BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Zingiber24_contig00015242
         (895 letters)

Database: ./nr 
           37,332,560 sequences; 13,225,080,153 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

ref|XP_002468490.1| hypothetical protein SORBIDRAFT_01g046770 [S...   255   2e-65
ref|XP_004985662.1| PREDICTED: uncharacterized protein LOC101780...   254   2e-65
ref|XP_004140075.1| PREDICTED: uncharacterized RNA pseudouridine...   253   7e-65
ref|XP_004496237.1| PREDICTED: uncharacterized RNA pseudouridine...   252   1e-64
ref|NP_001048994.1| Os03g0152700 [Oryza sativa Japonica Group] g...   252   1e-64
gb|ESW15747.1| hypothetical protein PHAVU_007G098900g [Phaseolus...   252   1e-64
ref|XP_003558788.1| PREDICTED: ribosomal large subunit pseudouri...   251   3e-64
gb|EOY18776.1| Pseudouridine synthase family protein isoform 4 [...   251   3e-64
gb|EOY18775.1| Pseudouridine synthase family protein isoform 3 [...   251   3e-64
gb|EOY18774.1| Pseudouridine synthase family protein isoform 2, ...   251   3e-64
ref|XP_006848911.1| hypothetical protein AMTR_s00161p00064200 [A...   250   4e-64
ref|XP_006589405.1| PREDICTED: uncharacterized protein LOC100808...   250   6e-64
ref|XP_006589404.1| PREDICTED: uncharacterized protein LOC100808...   250   6e-64
tpg|DAA43427.1| TPA: ribosomal large subunit pseudouridine synth...   250   6e-64
ref|XP_002270186.1| PREDICTED: uncharacterized RNA pseudouridine...   249   1e-63
gb|AFK43008.1| unknown [Medicago truncatula]                          249   1e-63
dbj|BAJ86830.1| predicted protein [Hordeum vulgare subsp. vulgar...   249   1e-63
gb|EMJ19261.1| hypothetical protein PRUPE_ppa006826mg [Prunus pe...   248   2e-63
ref|NP_001152020.1| LOC100285657 [Zea mays] gi|195651911|gb|ACG4...   248   2e-63
ref|XP_006411139.1| hypothetical protein EUTSA_v10016747mg [Eutr...   247   4e-63

>ref|XP_002468490.1| hypothetical protein SORBIDRAFT_01g046770 [Sorghum bicolor]
           gi|241922344|gb|EER95488.1| hypothetical protein
           SORBIDRAFT_01g046770 [Sorghum bicolor]
          Length = 407

 Score =  255 bits (651), Expect = 2e-65
 Identities = 139/246 (56%), Positives = 171/246 (69%), Gaps = 16/246 (6%)
 Frame = +1

Query: 205 SFGASPSPGVNEAEPRTLVPDTSPTGSSNAPIPMLIPWIVRGEDGQFTIQSSPPARFLQX 384
           S  ASP   +  AEP       +P+  + +  P L+PWIVRGEDG+  + +SPP   LQ 
Sbjct: 39  STSASPDFNITFAEP-------APSKKAPSAQP-LVPWIVRGEDGKPRLSTSPPPDVLQA 90

Query: 385 XXXXXXXXXXXXXXXXXXSP-GAMTSIVTSAS--------------PPKYSKAARRFYNQ 519
                              P GA+ +   +A+              PPK+SKAARRFYN+
Sbjct: 91  IALAEAEAKKAAKKETLKGPKGAVAAAAAAAASNASVKARKAAPTAPPKFSKAARRFYNE 150

Query: 520 HIKQKS-QRLSKVLAASGVASRRNCEEIIFEGKVTVNGSVCTSPQTRVDIAKDSIYVNGN 696
           +IK++  QRL+KVLAA+GVASRR  EE+IF+GKVTVNGSVCTSPQT+VDI+KDSIYVNGN
Sbjct: 151 NIKEREPQRLAKVLAAAGVASRRTSEELIFQGKVTVNGSVCTSPQTKVDISKDSIYVNGN 210

Query: 697 RLSKKLPPKLYFALNKPKGYICSSADDSKSVISLFDDFLKKWIKSNPGIPKPRLFTVGRL 876
           R+SKKLPPKLYFA+NKPKGYICS  +DSKSV+SLF+D+LK W K  PG+PKPRLFTVGRL
Sbjct: 211 RISKKLPPKLYFAVNKPKGYICSCGEDSKSVVSLFNDYLKGWNKIQPGLPKPRLFTVGRL 270

Query: 877 DVATTG 894
           DVAT+G
Sbjct: 271 DVATSG 276


>ref|XP_004985662.1| PREDICTED: uncharacterized protein LOC101780537 [Setaria italica]
          Length = 415

 Score =  254 bits (650), Expect = 2e-65
 Identities = 138/246 (56%), Positives = 169/246 (68%), Gaps = 16/246 (6%)
 Frame = +1

Query: 205 SFGASPSPGVNEAEPRTLVPDTSPTGSSNAPIPMLIPWIVRGEDGQFTIQSSPPARFLQ- 381
           S  ++P   +  AEP      +SP+ S+      L+PWIVRGEDG+  + +SPP   LQ 
Sbjct: 43  STSSAPDFNITFAEPAPAKKASSPSPSAQP----LVPWIVRGEDGKPRLSTSPPPEVLQA 98

Query: 382 XXXXXXXXXXXXXXXXXXXSPGAMTSIVTS--------------ASPPKYSKAARRFYNQ 519
                                GA+ +   +              A+PPK+SKAARRFYN+
Sbjct: 99  IALAEAEAKKAAKKESLKGQKGAVAAAAAASSASVKAKERKAAPAAPPKFSKAARRFYNE 158

Query: 520 HIK-QKSQRLSKVLAASGVASRRNCEEIIFEGKVTVNGSVCTSPQTRVDIAKDSIYVNGN 696
           +IK  + QRL+KVLAA+GVASRR  EE+IF+GKVTVNGSVCTSPQT+VDIAKDSIYVNGN
Sbjct: 159 NIKDHEPQRLAKVLAAAGVASRRTSEELIFQGKVTVNGSVCTSPQTKVDIAKDSIYVNGN 218

Query: 697 RLSKKLPPKLYFALNKPKGYICSSADDSKSVISLFDDFLKKWIKSNPGIPKPRLFTVGRL 876
           R+SKKLPPKLYFA+NKPKGYICS  ++SKSV+SLF+D+LK W K  PG+PKPRLFTVGRL
Sbjct: 219 RISKKLPPKLYFAVNKPKGYICSCGEESKSVVSLFNDYLKGWNKIQPGLPKPRLFTVGRL 278

Query: 877 DVATTG 894
           DVATTG
Sbjct: 279 DVATTG 284


>ref|XP_004140075.1| PREDICTED: uncharacterized RNA pseudouridine synthase aq_1464-like
           [Cucumis sativus] gi|449490423|ref|XP_004158601.1|
           PREDICTED: uncharacterized RNA pseudouridine synthase
           aq_1464-like [Cucumis sativus]
          Length = 398

 Score =  253 bits (646), Expect = 7e-65
 Identities = 141/235 (60%), Positives = 164/235 (69%), Gaps = 1/235 (0%)
 Frame = +1

Query: 193 EFNISFGASPSPGVNEAEPRTLVPDTSPTGSSNAPIPMLIPWIVRGEDGQFTIQSSPPAR 372
           EFNI+F A P P     +P++ V D       N+   + IPWIVRGEDG   +QS PP R
Sbjct: 49  EFNITF-APPKP-----KPKSEVEDPFQFIDRNSGGQLFIPWIVRGEDGNLKLQSHPPTR 102

Query: 373 FLQXXXXXXXXXXXXXXXXXXXSPGAMTSIVTSASPPKYSKAARRFYNQHIKQKSQRLSK 552
           FL                    S G   +      PPK+SKAARRFYN++I++ SQRLSK
Sbjct: 103 FLHSVSEDETKPKKKKV-----SAGKPIT-----EPPKHSKAARRFYNENIRESSQRLSK 152

Query: 553 VLAASGVASRRNCEEIIFEGKVTVNGSVCTSPQTRVDIAKDSIYVNGNRLSKKLPPKLYF 732
           VLAA+GVASRR+ EE+IF G+VTVNGSVC +PQTRVD A+D IYVNGNRL KKLPPK+Y 
Sbjct: 153 VLAAAGVASRRSSEELIFGGRVTVNGSVCNTPQTRVDPARDIIYVNGNRLPKKLPPKVYL 212

Query: 733 ALNKPKGYICSSA-DDSKSVISLFDDFLKKWIKSNPGIPKPRLFTVGRLDVATTG 894
           ALNKPKGYICSS   +SKSVISLFDD+LK W K+ PG PKPRLFTVGRLDVATTG
Sbjct: 213 ALNKPKGYICSSGKKESKSVISLFDDYLKSWDKTYPGQPKPRLFTVGRLDVATTG 267


>ref|XP_004496237.1| PREDICTED: uncharacterized RNA pseudouridine synthase aq_1464-like
           [Cicer arietinum]
          Length = 410

 Score =  252 bits (644), Expect = 1e-64
 Identities = 134/237 (56%), Positives = 162/237 (68%), Gaps = 3/237 (1%)
 Frame = +1

Query: 193 EFNISFGASPSPGVNEAEPRTLVPDTSPTGSSNAPIPMLIPWIVRGEDGQFTIQSSPPAR 372
           +FNISF  S      + EP+T  P+  P  +      ++IPWIVRGEDG F + S PP  
Sbjct: 40  KFNISFSPSKPKPNPKPEPQTESPNQFPDDNEGQ---LIIPWIVRGEDGNFKLLSEPPPS 96

Query: 373 FLQXXXXXXXXXXXXXXXXXXXSP--GAMTSIVTSASPPKYSKAARRFYNQHIKQKSQRL 546
           FL+                   +       + V + +PP+YSKAARRFYN++ K    RL
Sbjct: 97  FLKAMANDKTGTKKSDKNQTTKNKKKSENETKVRATAPPQYSKAARRFYNENFKDSGTRL 156

Query: 547 SKVLAASGVASRRNCEEIIFEGKVTVNGSVCTSPQTRVDIAKDSIYVNGNRLSKKLPPKL 726
           SKVLAASGVASRR+CE++IFEGKVTVNGSVC +PQTRVD AKD IYVNG+RL K+ P K+
Sbjct: 157 SKVLAASGVASRRSCEDLIFEGKVTVNGSVCNTPQTRVDPAKDVIYVNGSRLPKRQPHKV 216

Query: 727 YFALNKPKGYICSSAD-DSKSVISLFDDFLKKWIKSNPGIPKPRLFTVGRLDVATTG 894
           Y ALNKPKGYICSS + +SKSV+SLFDDFL  W K +PG+P PRLFTVGRLDVATTG
Sbjct: 217 YLALNKPKGYICSSGEKESKSVLSLFDDFLSSWDKKHPGVPMPRLFTVGRLDVATTG 273


>ref|NP_001048994.1| Os03g0152700 [Oryza sativa Japonica Group]
           gi|108706231|gb|ABF94026.1| RNA pseudouridylate synthase
           family protein, expressed [Oryza sativa Japonica Group]
           gi|113547465|dbj|BAF10908.1| Os03g0152700 [Oryza sativa
           Japonica Group]
          Length = 415

 Score =  252 bits (644), Expect = 1e-64
 Identities = 136/245 (55%), Positives = 169/245 (68%), Gaps = 15/245 (6%)
 Frame = +1

Query: 205 SFGASPSPGVNEAEPRTLVPDTSPTGSSNAP-IPMLIPWIVRGEDGQFTIQSSPPARFLQ 381
           S  ++P   +  AEP    P + P  SS AP    ++PWIVRGEDG+ +++++PP   LQ
Sbjct: 48  STSSAPDFNITFAEPTAPAP-SKPKPSSPAPSAEQVVPWIVRGEDGKPSMRTAPPPDVLQ 106

Query: 382 XXXXXXXXXXXXXXXXXXXSPGAMT-------------SIVTSASPPKYSKAARRFYNQH 522
                                GA                   + +PPK+SKAARRFYN++
Sbjct: 107 AIALAEAEAKKAKKDPRRSHKGAAALATPVANAKVRERKAAPATAPPKFSKAARRFYNEN 166

Query: 523 IKQ-KSQRLSKVLAASGVASRRNCEEIIFEGKVTVNGSVCTSPQTRVDIAKDSIYVNGNR 699
           IK+ + QRL+KVLAA+GVASRR CEE+IF+GKVTVNGSVCT+PQT+VDI+KDSIYVNGNR
Sbjct: 167 IKEHEPQRLAKVLAAAGVASRRTCEELIFQGKVTVNGSVCTAPQTKVDISKDSIYVNGNR 226

Query: 700 LSKKLPPKLYFALNKPKGYICSSADDSKSVISLFDDFLKKWIKSNPGIPKPRLFTVGRLD 879
           +SKKLPPKLYFA+NKPKGYIC S  + KS+ISLFDD+LK W K  PG+PKPRLFTVGRLD
Sbjct: 227 ISKKLPPKLYFAVNKPKGYIC-SCGEPKSIISLFDDYLKGWNKIQPGVPKPRLFTVGRLD 285

Query: 880 VATTG 894
           VAT+G
Sbjct: 286 VATSG 290


>gb|ESW15747.1| hypothetical protein PHAVU_007G098900g [Phaseolus vulgaris]
          Length = 403

 Score =  252 bits (643), Expect = 1e-64
 Identities = 141/236 (59%), Positives = 162/236 (68%), Gaps = 3/236 (1%)
 Frame = +1

Query: 196 FNISFGASPSPGVNEAEPRTLVPDTSPTGSSNAPIPMLIPWIVRGEDGQFTIQSSPPARF 375
           FNISF A P P   + +P  L P   P  S+    P+LIPWIVRGEDG   +QS PP   
Sbjct: 43  FNISF-APPKP---KPKPNNLHPH--PDLSNEPDGPLLIPWIVRGEDGNLKLQSEPPPSL 96

Query: 376 LQXXXXXXXXXXXXXXXXXXXSPGAMT-SIVTSASPPKYSKAARRFYNQHIKQKS-QRLS 549
           L                    +        + + +PP++SKAARRFYNQ+IK+ S  RLS
Sbjct: 97  LNAIATAQTGTRKDSNQKTKTTAATTKPQKIRATAPPQHSKAARRFYNQNIKESSGARLS 156

Query: 550 KVLAASGVASRRNCEEIIFEGKVTVNGSVCTSPQTRVDIAKDSIYVNGNRLSKKLPPKLY 729
           KVLAASGVASRR+CEE+IFEGKVTVNGSVC +PQTRVD AKD IYVNGNRL K+ P K+Y
Sbjct: 157 KVLAASGVASRRSCEELIFEGKVTVNGSVCNTPQTRVDPAKDVIYVNGNRLPKRQPQKVY 216

Query: 730 FALNKPKGYICSSAD-DSKSVISLFDDFLKKWIKSNPGIPKPRLFTVGRLDVATTG 894
            ALNKPKGYICSS + +SKSVISLFDDFL  W K  PG+P PRLFTVGRLDVATTG
Sbjct: 217 LALNKPKGYICSSGENESKSVISLFDDFLNTWGKKRPGVPTPRLFTVGRLDVATTG 272


>ref|XP_003558788.1| PREDICTED: ribosomal large subunit pseudouridine synthase B-like
           [Brachypodium distachyon]
          Length = 405

 Score =  251 bits (641), Expect = 3e-64
 Identities = 152/301 (50%), Positives = 183/301 (60%), Gaps = 19/301 (6%)
 Frame = +1

Query: 49  SMAGAAMAFAVFHP---RPSLLCTGPLLPFQAXXXXXXXXXXXXXXXXXXXEFNISFGAS 219
           ++A AA A    HP   RP+ +   P L  +A                   +FNI+F A 
Sbjct: 2   ALAAAAAAVTSIHPFLSRPTRVLRLPPLLLRASSSTSTS------------DFNITF-AE 48

Query: 220 PSPGVNEAEPRTLVPDTSPTGSSNAPIPMLIPWIVRGEDGQFTIQSSPPARFLQXXXXXX 399
           P+P    + P          G S  P   L+PWI RG DG+  + ++PP   LQ      
Sbjct: 49  PAPSKKASGP----------GPSAQP---LVPWIARGADGKPCLHTTPPPDVLQAVAAAE 95

Query: 400 XXXXXXXXXXXXXSPGAMTSIVTSA---------------SPPKYSKAARRFYNQHIKQ- 531
                          GA    VT A                PPK+SKAARRFYN++I++ 
Sbjct: 96  AEAKRAKRDASRSQKGA--GAVTDAPVASVKAKEKKAAPTGPPKFSKAARRFYNENIREH 153

Query: 532 KSQRLSKVLAASGVASRRNCEEIIFEGKVTVNGSVCTSPQTRVDIAKDSIYVNGNRLSKK 711
           + QRL+KVLAA+GVASRR  EE+IF+GKVTVNGSVCTSPQT+VDI+KDSIYVNGNR+SKK
Sbjct: 154 EPQRLAKVLAAAGVASRRTSEELIFQGKVTVNGSVCTSPQTKVDISKDSIYVNGNRISKK 213

Query: 712 LPPKLYFALNKPKGYICSSADDSKSVISLFDDFLKKWIKSNPGIPKPRLFTVGRLDVATT 891
           LPPKLYFA+NKPKGYICSS ++SKSVISL DD+LK W K  PGIPKPRLFTVGRLDVATT
Sbjct: 214 LPPKLYFAVNKPKGYICSSGEESKSVISLLDDYLKGWNKIQPGIPKPRLFTVGRLDVATT 273

Query: 892 G 894
           G
Sbjct: 274 G 274


>gb|EOY18776.1| Pseudouridine synthase family protein isoform 4 [Theobroma cacao]
          Length = 350

 Score =  251 bits (640), Expect = 3e-64
 Identities = 134/240 (55%), Positives = 163/240 (67%), Gaps = 6/240 (2%)
 Frame = +1

Query: 193 EFNISFGASPSPGVNEAEPRTLVPDTSPTGSSNAPIP----MLIPWIVRGEDGQFTIQSS 360
           +FNI+F A P+P +    P  L  D     S + P+P    + IPWIVRGEDG   +Q+ 
Sbjct: 78  QFNITF-APPNPKLKPRTPPNLKNDVVLDDSESPPLPSNGQLFIPWIVRGEDGNLKLQAH 136

Query: 361 PPARFLQXXXXXXXXXXXXXXXXXXXSPGAMTSIVT-SASPPKYSKAARRFYNQHIKQKS 537
           PPAR +                        ++++   S  PPK SKAARRFYN++  +  
Sbjct: 137 PPARLIHALADAKTQKPKKKVDKAVKKKKEISAVGNASVEPPKLSKAARRFYNENFTEPP 196

Query: 538 QRLSKVLAASGVASRRNCEEIIFEGKVTVNGSVCTSPQTRVDIAKDSIYVNGNRLSKKLP 717
           QRLSKVLAA+GVASRR  EE+IF+GKVTVNGSVC +PQTRVD AKD IYVNG+RL KKLP
Sbjct: 197 QRLSKVLAAAGVASRRGSEELIFDGKVTVNGSVCNAPQTRVDPAKDIIYVNGSRLPKKLP 256

Query: 718 PKLYFALNKPKGYICSSAD-DSKSVISLFDDFLKKWIKSNPGIPKPRLFTVGRLDVATTG 894
           PK+Y ALNKPKGYICSS + + KSV+ LF+D+LK+W K N G PKPRLFTVGRLDVATTG
Sbjct: 257 PKIYLALNKPKGYICSSGEKEFKSVLDLFEDYLKRWDKMNRGSPKPRLFTVGRLDVATTG 316


>gb|EOY18775.1| Pseudouridine synthase family protein isoform 3 [Theobroma cacao]
          Length = 374

 Score =  251 bits (640), Expect = 3e-64
 Identities = 134/240 (55%), Positives = 163/240 (67%), Gaps = 6/240 (2%)
 Frame = +1

Query: 193 EFNISFGASPSPGVNEAEPRTLVPDTSPTGSSNAPIP----MLIPWIVRGEDGQFTIQSS 360
           +FNI+F A P+P +    P  L  D     S + P+P    + IPWIVRGEDG   +Q+ 
Sbjct: 78  QFNITF-APPNPKLKPRTPPNLKNDVVLDDSESPPLPSNGQLFIPWIVRGEDGNLKLQAH 136

Query: 361 PPARFLQXXXXXXXXXXXXXXXXXXXSPGAMTSIVT-SASPPKYSKAARRFYNQHIKQKS 537
           PPAR +                        ++++   S  PPK SKAARRFYN++  +  
Sbjct: 137 PPARLIHALADAKTQKPKKKVDKAVKKKKEISAVGNASVEPPKLSKAARRFYNENFTEPP 196

Query: 538 QRLSKVLAASGVASRRNCEEIIFEGKVTVNGSVCTSPQTRVDIAKDSIYVNGNRLSKKLP 717
           QRLSKVLAA+GVASRR  EE+IF+GKVTVNGSVC +PQTRVD AKD IYVNG+RL KKLP
Sbjct: 197 QRLSKVLAAAGVASRRGSEELIFDGKVTVNGSVCNAPQTRVDPAKDIIYVNGSRLPKKLP 256

Query: 718 PKLYFALNKPKGYICSSAD-DSKSVISLFDDFLKKWIKSNPGIPKPRLFTVGRLDVATTG 894
           PK+Y ALNKPKGYICSS + + KSV+ LF+D+LK+W K N G PKPRLFTVGRLDVATTG
Sbjct: 257 PKIYLALNKPKGYICSSGEKEFKSVLDLFEDYLKRWDKMNRGSPKPRLFTVGRLDVATTG 316


>gb|EOY18774.1| Pseudouridine synthase family protein isoform 2, partial [Theobroma
           cacao]
          Length = 398

 Score =  251 bits (640), Expect = 3e-64
 Identities = 134/240 (55%), Positives = 163/240 (67%), Gaps = 6/240 (2%)
 Frame = +1

Query: 193 EFNISFGASPSPGVNEAEPRTLVPDTSPTGSSNAPIP----MLIPWIVRGEDGQFTIQSS 360
           +FNI+F A P+P +    P  L  D     S + P+P    + IPWIVRGEDG   +Q+ 
Sbjct: 29  QFNITF-APPNPKLKPRTPPNLKNDVVLDDSESPPLPSNGQLFIPWIVRGEDGNLKLQAH 87

Query: 361 PPARFLQXXXXXXXXXXXXXXXXXXXSPGAMTSIVT-SASPPKYSKAARRFYNQHIKQKS 537
           PPAR +                        ++++   S  PPK SKAARRFYN++  +  
Sbjct: 88  PPARLIHALADAKTQKPKKKVDKAVKKKKEISAVGNASVEPPKLSKAARRFYNENFTEPP 147

Query: 538 QRLSKVLAASGVASRRNCEEIIFEGKVTVNGSVCTSPQTRVDIAKDSIYVNGNRLSKKLP 717
           QRLSKVLAA+GVASRR  EE+IF+GKVTVNGSVC +PQTRVD AKD IYVNG+RL KKLP
Sbjct: 148 QRLSKVLAAAGVASRRGSEELIFDGKVTVNGSVCNAPQTRVDPAKDIIYVNGSRLPKKLP 207

Query: 718 PKLYFALNKPKGYICSSAD-DSKSVISLFDDFLKKWIKSNPGIPKPRLFTVGRLDVATTG 894
           PK+Y ALNKPKGYICSS + + KSV+ LF+D+LK+W K N G PKPRLFTVGRLDVATTG
Sbjct: 208 PKIYLALNKPKGYICSSGEKEFKSVLDLFEDYLKRWDKMNRGSPKPRLFTVGRLDVATTG 267


>ref|XP_006848911.1| hypothetical protein AMTR_s00161p00064200 [Amborella trichopoda]
           gi|548852364|gb|ERN10492.1| hypothetical protein
           AMTR_s00161p00064200 [Amborella trichopoda]
          Length = 403

 Score =  250 bits (639), Expect = 4e-64
 Identities = 136/239 (56%), Positives = 167/239 (69%), Gaps = 5/239 (2%)
 Frame = +1

Query: 193 EFNISFGA----SPSPGVNEAEPRTLVPDTSPTGSSNAPIPMLIPWIVRGEDGQFTIQSS 360
           +FNI+FGA    +PSP + E +  + +        S  P P+ IPWIV+ E+G   IQS+
Sbjct: 56  QFNITFGARKKENPSPEMGEQDSSSSIKAPQKELPSQ-PAPLFIPWIVKDENGNLKIQST 114

Query: 361 PPARFLQXXXXXXXXXXXXXXXXXXXSPGAMTSIVTSASPPKYSKAARRFYNQHIKQKSQ 540
           PPA  L                      G++++       PK+SKAARRFYNQ+ ++  Q
Sbjct: 115 PPAHILSAMAEASTAKKTKKKKEGGSKSGSLSA------EPKHSKAARRFYNQNFREP-Q 167

Query: 541 RLSKVLAASGVASRRNCEEIIFEGKVTVNGSVCTSPQTRVDIAKDSIYVNGNRLSKKLPP 720
           RLSKVLA++GVASRR+ EE+IF+GKVTVNGSVC  PQTRVD  KD IYVNG+RL+KKLPP
Sbjct: 168 RLSKVLASAGVASRRSSEELIFDGKVTVNGSVCNVPQTRVDPIKDVIYVNGSRLAKKLPP 227

Query: 721 KLYFALNKPKGYICSSAD-DSKSVISLFDDFLKKWIKSNPGIPKPRLFTVGRLDVATTG 894
           KLYFALNKPKGYICSS++ +SKSV+ LFDD+ K W K NPGIPKPRLFTVGRLDVATTG
Sbjct: 228 KLYFALNKPKGYICSSSEKESKSVLMLFDDYWKSWNKINPGIPKPRLFTVGRLDVATTG 286


>ref|XP_006589405.1| PREDICTED: uncharacterized protein LOC100808046 isoform X2 [Glycine
           max]
          Length = 380

 Score =  250 bits (638), Expect = 6e-64
 Identities = 138/240 (57%), Positives = 161/240 (67%), Gaps = 6/240 (2%)
 Frame = +1

Query: 193 EFNISFGASPSPGVNEAEPRTLVPDTSPTGSSNAPIPMLIPWIVRGEDGQFTIQSSPPAR 372
           +FNISF A P P           P   P  S+    P+LIPWIVRGEDG   +QS PP  
Sbjct: 40  KFNISF-APPKPK----------PKPEPDASNEPDGPLLIPWIVRGEDGNLRLQSEPPPS 88

Query: 373 FLQXXXXXXXXXXXXXXXXXXXSPGAMTSI----VTSASPPKYSKAARRFYNQHIKQKSQ 540
            L                    +  A  +       S +PP++SKAARRFYNQ+IK+ S 
Sbjct: 89  LLNAIATAQTGTKKDNKQTKTTAATATNTTKPQKARSTAPPQHSKAARRFYNQNIKESSA 148

Query: 541 -RLSKVLAASGVASRRNCEEIIFEGKVTVNGSVCTSPQTRVDIAKDSIYVNGNRLSKKLP 717
            RLSKVLAASGVASRR+CEE+IFEGKVTVNG+VC +PQT+VD AKD IYVNGNRL K+ P
Sbjct: 149 ARLSKVLAASGVASRRSCEELIFEGKVTVNGTVCNTPQTKVDPAKDVIYVNGNRLPKRQP 208

Query: 718 PKLYFALNKPKGYICSSAD-DSKSVISLFDDFLKKWIKSNPGIPKPRLFTVGRLDVATTG 894
            K+Y ALNKPKGYICSS + +SKSVISLFDD+L  W K +PG+P PRLFTVGRLDVATTG
Sbjct: 209 QKVYLALNKPKGYICSSGENESKSVISLFDDYLNSWGKKHPGVPTPRLFTVGRLDVATTG 268


>ref|XP_006589404.1| PREDICTED: uncharacterized protein LOC100808046 isoform X1 [Glycine
           max]
          Length = 389

 Score =  250 bits (638), Expect = 6e-64
 Identities = 138/240 (57%), Positives = 161/240 (67%), Gaps = 6/240 (2%)
 Frame = +1

Query: 193 EFNISFGASPSPGVNEAEPRTLVPDTSPTGSSNAPIPMLIPWIVRGEDGQFTIQSSPPAR 372
           +FNISF A P P           P   P  S+    P+LIPWIVRGEDG   +QS PP  
Sbjct: 40  KFNISF-APPKPK----------PKPEPDASNEPDGPLLIPWIVRGEDGNLRLQSEPPPS 88

Query: 373 FLQXXXXXXXXXXXXXXXXXXXSPGAMTSI----VTSASPPKYSKAARRFYNQHIKQKSQ 540
            L                    +  A  +       S +PP++SKAARRFYNQ+IK+ S 
Sbjct: 89  LLNAIATAQTGTKKDNKQTKTTAATATNTTKPQKARSTAPPQHSKAARRFYNQNIKESSA 148

Query: 541 -RLSKVLAASGVASRRNCEEIIFEGKVTVNGSVCTSPQTRVDIAKDSIYVNGNRLSKKLP 717
            RLSKVLAASGVASRR+CEE+IFEGKVTVNG+VC +PQT+VD AKD IYVNGNRL K+ P
Sbjct: 149 ARLSKVLAASGVASRRSCEELIFEGKVTVNGTVCNTPQTKVDPAKDVIYVNGNRLPKRQP 208

Query: 718 PKLYFALNKPKGYICSSAD-DSKSVISLFDDFLKKWIKSNPGIPKPRLFTVGRLDVATTG 894
            K+Y ALNKPKGYICSS + +SKSVISLFDD+L  W K +PG+P PRLFTVGRLDVATTG
Sbjct: 209 QKVYLALNKPKGYICSSGENESKSVISLFDDYLNSWGKKHPGVPTPRLFTVGRLDVATTG 268


>tpg|DAA43427.1| TPA: ribosomal large subunit pseudouridine synthase B, partial [Zea
           mays]
          Length = 350

 Score =  250 bits (638), Expect = 6e-64
 Identities = 137/247 (55%), Positives = 169/247 (68%), Gaps = 17/247 (6%)
 Frame = +1

Query: 205 SFGASPSPGVNEAEPRTLVPDTSPTGSSNAPIPMLIPWIVRGEDGQFTIQSSPPARFLQX 384
           S  ASP   +  AEP       +P+  + +  P L+PWIVRGEDG+  + +SPP   +Q 
Sbjct: 37  STSASPDFNITFAEP-------APSKKAPSAQP-LVPWIVRGEDGKPRLSTSPPPDVIQA 88

Query: 385 XXXXXXXXXXXXXXXXXXSP-GAMTSIVTSAS---------------PPKYSKAARRFYN 516
                                GA+ +   +AS               PPK+SKAARRFYN
Sbjct: 89  IALAEAEAKKAAKKETLKGQNGAVAAAAAAASNASVKGKERKPAPTVPPKFSKAARRFYN 148

Query: 517 QHIKQKS-QRLSKVLAASGVASRRNCEEIIFEGKVTVNGSVCTSPQTRVDIAKDSIYVNG 693
           ++IK++  QRL+KVLAA+GVASRR  EE+IF+GKVTVNGSVCTSPQT+VDI+KDSIYVNG
Sbjct: 149 ENIKEREPQRLAKVLAAAGVASRRTSEELIFQGKVTVNGSVCTSPQTKVDISKDSIYVNG 208

Query: 694 NRLSKKLPPKLYFALNKPKGYICSSADDSKSVISLFDDFLKKWIKSNPGIPKPRLFTVGR 873
           NR+SKKLPPKLYFA+NKPKGYICS  ++SKSV+SLF+D+LK W K  PG+PKPRLFTVGR
Sbjct: 209 NRISKKLPPKLYFAVNKPKGYICSCGEESKSVVSLFNDYLKGWNKIQPGLPKPRLFTVGR 268

Query: 874 LDVATTG 894
           LDVAT G
Sbjct: 269 LDVATAG 275


>ref|XP_002270186.1| PREDICTED: uncharacterized RNA pseudouridine synthase aq_1464
           isoform 1 [Vitis vinifera]
          Length = 393

 Score =  249 bits (636), Expect = 1e-63
 Identities = 144/285 (50%), Positives = 176/285 (61%), Gaps = 2/285 (0%)
 Frame = +1

Query: 46  SSMAGAAMAFAVFH-PRPSLLCTGPLLPFQAXXXXXXXXXXXXXXXXXXXEFNISFGASP 222
           +++A A+ AF+ FH  RPSL         +                    EFNISF    
Sbjct: 10  AAVAAASAAFSSFHLSRPSLA--------RRHFRTIPVRSSISPPSTTSAEFNISF---- 57

Query: 223 SPGVNEAEPRTLVPDTSPTGSSNAPIPMLIPWIVRGEDGQFTIQSSPPARFLQXXXXXXX 402
           +P     +P++                +LIPWIVR E+G   +QS+PP R+LQ       
Sbjct: 58  APKSKNPKPQSET--------------LLIPWIVRDENGNLRVQSTPPERYLQDMAKAKA 103

Query: 403 XXXXXXXXXXXXSPGAMTSIVTSASPPKYSKAARRFYNQHIKQKSQRLSKVLAASGVASR 582
                       +  A+      A  PKYSKAARRFYN++ +   QRLSKVLAA+GVASR
Sbjct: 104 LSAKKKKKKEESTARAV------AVEPKYSKAARRFYNENFRDPPQRLSKVLAAAGVASR 157

Query: 583 RNCEEIIFEGKVTVNGSVCTSPQTRVDIAKDSIYVNGNRLSKKLPPKLYFALNKPKGYIC 762
           RN EE+IFEG+VTVNGSVC +PQTRVD A+D IYVNGNRL KKLPPK+Y ALNKPKGYIC
Sbjct: 158 RNSEELIFEGRVTVNGSVCNTPQTRVDPARDMIYVNGNRLPKKLPPKVYLALNKPKGYIC 217

Query: 763 SSAD-DSKSVISLFDDFLKKWIKSNPGIPKPRLFTVGRLDVATTG 894
           SS + +SKSV+ LFDD+LK W K NPG+PKPR+FTVGRLDVATTG
Sbjct: 218 SSGEKESKSVLCLFDDYLKSWNKQNPGVPKPRIFTVGRLDVATTG 262


>gb|AFK43008.1| unknown [Medicago truncatula]
          Length = 408

 Score =  249 bits (635), Expect = 1e-63
 Identities = 137/240 (57%), Positives = 163/240 (67%), Gaps = 6/240 (2%)
 Frame = +1

Query: 193 EFNISFGASPSPGVNEAEPRTLVP-DTSPTGSSNAPIPMLIPWIVRGEDGQFTIQSSPPA 369
           +FNISF  S        +P+T  P D    G      P++IPWIVRGEDG F + S PP 
Sbjct: 39  KFNISFSPSNPKPKPTPQPKTQTPHDDDDEG------PLMIPWIVRGEDGNFKLLSEPPP 92

Query: 370 RFLQXXXXXXXXXXXXXXXXXXXSPGA---MTSIVTSASPPKYSKAARRFYNQHIKQKS- 537
            FL+                   +       T I    +PPKYSKAARRFYN++IK  S 
Sbjct: 93  SFLKEMANAQTGTKKSEKDQITKNKKKGEKETKIRAVTAPPKYSKAARRFYNENIKDDSG 152

Query: 538 QRLSKVLAASGVASRRNCEEIIFEGKVTVNGSVCTSPQTRVDIAKDSIYVNGNRLSKKLP 717
            RLSKVLAASGVASRR+CE++IF+GKVTVNGSVC +PQT+VD +KD+IYVNG+RL K+ P
Sbjct: 153 TRLSKVLAASGVASRRSCEDLIFKGKVTVNGSVCNTPQTKVDPSKDNIYVNGSRLPKRQP 212

Query: 718 PKLYFALNKPKGYICSSAD-DSKSVISLFDDFLKKWIKSNPGIPKPRLFTVGRLDVATTG 894
            K+Y ALNKPKGYICSS + +SKSVISLFDDFL  W K +PG+P PRLFTVGRLDVATTG
Sbjct: 213 HKVYLALNKPKGYICSSGEKESKSVISLFDDFLSSWDKKHPGVPPPRLFTVGRLDVATTG 272


>dbj|BAJ86830.1| predicted protein [Hordeum vulgare subsp. vulgare]
           gi|326510163|dbj|BAJ87298.1| predicted protein [Hordeum
           vulgare subsp. vulgare]
          Length = 404

 Score =  249 bits (635), Expect = 1e-63
 Identities = 137/244 (56%), Positives = 167/244 (68%), Gaps = 10/244 (4%)
 Frame = +1

Query: 193 EFNISFGASPSPGVNEAEPRTLVPDTSPTGSSNAPIPMLIPWIVRGEDGQFTIQSSPPAR 372
           +FNI+F A P+P  ++A         SP G S  P   L+PWI RG DG+  + +SPP  
Sbjct: 44  DFNITF-AEPAPAPSKA---------SPGGPSAQP---LVPWIARGADGKPCLHTSPPPD 90

Query: 373 FLQXXXXXXXXXXXXXXXXXXXSPGAMTSIVT---------SASPPKYSKAARRFYNQHI 525
            +Q                    P     + +           +PPK+SKAARRFYN +I
Sbjct: 91  VIQAVAAAEAEAKRAAKRGQRQGPADDAPVASVRVKEKKAAPTAPPKFSKAARRFYNDNI 150

Query: 526 KQ-KSQRLSKVLAASGVASRRNCEEIIFEGKVTVNGSVCTSPQTRVDIAKDSIYVNGNRL 702
           K+ + QRL+KVLAA+GVASRR  EE+IF+GKVTVNGSVCT+PQT+VDI+KDSIYVNGNR+
Sbjct: 151 KEHEPQRLAKVLAAAGVASRRTSEELIFQGKVTVNGSVCTAPQTKVDISKDSIYVNGNRI 210

Query: 703 SKKLPPKLYFALNKPKGYICSSADDSKSVISLFDDFLKKWIKSNPGIPKPRLFTVGRLDV 882
           SKKLPPKLYFA+NKPKGYICSS ++ KSVISL DD+LK W K  PG+PKPRLFTVGRLDV
Sbjct: 211 SKKLPPKLYFAVNKPKGYICSSGEE-KSVISLLDDYLKGWNKLQPGVPKPRLFTVGRLDV 269

Query: 883 ATTG 894
           ATTG
Sbjct: 270 ATTG 273


>gb|EMJ19261.1| hypothetical protein PRUPE_ppa006826mg [Prunus persica]
          Length = 393

 Score =  248 bits (634), Expect = 2e-63
 Identities = 134/234 (57%), Positives = 164/234 (70%)
 Frame = +1

Query: 193 EFNISFGASPSPGVNEAEPRTLVPDTSPTGSSNAPIPMLIPWIVRGEDGQFTIQSSPPAR 372
           EFNI+F  +PS    + +P +  PD            ++IPWIVRGEDG   +QS PPAR
Sbjct: 47  EFNITF--APSKPKPKLKPDSAEPDPEALAGQ-----LIIPWIVRGEDGNLKLQSHPPAR 99

Query: 373 FLQXXXXXXXXXXXXXXXXXXXSPGAMTSIVTSASPPKYSKAARRFYNQHIKQKSQRLSK 552
           FLQ                     GA   + T+   PKYSKAARRFYN++ +  SQRLSK
Sbjct: 100 FLQAIETKSKTKKK--------KEGAEKRVPTAE--PKYSKAARRFYNENFRDASQRLSK 149

Query: 553 VLAASGVASRRNCEEIIFEGKVTVNGSVCTSPQTRVDIAKDSIYVNGNRLSKKLPPKLYF 732
           VLAA+GVASRR+ E++IF+GKVTVNGSVC +PQ+RVD  +D IYVNGNRL K+LPPK+Y 
Sbjct: 150 VLAAAGVASRRSSEQLIFDGKVTVNGSVCNTPQSRVDPGRDIIYVNGNRLPKRLPPKVYL 209

Query: 733 ALNKPKGYICSSADDSKSVISLFDDFLKKWIKSNPGIPKPRLFTVGRLDVATTG 894
           ALNKPKGYIC+S  ++KSV+SLF+D+LK W K N GIP+PRLFTVGRLDVATTG
Sbjct: 210 ALNKPKGYICASG-ENKSVLSLFEDYLKTWDKRNSGIPRPRLFTVGRLDVATTG 262


>ref|NP_001152020.1| LOC100285657 [Zea mays] gi|195651911|gb|ACG45423.1| ribosomal large
           subunit pseudouridine synthase B [Zea mays]
          Length = 406

 Score =  248 bits (633), Expect = 2e-63
 Identities = 136/247 (55%), Positives = 168/247 (68%), Gaps = 17/247 (6%)
 Frame = +1

Query: 205 SFGASPSPGVNEAEPRTLVPDTSPTGSSNAPIPMLIPWIVRGEDGQFTIQSSPPARFLQX 384
           S  ASP   +  AEP       +P+  + +  P L+PWIVRGEDG+  + +SPP   +Q 
Sbjct: 37  STSASPDFNITFAEP-------APSKKAPSAQP-LVPWIVRGEDGKPRLSTSPPPDVIQA 88

Query: 385 XXXXXXXXXXXXXXXXXXSP-GAMTSIVTSAS---------------PPKYSKAARRFYN 516
                                GA+ +   +AS               PPK+SKAARRFYN
Sbjct: 89  IALAEAEAKKAAKKETLKGQNGAVAAAAAAASNASVKGKERKPAPTVPPKFSKAARRFYN 148

Query: 517 QHIKQKS-QRLSKVLAASGVASRRNCEEIIFEGKVTVNGSVCTSPQTRVDIAKDSIYVNG 693
           ++IK++  QRL+KVLAA+GVASRR  EE+IF+GK TVNGSVCTSPQT+VDI+KDSIYVNG
Sbjct: 149 ENIKEREPQRLAKVLAAAGVASRRTSEELIFQGKXTVNGSVCTSPQTKVDISKDSIYVNG 208

Query: 694 NRLSKKLPPKLYFALNKPKGYICSSADDSKSVISLFDDFLKKWIKSNPGIPKPRLFTVGR 873
           NR+SKKLPPKLYFA+NKPKGYICS  ++SKSV+SLF+D+LK W K  PG+PKPRLFTVGR
Sbjct: 209 NRISKKLPPKLYFAVNKPKGYICSCGEESKSVVSLFNDYLKGWNKIQPGLPKPRLFTVGR 268

Query: 874 LDVATTG 894
           LDVAT G
Sbjct: 269 LDVATAG 275


>ref|XP_006411139.1| hypothetical protein EUTSA_v10016747mg [Eutrema salsugineum]
           gi|557112308|gb|ESQ52592.1| hypothetical protein
           EUTSA_v10016747mg [Eutrema salsugineum]
          Length = 403

 Score =  247 bits (631), Expect = 4e-63
 Identities = 132/217 (60%), Positives = 150/217 (69%), Gaps = 6/217 (2%)
 Frame = +1

Query: 262 PDTSPTGSSNAPIPMLIPWIVRGEDGQFTIQSSPPARFLQXXXXXXXXXXXXXXXXXXXS 441
           P  S T        + IPWIVRGEDG+  +QS PPAR +                     
Sbjct: 57  PTPSSTRGGAGVQQLFIPWIVRGEDGKLKVQSQPPARLIHALADATTQNPKKKDKSKKKK 116

Query: 442 PGAMTSIVTSASP-----PKYSKAARRFYNQHIKQKSQRLSKVLAASGVASRRNCEEIIF 606
           P + TS  T +SP     PK SKAARRFYN++ K   QRLSKVLAA+GVASRR  EE+IF
Sbjct: 117 PQS-TSASTPSSPASHSKPKLSKAARRFYNENFKDPPQRLSKVLAAAGVASRRTSEELIF 175

Query: 607 EGKVTVNGSVCTSPQTRVDIAKDSIYVNGNRLSKKLPPKLYFALNKPKGYICSSAD-DSK 783
           +GKVTVNGS+CT+PQ RVD  +D IYVNGNR+ KKLPPK+YFALNKPKGYICSS + + K
Sbjct: 176 DGKVTVNGSLCTAPQIRVDPTRDIIYVNGNRIPKKLPPKVYFALNKPKGYICSSGEKEVK 235

Query: 784 SVISLFDDFLKKWIKSNPGIPKPRLFTVGRLDVATTG 894
           SVISLFDDFL  W K NPG PKPRLFTVGRLDVATTG
Sbjct: 236 SVISLFDDFLASWDKRNPGTPKPRLFTVGRLDVATTG 272