BLASTX nr result
ID: Zingiber24_contig00016434
seq
BLASTX 2.2.25 [Feb-01-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= Zingiber24_contig00016434
(273 letters)
Database: ./nr
37,332,560 sequences; 13,225,080,153 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
ref|XP_002528057.1| DNA ligase I, putative [Ricinus communis] gi... 80 2e-13
gb|EOY04062.1| DNA ligase [Theobroma cacao] 69 5e-10
ref|XP_006300589.1| hypothetical protein CARUB_v10019664mg [Caps... 69 5e-10
ref|XP_002266168.2| PREDICTED: uncharacterized protein LOC100266... 69 8e-10
ref|XP_002305846.2| hypothetical protein POPTR_0004s09310g [Popu... 68 1e-09
tpg|DAA58079.1| TPA: putative DNA ligase family protein, partial... 68 1e-09
ref|XP_003567002.1| PREDICTED: uncharacterized protein LOC100835... 67 2e-09
emb|CBI33596.3| unnamed protein product [Vitis vinifera] 67 2e-09
gb|EEE55195.1| hypothetical protein OsJ_03041 [Oryza sativa Japo... 67 3e-09
ref|XP_006430691.1| hypothetical protein CICLE_v10010910mg [Citr... 66 4e-09
ref|XP_006430690.1| hypothetical protein CICLE_v10010910mg [Citr... 66 4e-09
ref|XP_006391424.1| hypothetical protein EUTSA_v10018010mg [Eutr... 65 7e-09
gb|EMT05758.1| hypothetical protein F775_52464 [Aegilops tauschii] 65 9e-09
gb|EMS67719.1| DNA cross-link repair 1A protein [Triticum urartu] 65 9e-09
ref|XP_002887071.1| ATP dependent DNA ligase family protein [Ara... 65 9e-09
ref|XP_006357803.1| PREDICTED: DNA ligase 1-like [Solanum tubero... 65 1e-08
gb|AAG60081.1|AC013288_15 DNA ligase I, putative [Arabidopsis th... 64 2e-08
ref|XP_006482182.1| PREDICTED: DNA ligase 1-like isoform X2 [Cit... 64 2e-08
ref|XP_006482181.1| PREDICTED: DNA ligase 1-like isoform X1 [Cit... 64 2e-08
ref|NP_176845.2| DNA ligase 6 [Arabidopsis thaliana] gi|33219642... 64 2e-08
>ref|XP_002528057.1| DNA ligase I, putative [Ricinus communis]
gi|223532518|gb|EEF34307.1| DNA ligase I, putative
[Ricinus communis]
Length = 1360
Score = 80.5 bits (197), Expect = 2e-13
Identities = 48/100 (48%), Positives = 58/100 (58%), Gaps = 10/100 (10%)
Frame = +2
Query: 2 RVIPTVGVDIETPDSKHALAMKKHFRGLVDEMANKHDFLLALHRKSDSADLISGNDITVD 181
RVIPTVGVDIE DSKHA+ M+KHF GLVDEMANK FL+ HR+S +D D D
Sbjct: 366 RVIPTVGVDIENLDSKHAVKMQKHFAGLVDEMANKKQFLMVFHRESSESDEKVEMDDVPD 425
Query: 182 LNLHGDVDSENIP----------LQPDMQNFSRLNVEDME 271
LN G V + P +P QN + +N E+ E
Sbjct: 426 LN-KGLVQEKKDPSVVLNSSSTLQEPGSQNLTTINDEETE 464
>gb|EOY04062.1| DNA ligase [Theobroma cacao]
Length = 1404
Score = 69.3 bits (168), Expect = 5e-10
Identities = 38/77 (49%), Positives = 48/77 (62%)
Frame = +2
Query: 2 RVIPTVGVDIETPDSKHALAMKKHFRGLVDEMANKHDFLLALHRKSDSADLISGNDITVD 181
+VIPTVG+DIE DSKHA M+KHF GLVDEMANK DFL+ HR + D +
Sbjct: 364 KVIPTVGMDIEKLDSKHADKMRKHFAGLVDEMANKKDFLMGFHRGNGENMEKVEVDASAG 423
Query: 182 LNLHGDVDSENIPLQPD 232
LN D++ + L+ D
Sbjct: 424 LNEEQDLEIKQNILEMD 440
>ref|XP_006300589.1| hypothetical protein CARUB_v10019664mg [Capsella rubella]
gi|482569299|gb|EOA33487.1| hypothetical protein
CARUB_v10019664mg [Capsella rubella]
Length = 1405
Score = 69.3 bits (168), Expect = 5e-10
Identities = 38/59 (64%), Positives = 42/59 (71%)
Frame = +2
Query: 2 RVIPTVGVDIETPDSKHALAMKKHFRGLVDEMANKHDFLLALHRKSDSADLISGNDITV 178
RVIPTVGVDIET DSK M+KHF GLVDEMANK DFLL +R+S + NDI V
Sbjct: 376 RVIPTVGVDIETLDSKEVNKMQKHFSGLVDEMANKKDFLLGFYRQSYQKN--EKNDIDV 432
>ref|XP_002266168.2| PREDICTED: uncharacterized protein LOC100266816 [Vitis vinifera]
Length = 1449
Score = 68.6 bits (166), Expect = 8e-10
Identities = 38/68 (55%), Positives = 43/68 (63%)
Frame = +2
Query: 2 RVIPTVGVDIETPDSKHALAMKKHFRGLVDEMANKHDFLLALHRKSDSADLISGNDITVD 181
RVIPTVG+DIE DSKHA AM+KHF GLVDEMA KH+FL R AD N+
Sbjct: 412 RVIPTVGLDIEKLDSKHANAMRKHFAGLVDEMAIKHEFLKGFQRGCLEADENVENNTRTV 471
Query: 182 LNLHGDVD 205
LN D +
Sbjct: 472 LNKELDAE 479
>ref|XP_002305846.2| hypothetical protein POPTR_0004s09310g [Populus trichocarpa]
gi|550340657|gb|EEE86357.2| hypothetical protein
POPTR_0004s09310g [Populus trichocarpa]
Length = 1388
Score = 68.2 bits (165), Expect = 1e-09
Identities = 36/62 (58%), Positives = 40/62 (64%)
Frame = +2
Query: 2 RVIPTVGVDIETPDSKHALAMKKHFRGLVDEMANKHDFLLALHRKSDSADLISGNDITVD 181
RVIPTVGVD+E DSKHA M+KHF GLVDEMANK +FL+ R S D D
Sbjct: 371 RVIPTVGVDVEKLDSKHAAKMQKHFAGLVDEMANKKEFLMGFLRGSSENDKKVEMDAVSG 430
Query: 182 LN 187
LN
Sbjct: 431 LN 432
>tpg|DAA58079.1| TPA: putative DNA ligase family protein, partial [Zea mays]
Length = 885
Score = 68.2 bits (165), Expect = 1e-09
Identities = 41/89 (46%), Positives = 53/89 (59%)
Frame = +2
Query: 5 VIPTVGVDIETPDSKHALAMKKHFRGLVDEMANKHDFLLALHRKSDSADLISGNDITVDL 184
VIPT GVD DSK A+A++KHF GLVDE ANK +FL+A HR+S A S D+ V
Sbjct: 375 VIPTAGVDAGKLDSKEAVALQKHFAGLVDETANKQEFLMAFHRRSIDATR-SCKDVVV-- 431
Query: 185 NLHGDVDSENIPLQPDMQNFSRLNVEDME 271
N +D E+ L P + + S + ME
Sbjct: 432 NCSSQLDGEDAALLPAISSASEQQDKLME 460
>ref|XP_003567002.1| PREDICTED: uncharacterized protein LOC100835014 [Brachypodium
distachyon]
Length = 1365
Score = 67.0 bits (162), Expect = 2e-09
Identities = 40/85 (47%), Positives = 48/85 (56%)
Frame = +2
Query: 2 RVIPTVGVDIETPDSKHALAMKKHFRGLVDEMANKHDFLLALHRKSDSADLISGNDITVD 181
+VIPTVGVD D K A+A+KKHF GLVDE ANKH+FL H +S A L N V
Sbjct: 371 QVIPTVGVDGGKLDGKEAIALKKHFAGLVDETANKHEFLSVFHPRSICATL---NHEDVL 427
Query: 182 LNLHGDVDSENIPLQPDMQNFSRLN 256
D D E P++ N S L+
Sbjct: 428 AKCLRDQDGEEFASLPEINNASELS 452
>emb|CBI33596.3| unnamed protein product [Vitis vinifera]
Length = 1390
Score = 67.0 bits (162), Expect = 2e-09
Identities = 34/50 (68%), Positives = 37/50 (74%)
Frame = +2
Query: 2 RVIPTVGVDIETPDSKHALAMKKHFRGLVDEMANKHDFLLALHRKSDSAD 151
RVIPTVG+DIE DSKHA AM+KHF GLVDEMA KH+FL R AD
Sbjct: 369 RVIPTVGLDIEKLDSKHANAMRKHFAGLVDEMAIKHEFLKGFQRGCLEAD 418
>gb|EEE55195.1| hypothetical protein OsJ_03041 [Oryza sativa Japonica Group]
Length = 1455
Score = 66.6 bits (161), Expect = 3e-09
Identities = 40/84 (47%), Positives = 50/84 (59%), Gaps = 1/84 (1%)
Frame = +2
Query: 2 RVIPTVGVDIETPDSKHALAMKKHFRGLVDEMANKHDFLLALHRKSDSADLISGNDITVD 181
RVIPTVG+D DSK A A++KHF GLVDE ANK +FL+A HR S +A L + +T
Sbjct: 373 RVIPTVGLDGGKLDSKEAFALQKHFAGLVDETANKQEFLMAFHRSSRNATLGPEDAVTGL 432
Query: 182 LNLHGDV-DSENIPLQPDMQNFSR 250
G+V + E L P F R
Sbjct: 433 SQQEGEVQELEEATLLPASLAFER 456
>ref|XP_006430691.1| hypothetical protein CICLE_v10010910mg [Citrus clementina]
gi|557532748|gb|ESR43931.1| hypothetical protein
CICLE_v10010910mg [Citrus clementina]
Length = 1402
Score = 66.2 bits (160), Expect = 4e-09
Identities = 37/81 (45%), Positives = 49/81 (60%), Gaps = 4/81 (4%)
Frame = +2
Query: 2 RVIPTVGVDIETPDSKHALAMKKHFRGLVDEMANKHDFLLALHRKSDSADLI----SGND 169
RVIPTVG+DIE DSKHA M+K+F GLVDEMA+K +FL+ HR + D +G+
Sbjct: 362 RVIPTVGMDIEKLDSKHANKMRKYFAGLVDEMASKKEFLMGFHRGTSEIDENVEEGAGSG 421
Query: 170 ITVDLNLHGDVDSENIPLQPD 232
L+ G+V S+ D
Sbjct: 422 SNEGLSKEGEVKSKKTKATED 442
>ref|XP_006430690.1| hypothetical protein CICLE_v10010910mg [Citrus clementina]
gi|557532747|gb|ESR43930.1| hypothetical protein
CICLE_v10010910mg [Citrus clementina]
Length = 1306
Score = 66.2 bits (160), Expect = 4e-09
Identities = 37/81 (45%), Positives = 49/81 (60%), Gaps = 4/81 (4%)
Frame = +2
Query: 2 RVIPTVGVDIETPDSKHALAMKKHFRGLVDEMANKHDFLLALHRKSDSADLI----SGND 169
RVIPTVG+DIE DSKHA M+K+F GLVDEMA+K +FL+ HR + D +G+
Sbjct: 362 RVIPTVGMDIEKLDSKHANKMRKYFAGLVDEMASKKEFLMGFHRGTSEIDENVEEGAGSG 421
Query: 170 ITVDLNLHGDVDSENIPLQPD 232
L+ G+V S+ D
Sbjct: 422 SNEGLSKEGEVKSKKTKATED 442
>ref|XP_006391424.1| hypothetical protein EUTSA_v10018010mg [Eutrema salsugineum]
gi|557087858|gb|ESQ28710.1| hypothetical protein
EUTSA_v10018010mg [Eutrema salsugineum]
Length = 1410
Score = 65.5 bits (158), Expect = 7e-09
Identities = 31/51 (60%), Positives = 37/51 (72%)
Frame = +2
Query: 2 RVIPTVGVDIETPDSKHALAMKKHFRGLVDEMANKHDFLLALHRKSDSADL 154
+VIPTVGVDIE DS+ M+KHF GLVDEMANK DFLL ++K D+
Sbjct: 379 KVIPTVGVDIEKLDSREVYKMQKHFSGLVDEMANKKDFLLGFYQKKKKNDI 429
>gb|EMT05758.1| hypothetical protein F775_52464 [Aegilops tauschii]
Length = 771
Score = 65.1 bits (157), Expect = 9e-09
Identities = 32/51 (62%), Positives = 39/51 (76%)
Frame = +2
Query: 2 RVIPTVGVDIETPDSKHALAMKKHFRGLVDEMANKHDFLLALHRKSDSADL 154
RVIPTVGVD D K A+A++KHF GLVDE ANKH+FL+A +R+S A L
Sbjct: 388 RVIPTVGVDGGKLDGKEAIALQKHFVGLVDETANKHEFLMAFNRRSAHASL 438
>gb|EMS67719.1| DNA cross-link repair 1A protein [Triticum urartu]
Length = 681
Score = 65.1 bits (157), Expect = 9e-09
Identities = 32/51 (62%), Positives = 39/51 (76%)
Frame = +2
Query: 2 RVIPTVGVDIETPDSKHALAMKKHFRGLVDEMANKHDFLLALHRKSDSADL 154
RVIPTVGVD D K A+A++KHF GLVDE ANKH+FL+A +R+S A L
Sbjct: 296 RVIPTVGVDGGKLDGKEAIALQKHFVGLVDETANKHEFLMAFNRRSAHASL 346
>ref|XP_002887071.1| ATP dependent DNA ligase family protein [Arabidopsis lyrata subsp.
lyrata] gi|297332912|gb|EFH63330.1| ATP dependent DNA
ligase family protein [Arabidopsis lyrata subsp. lyrata]
Length = 1413
Score = 65.1 bits (157), Expect = 9e-09
Identities = 35/60 (58%), Positives = 41/60 (68%), Gaps = 6/60 (10%)
Frame = +2
Query: 2 RVIPTVGVDIETPDSKHALAMKKHFRGLVDEMANKHDFLLALHRKS------DSADLISG 163
RVIPTVGVDIE DSK M+KHF GLVDEMANK DFLL + +S + D++SG
Sbjct: 379 RVIPTVGVDIEKLDSKEVNKMQKHFSGLVDEMANKKDFLLGFYCQSYQKNEKNDVDVVSG 438
>ref|XP_006357803.1| PREDICTED: DNA ligase 1-like [Solanum tuberosum]
Length = 1441
Score = 64.7 bits (156), Expect = 1e-08
Identities = 30/43 (69%), Positives = 34/43 (79%)
Frame = +2
Query: 5 VIPTVGVDIETPDSKHALAMKKHFRGLVDEMANKHDFLLALHR 133
VIPTVG D+E DSKHA AM+KHF GLVDEMA K +FL+ HR
Sbjct: 369 VIPTVGTDVEKLDSKHANAMRKHFAGLVDEMAIKQEFLMGFHR 411
>gb|AAG60081.1|AC013288_15 DNA ligase I, putative [Arabidopsis thaliana]
Length = 1417
Score = 64.3 bits (155), Expect = 2e-08
Identities = 32/46 (69%), Positives = 35/46 (76%)
Frame = +2
Query: 2 RVIPTVGVDIETPDSKHALAMKKHFRGLVDEMANKHDFLLALHRKS 139
RVIPTVGVDIE D K M+KHF GLVDEMANK DFLL +R+S
Sbjct: 372 RVIPTVGVDIEKFDCKEVNKMQKHFSGLVDEMANKKDFLLGFYRQS 417
>ref|XP_006482182.1| PREDICTED: DNA ligase 1-like isoform X2 [Citrus sinensis]
Length = 1306
Score = 64.3 bits (155), Expect = 2e-08
Identities = 30/50 (60%), Positives = 38/50 (76%)
Frame = +2
Query: 2 RVIPTVGVDIETPDSKHALAMKKHFRGLVDEMANKHDFLLALHRKSDSAD 151
+VIPTVG+DIE DSKHA M+K+F GLVDEMA+K +FL+ HR + D
Sbjct: 362 QVIPTVGMDIEKLDSKHANKMRKYFAGLVDEMASKKEFLMGFHRGTSEID 411
>ref|XP_006482181.1| PREDICTED: DNA ligase 1-like isoform X1 [Citrus sinensis]
Length = 1402
Score = 64.3 bits (155), Expect = 2e-08
Identities = 30/50 (60%), Positives = 38/50 (76%)
Frame = +2
Query: 2 RVIPTVGVDIETPDSKHALAMKKHFRGLVDEMANKHDFLLALHRKSDSAD 151
+VIPTVG+DIE DSKHA M+K+F GLVDEMA+K +FL+ HR + D
Sbjct: 362 QVIPTVGMDIEKLDSKHANKMRKYFAGLVDEMASKKEFLMGFHRGTSEID 411
>ref|NP_176845.2| DNA ligase 6 [Arabidopsis thaliana] gi|332196428|gb|AEE34549.1| DNA
ligase 6 [Arabidopsis thaliana]
Length = 1396
Score = 64.3 bits (155), Expect = 2e-08
Identities = 32/46 (69%), Positives = 35/46 (76%)
Frame = +2
Query: 2 RVIPTVGVDIETPDSKHALAMKKHFRGLVDEMANKHDFLLALHRKS 139
RVIPTVGVDIE D K M+KHF GLVDEMANK DFLL +R+S
Sbjct: 372 RVIPTVGVDIEKFDCKEVNKMQKHFSGLVDEMANKKDFLLGFYRQS 417