BLASTX nr result
ID: Zingiber24_contig00015713
seq
BLASTX 2.2.25 [Feb-01-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= Zingiber24_contig00015713
(733 letters)
Database: ./nr
37,332,560 sequences; 13,225,080,153 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
ref|XP_003581270.1| PREDICTED: pentatricopeptide repeat-containi... 107 3e-21
ref|XP_004978029.1| PREDICTED: pentatricopeptide repeat-containi... 107 5e-21
tpg|DAA37606.1| TPA: hypothetical protein ZEAMMB73_100135 [Zea m... 103 6e-20
ref|XP_002447917.1| hypothetical protein SORBIDRAFT_06g017980 [S... 102 1e-19
gb|EOY30252.1| Pentatricopeptide repeat superfamily protein, put... 102 1e-19
gb|AFW58380.1| hypothetical protein ZEAMMB73_073366 [Zea mays] 102 1e-19
gb|EMT09642.1| hypothetical protein F775_08996 [Aegilops tauschii] 100 6e-19
dbj|BAK06078.1| predicted protein [Hordeum vulgare subsp. vulgare] 100 8e-19
ref|NP_001052907.1| Os04g0446100 [Oryza sativa Japonica Group] g... 99 1e-18
gb|EAZ30874.1| hypothetical protein OsJ_14948 [Oryza sativa Japo... 99 1e-18
ref|XP_006653453.1| PREDICTED: pentatricopeptide repeat-containi... 99 2e-18
gb|EAY94290.1| hypothetical protein OsI_16061 [Oryza sativa Indi... 98 3e-18
emb|CAH67244.1| OSIGBa0140O07.12 [Oryza sativa Indica Group] 98 3e-18
ref|XP_002278014.2| PREDICTED: pentatricopeptide repeat-containi... 97 5e-18
ref|XP_006452806.1| hypothetical protein CICLE_v10007804mg [Citr... 96 9e-18
ref|XP_006297396.1| hypothetical protein CARUB_v10013421mg [Caps... 96 1e-17
ref|XP_006474728.1| PREDICTED: pentatricopeptide repeat-containi... 96 2e-17
dbj|BAH19478.1| AT2G06000 [Arabidopsis thaliana] 96 2e-17
ref|NP_178657.1| pentatricopeptide repeat-containing protein [Ar... 96 2e-17
ref|XP_006381622.1| pentatricopeptide repeat-containing family p... 94 6e-17
>ref|XP_003581270.1| PREDICTED: pentatricopeptide repeat-containing protein
At2g06000-like [Brachypodium distachyon]
Length = 560
Score = 107 bits (268), Expect = 3e-21
Identities = 52/88 (59%), Positives = 67/88 (76%)
Frame = +3
Query: 3 PDKYTYTILIIGHCMKGRMFEAIAIFQKMVNSGCTPDSITVDSLISCLLKAGIPHEINKI 182
PDKYTYTILIIGHCMKGR+ EAI F KMV++GC+PDSITV+S I CLLKAG+P E+++I
Sbjct: 473 PDKYTYTILIIGHCMKGRISEAITFFNKMVDTGCSPDSITVNSFIGCLLKAGMPSEVDRI 532
Query: 183 KSFASGRGSNFEIPNLQDIHSSIGKSMD 266
ASG S + Q++ S + +S+D
Sbjct: 533 MKIASGSTS-----SSQEVPSPVSQSID 555
>ref|XP_004978029.1| PREDICTED: pentatricopeptide repeat-containing protein
At2g06000-like [Setaria italica]
Length = 536
Score = 107 bits (266), Expect = 5e-21
Identities = 48/70 (68%), Positives = 59/70 (84%)
Frame = +3
Query: 3 PDKYTYTILIIGHCMKGRMFEAIAIFQKMVNSGCTPDSITVDSLISCLLKAGIPHEINKI 182
PDKYTYTILIIGHCMKGR+ EA+ +F KMV +GC PD+ITVDS ISCLLKAG+P+E+++I
Sbjct: 449 PDKYTYTILIIGHCMKGRISEAVTLFHKMVETGCHPDNITVDSFISCLLKAGMPNEVDRI 508
Query: 183 KSFASGRGSN 212
ASG S+
Sbjct: 509 MLIASGHASS 518
>tpg|DAA37606.1| TPA: hypothetical protein ZEAMMB73_100135 [Zea mays]
Length = 547
Score = 103 bits (257), Expect = 6e-20
Identities = 46/68 (67%), Positives = 58/68 (85%)
Frame = +3
Query: 3 PDKYTYTILIIGHCMKGRMFEAIAIFQKMVNSGCTPDSITVDSLISCLLKAGIPHEINKI 182
PDKYTYTILIIGHCMKGR+ EAI +F KMV +GC PD+ITV+S +SC+LKAG+P+E+++I
Sbjct: 460 PDKYTYTILIIGHCMKGRIPEAITLFHKMVEAGCRPDNITVNSFVSCVLKAGMPNEVDQI 519
Query: 183 KSFASGRG 206
ASG G
Sbjct: 520 MLIASGHG 527
>ref|XP_002447917.1| hypothetical protein SORBIDRAFT_06g017980 [Sorghum bicolor]
gi|241939100|gb|EES12245.1| hypothetical protein
SORBIDRAFT_06g017980 [Sorghum bicolor]
Length = 550
Score = 102 bits (255), Expect = 1e-19
Identities = 47/69 (68%), Positives = 57/69 (82%)
Frame = +3
Query: 3 PDKYTYTILIIGHCMKGRMFEAIAIFQKMVNSGCTPDSITVDSLISCLLKAGIPHEINKI 182
PDKYTYTILIIGHCMKGR+ EAI +F KMV +GC PD ITV+S ISC+LKAG+P+E+++I
Sbjct: 463 PDKYTYTILIIGHCMKGRIPEAITLFHKMVETGCRPDKITVNSFISCVLKAGMPNEVDQI 522
Query: 183 KSFASGRGS 209
ASG S
Sbjct: 523 MLIASGHAS 531
>gb|EOY30252.1| Pentatricopeptide repeat superfamily protein, putative [Theobroma
cacao]
Length = 592
Score = 102 bits (254), Expect = 1e-19
Identities = 47/65 (72%), Positives = 56/65 (86%)
Frame = +3
Query: 3 PDKYTYTILIIGHCMKGRMFEAIAIFQKMVNSGCTPDSITVDSLISCLLKAGIPHEINKI 182
PDK T+TILIIGHCMKGRMFEAI+IF KM++ GCTPD +TV+SLISCLLKAG+P E ++I
Sbjct: 502 PDKVTFTILIIGHCMKGRMFEAISIFNKMLSVGCTPDDVTVNSLISCLLKAGMPSEASRI 561
Query: 183 KSFAS 197
AS
Sbjct: 562 TKMAS 566
>gb|AFW58380.1| hypothetical protein ZEAMMB73_073366 [Zea mays]
Length = 414
Score = 102 bits (254), Expect = 1e-19
Identities = 45/69 (65%), Positives = 58/69 (84%)
Frame = +3
Query: 3 PDKYTYTILIIGHCMKGRMFEAIAIFQKMVNSGCTPDSITVDSLISCLLKAGIPHEINKI 182
PDKYTYTILIIGHCMKGR+ EA+ +F KMV +GC PD+IT++S ISC+LKAG+P+E+++I
Sbjct: 327 PDKYTYTILIIGHCMKGRIPEAVTLFHKMVETGCRPDNITINSFISCVLKAGMPNEVHQI 386
Query: 183 KSFASGRGS 209
ASG S
Sbjct: 387 MLIASGHAS 395
>gb|EMT09642.1| hypothetical protein F775_08996 [Aegilops tauschii]
Length = 400
Score = 100 bits (248), Expect = 6e-19
Identities = 46/70 (65%), Positives = 56/70 (80%)
Frame = +3
Query: 3 PDKYTYTILIIGHCMKGRMFEAIAIFQKMVNSGCTPDSITVDSLISCLLKAGIPHEINKI 182
PDKYTYTILIIGHCMKGR+ EAI F KMV +GC+PDSI V+S ISCLLK+G+P E++ I
Sbjct: 313 PDKYTYTILIIGHCMKGRIAEAITFFHKMVETGCSPDSIVVNSFISCLLKSGMPGEVDHI 372
Query: 183 KSFASGRGSN 212
A+G S+
Sbjct: 373 MRIAAGGASS 382
>dbj|BAK06078.1| predicted protein [Hordeum vulgare subsp. vulgare]
Length = 566
Score = 99.8 bits (247), Expect = 8e-19
Identities = 45/70 (64%), Positives = 56/70 (80%)
Frame = +3
Query: 3 PDKYTYTILIIGHCMKGRMFEAIAIFQKMVNSGCTPDSITVDSLISCLLKAGIPHEINKI 182
PDKYTYTILIIGHCMKGR+ EA+ F KMV +GC+PDSI V+S ISCLLK+G+P E++ I
Sbjct: 479 PDKYTYTILIIGHCMKGRIAEAVTFFHKMVETGCSPDSIVVNSFISCLLKSGMPGEVDHI 538
Query: 183 KSFASGRGSN 212
A+G S+
Sbjct: 539 MRIAAGGASS 548
>ref|NP_001052907.1| Os04g0446100 [Oryza sativa Japonica Group]
gi|38344550|emb|CAD40961.2| OSJNBa0027P08.18 [Oryza
sativa Japonica Group] gi|113564478|dbj|BAF14821.1|
Os04g0446100 [Oryza sativa Japonica Group]
Length = 583
Score = 99.0 bits (245), Expect = 1e-18
Identities = 47/88 (53%), Positives = 65/88 (73%)
Frame = +3
Query: 3 PDKYTYTILIIGHCMKGRMFEAIAIFQKMVNSGCTPDSITVDSLISCLLKAGIPHEINKI 182
PDKYTYTILIIG+CMK R+ EAI F +MV +GC+PDSITV+ ISCLLKAG+P+E++ +
Sbjct: 496 PDKYTYTILIIGYCMKSRISEAIMFFHEMVEAGCSPDSITVNCFISCLLKAGMPNEVDHV 555
Query: 183 KSFASGRGSNFEIPNLQDIHSSIGKSMD 266
ASG S ++Q++ S + + +D
Sbjct: 556 MRLASGGAS-----SIQEVPSPVRQRLD 578
>gb|EAZ30874.1| hypothetical protein OsJ_14948 [Oryza sativa Japonica Group]
Length = 414
Score = 99.0 bits (245), Expect = 1e-18
Identities = 47/88 (53%), Positives = 65/88 (73%)
Frame = +3
Query: 3 PDKYTYTILIIGHCMKGRMFEAIAIFQKMVNSGCTPDSITVDSLISCLLKAGIPHEINKI 182
PDKYTYTILIIG+CMK R+ EAI F +MV +GC+PDSITV+ ISCLLKAG+P+E++ +
Sbjct: 327 PDKYTYTILIIGYCMKSRISEAIMFFHEMVEAGCSPDSITVNCFISCLLKAGMPNEVDHV 386
Query: 183 KSFASGRGSNFEIPNLQDIHSSIGKSMD 266
ASG S ++Q++ S + + +D
Sbjct: 387 MRLASGGAS-----SIQEVPSPVRQRLD 409
>ref|XP_006653453.1| PREDICTED: pentatricopeptide repeat-containing protein
At2g06000-like [Oryza brachyantha]
Length = 516
Score = 98.6 bits (244), Expect = 2e-18
Identities = 46/88 (52%), Positives = 66/88 (75%)
Frame = +3
Query: 3 PDKYTYTILIIGHCMKGRMFEAIAIFQKMVNSGCTPDSITVDSLISCLLKAGIPHEINKI 182
PDKYTYTILIIG+CMK R+ EAI IF +MV +GC+PD+ITV+ ISCLLKAG+P+E++ +
Sbjct: 429 PDKYTYTILIIGYCMKSRISEAIMIFHQMVEAGCSPDNITVNCFISCLLKAGMPNEVDHV 488
Query: 183 KSFASGRGSNFEIPNLQDIHSSIGKSMD 266
ASG + ++Q++ S + + +D
Sbjct: 489 MRLASG-----GVSSIQEVPSPVRQRLD 511
>gb|EAY94290.1| hypothetical protein OsI_16061 [Oryza sativa Indica Group]
Length = 586
Score = 97.8 bits (242), Expect = 3e-18
Identities = 47/88 (53%), Positives = 64/88 (72%)
Frame = +3
Query: 3 PDKYTYTILIIGHCMKGRMFEAIAIFQKMVNSGCTPDSITVDSLISCLLKAGIPHEINKI 182
PDKYTYTILIIG+CMK R+ EAI F +MV +GC+PDSITV+ ISCLLKAG+P+E++ +
Sbjct: 499 PDKYTYTILIIGYCMKSRISEAIMFFHEMVEAGCSPDSITVNCFISCLLKAGMPNEVDHV 558
Query: 183 KSFASGRGSNFEIPNLQDIHSSIGKSMD 266
ASG S ++Q+ S + + +D
Sbjct: 559 MRLASGGAS-----SIQEFPSPVRQRLD 581
>emb|CAH67244.1| OSIGBa0140O07.12 [Oryza sativa Indica Group]
Length = 581
Score = 97.8 bits (242), Expect = 3e-18
Identities = 47/88 (53%), Positives = 64/88 (72%)
Frame = +3
Query: 3 PDKYTYTILIIGHCMKGRMFEAIAIFQKMVNSGCTPDSITVDSLISCLLKAGIPHEINKI 182
PDKYTYTILIIG+CMK R+ EAI F +MV +GC+PDSITV+ ISCLLKAG+P+E++ +
Sbjct: 494 PDKYTYTILIIGYCMKSRISEAIMFFHEMVEAGCSPDSITVNCFISCLLKAGMPNEVDHV 553
Query: 183 KSFASGRGSNFEIPNLQDIHSSIGKSMD 266
ASG S ++Q+ S + + +D
Sbjct: 554 MRLASGGAS-----SIQEFPSPVRQRLD 576
>ref|XP_002278014.2| PREDICTED: pentatricopeptide repeat-containing protein
At2g06000-like [Vitis vinifera]
Length = 641
Score = 97.1 bits (240), Expect = 5e-18
Identities = 45/65 (69%), Positives = 54/65 (83%)
Frame = +3
Query: 3 PDKYTYTILIIGHCMKGRMFEAIAIFQKMVNSGCTPDSITVDSLISCLLKAGIPHEINKI 182
PDK TYTILIIGHCMKGR+ EAI+IF +M+ +GC PDSIT+ SLISCLLKAG+P+E +I
Sbjct: 481 PDKITYTILIIGHCMKGRLSEAISIFNRMLGTGCAPDSITMTSLISCLLKAGMPNEAYRI 540
Query: 183 KSFAS 197
AS
Sbjct: 541 MQIAS 545
>ref|XP_006452806.1| hypothetical protein CICLE_v10007804mg [Citrus clementina]
gi|557556032|gb|ESR66046.1| hypothetical protein
CICLE_v10007804mg [Citrus clementina]
Length = 595
Score = 96.3 bits (238), Expect = 9e-18
Identities = 47/75 (62%), Positives = 57/75 (76%)
Frame = +3
Query: 3 PDKYTYTILIIGHCMKGRMFEAIAIFQKMVNSGCTPDSITVDSLISCLLKAGIPHEINKI 182
PDK T+TILIIGHCMKGRM EAI+IF KM+ GC PD ITV+SLISCLLK G+P+E +I
Sbjct: 505 PDKVTFTILIIGHCMKGRMVEAISIFNKMLRIGCAPDDITVNSLISCLLKGGMPNEAFRI 564
Query: 183 KSFASGRGSNFEIPN 227
AS N ++P+
Sbjct: 565 MQRAS-EDQNLQLPS 578
>ref|XP_006297396.1| hypothetical protein CARUB_v10013421mg [Capsella rubella]
gi|565479514|ref|XP_006297397.1| hypothetical protein
CARUB_v10013421mg [Capsella rubella]
gi|482566105|gb|EOA30294.1| hypothetical protein
CARUB_v10013421mg [Capsella rubella]
gi|482566106|gb|EOA30295.1| hypothetical protein
CARUB_v10013421mg [Capsella rubella]
Length = 535
Score = 95.9 bits (237), Expect = 1e-17
Identities = 47/83 (56%), Positives = 61/83 (73%)
Frame = +3
Query: 3 PDKYTYTILIIGHCMKGRMFEAIAIFQKMVNSGCTPDSITVDSLISCLLKAGIPHEINKI 182
PDK T+TILIIGHCMKGRMFEA++IF KMV GC+PD ITV+SL+SCLLKAG+ E +
Sbjct: 451 PDKITFTILIIGHCMKGRMFEAVSIFHKMVAIGCSPDKITVNSLLSCLLKAGMAEEAYHL 510
Query: 183 KSFASGRGSNFEIPNLQDIHSSI 251
A SN ++ L+ I +++
Sbjct: 511 NQIARKAQSN-DVAPLETIKANV 532
>ref|XP_006474728.1| PREDICTED: pentatricopeptide repeat-containing protein
At2g06000-like isoform X1 [Citrus sinensis]
gi|568841566|ref|XP_006474729.1| PREDICTED:
pentatricopeptide repeat-containing protein
At2g06000-like isoform X2 [Citrus sinensis]
Length = 595
Score = 95.5 bits (236), Expect = 2e-17
Identities = 47/75 (62%), Positives = 57/75 (76%)
Frame = +3
Query: 3 PDKYTYTILIIGHCMKGRMFEAIAIFQKMVNSGCTPDSITVDSLISCLLKAGIPHEINKI 182
PDK T+TILIIGHCMKGRM EAI+IF KM+ GC PD ITV+SLISCLLK G+P+E +I
Sbjct: 505 PDKVTFTILIIGHCMKGRMVEAISIFNKMLTIGCAPDDITVNSLISCLLKGGMPNEAFRI 564
Query: 183 KSFASGRGSNFEIPN 227
AS N ++P+
Sbjct: 565 MQRAS-EDLNLQLPS 578
>dbj|BAH19478.1| AT2G06000 [Arabidopsis thaliana]
Length = 536
Score = 95.5 bits (236), Expect = 2e-17
Identities = 46/74 (62%), Positives = 54/74 (72%)
Frame = +3
Query: 3 PDKYTYTILIIGHCMKGRMFEAIAIFQKMVNSGCTPDSITVDSLISCLLKAGIPHEINKI 182
PDK T+TILIIGHCMKGRMFEA++IF KMV GC+PD ITV SL+SCLLKAG+ E +
Sbjct: 450 PDKITFTILIIGHCMKGRMFEAVSIFHKMVAIGCSPDKITVSSLLSCLLKAGMAKEAYHL 509
Query: 183 KSFASGRGSNFEIP 224
A SN +P
Sbjct: 510 NQIARKGQSNNVVP 523
>ref|NP_178657.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
gi|42570711|ref|NP_973429.1| pentatricopeptide
repeat-containing protein [Arabidopsis thaliana]
gi|75216767|sp|Q9ZUE9.1|PP149_ARATH RecName:
Full=Pentatricopeptide repeat-containing protein
At2g06000 gi|4006835|gb|AAC95177.1| hypothetical protein
[Arabidopsis thaliana] gi|110736272|dbj|BAF00106.1|
hypothetical protein [Arabidopsis thaliana]
gi|330250896|gb|AEC05990.1| pentatricopeptide
repeat-containing protein [Arabidopsis thaliana]
gi|330250897|gb|AEC05991.1| pentatricopeptide
repeat-containing protein [Arabidopsis thaliana]
Length = 536
Score = 95.5 bits (236), Expect = 2e-17
Identities = 46/74 (62%), Positives = 54/74 (72%)
Frame = +3
Query: 3 PDKYTYTILIIGHCMKGRMFEAIAIFQKMVNSGCTPDSITVDSLISCLLKAGIPHEINKI 182
PDK T+TILIIGHCMKGRMFEA++IF KMV GC+PD ITV SL+SCLLKAG+ E +
Sbjct: 450 PDKITFTILIIGHCMKGRMFEAVSIFHKMVAIGCSPDKITVSSLLSCLLKAGMAKEAYHL 509
Query: 183 KSFASGRGSNFEIP 224
A SN +P
Sbjct: 510 NQIARKGQSNNVVP 523
>ref|XP_006381622.1| pentatricopeptide repeat-containing family protein [Populus
trichocarpa] gi|550336330|gb|ERP59419.1|
pentatricopeptide repeat-containing family protein
[Populus trichocarpa]
Length = 511
Score = 93.6 bits (231), Expect = 6e-17
Identities = 43/64 (67%), Positives = 54/64 (84%)
Frame = +3
Query: 3 PDKYTYTILIIGHCMKGRMFEAIAIFQKMVNSGCTPDSITVDSLISCLLKAGIPHEINKI 182
PDK T+TILIIGHC+KGRMFEAI IF +M+ + C PD+ITV+SLISCLLKAG+P+E +I
Sbjct: 421 PDKVTFTILIIGHCVKGRMFEAINIFNRMLATRCAPDNITVNSLISCLLKAGMPNEAYRI 480
Query: 183 KSFA 194
+ A
Sbjct: 481 RKMA 484