHIIKKFELCDFTPIYEWHLKEKEKKKQMTSXXXXXXXXXX 1324
            +K  FI+NF  DWR +LGKNHIIK FELCDFTPIYEWHL+EKE+KKQMT+          
Sbjct: 83   AKPTFIDNFFTDWRKVLGKNHIIKNFELCDFTPIYEWHLREKERKKQMTTEEKKTLREDK 142

Query: 1325 XXXXXXYMWAIVDGVKEKVGNFRVEPPGLFRGRGEHPKMGKLKQRIRPKDITINIGKDAP 1504
                  YMWA+VDGVKEKVGNFRVEPPGLFRGRGEHPKMGKLK+RI P DITINIGK AP
Sbjct: 143  LKQEEKYMWAVVDGVKEKVGNFRVEPPGLFRGRGEHPKMGKLKRRILPSDITINIGKGAP 202

Query: 1505 IPECPIPGERWKEIKHDNTVTWLAFWNDPINPKEFKYVFLAASSSLKGQSDKEKYEKARL 1684
            +PECPIPGE WKE+KHDNTVTWLAFWNDPINPK+FKYVFLAASSSLKGQSDKEKYEK+R 
Sbjct: 203  VPECPIPGESWKEVKHDNTVTWLAFWNDPINPKDFKYVFLAASSSLKGQSDKEKYEKSRK 262

Query: 1685 LKDYIQNIRANYTRDFNSKDPTKRQIAVATYLIDKLALRAGNEKDDDEADTVGCCTLKVE 1864
            LK +IQ IR NYT+DF +KD T+RQIAVATYLIDKLALRAGNEKDDDEADTVGCCTLKV+
Sbjct: 263  LKGHIQRIRENYTKDFKNKDVTRRQIAVATYLIDKLALRAGNEKDDDEADTVGCCTLKVD 322

Query: 1865 NVELVPPNKLKFDFLGKDSIRYLNTVEVEPPVYKAIGDFQTAKRSNXXXXXXXXXXXXXX 2044
            NV  +PPN+++FDFLGKDSIRY NTVEVE  VYKAI  F+  K+                
Sbjct: 323  NVTCMPPNQIQFDFLGKDSIRYFNTVEVEELVYKAIEGFRAGKKPG-------QDLFDKI 375

Query: 2045 XTSKLNTHLKELMPGLTAKVFRTYNASITLDAILNKETKDGTAPEKIAVYQHANKEVAII 2224
             TS+LN HLK+LMPGLTAKVFRTYNASITLD IL++ET+DGT  EKIAVYQ ANKEVAII
Sbjct: 376  DTSRLNAHLKDLMPGLTAKVFRTYNASITLDGILHEETEDGTVLEKIAVYQRANKEVAII 435

Query: 2225 CNHQRSVSKSHENQMSKLNEKINDLKAQREELSTDLNRARKGKPPLKDKEGKTKKNLAPE 2404
            CNHQRSVSKSHE+QM+++NEKI++LK+Q EEL  DLN+A+KGKP   D EGK K+NLAPE
Sbjct: 436  CNHQRSVSKSHESQMTRMNEKIDELKSQMEELKADLNKAKKGKPLGYDSEGKPKRNLAPE 495

Query: 2405 AIGKKIAQIDAKIEKMEIDKQIKEDLKTVALGTSKINYLDPRISVAWCKRHEVPIEKIFN 2584
            AI KK+A ++ KIEKME+DK+IKEDLKTVALGTSKINYLDPRI+VAWCKRHEVPIEKIFN
Sbjct: 496  AIQKKVATLEGKIEKMEMDKRIKEDLKTVALGTSKINYLDPRITVAWCKRHEVPIEKIFN 555

Query: 2585 KSL 2593
            KSL
Sbjct: 556  KSL 558


>ref|XP_006364175.1| PREDICTED: LOW QUALITY PROTEIN: DNA topoisomerase 1-like [Solanum
            tuberosum]
          Length = 905

 Score =  868 bits (2243), Expect = 0.0
 Identities = 486/903 (53%), Positives = 572/903 (63%), Gaps = 39/903 (4%)
 Frame = +2

Query: 2    EEDDDAPLVFRRANSSSKQRHLSSTSKKTDTQKDAGSNLVSNQIAQNGESSHLQNVKLLS 181
            ++DDD PLVF+R++++SKQ   +S+S+K D +       V +  + NG+SS    VK  +
Sbjct: 16   DDDDDMPLVFKRSSTTSKQNQSNSSSQKQDGRS---GRQVPDVRSPNGQSSSTHKVKTAA 72

Query: 182  KA------------------SSEKPXXXXXTSVAVQRKRSMEVEKICMHSKGDNFTSGSA 307
             +                  S   P     TS A    R+            ++  S SA
Sbjct: 73   SSKASPAVSPLTSPKAAPLSSRTSPAPNFRTSPA-PNSRTPPAPNSRTSPAPNSRPSSSA 131

Query: 308  GNM--------------------DLSKSNIKSENSDDDKPLSLKYSSSGIVNRSASLQAV 427
            GN                       S+ N ++E+S+DDKPLS +  S   +++S S+ A 
Sbjct: 132  GNQAKNVNQQSNIAPKESKQAIEPKSEPNDEAEDSEDDKPLSARVPSG--LSKSNSIHA- 188

Query: 428  KASQSTKPLPLSVKLXXXXXXXXXXXXXXXPLLSRFQSKAIGGSSMKDSNVAEXXXXXXX 607
                    L  S  +               PL SRFQ K+  G+S    + +E       
Sbjct: 189  -----NNVLGTSTSVQKSRPPKKEDSDDEIPLASRFQMKSSAGASTSKFSSSEEVKPKIR 243

Query: 608  XXXXXXXXXXXXXXXXXGGQKRPLSGANPXXXXXXXXXXXXXXXXXXXXXQEDFVKKESK 787
                                KRP  G                            VK E K
Sbjct: 244  QNGLPSATVL---------SKRP-PGEVSLLLRLQLKSLDFLMHLHLFLVSNXSVKTEKK 293

Query: 788  T-DDNDHLPIAQRMKKTVSSNSASISKNALHXXXXXXXXXXXXXXXXXXXXXXXXXXXXX 964
            T DD+D +P++QR+KK V+S SAS SK +                               
Sbjct: 294  TEDDDDEVPLSQRIKKAVASASASASKVSSVKKATKVVSSSMKKTKKKLKKPKYSKSSKL 353

Query: 965  PPGSGGGQKWTTLEHNGVIFPPPYKPHGVKMLYKGQPVDLTPEQEEVATMFAVMKDTDYA 1144
             P SG GQKWTTLEHNGVIFPPPYKPHGVKMLYKG+PVDLTPEQEEVATM+AVM DT+Y 
Sbjct: 354  QPSSGDGQKWTTLEHNGVIFPPPYKPHGVKMLYKGKPVDLTPEQEEVATMYAVMLDTEYL 413

Query: 1145 SKKQFIENFMHDWRLMLGKNHIIKKFELCDFTPIYEWHLKEKEKKKQMTSXXXXXXXXXX 1324
            +K+QF ENFM+DWR +LGKNH+I+K E C+FTPIYEWH  EKEKKKQM+S          
Sbjct: 414  TKQQFKENFMNDWRKILGKNHVIQKLEECNFTPIYEWHQSEKEKKKQMSSEEKKALREEK 473

Query: 1325 XXXXXXYMWAIVDGVKEKVGNFRVEPPGLFRGRGEHPKMGKLKQRIRPKDITINIGKDAP 1504
                  YMWAIVDGVKEKVGNFRVEPPGLFRGRGEHPKMGKLK+RIRP DITINIGK  P
Sbjct: 474  LKQEEKYMWAIVDGVKEKVGNFRVEPPGLFRGRGEHPKMGKLKRRIRPNDITINIGKGVP 533

Query: 1505 IPECPIPGERWKEIKHDNTVTWLAFWNDPINPKEFKYVFLAASSSLKGQSDKEKYEKARL 1684
            +PECPIPG+RWKE++HDNTVTWLAFWNDPINP+EFKYVFLAASSSLKGQSDKEKYEKAR 
Sbjct: 534  VPECPIPGQRWKEVRHDNTVTWLAFWNDPINPREFKYVFLAASSSLKGQSDKEKYEKARR 593

Query: 1685 LKDYIQNIRANYTRDFNSKDPTKRQIAVATYLIDKLALRAGNEKDDDEADTVGCCTLKVE 1864
            LKDYI+ IR+ YT+DF SKDP KRQIAVATYLIDKLALRAGNEKDDDEADTVGCCTLKVE
Sbjct: 594  LKDYIEGIRSAYTKDFTSKDPVKRQIAVATYLIDKLALRAGNEKDDDEADTVGCCTLKVE 653

Query: 1865 NVELVPPNKLKFDFLGKDSIRYLNTVEVEPPVYKAIGDFQTAKRSNXXXXXXXXXXXXXX 2044
            NVE VPPN LKFDFLGKDSIRY N V V  PV+KAI  F++ K+                
Sbjct: 654  NVEPVPPNILKFDFLGKDSIRYQNEVAVYEPVFKAIQQFRSGKKGG-------DDLFDKL 706

Query: 2045 XTSKLNTHLKELMPGLTAKVFRTYNASITLDAILNKETKDGTAPEKIAVYQHANKEVAII 2224
             TSKLN HLKELMPGLTAKVFRTYNAS TL+  L K T+ G   +K+AVY  ANKEVAII
Sbjct: 707  DTSKLNAHLKELMPGLTAKVFRTYNASFTLEQQLTKLTQGGELADKVAVYNVANKEVAII 766

Query: 2225 CNHQRSVSKSHENQMSKLNEKINDLKAQREELSTDLNRARKGKPPLKDKEGKTKKNLAPE 2404
            CNHQR+VSKSH  Q+S+LNEKI++LKA  EE   DL RA+KGKPP+K  +GK K+NL PE
Sbjct: 767  CNHQRTVSKSHSVQISRLNEKIDELKAILEEFKVDLARAKKGKPPVKGADGKAKRNLTPE 826

Query: 2405 AIGKKIAQIDAKIEKMEIDKQIKEDLKTVALGTSKINYLDPRISVAWCKRHEVPIEKIFN 2584
            A+ KKI Q + KI+ +E   + KE+LKTVALGTSKINYLDPRI+VAWCKRHEVPIEK+FN
Sbjct: 827  ALQKKIDQTNVKIDNIERQIETKEELKTVALGTSKINYLDPRITVAWCKRHEVPIEKMFN 886

Query: 2585 KSL 2593
            KSL
Sbjct: 887  KSL 889


>ref|XP_006474977.1| PREDICTED: DNA topoisomerase 1-like isoform X1 [Citrus sinensis]
            gi|568842074|ref|XP_006474978.1| PREDICTED: DNA
            topoisomerase 1-like isoform X2 [Citrus sinensis]
            gi|568842076|ref|XP_006474979.1| PREDICTED: DNA
            topoisomerase 1-like isoform X3 [Citrus sinensis]
            gi|568842078|ref|XP_006474980.1| PREDICTED: DNA
            topoisomerase 1-like isoform X4 [Citrus sinensis]
          Length = 902

 Score =  864 bits (2232), Expect = 0.0
 Identities = 486/888 (54%), Positives = 562/888 (63%), Gaps = 24/888 (2%)
 Frame = +2

Query: 2    EEDDDAPLVFRRANSSSKQRHLSSTSKKTDTQKDAGSNLVSNQIAQNGESSHLQNVKL-- 175
            ++D+D P VF+R  ++S+Q   +   K+  +    G N  + +      SS +  VK   
Sbjct: 16   DDDEDGPAVFKRNTAASRQNLANPEVKRPSSSTANGQNSNAPKDKTTVSSSKVLPVKSPP 75

Query: 176  --------LSKASSEK---------PXXXXXTSVAVQRKRSMEVEKICMHSKGDNFTSGS 304
                     +KAS  K         P      S     K S  ++     S   N  +  
Sbjct: 76   PSQKATTSSAKASPSKSPMRSPVKSPVRSPVKSPVANSKESSPLDDRLKQSPQHNALAVV 135

Query: 305  AGNMDLSKSNIKSENSD--DDKPLSLKYSSSGIVNRSASLQAVKASQSTKPLPLSVKLXX 478
                    + +KS+++D  DDKPLS +   +   N +  + A KA  +   + +      
Sbjct: 136  KKEEIKDGNGLKSDDNDSEDDKPLSARLKGNS-KNVNQGIGASKADAAISEVNVKTD--- 191

Query: 479  XXXXXXXXXXXXXPLLSRFQSKAIGGSSMKDSNVAEXXXXXXXXXXXXXXXXXXXXXXXX 658
                         PL SRF     G S  K  +  E                        
Sbjct: 192  -----PEDSDDEVPLSSRFPKSNAGTSGAKPIDSDEKKPLASKVQQNGSTSRETQQKSSS 246

Query: 659  GGQKRPLSGANPXXXXXXXXXXXXXXXXXXXXXQEDFVKKESKTDDNDHLPIAQRMKKTV 838
               KRPL  A+                      Q   VK E K DD+DH+PI+QRMK + 
Sbjct: 247  VPVKRPLQKASSSGASSAKKPKVSDTSKEVKVKQVT-VKVEKKADDDDHIPISQRMKNSA 305

Query: 839  SSNSASISKNALHXXXXXXXXXXXXXXXXXXXXXXXXXXXXXP-PGSGGGQK-WTTLEHN 1012
             S   S++  A                                 PGSG GQK WTTL HN
Sbjct: 306  PSVKKSVTNTAKATKSVSSSSNKINKKTKKVIKNSQYSKSTKMLPGSGDGQKKWTTLVHN 365

Query: 1013 GVIFPPPYKPHGVKMLYKGQPVDLTPEQEEVATMFAVMKDTDYASKKQFIENFMHDWRLM 1192
            GVIFPPPY PHGVKMLYKG+ V+LTPEQEEVATMFAVM DTDY  K +F ENF +DWR +
Sbjct: 366  GVIFPPPYLPHGVKMLYKGKEVNLTPEQEEVATMFAVMLDTDYMQKPKFRENFWNDWRKL 425

Query: 1193 LGKNHIIKKFELCDFTPIYEWHLKEKEKKKQMTSXXXXXXXXXXXXXXXXYMWAIVDGVK 1372
            LGKNH+I+  E CDF PIY+WH ++KEKKKQM+S                YMWAIVDGVK
Sbjct: 426  LGKNHVIQNLEGCDFKPIYDWHQEQKEKKKQMSSEEKKALKEEKLKQEEKYMWAIVDGVK 485

Query: 1373 EKVGNFRVEPPGLFRGRGEHPKMGKLKQRIRPKDITINIGKDAPIPECPIPGERWKEIKH 1552
            EKVGNFRVEPPGLFRGRGEHPKMGKLK+RI+P DITINIGKD PIPECPIPGE WKE+KH
Sbjct: 486  EKVGNFRVEPPGLFRGRGEHPKMGKLKKRIQPSDITINIGKDVPIPECPIPGESWKEVKH 545

Query: 1553 DNTVTWLAFWNDPINPKEFKYVFLAASSSLKGQSDKEKYEKARLLKDYIQNIRANYTRDF 1732
            DNTVTWLAFWNDPINPKEFKYVFLAASSSLKGQSDKEKYEKAR LKDYI +IRA YT+DF
Sbjct: 546  DNTVTWLAFWNDPINPKEFKYVFLAASSSLKGQSDKEKYEKARKLKDYIHSIRAAYTKDF 605

Query: 1733 NSKDPTKRQIAVATYLIDKLALRAGNEKDDDEADTVGCCTLKVENVELVPPNKLKFDFLG 1912
             S+D T+RQIAVATYLIDKLALRAGNEKDDDEADTVGCCTLKV NVE +PPNKLKFDFLG
Sbjct: 606  VSRDGTRRQIAVATYLIDKLALRAGNEKDDDEADTVGCCTLKVGNVECIPPNKLKFDFLG 665

Query: 1913 KDSIRYLNTVEVEPPVYKAIGDFQTAKRSNXXXXXXXXXXXXXXXTSKLNTHLKELMPGL 2092
            KDSI+Y+NTVEVE PVYKAIG FQT K+ N               T+KLN HLKELMPGL
Sbjct: 666  KDSIQYVNTVEVELPVYKAIGQFQTGKKQN-------DDLFDKLDTAKLNAHLKELMPGL 718

Query: 2093 TAKVFRTYNASITLDAILNKETKDGTAPEKIAVYQHANKEVAIICNHQRSVSKSHENQMS 2272
            TAKVFRTYNASITLD +LNK T DG    KI VYQ ANKEVAIICNHQR+VSK+H  QMS
Sbjct: 719  TAKVFRTYNASITLDGMLNKGTGDGDVAVKIDVYQRANKEVAIICNHQRTVSKTHSAQMS 778

Query: 2273 KLNEKINDLKAQREELSTDLNRARKGKPPL-KDKEGKTKKNLAPEAIGKKIAQIDAKIEK 2449
            +L EKI DLK   ++L  DL+RA+KGKPPL KD +GK K+NLAPEA+ +K+AQ +AKIEK
Sbjct: 779  RLTEKIEDLKGVLKDLRVDLDRAKKGKPPLMKDSDGKRKRNLAPEALERKMAQTNAKIEK 838

Query: 2450 MEIDKQIKEDLKTVALGTSKINYLDPRISVAWCKRHEVPIEKIFNKSL 2593
            ME D + KEDLKTVALGTSKINYLDPRI+VAWCKRHEVPIEKIFNKSL
Sbjct: 839  MERDMKTKEDLKTVALGTSKINYLDPRITVAWCKRHEVPIEKIFNKSL 886


>gb|EMT20272.1| DNA topoisomerase 1 [Aegilops tauschii]
          Length = 949

 Score =  864 bits (2232), Expect = 0.0
 Identities = 428/611 (70%), Positives = 488/611 (79%), Gaps = 3/611 (0%)
 Frame = +2

Query: 770  VKKESKTDDNDHLPIAQRMKKTVSSNSASISKNALHXXXXXXXXXXXXXXXXXXXXXXXX 949
            VK+ESK DDN+ +P+ +++    SS S    KN +                         
Sbjct: 330  VKRESKVDDNNSVPVERKLTPGESSKSKPPVKNIVKKSPLSVKKDNKKFKTKTKKTMKSS 389

Query: 950  XXXXX---PPGSGGGQKWTTLEHNGVIFPPPYKPHGVKMLYKGQPVDLTPEQEEVATMFA 1120
                    PPGSGGG+KW+TLEHNGVIFPPPY PHGVKMLY GQPV+LTPE+EEVATMFA
Sbjct: 390  QFSKSLRVPPGSGGGKKWSTLEHNGVIFPPPYNPHGVKMLYNGQPVELTPEEEEVATMFA 449

Query: 1121 VMKDTDYASKKQFIENFMHDWRLMLGKNHIIKKFELCDFTPIYEWHLKEKEKKKQMTSXX 1300
            VMKDT+YA+KK FI+NF  DW+ +LGKNHIIKKFELCDFTPIYEWHL+EKEKKKQMTS  
Sbjct: 450  VMKDTEYAAKKTFIDNFFGDWKKILGKNHIIKKFELCDFTPIYEWHLREKEKKKQMTSEE 509

Query: 1301 XXXXXXXXXXXXXXYMWAIVDGVKEKVGNFRVEPPGLFRGRGEHPKMGKLKQRIRPKDIT 1480
                          YMWA+VDGV+EKVGNFRVEPPGLFRGRGEHPKMGKLK+RIRP DIT
Sbjct: 510  RKALREEKLKQEEKYMWAVVDGVREKVGNFRVEPPGLFRGRGEHPKMGKLKRRIRPSDIT 569

Query: 1481 INIGKDAPIPECPIPGERWKEIKHDNTVTWLAFWNDPINPKEFKYVFLAASSSLKGQSDK 1660
            INIGK  P+PECPI GE WKE+KHDNTVTWLAFWNDPI+ K+FKYVFLAASSSLKGQSDK
Sbjct: 570  INIGKGTPVPECPIEGESWKEVKHDNTVTWLAFWNDPISQKDFKYVFLAASSSLKGQSDK 629

Query: 1661 EKYEKARLLKDYIQNIRANYTRDFNSKDPTKRQIAVATYLIDKLALRAGNEKDDDEADTV 1840
            EKYEK+R LKD+I NIR NYT+DFNSKD +K+QIAVATYLIDKLALRAGNEKDDDEADTV
Sbjct: 630  EKYEKSRKLKDHIHNIRVNYTKDFNSKDVSKKQIAVATYLIDKLALRAGNEKDDDEADTV 689

Query: 1841 GCCTLKVENVELVPPNKLKFDFLGKDSIRYLNTVEVEPPVYKAIGDFQTAKRSNXXXXXX 2020
            GCCTLKV+NV  VPPNKL+FDFLGKDSIRY NTVEVE PVY AI +F+T K+        
Sbjct: 690  GCCTLKVDNVTCVPPNKLQFDFLGKDSIRYFNTVEVELPVYNAIEEFRTGKKDG------ 743

Query: 2021 XXXXXXXXXTSKLNTHLKELMPGLTAKVFRTYNASITLDAILNKETKDGTAPEKIAVYQH 2200
                     T+KLN HLK+LMPGLTAKVFRTYNASITLDAIL++ET+DGT  EKIAVYQ 
Sbjct: 744  -DAVFDQLDTTKLNHHLKDLMPGLTAKVFRTYNASITLDAILHEETEDGTLLEKIAVYQR 802

Query: 2201 ANKEVAIICNHQRSVSKSHENQMSKLNEKINDLKAQREELSTDLNRARKGKPPLKDKEGK 2380
            ANKEVAIICNHQR+VSKSH+ QM+KLNEKI++LKAQ  EL+ DL + ++GKP     +GK
Sbjct: 803  ANKEVAIICNHQRAVSKSHDTQMTKLNEKIDELKAQINELNKDLGKVKRGKPLGNGADGK 862

Query: 2381 TKKNLAPEAIGKKIAQIDAKIEKMEIDKQIKEDLKTVALGTSKINYLDPRISVAWCKRHE 2560
             K+ LAPEAI KKI+QI+ K+EKME+DK+ KEDLKTVALGTSKINYLDPRI+VAWCK HE
Sbjct: 863  PKRALAPEAIEKKISQIETKVEKMEMDKKTKEDLKTVALGTSKINYLDPRITVAWCKTHE 922

Query: 2561 VPIEKIFNKSL 2593
            VPIEKIF+K++
Sbjct: 923  VPIEKIFSKTI 933