BLASTX nr result
ID: Zingiber24_contig00015008
seq
BLASTX 2.2.25 [Feb-01-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= Zingiber24_contig00015008
(638 letters)
Database: ./nr
37,332,560 sequences; 13,225,080,153 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
ref|XP_004970292.1| PREDICTED: DNA-directed RNA polymerases I, I... 304 2e-80
ref|XP_006644871.1| PREDICTED: DNA-directed RNA polymerases II a... 303 3e-80
ref|NP_001141164.1| uncharacterized protein LOC100273250 [Zea ma... 301 1e-79
ref|NP_001044564.1| Os01g0805800 [Oryza sativa Japonica Group] g... 300 2e-79
gb|EEE55548.1| hypothetical protein OsJ_03801 [Oryza sativa Japo... 298 1e-78
ref|XP_003564430.1| PREDICTED: DNA-directed RNA polymerases I, I... 292 6e-77
gb|EXC15864.1| DNA-directed RNA polymerases I, II, and III subun... 290 2e-76
ref|XP_006858910.1| hypothetical protein AMTR_s00068p00034280 [A... 290 2e-76
dbj|BAK02012.1| predicted protein [Hordeum vulgare subsp. vulgar... 290 2e-76
ref|XP_006451215.1| hypothetical protein CICLE_v10009504mg [Citr... 287 2e-75
ref|XP_002284107.1| PREDICTED: DNA-directed RNA polymerases I, I... 284 1e-74
gb|EMJ19617.1| hypothetical protein PRUPE_ppa011542mg [Prunus pe... 283 4e-74
gb|EOY30723.1| Eukaryotic rpb5 RNA polymerase subunit family pro... 279 4e-73
ref|NP_188871.1| DNA-directed RNA polymerase NRPB5 [Arabidopsis ... 278 1e-72
ref|XP_006298572.1| hypothetical protein CARUB_v10014656mg [Caps... 277 2e-72
ref|XP_002885498.1| ATRPABC24.3 [Arabidopsis lyrata subsp. lyrat... 277 2e-72
ref|XP_002331171.1| predicted protein [Populus trichocarpa] gi|5... 277 2e-72
ref|XP_004239999.1| PREDICTED: DNA-directed RNA polymerases I, I... 276 5e-72
ref|XP_006406183.1| hypothetical protein EUTSA_v10021534mg [Eutr... 275 1e-71
ref|XP_006353289.1| PREDICTED: DNA-directed RNA polymerases II a... 274 1e-71
>ref|XP_004970292.1| PREDICTED: DNA-directed RNA polymerases I, II, and III subunit
RPABC1-like [Setaria italica]
Length = 210
Score = 304 bits (778), Expect = 2e-80
Identities = 151/188 (80%), Positives = 166/188 (88%)
Frame = +2
Query: 5 RLFRIRHTVMQMLNDRGYLVAEAEINMAKKAFLHKFGEGVKREDLFISKSKRNDPGEQIY 184
RL+RIR TVMQML DRGYLV E E+ +++ FL KFGE REDL I+K K+NDP +QIY
Sbjct: 14 RLYRIRRTVMQMLRDRGYLVVEHELATSRRDFLRKFGESFHREDLLINKYKKNDPSDQIY 73
Query: 185 VFFPNDEKVGMKHIKKYVEVMKSENVPRAMLVLQQNLTPFAKSYLLELSSKFHLEVFQEA 364
VFFPND+KVGMKHIKKYVE+M ENV RA+LVLQQNLTPFAKS+L+EL K HLE+FQEA
Sbjct: 74 VFFPNDDKVGMKHIKKYVEMMTHENVSRAVLVLQQNLTPFAKSFLIELEPKIHLEIFQEA 133
Query: 365 ELLVNIKEHVLVPEHQVLTTEEKKTLLERYTLKETQLPRIQITDPIARYYGLKRGQVVKI 544
ELL+NIKEHVLVPEHQVLT EEKKTLLERYTLKETQLPRIQITDPIARYYGLKRGQVVKI
Sbjct: 134 ELLINIKEHVLVPEHQVLTNEEKKTLLERYTLKETQLPRIQITDPIARYYGLKRGQVVKI 193
Query: 545 IRSSETAG 568
IR SETAG
Sbjct: 194 IRPSETAG 201
>ref|XP_006644871.1| PREDICTED: DNA-directed RNA polymerases II and IV subunit 5A-like
[Oryza brachyantha]
Length = 210
Score = 303 bits (776), Expect = 3e-80
Identities = 150/188 (79%), Positives = 166/188 (88%)
Frame = +2
Query: 5 RLFRIRHTVMQMLNDRGYLVAEAEINMAKKAFLHKFGEGVKREDLFISKSKRNDPGEQIY 184
RL RIR TVMQML DRGYLV E E+ M ++ FL KFGE REDL I+K K+NDP +QIY
Sbjct: 14 RLVRIRRTVMQMLRDRGYLVVEHELAMGRRDFLRKFGESFHREDLLINKYKKNDPSDQIY 73
Query: 185 VFFPNDEKVGMKHIKKYVEVMKSENVPRAMLVLQQNLTPFAKSYLLELSSKFHLEVFQEA 364
VFFPND+KVGMKHIKKYVE+MK+ENV RA+LVLQQNLTPFA+S+L EL K HLE+FQEA
Sbjct: 74 VFFPNDDKVGMKHIKKYVEMMKAENVSRAVLVLQQNLTPFARSFLQELEPKIHLEIFQEA 133
Query: 365 ELLVNIKEHVLVPEHQVLTTEEKKTLLERYTLKETQLPRIQITDPIARYYGLKRGQVVKI 544
ELL+NIKEHVL+PEHQVLT EEKKTLLERYTLKETQLPRIQITDPIARYYGL+RGQVVKI
Sbjct: 134 ELLINIKEHVLIPEHQVLTNEEKKTLLERYTLKETQLPRIQITDPIARYYGLRRGQVVKI 193
Query: 545 IRSSETAG 568
IR SETAG
Sbjct: 194 IRPSETAG 201
>ref|NP_001141164.1| uncharacterized protein LOC100273250 [Zea mays]
gi|226533456|ref|NP_001152590.1| DNA-directed RNA
polymerases II 24 kDa polypeptide [Zea mays]
gi|194703030|gb|ACF85599.1| unknown [Zea mays]
gi|195657875|gb|ACG48405.1| DNA-directed RNA polymerases
II 24 kDa polypeptide [Zea mays]
gi|413952167|gb|AFW84816.1| DNA-directed RNA polymerase
II polypeptide [Zea mays]
Length = 210
Score = 301 bits (770), Expect = 1e-79
Identities = 148/188 (78%), Positives = 166/188 (88%)
Frame = +2
Query: 5 RLFRIRHTVMQMLNDRGYLVAEAEINMAKKAFLHKFGEGVKREDLFISKSKRNDPGEQIY 184
RL+RIR TVMQML DRGYLV + E+ +++ FL KFGE REDL I+K K+NDP +QIY
Sbjct: 14 RLYRIRRTVMQMLRDRGYLVVDHELATSRRDFLRKFGESFHREDLLINKYKKNDPSDQIY 73
Query: 185 VFFPNDEKVGMKHIKKYVEVMKSENVPRAMLVLQQNLTPFAKSYLLELSSKFHLEVFQEA 364
VFFPND+KVGMKHIKKYVE+M ENV RA+LVLQQNLTPFAKS+L+EL K HLE+FQEA
Sbjct: 74 VFFPNDDKVGMKHIKKYVEMMTHENVSRAVLVLQQNLTPFAKSFLIELEPKIHLEIFQEA 133
Query: 365 ELLVNIKEHVLVPEHQVLTTEEKKTLLERYTLKETQLPRIQITDPIARYYGLKRGQVVKI 544
E+L+NIKEHVLVPEHQVLT EEKKTLLERYTLKETQLPRIQITDPIARYYGL+RGQVVKI
Sbjct: 134 EMLINIKEHVLVPEHQVLTNEEKKTLLERYTLKETQLPRIQITDPIARYYGLRRGQVVKI 193
Query: 545 IRSSETAG 568
IR SETAG
Sbjct: 194 IRPSETAG 201
>ref|NP_001044564.1| Os01g0805800 [Oryza sativa Japonica Group]
gi|55296830|dbj|BAD68174.1| putative DNA-directed RNA
polymerase II 23K chain [Oryza sativa Japonica Group]
gi|113534095|dbj|BAF06478.1| Os01g0805800 [Oryza sativa
Japonica Group] gi|215737136|dbj|BAG96065.1| unnamed
protein product [Oryza sativa Japonica Group]
gi|215765546|dbj|BAG87243.1| unnamed protein product
[Oryza sativa Japonica Group]
gi|218189238|gb|EEC71665.1| hypothetical protein
OsI_04128 [Oryza sativa Indica Group]
Length = 210
Score = 300 bits (769), Expect = 2e-79
Identities = 149/188 (79%), Positives = 165/188 (87%)
Frame = +2
Query: 5 RLFRIRHTVMQMLNDRGYLVAEAEINMAKKAFLHKFGEGVKREDLFISKSKRNDPGEQIY 184
RL RIR TVMQML DRGYLV E E+ M ++ FL K+GE REDL I+K K+NDP +QIY
Sbjct: 14 RLVRIRRTVMQMLRDRGYLVVEHELAMGRRDFLRKYGESFHREDLLINKYKKNDPSDQIY 73
Query: 185 VFFPNDEKVGMKHIKKYVEVMKSENVPRAMLVLQQNLTPFAKSYLLELSSKFHLEVFQEA 364
VFFPND+KVGMKHIKKYVE+MK+ENV RA+LVLQQNLTPFA+S+L EL K HLE+FQEA
Sbjct: 74 VFFPNDDKVGMKHIKKYVEMMKAENVSRAVLVLQQNLTPFARSFLQELEPKIHLEIFQEA 133
Query: 365 ELLVNIKEHVLVPEHQVLTTEEKKTLLERYTLKETQLPRIQITDPIARYYGLKRGQVVKI 544
ELL+NIKEHVLVPEHQVL EEKKTLLERYTLKETQLPRIQITDPIARYYGL+RGQVVKI
Sbjct: 134 ELLINIKEHVLVPEHQVLNNEEKKTLLERYTLKETQLPRIQITDPIARYYGLRRGQVVKI 193
Query: 545 IRSSETAG 568
IR SETAG
Sbjct: 194 IRPSETAG 201
>gb|EEE55548.1| hypothetical protein OsJ_03801 [Oryza sativa Japonica Group]
Length = 210
Score = 298 bits (762), Expect = 1e-78
Identities = 148/188 (78%), Positives = 164/188 (87%)
Frame = +2
Query: 5 RLFRIRHTVMQMLNDRGYLVAEAEINMAKKAFLHKFGEGVKREDLFISKSKRNDPGEQIY 184
RL RIR TVMQML DRGYLV E E+ M ++ FL K+GE REDL I+K K+NDP +QIY
Sbjct: 14 RLVRIRRTVMQMLRDRGYLVVEHELAMGRRDFLRKYGESFHREDLLINKYKKNDPSDQIY 73
Query: 185 VFFPNDEKVGMKHIKKYVEVMKSENVPRAMLVLQQNLTPFAKSYLLELSSKFHLEVFQEA 364
VFFPND+KVGMKHIKKYVE+MK+ENV RA+LVLQQNLTPFA+S+L EL K HLE+FQEA
Sbjct: 74 VFFPNDDKVGMKHIKKYVEMMKAENVSRAVLVLQQNLTPFARSFLQELEPKIHLEIFQEA 133
Query: 365 ELLVNIKEHVLVPEHQVLTTEEKKTLLERYTLKETQLPRIQITDPIARYYGLKRGQVVKI 544
ELL+NIKEHVLVPEHQVL EKKTLLERYTLKETQLPRIQITDPIARYYGL+RGQVVKI
Sbjct: 134 ELLINIKEHVLVPEHQVLNNGEKKTLLERYTLKETQLPRIQITDPIARYYGLRRGQVVKI 193
Query: 545 IRSSETAG 568
IR SETAG
Sbjct: 194 IRPSETAG 201
>ref|XP_003564430.1| PREDICTED: DNA-directed RNA polymerases I, II, and III subunit
RPABC1-like [Brachypodium distachyon]
Length = 210
Score = 292 bits (747), Expect = 6e-77
Identities = 145/188 (77%), Positives = 162/188 (86%)
Frame = +2
Query: 5 RLFRIRHTVMQMLNDRGYLVAEAEINMAKKAFLHKFGEGVKREDLFISKSKRNDPGEQIY 184
RL RIR TVM ML DRGYLV E E+ M ++ F K+GE REDL I+K K+NDP +QIY
Sbjct: 14 RLVRIRSTVMHMLRDRGYLVVEHELAMTRRDFERKYGESFHREDLLINKCKKNDPNDQIY 73
Query: 185 VFFPNDEKVGMKHIKKYVEVMKSENVPRAMLVLQQNLTPFAKSYLLELSSKFHLEVFQEA 364
VFFPNDEKVGMKHIKKYVE+M +E V RA++V+QQNLTPFAKS+L EL K HLEVFQ+A
Sbjct: 74 VFFPNDEKVGMKHIKKYVEMMNAEKVSRAVVVVQQNLTPFAKSFLQELEPKIHLEVFQDA 133
Query: 365 ELLVNIKEHVLVPEHQVLTTEEKKTLLERYTLKETQLPRIQITDPIARYYGLKRGQVVKI 544
E+L+NIKEHVLVPEHQVLT +EKKTLLERYTLKETQLPRIQITDPIARYYGLKRGQVVKI
Sbjct: 134 EMLINIKEHVLVPEHQVLTNDEKKTLLERYTLKETQLPRIQITDPIARYYGLKRGQVVKI 193
Query: 545 IRSSETAG 568
IR SETAG
Sbjct: 194 IRPSETAG 201
>gb|EXC15864.1| DNA-directed RNA polymerases I, II, and III subunit RPABC1 [Morus
notabilis]
Length = 253
Score = 290 bits (743), Expect = 2e-76
Identities = 144/189 (76%), Positives = 167/189 (88%)
Frame = +2
Query: 2 TRLFRIRHTVMQMLNDRGYLVAEAEINMAKKAFLHKFGEGVKREDLFISKSKRNDPGEQI 181
TRLFRIR TVMQML DR YLV + E+NM K+ F +K+GE +KREDL I+KS+RND +QI
Sbjct: 9 TRLFRIRRTVMQMLRDRNYLVGDFELNMTKEQFRNKYGENMKREDLIINKSRRNDSPDQI 68
Query: 182 YVFFPNDEKVGMKHIKKYVEVMKSENVPRAMLVLQQNLTPFAKSYLLELSSKFHLEVFQE 361
YVFFP ++KVG+K +K Y+ MKSENV RA+LV+QQNLTPFA++ + E+S+KFHLEVFQE
Sbjct: 69 YVFFPEEQKVGVKTMKTYINRMKSENVLRAVLVVQQNLTPFARTCISEISTKFHLEVFQE 128
Query: 362 AELLVNIKEHVLVPEHQVLTTEEKKTLLERYTLKETQLPRIQITDPIARYYGLKRGQVVK 541
AELLVNIKEHVLVPEHQVLT EEKKTLLERYT+KETQLPRIQ+TDPIARYYGLKRGQVVK
Sbjct: 129 AELLVNIKEHVLVPEHQVLTNEEKKTLLERYTVKETQLPRIQVTDPIARYYGLKRGQVVK 188
Query: 542 IIRSSETAG 568
IIR SETAG
Sbjct: 189 IIRPSETAG 197
>ref|XP_006858910.1| hypothetical protein AMTR_s00068p00034280 [Amborella trichopoda]
gi|548863022|gb|ERN20377.1| hypothetical protein
AMTR_s00068p00034280 [Amborella trichopoda]
Length = 206
Score = 290 bits (743), Expect = 2e-76
Identities = 144/189 (76%), Positives = 167/189 (88%)
Frame = +2
Query: 2 TRLFRIRHTVMQMLNDRGYLVAEAEINMAKKAFLHKFGEGVKREDLFISKSKRNDPGEQI 181
++LFRIR T+MQML DRGYLV + EINM K F+ KFG+ VK++DL I+K+ RN+P EQI
Sbjct: 9 SKLFRIRRTLMQMLRDRGYLVGDFEINMTKAQFIEKFGDEVKKDDLVINKTMRNNPSEQI 68
Query: 182 YVFFPNDEKVGMKHIKKYVEVMKSENVPRAMLVLQQNLTPFAKSYLLELSSKFHLEVFQE 361
YVFFP ++KVG+K +K Y E MKSENV RA+LVLQQNLTPFA+ + E+S+KFHLE+FQE
Sbjct: 69 YVFFPEEQKVGVKTVKTYTERMKSENVFRAILVLQQNLTPFARQCVQEISAKFHLEIFQE 128
Query: 362 AELLVNIKEHVLVPEHQVLTTEEKKTLLERYTLKETQLPRIQITDPIARYYGLKRGQVVK 541
+ELLVNIKEHVLVPEHQVLT+EEKKTLLERYTLKETQLPRIQITDPIARYYGLKRGQVVK
Sbjct: 129 SELLVNIKEHVLVPEHQVLTSEEKKTLLERYTLKETQLPRIQITDPIARYYGLKRGQVVK 188
Query: 542 IIRSSETAG 568
IIR SETAG
Sbjct: 189 IIRPSETAG 197
>dbj|BAK02012.1| predicted protein [Hordeum vulgare subsp. vulgare]
gi|326504136|dbj|BAK02854.1| predicted protein [Hordeum
vulgare subsp. vulgare] gi|326511589|dbj|BAJ91939.1|
predicted protein [Hordeum vulgare subsp. vulgare]
Length = 210
Score = 290 bits (743), Expect = 2e-76
Identities = 144/188 (76%), Positives = 161/188 (85%)
Frame = +2
Query: 5 RLFRIRHTVMQMLNDRGYLVAEAEINMAKKAFLHKFGEGVKREDLFISKSKRNDPGEQIY 184
RL RIR TVM ML DRGYLV E E++M ++ F K+GE RED+ I+K K+NDP +QIY
Sbjct: 14 RLVRIRRTVMHMLRDRGYLVVEHELSMTRRDFQRKYGETFHREDMLINKCKKNDPNDQIY 73
Query: 185 VFFPNDEKVGMKHIKKYVEVMKSENVPRAMLVLQQNLTPFAKSYLLELSSKFHLEVFQEA 364
VFFPNDEKVGMKHIKKYVE+M +E V RA+LV+QQNLTPFAKS+L EL K HLEVFQ+A
Sbjct: 74 VFFPNDEKVGMKHIKKYVEMMNAEKVSRAILVVQQNLTPFAKSFLQELEPKIHLEVFQDA 133
Query: 365 ELLVNIKEHVLVPEHQVLTTEEKKTLLERYTLKETQLPRIQITDPIARYYGLKRGQVVKI 544
E+L+NIKEHVLVPEHQVL EEKKTLL RYTLKETQLPRIQITDPIARYYGLKRGQVVKI
Sbjct: 134 EMLINIKEHVLVPEHQVLANEEKKTLLARYTLKETQLPRIQITDPIARYYGLKRGQVVKI 193
Query: 545 IRSSETAG 568
IR SETAG
Sbjct: 194 IRPSETAG 201
>ref|XP_006451215.1| hypothetical protein CICLE_v10009504mg [Citrus clementina]
gi|567918420|ref|XP_006451216.1| hypothetical protein
CICLE_v10009504mg [Citrus clementina]
gi|568843556|ref|XP_006475670.1| PREDICTED: DNA-directed
RNA polymerases II and IV subunit 5A-like isoform X1
[Citrus sinensis] gi|568843558|ref|XP_006475671.1|
PREDICTED: DNA-directed RNA polymerases II and IV
subunit 5A-like isoform X2 [Citrus sinensis]
gi|568843560|ref|XP_006475672.1| PREDICTED: DNA-directed
RNA polymerases II and IV subunit 5A-like isoform X3
[Citrus sinensis] gi|557554441|gb|ESR64455.1|
hypothetical protein CICLE_v10009504mg [Citrus
clementina] gi|557554442|gb|ESR64456.1| hypothetical
protein CICLE_v10009504mg [Citrus clementina]
Length = 206
Score = 287 bits (734), Expect = 2e-75
Identities = 143/188 (76%), Positives = 166/188 (88%)
Frame = +2
Query: 5 RLFRIRHTVMQMLNDRGYLVAEAEINMAKKAFLHKFGEGVKREDLFISKSKRNDPGEQIY 184
RLFRIR TVMQML DRGY V + EINM+K+ F+ KFGE +KREDL I+K+ RND +QIY
Sbjct: 10 RLFRIRRTVMQMLRDRGYFVGDFEINMSKEQFIAKFGENMKREDLVINKALRNDSSDQIY 69
Query: 185 VFFPNDEKVGMKHIKKYVEVMKSENVPRAMLVLQQNLTPFAKSYLLELSSKFHLEVFQEA 364
VFFP+++KVG+K +K Y MKSENV RA+LV+QQNLTPFA++ + E+S+KFHLEVFQEA
Sbjct: 70 VFFPDEQKVGVKTMKTYTNRMKSENVFRAILVVQQNLTPFARTCIQEISAKFHLEVFQEA 129
Query: 365 ELLVNIKEHVLVPEHQVLTTEEKKTLLERYTLKETQLPRIQITDPIARYYGLKRGQVVKI 544
ELLVNIKEHVLVPEHQVLT EEKKTLL+RYT+KETQLPRIQ+TDPIARYYGLKRGQVVKI
Sbjct: 130 ELLVNIKEHVLVPEHQVLTNEEKKTLLKRYTVKETQLPRIQVTDPIARYYGLKRGQVVKI 189
Query: 545 IRSSETAG 568
IR SETAG
Sbjct: 190 IRPSETAG 197
>ref|XP_002284107.1| PREDICTED: DNA-directed RNA polymerases I, II, and III subunit
RPABC1 isoform 1 [Vitis vinifera]
gi|225445172|ref|XP_002284110.1| PREDICTED: DNA-directed
RNA polymerases I, II, and III subunit RPABC1 isoform 2
[Vitis vinifera]
Length = 206
Score = 284 bits (727), Expect = 1e-74
Identities = 142/189 (75%), Positives = 165/189 (87%)
Frame = +2
Query: 2 TRLFRIRHTVMQMLNDRGYLVAEAEINMAKKAFLHKFGEGVKREDLFISKSKRNDPGEQI 181
+RLFRIR TVMQML DRGY V + EINM K F+ KFGE +KREDL I+K+KR D +QI
Sbjct: 9 SRLFRIRKTVMQMLKDRGYFVGDFEINMTKHQFVSKFGENMKREDLVINKAKRTDSSDQI 68
Query: 182 YVFFPNDEKVGMKHIKKYVEVMKSENVPRAMLVLQQNLTPFAKSYLLELSSKFHLEVFQE 361
YVFFP ++KVG+K +K Y MKSENV RA+LV+QQNLTPFA++ + E+S+KFHLEVFQE
Sbjct: 69 YVFFPEEQKVGVKTMKTYTNRMKSENVFRAILVVQQNLTPFARTCINEISTKFHLEVFQE 128
Query: 362 AELLVNIKEHVLVPEHQVLTTEEKKTLLERYTLKETQLPRIQITDPIARYYGLKRGQVVK 541
AELLVNIKEHVLVPEHQVLT+EEKKTLLERYT+KETQLPRIQ++DPIARY+GLKRGQVVK
Sbjct: 129 AELLVNIKEHVLVPEHQVLTSEEKKTLLERYTVKETQLPRIQVSDPIARYFGLKRGQVVK 188
Query: 542 IIRSSETAG 568
IIR SETAG
Sbjct: 189 IIRPSETAG 197
>gb|EMJ19617.1| hypothetical protein PRUPE_ppa011542mg [Prunus persica]
Length = 206
Score = 283 bits (723), Expect = 4e-74
Identities = 142/189 (75%), Positives = 163/189 (86%)
Frame = +2
Query: 2 TRLFRIRHTVMQMLNDRGYLVAEAEINMAKKAFLHKFGEGVKREDLFISKSKRNDPGEQI 181
TRL+R+R TVMQML DR YLV + EINM ++ F K+GE +KREDL I+K+KR+D +QI
Sbjct: 9 TRLYRVRKTVMQMLKDRNYLVGDFEINMTREQFKSKYGENMKREDLTINKTKRSDSSDQI 68
Query: 182 YVFFPNDEKVGMKHIKKYVEVMKSENVPRAMLVLQQNLTPFAKSYLLELSSKFHLEVFQE 361
YVFFP + KVG+K +K Y MKSENV RA+LV QQNLTPFAK+ + E+SSKFHLEVFQE
Sbjct: 69 YVFFPEEPKVGVKTMKTYTNRMKSENVLRAVLVTQQNLTPFAKTCISEISSKFHLEVFQE 128
Query: 362 AELLVNIKEHVLVPEHQVLTTEEKKTLLERYTLKETQLPRIQITDPIARYYGLKRGQVVK 541
AELLVNIKEHVLVPEH VLTTEEKKTLLERYT+KETQLPRIQ+TDPIA+YYGLKRGQVVK
Sbjct: 129 AELLVNIKEHVLVPEHLVLTTEEKKTLLERYTVKETQLPRIQVTDPIAKYYGLKRGQVVK 188
Query: 542 IIRSSETAG 568
IIR SETAG
Sbjct: 189 IIRPSETAG 197
>gb|EOY30723.1| Eukaryotic rpb5 RNA polymerase subunit family protein isoform 1
[Theobroma cacao]
Length = 206
Score = 279 bits (714), Expect = 4e-73
Identities = 139/188 (73%), Positives = 162/188 (86%)
Frame = +2
Query: 5 RLFRIRHTVMQMLNDRGYLVAEAEINMAKKAFLHKFGEGVKREDLFISKSKRNDPGEQIY 184
RLFRIR TVMQML DRGY V + EI M K F+ K+GE +KREDL I+K+KRND +QIY
Sbjct: 10 RLFRIRKTVMQMLKDRGYFVGDFEITMTKAQFISKYGENMKREDLVINKTKRNDNSDQIY 69
Query: 185 VFFPNDEKVGMKHIKKYVEVMKSENVPRAMLVLQQNLTPFAKSYLLELSSKFHLEVFQEA 364
VFFP++ KVG+K +K Y MKSENV RA+LV+QQNLTPFA++ + E+SSKFHLEVFQE+
Sbjct: 70 VFFPDEAKVGVKTMKTYTNRMKSENVFRAVLVVQQNLTPFARTCINEISSKFHLEVFQES 129
Query: 365 ELLVNIKEHVLVPEHQVLTTEEKKTLLERYTLKETQLPRIQITDPIARYYGLKRGQVVKI 544
ELLVN+KEH LVPEHQVLT EEKKTLL+RYT+KETQLPRIQ++DPIARYYGLKRGQVVKI
Sbjct: 130 ELLVNVKEHSLVPEHQVLTNEEKKTLLQRYTVKETQLPRIQVSDPIARYYGLKRGQVVKI 189
Query: 545 IRSSETAG 568
IR SETAG
Sbjct: 190 IRPSETAG 197
>ref|NP_188871.1| DNA-directed RNA polymerase NRPB5 [Arabidopsis thaliana]
gi|75275037|sp|O81098.1|RPB5A_ARATH RecName:
Full=DNA-directed RNA polymerases II and IV subunit 5A;
Short=RPB5a; AltName: Full=DNA-directed RNA polymerase
II subunit E; AltName: Full=RNA polymerase I, II and III
24.3 kDa subunit; Short=AtRPB24.3
gi|13899113|gb|AAK48978.1|AF370551_1 RNA polymerase I,
II and III 24.3 kDa subunit [Arabidopsis thaliana]
gi|15724322|gb|AAL06554.1|AF412101_1 AT3g22320/MCB17_5
[Arabidopsis thaliana] gi|3372233|gb|AAC28253.1| RNA
polymerase I, II and III 24.3 kDa subunit [Arabidopsis
thaliana] gi|9293866|dbj|BAB01769.1| RNA polymerase I,
II and III 24.3 kDa subunit [Arabidopsis thaliana]
gi|21554280|gb|AAM63355.1| RNA polymerase I, II and III
24.3 kDa subunit [Arabidopsis thaliana]
gi|25083949|gb|AAN72141.1| RNA polymerase I, II and III
24.3 kDa subunit [Arabidopsis thaliana]
gi|332643100|gb|AEE76621.1| DNA-directed RNA polymerase
NRPB5 [Arabidopsis thaliana]
Length = 205
Score = 278 bits (710), Expect = 1e-72
Identities = 135/188 (71%), Positives = 164/188 (87%)
Frame = +2
Query: 5 RLFRIRHTVMQMLNDRGYLVAEAEINMAKKAFLHKFGEGVKREDLFISKSKRNDPGEQIY 184
RL+RI+ T+MQML DRGY +A++E+ M K+ F+ K G+ +KREDL K+KRND +Q+Y
Sbjct: 9 RLYRIQKTLMQMLRDRGYFIADSELTMTKQQFIRKHGDNMKREDLVTLKAKRNDNSDQLY 68
Query: 185 VFFPNDEKVGMKHIKKYVEVMKSENVPRAMLVLQQNLTPFAKSYLLELSSKFHLEVFQEA 364
+FFP++ KVG+K +K Y MKSENV RA+LV+QQNLTPFA++ + E+SSKFHLEVFQEA
Sbjct: 69 IFFPDEAKVGVKTMKMYTNRMKSENVFRAILVVQQNLTPFARTCISEISSKFHLEVFQEA 128
Query: 365 ELLVNIKEHVLVPEHQVLTTEEKKTLLERYTLKETQLPRIQITDPIARYYGLKRGQVVKI 544
E+LVNIKEHVLVPEHQVLTTEEKKTLLERYT+KETQLPRIQ+TDPIARY+GLKRGQVVKI
Sbjct: 129 EMLVNIKEHVLVPEHQVLTTEEKKTLLERYTVKETQLPRIQVTDPIARYFGLKRGQVVKI 188
Query: 545 IRSSETAG 568
IR SETAG
Sbjct: 189 IRPSETAG 196
>ref|XP_006298572.1| hypothetical protein CARUB_v10014656mg [Capsella rubella]
gi|482567281|gb|EOA31470.1| hypothetical protein
CARUB_v10014656mg [Capsella rubella]
Length = 205
Score = 277 bits (708), Expect = 2e-72
Identities = 134/188 (71%), Positives = 164/188 (87%)
Frame = +2
Query: 5 RLFRIRHTVMQMLNDRGYLVAEAEINMAKKAFLHKFGEGVKREDLFISKSKRNDPGEQIY 184
RL+RI T+MQML DRGY +A++EI + K+ F+ K+G+ +KREDL K+KRND +Q+Y
Sbjct: 9 RLYRIHKTLMQMLKDRGYFIADSEITITKQQFIRKYGDNMKREDLVTLKAKRNDNSDQLY 68
Query: 185 VFFPNDEKVGMKHIKKYVEVMKSENVPRAMLVLQQNLTPFAKSYLLELSSKFHLEVFQEA 364
+FFP++ KVG+K +K Y MKSENV RA+LV+QQNLTPFA++ + E+SSKFHLEVFQEA
Sbjct: 69 IFFPDEAKVGVKTMKMYTNRMKSENVYRAILVVQQNLTPFARTCISEISSKFHLEVFQEA 128
Query: 365 ELLVNIKEHVLVPEHQVLTTEEKKTLLERYTLKETQLPRIQITDPIARYYGLKRGQVVKI 544
E+LVNIKEHVLVPEHQVLT+EEKKTLLERYT+KETQLPRIQ+TDPIARY+GLKRGQVVKI
Sbjct: 129 EMLVNIKEHVLVPEHQVLTSEEKKTLLERYTVKETQLPRIQVTDPIARYFGLKRGQVVKI 188
Query: 545 IRSSETAG 568
IR SETAG
Sbjct: 189 IRPSETAG 196
>ref|XP_002885498.1| ATRPABC24.3 [Arabidopsis lyrata subsp. lyrata]
gi|297331338|gb|EFH61757.1| ATRPABC24.3 [Arabidopsis
lyrata subsp. lyrata]
Length = 205
Score = 277 bits (708), Expect = 2e-72
Identities = 135/188 (71%), Positives = 163/188 (86%)
Frame = +2
Query: 5 RLFRIRHTVMQMLNDRGYLVAEAEINMAKKAFLHKFGEGVKREDLFISKSKRNDPGEQIY 184
RL+RI+ T+MQML DRGY +A++E+ M K+ F+ K G+ +KREDL K KRND +Q+Y
Sbjct: 9 RLYRIQKTLMQMLKDRGYFIADSELTMTKQQFIRKHGDNMKREDLVTLKVKRNDNSDQLY 68
Query: 185 VFFPNDEKVGMKHIKKYVEVMKSENVPRAMLVLQQNLTPFAKSYLLELSSKFHLEVFQEA 364
+FFP++ KVG+K +K Y MKSENV RA+LV+QQNLTPFA++ + E+SSKFHLEVFQEA
Sbjct: 69 IFFPDEAKVGVKTMKMYTNRMKSENVYRAILVVQQNLTPFARTCISEISSKFHLEVFQEA 128
Query: 365 ELLVNIKEHVLVPEHQVLTTEEKKTLLERYTLKETQLPRIQITDPIARYYGLKRGQVVKI 544
E+LVNIKEHVLVPEHQVLTTEEKKTLLERYT+KETQLPRIQ+TDPIARY+GLKRGQVVKI
Sbjct: 129 EMLVNIKEHVLVPEHQVLTTEEKKTLLERYTVKETQLPRIQVTDPIARYFGLKRGQVVKI 188
Query: 545 IRSSETAG 568
IR SETAG
Sbjct: 189 IRPSETAG 196
>ref|XP_002331171.1| predicted protein [Populus trichocarpa]
gi|566176743|ref|XP_006381734.1| DNA-directed RNA
polymerase family protein [Populus trichocarpa]
gi|550336487|gb|ERP59531.1| DNA-directed RNA polymerase
family protein [Populus trichocarpa]
Length = 206
Score = 277 bits (708), Expect = 2e-72
Identities = 140/188 (74%), Positives = 160/188 (85%)
Frame = +2
Query: 5 RLFRIRHTVMQMLNDRGYLVAEAEINMAKKAFLHKFGEGVKREDLFISKSKRNDPGEQIY 184
RL RIR TVMQML DRGY V + EI M ++ F K+G +KREDL I+K+KRND +QIY
Sbjct: 10 RLLRIRKTVMQMLKDRGYFVGDFEIKMTREQFESKYGNNMKREDLVINKTKRNDSSDQIY 69
Query: 185 VFFPNDEKVGMKHIKKYVEVMKSENVPRAMLVLQQNLTPFAKSYLLELSSKFHLEVFQEA 364
VFFP + KVG+K +K Y MKSENV RA+LV+QQNLTPFA++ + E+S+KFHLEVFQEA
Sbjct: 70 VFFPEEAKVGVKTMKTYTNRMKSENVFRAILVVQQNLTPFARTCINEISTKFHLEVFQEA 129
Query: 365 ELLVNIKEHVLVPEHQVLTTEEKKTLLERYTLKETQLPRIQITDPIARYYGLKRGQVVKI 544
ELLVNIKEHVLVPEHQVL+ EEKKTLLERYT+KETQLPRIQITDPIARYYGLKRGQVVKI
Sbjct: 130 ELLVNIKEHVLVPEHQVLSNEEKKTLLERYTVKETQLPRIQITDPIARYYGLKRGQVVKI 189
Query: 545 IRSSETAG 568
IR SETAG
Sbjct: 190 IRPSETAG 197
>ref|XP_004239999.1| PREDICTED: DNA-directed RNA polymerases I, II, and III subunit
RPABC1-like isoform 1 [Solanum lycopersicum]
gi|460388693|ref|XP_004240000.1| PREDICTED: DNA-directed
RNA polymerases I, II, and III subunit RPABC1-like
isoform 2 [Solanum lycopersicum]
Length = 206
Score = 276 bits (705), Expect = 5e-72
Identities = 134/189 (70%), Positives = 165/189 (87%)
Frame = +2
Query: 2 TRLFRIRHTVMQMLNDRGYLVAEAEINMAKKAFLHKFGEGVKREDLFISKSKRNDPGEQI 181
++LFR+R T+M+ML+DRGYLV + EINM+K FL K+GE +KREDL I K+KRN+ +QI
Sbjct: 9 SKLFRVRKTLMEMLSDRGYLVGDFEINMSKHQFLQKYGENMKREDLVIQKAKRNNSSDQI 68
Query: 182 YVFFPNDEKVGMKHIKKYVEVMKSENVPRAMLVLQQNLTPFAKSYLLELSSKFHLEVFQE 361
YVFFP + KVG+K +K Y E MK E+V +A+L++QQNLTPFA++ + E+S+KFHLEVFQE
Sbjct: 69 YVFFPEEPKVGVKTMKTYTERMKKEDVFQAILIVQQNLTPFARTCISEISTKFHLEVFQE 128
Query: 362 AELLVNIKEHVLVPEHQVLTTEEKKTLLERYTLKETQLPRIQITDPIARYYGLKRGQVVK 541
AE+LVNIK HVL+PEHQ+L+ EEKKTLLERYT+KETQLPRIQITDPIARYYGLKRGQVVK
Sbjct: 129 AEMLVNIKNHVLIPEHQLLSPEEKKTLLERYTVKETQLPRIQITDPIARYYGLKRGQVVK 188
Query: 542 IIRSSETAG 568
IIR SETAG
Sbjct: 189 IIRPSETAG 197
>ref|XP_006406183.1| hypothetical protein EUTSA_v10021534mg [Eutrema salsugineum]
gi|557107329|gb|ESQ47636.1| hypothetical protein
EUTSA_v10021534mg [Eutrema salsugineum]
Length = 206
Score = 275 bits (702), Expect = 1e-71
Identities = 135/188 (71%), Positives = 162/188 (86%)
Frame = +2
Query: 5 RLFRIRHTVMQMLNDRGYLVAEAEINMAKKAFLHKFGEGVKREDLFISKSKRNDPGEQIY 184
RL+RI+ T+MQML DRGY +A++EI M F+ K G+ +KREDL K+KRND +Q+Y
Sbjct: 10 RLYRIQKTLMQMLKDRGYFIADSEITMTLGQFIRKHGDNMKREDLVTLKAKRNDNNDQLY 69
Query: 185 VFFPNDEKVGMKHIKKYVEVMKSENVPRAMLVLQQNLTPFAKSYLLELSSKFHLEVFQEA 364
+FFP++ KVG+K +K Y MKSENV RA+LV+QQNLTPFA++ + E+SSKFHLEVFQEA
Sbjct: 70 IFFPDEAKVGVKTMKMYTNRMKSENVFRAILVVQQNLTPFARTCISEISSKFHLEVFQEA 129
Query: 365 ELLVNIKEHVLVPEHQVLTTEEKKTLLERYTLKETQLPRIQITDPIARYYGLKRGQVVKI 544
E+LVNIKEHVLVPEHQVLTTEEKKTLLERYT+KETQLPRIQ+TDPIARY+GLKRGQVVKI
Sbjct: 130 EMLVNIKEHVLVPEHQVLTTEEKKTLLERYTVKETQLPRIQVTDPIARYFGLKRGQVVKI 189
Query: 545 IRSSETAG 568
IR SETAG
Sbjct: 190 IRPSETAG 197
>ref|XP_006353289.1| PREDICTED: DNA-directed RNA polymerases II and IV subunit 5A-like
[Solanum tuberosum]
Length = 206
Score = 274 bits (701), Expect = 1e-71
Identities = 134/189 (70%), Positives = 163/189 (86%)
Frame = +2
Query: 2 TRLFRIRHTVMQMLNDRGYLVAEAEINMAKKAFLHKFGEGVKREDLFISKSKRNDPGEQI 181
+RLFR+R T+M+ML+DRGYLV + EINM+K FL K+GE +KREDL + K+KRN+ +QI
Sbjct: 9 SRLFRVRKTLMEMLSDRGYLVGDFEINMSKYEFLQKYGENMKREDLVLQKAKRNNSSDQI 68
Query: 182 YVFFPNDEKVGMKHIKKYVEVMKSENVPRAMLVLQQNLTPFAKSYLLELSSKFHLEVFQE 361
YVFFP + KVG+K +K Y E MK E+V +A+L++QQNLTPFA++ + E+S KFHLEVFQE
Sbjct: 69 YVFFPEEPKVGVKTMKTYTERMKKEDVFQAILIVQQNLTPFARTCISEISIKFHLEVFQE 128
Query: 362 AELLVNIKEHVLVPEHQVLTTEEKKTLLERYTLKETQLPRIQITDPIARYYGLKRGQVVK 541
AE+LVNIK HVL+P+HQ LT EEKKTLLERYT+KETQLPRIQITDPIARYYGLKRGQVVK
Sbjct: 129 AEMLVNIKNHVLIPKHQTLTPEEKKTLLERYTVKETQLPRIQITDPIARYYGLKRGQVVK 188
Query: 542 IIRSSETAG 568
IIR SETAG
Sbjct: 189 IIRPSETAG 197