BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Zingiber24_contig00014897
         (1958 letters)

Database: ./nr 
           37,332,560 sequences; 13,225,080,153 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

emb|CBI40014.3| unnamed protein product [Vitis vinifera]              489   e-135
ref|XP_002273602.1| PREDICTED: RNA polymerase sigma factor rpoD-...   488   e-135
gb|EOY10370.1| RNApolymerase sigma subunit 2 [Theobroma cacao]        478   e-132
gb|EXB70625.1| RNA polymerase sigma factor rpoD [Morus notabilis]     465   e-128
ref|XP_006484754.1| PREDICTED: RNA polymerase sigma factor sigB-...   462   e-127
ref|XP_006437338.1| hypothetical protein CICLE_v10030998mg [Citr...   462   e-127
ref|XP_002523972.1| RNA polymerase sigma factor rpoD1, putative ...   461   e-127
ref|XP_004303327.1| PREDICTED: RNA polymerase sigma factor sigB-...   452   e-124
ref|XP_006484755.1| PREDICTED: RNA polymerase sigma factor sigB-...   446   e-122
ref|XP_006878613.1| hypothetical protein AMTR_s00011p00258380 [A...   446   e-122
gb|EMJ05079.1| hypothetical protein PRUPE_ppa006657mg [Prunus pe...   443   e-121
ref|XP_006359117.1| PREDICTED: RNA polymerase sigma factor sigB-...   442   e-121
ref|XP_004145011.1| PREDICTED: RNA polymerase sigma factor sigB-...   441   e-121
ref|XP_004229543.1| PREDICTED: RNA polymerase sigma factor sigB-...   440   e-121
ref|XP_002325455.2| hypothetical protein POPTR_0019s06100g [Popu...   436   e-119
emb|CAD20831.2| sigma factor [Spinacia oleracea]                      436   e-119
ref|NP_172330.1| RNA polymerase sigma subunit 2 [Arabidopsis tha...   436   e-119
ref|XP_004500709.1| PREDICTED: RNA polymerase sigma factor sigB-...   434   e-119
ref|XP_006307126.1| hypothetical protein CARUB_v10008711mg [Caps...   434   e-119
ref|XP_002889701.1| hypothetical protein ARALYDRAFT_470915 [Arab...   431   e-118

>emb|CBI40014.3| unnamed protein product [Vitis vinifera]
          Length = 575

 Score =  489 bits (1259), Expect = e-135
 Identities = 297/579 (51%), Positives = 361/579 (62%), Gaps = 34/579 (5%)
 Frame = -2

Query: 1813 MSCLAAPQFKWPSPLHSLHPKA------RDSVCSRTQCALS---PP------SVVEIE-- 1685
            MSCL  PQFK P    S HPK       R+++  R QCALS   PP      +V++IE  
Sbjct: 1    MSCLL-PQFKCPPDTFSTHPKLHILSKNREAIYFRVQCALSTTSPPLSTSTTAVLDIEKL 59

Query: 1684 HIPTLEAHSTYVS--RPLKYAATVGPPGKASIVATLATESLLTCXXXXXXXXXXXXXXXX 1511
             +P+LE+HS  V+  RP  Y   VGPP +A+  ATLA E+LLT                 
Sbjct: 60   RLPSLESHSNSVAAHRPWTYIGVVGPPTEANFEATLARETLLTSEEAVIAAAAAEAVALA 119

Query: 1510 XXXXXXXXXXXXXAGKNTFAESHMSDLPSTSTRIPSQ-EMVRITETKWI--------SHS 1358
                          GKN  A+S        S    SQ   ++ TET+ I        + +
Sbjct: 120  KAAVKVAKDAARLVGKNNSAKSETKPASFLSGDDTSQFRRIQFTETERIGILGDSVGAET 179

Query: 1357 HIVEPFKDNATKDPSESTDVSTLAFNEPNI--QEIYNSIAVKSXXXXXXXXXXXXXXEKP 1184
             +V+    N+ +D +E +D       E  +   E   SI V+S              EK 
Sbjct: 180  GMVDY---NSLQDVTEDSDDLEPTLEELELLEAEFSKSIVVRSNRQVERKARRARAAEKA 236

Query: 1183 XXXXXXXXXXXXXXXI----QPIDYSDPLRYFRGTTNXXXXXXXXXXXXXXEAIQHLLSL 1016
                                Q +DYSDPLRY RGTT+              E IQ LL L
Sbjct: 237  SAGVVSVRSGSTSRRKRVSLQEVDYSDPLRYLRGTTSTSRLLTATEELELSEGIQDLLKL 296

Query: 1015 ERLKKELVERNGGEPTFAQWAGAAGVDQKTLRKHLSHGRFCKDKMIKSNIRLVISIAKNF 836
            E+L+++L ER G +PTFAQWA AAGVDQKTLR+  ++G  CKDKMIKSNIRLVISIAKN+
Sbjct: 297  EKLQEDLEERFGVKPTFAQWAAAAGVDQKTLRRRTNYGIRCKDKMIKSNIRLVISIAKNY 356

Query: 835  QNAGLNLQDLVLEGCKGLVRGAEKFDASKGFKFSTYAHWWIKQAIRRSLSEQSRIIRLPF 656
            Q AG+N+QDLV EGC+GLVRGAEKFDASKGFKFSTYAHWWIKQA+R+SLS+QSR IRLPF
Sbjct: 357  QGAGMNIQDLVQEGCRGLVRGAEKFDASKGFKFSTYAHWWIKQAVRKSLSDQSRTIRLPF 416

Query: 655  HMVEANYRVREARKQHYSENKRYPDNEEVARITGLPLKRVEAVLLTRKAPISLDQKTGFN 476
            HMVEA YRV+EARKQ YSEN R+P+NEEVA  TGL +KR+ AVLLT KAP SLDQK G N
Sbjct: 417  HMVEATYRVKEARKQLYSENGRHPNNEEVAEATGLSMKRLNAVLLTPKAPRSLDQKIGIN 476

Query: 475  LNLKPSEIIADPEAETSEDILIKHFMKEELHKVLDTLNPREKQVMRLRFGLENGRMKTLQ 296
             NLKPSE+IADP+AET+E++LIK FM+E+L KVL++LNPREKQV+R R+GLE+GR KTLQ
Sbjct: 477  QNLKPSEVIADPDAETAEELLIKQFMREDLEKVLNSLNPREKQVIRWRYGLEDGRTKTLQ 536

Query: 295  EIGELMGISRERVRQIESCAFXXXXXXXXXXXLQQYLIS 179
            EIGELMG+SRER+RQIESCAF           LQQYL+S
Sbjct: 537  EIGELMGVSRERIRQIESCAFRKLKNKRRTKHLQQYLVS 575


>ref|XP_002273602.1| PREDICTED: RNA polymerase sigma factor rpoD-like [Vitis vinifera]
          Length = 578

 Score =  488 bits (1256), Expect = e-135
 Identities = 297/582 (51%), Positives = 361/582 (62%), Gaps = 37/582 (6%)
 Frame = -2

Query: 1813 MSCLAAPQFKWPSPLHSLHPKA---------RDSVCSRTQCALS---PP------SVVEI 1688
            MSCL  PQFK P    S HPK          R+++  R QCALS   PP      +V++I
Sbjct: 1    MSCLL-PQFKCPPDTFSTHPKLHILCKSPKNREAIYFRVQCALSTTSPPLSTSTTAVLDI 59

Query: 1687 E--HIPTLEAHSTYVS--RPLKYAATVGPPGKASIVATLATESLLTCXXXXXXXXXXXXX 1520
            E   +P+LE+HS  V+  RP  Y   VGPP +A+  ATLA E+LLT              
Sbjct: 60   EKLRLPSLESHSNSVAAHRPWTYIGVVGPPTEANFEATLARETLLTSEEAVIAAAAAEAV 119

Query: 1519 XXXXXXXXXXXXXXXXAGKNTFAESHMSDLPSTSTRIPSQ-EMVRITETKWI-------- 1367
                             GKN  A+S        S    SQ   ++ TET+ I        
Sbjct: 120  ALAKAAVKVAKDAARLVGKNNSAKSETKPASFLSGDDTSQFRRIQFTETERIGILGDSVG 179

Query: 1366 SHSHIVEPFKDNATKDPSESTDVSTLAFNEPNI--QEIYNSIAVKSXXXXXXXXXXXXXX 1193
            + + +V+    N+ +D +E +D       E  +   E   SI V+S              
Sbjct: 180  AETGMVDY---NSLQDVTEDSDDLEPTLEELELLEAEFSKSIVVRSNRQVERKARRARAA 236

Query: 1192 EKPXXXXXXXXXXXXXXXI----QPIDYSDPLRYFRGTTNXXXXXXXXXXXXXXEAIQHL 1025
            EK                     Q +DYSDPLRY RGTT+              E IQ L
Sbjct: 237  EKASAGVVSVRSGSTSRRKRVSLQEVDYSDPLRYLRGTTSTSRLLTATEELELSEGIQDL 296

Query: 1024 LSLERLKKELVERNGGEPTFAQWAGAAGVDQKTLRKHLSHGRFCKDKMIKSNIRLVISIA 845
            L LE+L+++L ER G +PTFAQWA AAGVDQKTLR+  ++G  CKDKMIKSNIRLVISIA
Sbjct: 297  LKLEKLQEDLEERFGVKPTFAQWAAAAGVDQKTLRRRTNYGIRCKDKMIKSNIRLVISIA 356

Query: 844  KNFQNAGLNLQDLVLEGCKGLVRGAEKFDASKGFKFSTYAHWWIKQAIRRSLSEQSRIIR 665
            KN+Q AG+N+QDLV EGC+GLVRGAEKFDASKGFKFSTYAHWWIKQA+R+SLS+QSR IR
Sbjct: 357  KNYQGAGMNIQDLVQEGCRGLVRGAEKFDASKGFKFSTYAHWWIKQAVRKSLSDQSRTIR 416

Query: 664  LPFHMVEANYRVREARKQHYSENKRYPDNEEVARITGLPLKRVEAVLLTRKAPISLDQKT 485
            LPFHMVEA YRV+EARKQ YSEN R+P+NEEVA  TGL +KR+ AVLLT KAP SLDQK 
Sbjct: 417  LPFHMVEATYRVKEARKQLYSENGRHPNNEEVAEATGLSMKRLNAVLLTPKAPRSLDQKI 476

Query: 484  GFNLNLKPSEIIADPEAETSEDILIKHFMKEELHKVLDTLNPREKQVMRLRFGLENGRMK 305
            G N NLKPSE+IADP+AET+E++LIK FM+E+L KVL++LNPREKQV+R R+GLE+GR K
Sbjct: 477  GINQNLKPSEVIADPDAETAEELLIKQFMREDLEKVLNSLNPREKQVIRWRYGLEDGRTK 536

Query: 304  TLQEIGELMGISRERVRQIESCAFXXXXXXXXXXXLQQYLIS 179
            TLQEIGELMG+SRER+RQIESCAF           LQQYL+S
Sbjct: 537  TLQEIGELMGVSRERIRQIESCAFRKLKNKRRTKHLQQYLVS 578


>gb|EOY10370.1| RNApolymerase sigma subunit 2 [Theobroma cacao]
          Length = 623

 Score =  478 bits (1229), Expect = e-132
 Identities = 284/557 (50%), Positives = 342/557 (61%), Gaps = 32/557 (5%)
 Frame = -2

Query: 1753 KARDSVCSRTQCALSPPS---------VVEIE--HIPTLEAH--STYVSRPLKYAATVGP 1613
            K ++ +C RTQC LS  S         V+++E   +P+ EAH  S  V RP  Y    GP
Sbjct: 64   KHKEHICFRTQCVLSTTSSSTSTTATAVLDVEKLRLPSFEAHPNSVAVDRPWTYIGATGP 123

Query: 1612 PGKASIVATLATESLLTCXXXXXXXXXXXXXXXXXXXXXXXXXXXXXAGKNTFAESHMSD 1433
            P +AS+ ATLAT++LLT                              A    +A++ M  
Sbjct: 124  PSEASLGATLATDNLLTSDEAVIAAAAAEAVALARAAVKVAKDAALMAENYNYAKTEMKS 183

Query: 1432 LPSTSTRIPSQEMVRITETKWISHSHIVEPFKDNATKDPSESTDVSTLAFNEPNIQEIYN 1253
              S +T   + +    TE +           +    +D SE    +     EP  +E+ +
Sbjct: 184  GVSFATDSFTSKWALFTEAERAGIIGDSPTDESEMEEDDSEQNSTTESDELEPTNEELEH 243

Query: 1252 -------SIAVKSXXXXXXXXXXXXXXEKPXXXXXXXXXXXXXXXI----QPIDYSDPLR 1106
                   SIAV+S              EK                     Q +DYSDPLR
Sbjct: 244  LEEQLSRSIAVRSRRQTERKAKRTRAAEKAAANVVSVKSGSTNRKRRGALQDVDYSDPLR 303

Query: 1105 YFRGTTNXXXXXXXXXXXXXXEAIQHLLSLERLKKELVERNGGEPTFAQWAGAAGVDQKT 926
            Y RGTT+              E IQ LL LERL++EL ER GG+PTFAQWA AAGVDQKT
Sbjct: 304  YLRGTTSTSRLLTANEELELSEGIQDLLKLERLQEELAERCGGQPTFAQWAAAAGVDQKT 363

Query: 925  LRKHLSHGRFCKDKMIKSNIRLVISIAKNFQNAGLNLQDLVLEGCKGLVRGAEKFDASKG 746
            LR  L++G  CKDKMIKSNIRLVISIAKN+Q AG+NLQDLV EGC+GLVRGAEKFDASKG
Sbjct: 364  LRSRLNYGVHCKDKMIKSNIRLVISIAKNYQGAGMNLQDLVQEGCRGLVRGAEKFDASKG 423

Query: 745  FKFSTYAHWWIKQAIRRSLSEQSRIIRLPFHMVEANYRVREARKQHYSENKRYPDNEEVA 566
            FKFSTYAHWWIKQA+R+SLS+QSR IRLPFHMVEA YRV+EARKQ YSEN R+PDNEEVA
Sbjct: 424  FKFSTYAHWWIKQAVRKSLSDQSRTIRLPFHMVEATYRVKEARKQLYSENGRHPDNEEVA 483

Query: 565  RITGLPLKRVEAVLLTRKAPISLDQKTGFNLNLKPS--------EIIADPEAETSEDILI 410
              TGL +KR+ AVLLT KAP SLDQK G N NLKPS        E+IADPEAET+ED+LI
Sbjct: 484  EATGLSMKRLTAVLLTPKAPRSLDQKIGINQNLKPSVCPVSSLAEVIADPEAETAEDMLI 543

Query: 409  KHFMKEELHKVLDTLNPREKQVMRLRFGLENGRMKTLQEIGELMGISRERVRQIESCAFX 230
            K FM+++L KVLD+L+ RE+QV+R RFG+E+GRMKTLQEIGELMG+SRER+RQIESCAF 
Sbjct: 544  KQFMRKDLEKVLDSLSQRERQVIRWRFGMEDGRMKTLQEIGELMGVSRERIRQIESCAFR 603

Query: 229  XXXXXXXXXXLQQYLIS 179
                      LQQYL+S
Sbjct: 604  KLKNKKRTKHLQQYLLS 620


>gb|EXB70625.1| RNA polymerase sigma factor rpoD [Morus notabilis]
          Length = 574

 Score =  465 bits (1196), Expect = e-128
 Identities = 284/553 (51%), Positives = 346/553 (62%), Gaps = 19/553 (3%)
 Frame = -2

Query: 1780 PSPLHSLHPKARDSVCSRTQCALSPPS---------VVEIEHI--PTLEAHSTYVS--RP 1640
            P+P   L PKARD + S  QC LS  S         V+ +E +  P+L+A+S  V+  RP
Sbjct: 27   PTPNSHL-PKARD-INSLAQCVLSTTSPSTSVGATYVLSVEKLRFPSLDANSESVTSNRP 84

Query: 1639 LKYAATVGPPGKASIVATLATESLLTCXXXXXXXXXXXXXXXXXXXXXXXXXXXXXAGKN 1460
              Y    GPP +A+  ATLATE+LLT                                 +
Sbjct: 85   WTYTGATGPPVEANFEATLATETLLTSEEAVIAAAAAEAVTLAKAAVKVAKDAALLVRPS 144

Query: 1459 TFAESHMSDLPSTSTRIPSQEMVRITETKWISHSHIVEPFKDNATKDPS-ESTDVSTLAF 1283
            T AES +S + S +  I + +          +   ++E   D+  KD + ES D+     
Sbjct: 145  TRAES-ISLVSSEARNIKTAQAASRVRDSLRAEMALIE---DHPPKDAAKESNDLQPTNE 200

Query: 1282 NEPNIQE-IYNSIAVKSXXXXXXXXXXXXXXEKPXXXXXXXXXXXXXXXI----QPIDYS 1118
                +QE +  SIAV+S              EK                     Q +D+S
Sbjct: 201  ELRILQEQLSKSIAVRSRRQSERKAKRDRAAEKAAANVVAVKSGSNSRKKRASVQDVDHS 260

Query: 1117 DPLRYFRGTTNXXXXXXXXXXXXXXEAIQHLLSLERLKKELVERNGGEPTFAQWAGAAGV 938
            DPLRY R TT+              E IQ LL LE+L++EL ER GG PTFAQWA AAGV
Sbjct: 261  DPLRYLRSTTSTSRLLTATEEIELSEGIQDLLKLEKLQEELAERCGGPPTFAQWAAAAGV 320

Query: 937  DQKTLRKHLSHGRFCKDKMIKSNIRLVISIAKNFQNAGLNLQDLVLEGCKGLVRGAEKFD 758
            DQKTLR+ +++G  CKDKMIKSN+RLVISIAKN+Q AG+NLQDLV EGC+GLVRGAEKFD
Sbjct: 321  DQKTLRRRINYGILCKDKMIKSNVRLVISIAKNYQGAGMNLQDLVQEGCRGLVRGAEKFD 380

Query: 757  ASKGFKFSTYAHWWIKQAIRRSLSEQSRIIRLPFHMVEANYRVREARKQHYSENKRYPDN 578
            ASKGFKFSTYAHWWIKQA+R+SLS+QSR IRLPFHMVEA YRV+EARKQ YSEN R P++
Sbjct: 381  ASKGFKFSTYAHWWIKQAVRKSLSDQSRTIRLPFHMVEATYRVKEARKQLYSENGRQPND 440

Query: 577  EEVARITGLPLKRVEAVLLTRKAPISLDQKTGFNLNLKPSEIIADPEAETSEDILIKHFM 398
            EEVA  TGL +KR+ AVLLT KAP SL+QK G N NLKPSEIIADP+AET ED+L + FM
Sbjct: 441  EEVAEATGLSMKRLAAVLLTPKAPRSLEQKIGINQNLKPSEIIADPDAETLEDVLTRQFM 500

Query: 397  KEELHKVLDTLNPREKQVMRLRFGLENGRMKTLQEIGELMGISRERVRQIESCAFXXXXX 218
            K++L KVLD+LN REKQV+R RFG+++GRMKTLQEIGELMG+SRER+RQIESCAF     
Sbjct: 501  KQDLDKVLDSLNQREKQVIRWRFGMDDGRMKTLQEIGELMGVSRERIRQIESCAFRKLKN 560

Query: 217  XXXXXXLQQYLIS 179
                  LQQYLIS
Sbjct: 561  KKRTKHLQQYLIS 573


>ref|XP_006484754.1| PREDICTED: RNA polymerase sigma factor sigB-like isoform X1 [Citrus
            sinensis]
          Length = 605

 Score =  462 bits (1190), Expect = e-127
 Identities = 289/586 (49%), Positives = 348/586 (59%), Gaps = 41/586 (6%)
 Frame = -2

Query: 1813 MSCLAAPQFKWPSPL-------------HSLHP-KARDSVCSRTQCALSPPS-------- 1700
            MSCL  PQFK                  HS HP K+++ +C RT C LS  S        
Sbjct: 24   MSCLL-PQFKCQPDTFSIHFRTLHNHQHHSSHPSKSKEPICFRTHCVLSTTSPSTSTAMT 82

Query: 1699 -VVEIE--HIPTLEAHSTYVS--RPLKYAATVGPPGKASIVATLATESLLTCXXXXXXXX 1535
             V+++E   +P+LEAHS  V+  R   Y   VGP  + ++  +LATE+L T         
Sbjct: 83   TVLDVEKLRLPSLEAHSNAVAANRQWTYFGAVGPSTEENLGTSLATETL-TSDEAVIAAA 141

Query: 1534 XXXXXXXXXXXXXXXXXXXXXAGKNTFAESHMSDLPSTSTRIPSQEMVRITETKW---IS 1364
                                    +  A+       S S    +    ++TE +    I 
Sbjct: 142  SAEAVALARAAVKVAKDAALMVNHHNSAKPKSKPAISLSADTNTSMWAQLTERERASIIG 201

Query: 1363 HSHIVEPFKDNATKDPSESTDVSTLAFNEPNIQE-------IYNSIAVKSXXXXXXXXXX 1205
             S IVE   +   ++ SE   ++  A  EP  +E       +  SIAV+S          
Sbjct: 202  DSVIVEAAPE---EEYSEQQPLNKSADLEPTHEELKLLEEQVSQSIAVRSRRQTERKARR 258

Query: 1204 XXXXEKPXXXXXXXXXXXXXXXIQP----IDYSDPLRYFRGTTNXXXXXXXXXXXXXXEA 1037
                EK                 +P    +DYSDPLRY R TT+                
Sbjct: 259  TRAAEKAAANVMSVKSGSTSRRKRPSVQEVDYSDPLRYLRATTSSSRLLTANEEMQLSAG 318

Query: 1036 IQHLLSLERLKKELVERNGGEPTFAQWAGAAGVDQKTLRKHLSHGRFCKDKMIKSNIRLV 857
            IQ LL LE L++ L ER GG PTFAQWA AAGVDQ+ LR+ L++G  CKDKMI SNIRLV
Sbjct: 319  IQDLLKLEGLREVLSERCGGSPTFAQWAAAAGVDQRELRRRLNYGILCKDKMITSNIRLV 378

Query: 856  ISIAKNFQNAGLNLQDLVLEGCKGLVRGAEKFDASKGFKFSTYAHWWIKQAIRRSLSEQS 677
            ISIAKN+Q AG+NLQDLV EGC+GLVRGAEKFDASKGFKFSTYAHWWIKQA+R+SLS+QS
Sbjct: 379  ISIAKNYQGAGMNLQDLVQEGCRGLVRGAEKFDASKGFKFSTYAHWWIKQAVRKSLSDQS 438

Query: 676  RIIRLPFHMVEANYRVREARKQHYSENKRYPDNEEVARITGLPLKRVEAVLLTRKAPISL 497
            R IRLPFHMVEA YRV+EARKQ YSEN R+P+NEEVA  TGL +KR+ AVLLT KAP SL
Sbjct: 439  RTIRLPFHMVEATYRVKEARKQLYSENGRHPNNEEVAEATGLSMKRLHAVLLTPKAPRSL 498

Query: 496  DQKTGFNLNLKPSEIIADPEAETSEDILIKHFMKEELHKVLDTLNPREKQVMRLRFGLEN 317
            DQK G N NLKPSE+IADPEAET+ED+LIK FMKE+L KVLDTLNPRE+QV+R RFGLE+
Sbjct: 499  DQKFGINQNLKPSEVIADPEAETAEDLLIKKFMKEDLEKVLDTLNPRERQVVRWRFGLED 558

Query: 316  GRMKTLQEIGELMGISRERVRQIESCAFXXXXXXXXXXXLQQYLIS 179
            GRMKTLQEIGELMG+SRER+RQIES AF           L QY I+
Sbjct: 559  GRMKTLQEIGELMGVSRERIRQIESSAFRKLKNKKRTKHLMQYAIT 604


>ref|XP_006437338.1| hypothetical protein CICLE_v10030998mg [Citrus clementina]
            gi|557539534|gb|ESR50578.1| hypothetical protein
            CICLE_v10030998mg [Citrus clementina]
          Length = 605

 Score =  462 bits (1188), Expect = e-127
 Identities = 288/586 (49%), Positives = 348/586 (59%), Gaps = 41/586 (6%)
 Frame = -2

Query: 1813 MSCLAAPQFKWPSPL-------------HSLHP-KARDSVCSRTQCALSPPS-------- 1700
            MSCL  PQFK                  HS HP K+++ +C RT C LS  S        
Sbjct: 24   MSCLL-PQFKCQPDTFSIHFRTLHNHQHHSSHPSKSKEPICFRTHCVLSTTSPSTSTAMT 82

Query: 1699 -VVEIE--HIPTLEAHSTYVS--RPLKYAATVGPPGKASIVATLATESLLTCXXXXXXXX 1535
             V+++E   +P+LEAHS  V+  R   Y   VGP  + ++  +LATE+L T         
Sbjct: 83   TVLDVEKLRLPSLEAHSNAVAANRQWTYFGAVGPSTEENLGTSLATETL-TSDEAVIAAA 141

Query: 1534 XXXXXXXXXXXXXXXXXXXXXAGKNTFAESHMSDLPSTSTRIPSQEMVRITETKW---IS 1364
                                    +  A+       S S    +    ++TE +    I 
Sbjct: 142  SAEAVALARAAVKVAKDAALMVNHHNSAKPKSKPAISLSADTSTSMWAQLTERERASIIG 201

Query: 1363 HSHIVEPFKDNATKDPSESTDVSTLAFNEPNIQE-------IYNSIAVKSXXXXXXXXXX 1205
             S IVE   +   ++ SE   ++  A  EP  +E       +  SIAV+S          
Sbjct: 202  DSVIVEAAPE---EEYSEQQPLNKSADLEPTHEELKLLEEQVSQSIAVRSRRQTERKARR 258

Query: 1204 XXXXEKPXXXXXXXXXXXXXXXIQP----IDYSDPLRYFRGTTNXXXXXXXXXXXXXXEA 1037
                EK                 +P    +DYSDPLRY R TT+                
Sbjct: 259  TRAAEKAAANVMSVKSGSTTRRKRPSVQEVDYSDPLRYLRATTSSSRLLTANEEMQLSAG 318

Query: 1036 IQHLLSLERLKKELVERNGGEPTFAQWAGAAGVDQKTLRKHLSHGRFCKDKMIKSNIRLV 857
            IQ LL LE L++ L ER GG PTFAQWA AAGVDQ+ LR+ L++G  CKDKMI SNIRLV
Sbjct: 319  IQDLLKLEGLREVLSERCGGSPTFAQWAAAAGVDQRELRRRLNYGILCKDKMITSNIRLV 378

Query: 856  ISIAKNFQNAGLNLQDLVLEGCKGLVRGAEKFDASKGFKFSTYAHWWIKQAIRRSLSEQS 677
            ISIAKN+Q AG+NLQDLV EGC+GLVRGAEKFDASKGFKFSTYAHWWIKQA+R+SLS+QS
Sbjct: 379  ISIAKNYQGAGMNLQDLVQEGCRGLVRGAEKFDASKGFKFSTYAHWWIKQAVRKSLSDQS 438

Query: 676  RIIRLPFHMVEANYRVREARKQHYSENKRYPDNEEVARITGLPLKRVEAVLLTRKAPISL 497
            R IRLPFHMVEA YRV+EARKQ YSEN R+P+NEEVA+ TGL +KR+ AVLL  KAP SL
Sbjct: 439  RTIRLPFHMVEATYRVKEARKQLYSENGRHPNNEEVAKATGLSMKRLHAVLLAPKAPRSL 498

Query: 496  DQKTGFNLNLKPSEIIADPEAETSEDILIKHFMKEELHKVLDTLNPREKQVMRLRFGLEN 317
            DQK G N NLKPSE+IADPEAET+ED+LIK FMKE+L KVLDTLNPRE+QV+R RFGLE+
Sbjct: 499  DQKFGINQNLKPSEVIADPEAETAEDLLIKKFMKEDLEKVLDTLNPRERQVVRWRFGLED 558

Query: 316  GRMKTLQEIGELMGISRERVRQIESCAFXXXXXXXXXXXLQQYLIS 179
            GRMKTLQEIGELMG+SRER+RQIES AF           L QY I+
Sbjct: 559  GRMKTLQEIGELMGVSRERIRQIESSAFRKLKNKKRTKHLMQYAIT 604


>ref|XP_002523972.1| RNA polymerase sigma factor rpoD1, putative [Ricinus communis]
            gi|223536699|gb|EEF38340.1| RNA polymerase sigma factor
            rpoD1, putative [Ricinus communis]
          Length = 569

 Score =  461 bits (1185), Expect = e-127
 Identities = 284/578 (49%), Positives = 351/578 (60%), Gaps = 33/578 (5%)
 Frame = -2

Query: 1813 MSCLAAPQFKWPSPLHSLH--------------PKARDSVCSRTQCALSPPS------VV 1694
            MSCL  PQFK      S+H               K+R+ +  R QC LS  S      V+
Sbjct: 2    MSCLL-PQFKCQPDTFSIHFRANYFHFSNVTQSTKSREPIYYRAQCILSTTSPSTSTAVL 60

Query: 1693 EIE--HIPTLEAHSTYVSRPLKYAATVGPPGKASIVATLATESLLTCXXXXXXXXXXXXX 1520
            ++E   +P+ EA S  +       A   P   A+  +TLATE+L+T              
Sbjct: 61   DLEKLRLPSFEAPSDSI-------APNSPWTYATFGSTLATETLITSDEAVIAAAAAEAV 113

Query: 1519 XXXXXXXXXXXXXXXXAGKNTFAESHMSDLPSTSTRIPSQEMVRITET---KWISHSHIV 1349
                                  AE+  S L S ST I +    + TET   + I  S   
Sbjct: 114  ALARAAVKVAKDAALLVKNFPSAETE-SKLTSPST-IDASRWPQFTETERARIIGDSVAT 171

Query: 1348 E--PFKDNATKDPSESTDVSTLAFNEPNI--QEIYNSIAVKSXXXXXXXXXXXXXXEKPX 1181
            E  P ++++ +   + +D   L   E  +  +++   IAV+S              EK  
Sbjct: 172  ETGPREESSMQSSIKESDYLELTHKELELLQKQLSEGIAVRSRRQTERKARRARAVEKAA 231

Query: 1180 XXXXXXXXXXXXXXI----QPIDYSDPLRYFRGTTNXXXXXXXXXXXXXXEAIQHLLSLE 1013
                               Q +DYSDPLRY RGTT+               AIQ LL LE
Sbjct: 232  SSVVSVKPGSTSKKKRGSLQEVDYSDPLRYLRGTTSTSRLLTASEELELSAAIQDLLKLE 291

Query: 1012 RLKKELVERNGGEPTFAQWAGAAGVDQKTLRKHLSHGRFCKDKMIKSNIRLVISIAKNFQ 833
            RL++EL ER GG+PTFAQWA AAGVDQ+TLRK ++HG  CKDKMIKSNIRLVISIAKN+Q
Sbjct: 292  RLQEELAERYGGQPTFAQWAAAAGVDQRTLRKRINHGTICKDKMIKSNIRLVISIAKNYQ 351

Query: 832  NAGLNLQDLVLEGCKGLVRGAEKFDASKGFKFSTYAHWWIKQAIRRSLSEQSRIIRLPFH 653
             AG+NLQDLV EGC+GLVRGAEKFDASKGFKFSTYAHWWIKQA+R+SLS+QSR IRLPFH
Sbjct: 352  GAGMNLQDLVQEGCRGLVRGAEKFDASKGFKFSTYAHWWIKQAVRKSLSDQSRTIRLPFH 411

Query: 652  MVEANYRVREARKQHYSENKRYPDNEEVARITGLPLKRVEAVLLTRKAPISLDQKTGFNL 473
            MVEA YRV+EARKQ YSEN R+PD+EEVA   GL +KR+ AVLLT KAP SLDQK G N+
Sbjct: 412  MVEATYRVKEARKQLYSENGRHPDDEEVAEAAGLSMKRLSAVLLTPKAPRSLDQKIGMNM 471

Query: 472  NLKPSEIIADPEAETSEDILIKHFMKEELHKVLDTLNPREKQVMRLRFGLENGRMKTLQE 293
            +LKPSE+IADPEAET+E++L+K FMK++L KVL+TLNPRE QV+R RFGLE+GRMKTLQE
Sbjct: 472  DLKPSEVIADPEAETAEELLMKQFMKQDLEKVLNTLNPRETQVVRWRFGLEDGRMKTLQE 531

Query: 292  IGELMGISRERVRQIESCAFXXXXXXXXXXXLQQYLIS 179
            IGE+MG+SRER+RQIES AF           L+QYL++
Sbjct: 532  IGEIMGVSRERIRQIESSAFRKLKNKKRTKQLKQYLLA 569


>ref|XP_004303327.1| PREDICTED: RNA polymerase sigma factor sigB-like [Fragaria vesca
            subsp. vesca]
          Length = 616

 Score =  452 bits (1164), Expect = e-124
 Identities = 259/512 (50%), Positives = 325/512 (63%), Gaps = 13/512 (2%)
 Frame = -2

Query: 1675 TLEAHSTYVSRPLKYAATVGPPGKASIVATLATESLLTCXXXXXXXXXXXXXXXXXXXXX 1496
            T+ + S  V+RP  Y   +GPP +A+  A LATE+LLT                      
Sbjct: 107  TVNSDSLIVNRPWTYTGAIGPPTEANYGAALATETLLTSEEAVIAAAAAEAVTLAKAALK 166

Query: 1495 XXXXXXXXAGKNTFAESHMSDLPSTST---------RIPSQEMVRITETKWISHSHIVEP 1343
                       N +A+   S   S  T          + ++  +RI ++   S + +VE 
Sbjct: 167  VAKDVALLVSNNHYAKVENSSPVSCGTSAFHINWAQHLETEPTLRIGDSM-ASETALVED 225

Query: 1342 FKDNATKDPSESTDVSTLAFNEPNIQEIYNSIAVKSXXXXXXXXXXXXXXEKPXXXXXXX 1163
                   + SE+ + +   F E   +++ N IA +S              EK        
Sbjct: 226  HFLQIAINESENVEPANEEF-ELLQEQLSNGIAARSSRQTERKARRTRAAEKAAASIVSV 284

Query: 1162 XXXXXXXXI----QPIDYSDPLRYFRGTTNXXXXXXXXXXXXXXEAIQHLLSLERLKKEL 995
                         Q +D+SDPLRY R TT+              E IQ LL LE+L+++L
Sbjct: 285  KSGSTSRKKRASLQDVDHSDPLRYLRATTHTSRLLTANEEIELSEGIQELLKLEKLQEDL 344

Query: 994  VERNGGEPTFAQWAGAAGVDQKTLRKHLSHGRFCKDKMIKSNIRLVISIAKNFQNAGLNL 815
             +R G +PTFAQWA AAGVDQKTLRK +++G  CKDKMIKSNIRLVISIAKN+Q AG+NL
Sbjct: 345  AQRCGTQPTFAQWAAAAGVDQKTLRKRVNYGIMCKDKMIKSNIRLVISIAKNYQGAGMNL 404

Query: 814  QDLVLEGCKGLVRGAEKFDASKGFKFSTYAHWWIKQAIRRSLSEQSRIIRLPFHMVEANY 635
            QDLV EGC+GLVRGAEKFDASKGFKFSTYAHWWIKQA+R+SLS+QSR IRLPFHMVEA Y
Sbjct: 405  QDLVQEGCRGLVRGAEKFDASKGFKFSTYAHWWIKQAVRKSLSDQSRTIRLPFHMVEATY 464

Query: 634  RVREARKQHYSENKRYPDNEEVARITGLPLKRVEAVLLTRKAPISLDQKTGFNLNLKPSE 455
            RVREA+KQ YS N R+P++EEVA  TGL +KR+ AVLLT KAP SL+QK G N NLKPS+
Sbjct: 465  RVREAKKQLYSVNGRHPNDEEVAEATGLSMKRLAAVLLTPKAPRSLEQKIGINQNLKPSD 524

Query: 454  IIADPEAETSEDILIKHFMKEELHKVLDTLNPREKQVMRLRFGLENGRMKTLQEIGELMG 275
            +IADP+AET+ED+L+K FMK++L KVLD+LNPREKQV+R RFG+E+GRMKTLQEIGELMG
Sbjct: 525  VIADPDAETAEDLLMKKFMKQDLEKVLDSLNPREKQVIRWRFGMEDGRMKTLQEIGELMG 584

Query: 274  ISRERVRQIESCAFXXXXXXXXXXXLQQYLIS 179
            +SRER+RQIESCAF           LQQY++S
Sbjct: 585  VSRERIRQIESCAFRKLKNKKRTKHLQQYVLS 616


>ref|XP_006484755.1| PREDICTED: RNA polymerase sigma factor sigB-like isoform X2 [Citrus
            sinensis]
          Length = 525

 Score =  446 bits (1148), Expect = e-122
 Identities = 269/522 (51%), Positives = 321/522 (61%), Gaps = 16/522 (3%)
 Frame = -2

Query: 1696 VEIEHIPTLEAHSTYVS--RPLKYAATVGPPGKASIVATLATESLLTCXXXXXXXXXXXX 1523
            VE   +P+LEAHS  V+  R   Y   VGP  + ++  +LATE+L T             
Sbjct: 7    VEKLRLPSLEAHSNAVAANRQWTYFGAVGPSTEENLGTSLATETL-TSDEAVIAAASAEA 65

Query: 1522 XXXXXXXXXXXXXXXXXAGKNTFAESHMSDLPSTSTRIPSQEMVRITETKW---ISHSHI 1352
                                +  A+       S S    +    ++TE +    I  S I
Sbjct: 66   VALARAAVKVAKDAALMVNHHNSAKPKSKPAISLSADTNTSMWAQLTERERASIIGDSVI 125

Query: 1351 VEPFKDNATKDPSESTDVSTLAFNEPNIQE-------IYNSIAVKSXXXXXXXXXXXXXX 1193
            VE   +   ++ SE   ++  A  EP  +E       +  SIAV+S              
Sbjct: 126  VEAAPE---EEYSEQQPLNKSADLEPTHEELKLLEEQVSQSIAVRSRRQTERKARRTRAA 182

Query: 1192 EKPXXXXXXXXXXXXXXXIQP----IDYSDPLRYFRGTTNXXXXXXXXXXXXXXEAIQHL 1025
            EK                 +P    +DYSDPLRY R TT+                IQ L
Sbjct: 183  EKAAANVMSVKSGSTSRRKRPSVQEVDYSDPLRYLRATTSSSRLLTANEEMQLSAGIQDL 242

Query: 1024 LSLERLKKELVERNGGEPTFAQWAGAAGVDQKTLRKHLSHGRFCKDKMIKSNIRLVISIA 845
            L LE L++ L ER GG PTFAQWA AAGVDQ+ LR+ L++G  CKDKMI SNIRLVISIA
Sbjct: 243  LKLEGLREVLSERCGGSPTFAQWAAAAGVDQRELRRRLNYGILCKDKMITSNIRLVISIA 302

Query: 844  KNFQNAGLNLQDLVLEGCKGLVRGAEKFDASKGFKFSTYAHWWIKQAIRRSLSEQSRIIR 665
            KN+Q AG+NLQDLV EGC+GLVRGAEKFDASKGFKFSTYAHWWIKQA+R+SLS+QSR IR
Sbjct: 303  KNYQGAGMNLQDLVQEGCRGLVRGAEKFDASKGFKFSTYAHWWIKQAVRKSLSDQSRTIR 362

Query: 664  LPFHMVEANYRVREARKQHYSENKRYPDNEEVARITGLPLKRVEAVLLTRKAPISLDQKT 485
            LPFHMVEA YRV+EARKQ YSEN R+P+NEEVA  TGL +KR+ AVLLT KAP SLDQK 
Sbjct: 363  LPFHMVEATYRVKEARKQLYSENGRHPNNEEVAEATGLSMKRLHAVLLTPKAPRSLDQKF 422

Query: 484  GFNLNLKPSEIIADPEAETSEDILIKHFMKEELHKVLDTLNPREKQVMRLRFGLENGRMK 305
            G N NLKPSE+IADPEAET+ED+LIK FMKE+L KVLDTLNPRE+QV+R RFGLE+GRMK
Sbjct: 423  GINQNLKPSEVIADPEAETAEDLLIKKFMKEDLEKVLDTLNPRERQVVRWRFGLEDGRMK 482

Query: 304  TLQEIGELMGISRERVRQIESCAFXXXXXXXXXXXLQQYLIS 179
            TLQEIGELMG+SRER+RQIES AF           L QY I+
Sbjct: 483  TLQEIGELMGVSRERIRQIESSAFRKLKNKKRTKHLMQYAIT 524


>ref|XP_006878613.1| hypothetical protein AMTR_s00011p00258380 [Amborella trichopoda]
            gi|548831956|gb|ERM94758.1| hypothetical protein
            AMTR_s00011p00258380 [Amborella trichopoda]
          Length = 570

 Score =  446 bits (1148), Expect = e-122
 Identities = 227/319 (71%), Positives = 258/319 (80%)
 Frame = -2

Query: 1135 QPIDYSDPLRYFRGTTNXXXXXXXXXXXXXXEAIQHLLSLERLKKELVERNGGEPTFAQW 956
            Q IDYSDPLRY RGTTN              E IQ LL LE+L KEL ER GGEPTF QW
Sbjct: 251  QEIDYSDPLRYLRGTTNSTKLLTATEELELSEGIQDLLKLEKLHKELTERFGGEPTFVQW 310

Query: 955  AGAAGVDQKTLRKHLSHGRFCKDKMIKSNIRLVISIAKNFQNAGLNLQDLVLEGCKGLVR 776
            A AAG+DQK LR+ LS+G  CKDKMIKSNIRLVISIAKN+Q  GL++QDLV EGC+GLVR
Sbjct: 311  AAAAGIDQKALRRRLSYGTHCKDKMIKSNIRLVISIAKNYQGVGLSIQDLVQEGCRGLVR 370

Query: 775  GAEKFDASKGFKFSTYAHWWIKQAIRRSLSEQSRIIRLPFHMVEANYRVREARKQHYSEN 596
            GAEKFDASKGFKFSTYAHWWIKQA+R+SLS+QSR IRLPFHMV+A YRVREA KQ YSEN
Sbjct: 371  GAEKFDASKGFKFSTYAHWWIKQAVRKSLSDQSRTIRLPFHMVDATYRVREATKQLYSEN 430

Query: 595  KRYPDNEEVARITGLPLKRVEAVLLTRKAPISLDQKTGFNLNLKPSEIIADPEAETSEDI 416
             R+P++EEVA  TGL +KR+  VLLT KAP SLDQK G N NLKPSE+I+DPEAET+ED+
Sbjct: 431  GRHPNDEEVAEATGLSMKRLTTVLLTPKAPRSLDQKIGINQNLKPSEVISDPEAETAEDL 490

Query: 415  LIKHFMKEELHKVLDTLNPREKQVMRLRFGLENGRMKTLQEIGELMGISRERVRQIESCA 236
            L+K FMK++L KVL+TLNPREKQV+R RFGLE+GRMKTLQEIGELMG+SRER+RQIES A
Sbjct: 491  LMKQFMKQDLEKVLNTLNPREKQVVRWRFGLEDGRMKTLQEIGELMGVSRERIRQIESSA 550

Query: 235  FXXXXXXXXXXXLQQYLIS 179
            F           L+QYL+S
Sbjct: 551  FRKLKNKKRTKNLRQYLLS 569


>gb|EMJ05079.1| hypothetical protein PRUPE_ppa006657mg [Prunus persica]
          Length = 401

 Score =  443 bits (1140), Expect = e-121
 Identities = 224/319 (70%), Positives = 262/319 (82%)
 Frame = -2

Query: 1135 QPIDYSDPLRYFRGTTNXXXXXXXXXXXXXXEAIQHLLSLERLKKELVERNGGEPTFAQW 956
            Q +D+SDPLRY R TT+              E IQ LL LE+L++ELV+R GG+PT AQW
Sbjct: 83   QDVDHSDPLRYLRATTHTSRLLTANEEIELSEGIQELLKLEKLQEELVQRCGGQPTIAQW 142

Query: 955  AGAAGVDQKTLRKHLSHGRFCKDKMIKSNIRLVISIAKNFQNAGLNLQDLVLEGCKGLVR 776
            A AAGVDQKTLRK +++G  CKDKMIKSNIRLVISIAKN+Q AG+NLQDLV +GC+GLVR
Sbjct: 143  AAAAGVDQKTLRKRINYGILCKDKMIKSNIRLVISIAKNYQGAGMNLQDLVQQGCRGLVR 202

Query: 775  GAEKFDASKGFKFSTYAHWWIKQAIRRSLSEQSRIIRLPFHMVEANYRVREARKQHYSEN 596
            GAEKFDASKGFKFSTYAHWWIKQA+R+SLS+QSR IRLPFHMVEA YRVREA+KQ YS N
Sbjct: 203  GAEKFDASKGFKFSTYAHWWIKQAVRKSLSDQSRTIRLPFHMVEATYRVREAKKQLYSVN 262

Query: 595  KRYPDNEEVARITGLPLKRVEAVLLTRKAPISLDQKTGFNLNLKPSEIIADPEAETSEDI 416
             R+P++EEVA  TGL +KR+ AVLLT KAP SL+QK G N NLKPSE+IADPEAET+ED+
Sbjct: 263  GRHPNDEEVAEATGLSMKRLAAVLLTPKAPRSLEQKIGINQNLKPSEVIADPEAETAEDM 322

Query: 415  LIKHFMKEELHKVLDTLNPREKQVMRLRFGLENGRMKTLQEIGELMGISRERVRQIESCA 236
            L+K FMK++L KVLD+LN REKQV+R RFGLE+GRMKTLQEIGELMG+SRER+RQIESCA
Sbjct: 323  LMKKFMKQDLEKVLDSLNAREKQVVRWRFGLEDGRMKTLQEIGELMGVSRERIRQIESCA 382

Query: 235  FXXXXXXXXXXXLQQYLIS 179
            F           LQQY++S
Sbjct: 383  FRKLKNKKRTKHLQQYVVS 401


>ref|XP_006359117.1| PREDICTED: RNA polymerase sigma factor sigB-like [Solanum tuberosum]
          Length = 613

 Score =  442 bits (1136), Expect = e-121
 Identities = 260/524 (49%), Positives = 315/524 (60%), Gaps = 25/524 (4%)
 Frame = -2

Query: 1681 IPTLEAHSTYVS--RPLKYAATVGPPGKAS------------IVATLATESLLTCXXXXX 1544
            +P+ EA+   V+  RP  Y   VGPP +A+            IVA  A E++        
Sbjct: 100  LPSFEANPDSVAPDRPWTYTGAVGPPAEANTKPENSLASEEAIVAAAAAEAVALAKAALK 159

Query: 1543 XXXXXXXXXXXXXXXXXXXXXXXXAGKNTFAESHMSDLPSTSTRIPSQEM-------VRI 1385
                                     G+ T +E+  +   S     P +         +  
Sbjct: 160  GAQDAVMLVGYNNLNDSDNV-----GRGTLSEARTAPFESVHLAQPGETRRVGVCAELNG 214

Query: 1384 TETKWISHSHIVEPFKDNATKDPSESTDVSTLAFNEPNIQEIYNSIAVKSXXXXXXXXXX 1205
            +E KW   S   E   D+   +PS   ++  L        ++ N IAVKS          
Sbjct: 215  SEMKWTGSSLFRETLTDSDDLEPSPE-ELEILQ------SQLSNVIAVKSNRQTERKAKR 267

Query: 1204 XXXXEKPXXXXXXXXXXXXXXXI----QPIDYSDPLRYFRGTTNXXXXXXXXXXXXXXEA 1037
                EK                     Q +DYSDPLRY RGTT                 
Sbjct: 268  AKSVEKAAANVVTVKSGSTSRKKRASVQDVDYSDPLRYLRGTTCSSRLLTASEEQELSRG 327

Query: 1036 IQHLLSLERLKKELVERNGGEPTFAQWAGAAGVDQKTLRKHLSHGRFCKDKMIKSNIRLV 857
            IQ LL LERL+ EL ER GG+PTF QWA AAGVDQ TLRK L++G  CKDKMIKSN+RLV
Sbjct: 328  IQDLLKLERLQVELTERCGGQPTFTQWAAAAGVDQMTLRKRLNYGILCKDKMIKSNVRLV 387

Query: 856  ISIAKNFQNAGLNLQDLVLEGCKGLVRGAEKFDASKGFKFSTYAHWWIKQAIRRSLSEQS 677
            ISIAKN+Q  G+NLQDLV EGC+GLVRGAEKFDA+KGFKFSTYAHWWIKQA+R+SLS+QS
Sbjct: 388  ISIAKNYQGVGMNLQDLVQEGCRGLVRGAEKFDATKGFKFSTYAHWWIKQAVRKSLSDQS 447

Query: 676  RIIRLPFHMVEANYRVREARKQHYSENKRYPDNEEVARITGLPLKRVEAVLLTRKAPISL 497
            R+IRLPFHMVEA YRV+EARKQ  +EN R+P++ EVA   GL +KR+ AV+LT KAP SL
Sbjct: 448  RMIRLPFHMVEATYRVKEARKQLLTENGRHPNDAEVAEAAGLSMKRLAAVMLTPKAPRSL 507

Query: 496  DQKTGFNLNLKPSEIIADPEAETSEDILIKHFMKEELHKVLDTLNPREKQVMRLRFGLEN 317
            DQK GFN +LKPSE++ADPEAETSE+IL K FM+++L KVLDTLNPREKQV+R RFGLE+
Sbjct: 508  DQKIGFNESLKPSEVLADPEAETSEEILTKQFMRQDLEKVLDTLNPREKQVVRWRFGLED 567

Query: 316  GRMKTLQEIGELMGISRERVRQIESCAFXXXXXXXXXXXLQQYL 185
            GRMKTLQEIGELMG+SRER+RQIESCAF           LQQY+
Sbjct: 568  GRMKTLQEIGELMGVSRERIRQIESCAFRKLKNKKRTKFLQQYI 611


>ref|XP_004145011.1| PREDICTED: RNA polymerase sigma factor sigB-like [Cucumis sativus]
            gi|449473951|ref|XP_004154029.1| PREDICTED: RNA
            polymerase sigma factor sigB-like [Cucumis sativus]
          Length = 580

 Score =  441 bits (1133), Expect = e-121
 Identities = 222/319 (69%), Positives = 258/319 (80%)
 Frame = -2

Query: 1135 QPIDYSDPLRYFRGTTNXXXXXXXXXXXXXXEAIQHLLSLERLKKELVERNGGEPTFAQW 956
            Q +DYSDPLRY R TTN              E IQ LL LERL++EL ER G EPTFAQW
Sbjct: 262  QEVDYSDPLRYLRATTNTSRLLTATEELELSEGIQDLLKLERLQEELGERYGNEPTFAQW 321

Query: 955  AGAAGVDQKTLRKHLSHGRFCKDKMIKSNIRLVISIAKNFQNAGLNLQDLVLEGCKGLVR 776
            A AAGV+Q+TLRK L++G  CKDKMIKSNIRLVISIAKN+Q AG+NLQDLV EGC+GLVR
Sbjct: 322  AAAAGVNQRTLRKRLNYGTLCKDKMIKSNIRLVISIAKNYQGAGMNLQDLVQEGCRGLVR 381

Query: 775  GAEKFDASKGFKFSTYAHWWIKQAIRRSLSEQSRIIRLPFHMVEANYRVREARKQHYSEN 596
            GAEKFDASKGFKFSTYAHWWIKQA+R+ LS+QSR IRLPFHMVEA YRV+EARKQ   EN
Sbjct: 382  GAEKFDASKGFKFSTYAHWWIKQAVRKFLSDQSRTIRLPFHMVEATYRVKEARKQLLHEN 441

Query: 595  KRYPDNEEVARITGLPLKRVEAVLLTRKAPISLDQKTGFNLNLKPSEIIADPEAETSEDI 416
             R+PD++E+A   GL +KR+ AVL+T KAP SL+QK G N NLKPSE+I+DPEAET ED+
Sbjct: 442  GRHPDDKEIAEAAGLSMKRLAAVLMTPKAPRSLEQKIGINQNLKPSEVISDPEAETCEDM 501

Query: 415  LIKHFMKEELHKVLDTLNPREKQVMRLRFGLENGRMKTLQEIGELMGISRERVRQIESCA 236
            LIK FMK++L KVLD+LNPREKQV+R RFG+E+GRMKTLQEIGE+MG+SRER+RQIESCA
Sbjct: 502  LIKQFMKQDLEKVLDSLNPREKQVIRWRFGMEDGRMKTLQEIGEIMGVSRERIRQIESCA 561

Query: 235  FXXXXXXXXXXXLQQYLIS 179
            F           LQQY++S
Sbjct: 562  FRKLKNKKRTKHLQQYVMS 580


>ref|XP_004229543.1| PREDICTED: RNA polymerase sigma factor sigB-like [Solanum
            lycopersicum]
          Length = 613

 Score =  440 bits (1132), Expect = e-121
 Identities = 258/524 (49%), Positives = 315/524 (60%), Gaps = 25/524 (4%)
 Frame = -2

Query: 1681 IPTLEAHSTYVS--RPLKYAATVGPPGKAS------------IVATLATESLLTCXXXXX 1544
            +P+ EA+   V+  RP  Y   VGPP +A+            IVA  A E++        
Sbjct: 100  LPSFEANPDSVAPDRPWTYTGAVGPPAEANTKPEDSLASEEAIVAAAAAEAVALAKAALK 159

Query: 1543 XXXXXXXXXXXXXXXXXXXXXXXXAGKNTFAESHMSDLPSTSTRIPSQEM-------VRI 1385
                                     G+ T +E+  +   S     P +         +  
Sbjct: 160  GAQDAVMLVGYNNLKDSDNV-----GRGTLSEARTAPFESVHLAQPGETRGVGVCAELNG 214

Query: 1384 TETKWISHSHIVEPFKDNATKDPSESTDVSTLAFNEPNIQEIYNSIAVKSXXXXXXXXXX 1205
            +E KW   S   +   D+   +PS   ++  L        ++ N IAVKS          
Sbjct: 215  SEMKWTGSSLFRDTLTDSDDLEPSHE-ELEILQ------SQLSNVIAVKSNRQTERKARR 267

Query: 1204 XXXXEKPXXXXXXXXXXXXXXXI----QPIDYSDPLRYFRGTTNXXXXXXXXXXXXXXEA 1037
                E+                     Q +DYSDPLRY RGTT                 
Sbjct: 268  AKAVERAAANVVSVKSGSTSRKKRASVQDVDYSDPLRYLRGTTCSSRLLTASEEQELSRG 327

Query: 1036 IQHLLSLERLKKELVERNGGEPTFAQWAGAAGVDQKTLRKHLSHGRFCKDKMIKSNIRLV 857
            IQ LL LERL+ EL ER GG+PTF QWA AAGVDQ TLRK L++G  CKDKMIKSN+RLV
Sbjct: 328  IQDLLKLERLQVELTERCGGQPTFTQWAAAAGVDQMTLRKRLNYGILCKDKMIKSNVRLV 387

Query: 856  ISIAKNFQNAGLNLQDLVLEGCKGLVRGAEKFDASKGFKFSTYAHWWIKQAIRRSLSEQS 677
            ISIAKN+Q  G+NLQDLV EGC+GLVRGAEKFDA+KGFKFSTYAHWWIKQA+R+SLS+QS
Sbjct: 388  ISIAKNYQGVGMNLQDLVQEGCRGLVRGAEKFDATKGFKFSTYAHWWIKQAVRKSLSDQS 447

Query: 676  RIIRLPFHMVEANYRVREARKQHYSENKRYPDNEEVARITGLPLKRVEAVLLTRKAPISL 497
            R IRLPFHMVEA YRV+EARKQ  +EN R+P++ EVA  TGL +KR+ AV+LT KAP SL
Sbjct: 448  RTIRLPFHMVEATYRVKEARKQLLTENGRHPNDAEVAEATGLSMKRLAAVMLTPKAPRSL 507

Query: 496  DQKTGFNLNLKPSEIIADPEAETSEDILIKHFMKEELHKVLDTLNPREKQVMRLRFGLEN 317
            DQK GFN +LKPSE++ADP+AETSE+IL K FM+++L KVLDTLNPREKQV+R RFGLE+
Sbjct: 508  DQKVGFNESLKPSEVLADPDAETSEEILTKQFMRQDLEKVLDTLNPREKQVVRWRFGLED 567

Query: 316  GRMKTLQEIGELMGISRERVRQIESCAFXXXXXXXXXXXLQQYL 185
            GRMKTLQEIGELMG+SRER+RQIESCAF           LQQY+
Sbjct: 568  GRMKTLQEIGELMGVSRERIRQIESCAFRKLKNKKRTKFLQQYI 611


>ref|XP_002325455.2| hypothetical protein POPTR_0019s06100g [Populus trichocarpa]
            gi|550316911|gb|EEE99836.2| hypothetical protein
            POPTR_0019s06100g [Populus trichocarpa]
          Length = 555

 Score =  436 bits (1122), Expect = e-119
 Identities = 267/556 (48%), Positives = 334/556 (60%), Gaps = 25/556 (4%)
 Frame = -2

Query: 1771 LHSLHPKARDSVCSRTQCALSPPS------VVEIE--HIPTLEAHSTYVS--RPLKYAAT 1622
            L  L  K  +  C R QCALS  S      V+ +E   +P+LE+HS  ++  RP  Y   
Sbjct: 4    LWKLAAKNGEPFCFRAQCALSSASPSTSTAVLNLEKLRLPSLESHSDSIAANRPWTYIGG 63

Query: 1621 VGPPGKASIVATLATESLLTCXXXXXXXXXXXXXXXXXXXXXXXXXXXXXAGKNTFAESH 1442
            +GPP +     +LATE+ L                                 KN  + + 
Sbjct: 64   IGPPKEPLFGTSLATET-LIINDEAVIAAAAAEAVALARAAVKVAKDAAEMAKNYCSVNT 122

Query: 1441 MSDLPSTSTRIPSQEMVRITETK------WISHSHIVEPFKDNATKDPSESTDV-----S 1295
             + +P  ST      M  +   K       +S S      ++ +T+ P+E +D       
Sbjct: 123  ETKIPIASTADSFSSMWCLLTGKERADIIGVSFSAETGLREECSTQYPTEESDCFGPTHE 182

Query: 1294 TLAFNEPNIQEIYNSIAVKSXXXXXXXXXXXXXXEKPXXXXXXXXXXXXXXXI----QPI 1127
             LA  E  + E   SI V+S              EK                     Q +
Sbjct: 183  ELALLEKQLSE---SIVVRSKRQTQRKAKRARAAEKAAANFVFMKSGSACKKKRVPVQEV 239

Query: 1126 DYSDPLRYFRGTTNXXXXXXXXXXXXXXEAIQHLLSLERLKKELVERNGGEPTFAQWAGA 947
            D SDPLR+FRG +               E IQ LL LER+++EL ER GG+PTFAQWA A
Sbjct: 240  DQSDPLRFFRGASTSSRLLSATEEVELSEGIQDLLKLERIEEELKERFGGKPTFAQWAAA 299

Query: 946  AGVDQKTLRKHLSHGRFCKDKMIKSNIRLVISIAKNFQNAGLNLQDLVLEGCKGLVRGAE 767
            A VDQ TLRK L++   CKDKMIKSNIRLVISIAKN+Q AG+NLQDLV EGC+GLVRG E
Sbjct: 300  ARVDQITLRKRLNYAILCKDKMIKSNIRLVISIAKNYQGAGMNLQDLVQEGCRGLVRGVE 359

Query: 766  KFDASKGFKFSTYAHWWIKQAIRRSLSEQSRIIRLPFHMVEANYRVREARKQHYSENKRY 587
            KFDASKGFKFSTYAHWWI+QA+RRSLS+QSR IRLPFHMV+A YRV+EARKQ YSEN R+
Sbjct: 360  KFDASKGFKFSTYAHWWIRQAVRRSLSDQSRTIRLPFHMVDATYRVKEARKQFYSENGRH 419

Query: 586  PDNEEVARITGLPLKRVEAVLLTRKAPISLDQKTGFNLNLKPSEIIADPEAETSEDILIK 407
            PD++EVA  TGL +KR+ AVLLT KAP SLDQK GFN++LK SE+ ADPEAET+ED+L+K
Sbjct: 420  PDDKEVAEATGLSMKRLSAVLLTPKAPRSLDQKMGFNMDLKLSEVTADPEAETAEDLLMK 479

Query: 406  HFMKEELHKVLDTLNPREKQVMRLRFGLENGRMKTLQEIGELMGISRERVRQIESCAFXX 227
             FMK++L +VL++L+PRE QV+R RFG+E+GRMKTLQEIGELMG+SRER+RQIE  AF  
Sbjct: 480  EFMKKDLERVLESLSPRENQVIRWRFGMEDGRMKTLQEIGELMGVSRERIRQIELSAFRK 539

Query: 226  XXXXXXXXXLQQYLIS 179
                     L+QYL+S
Sbjct: 540  LKNKNRTKQLRQYLVS 555


>emb|CAD20831.2| sigma factor [Spinacia oleracea]
          Length = 575

 Score =  436 bits (1122), Expect = e-119
 Identities = 219/317 (69%), Positives = 253/317 (79%)
 Frame = -2

Query: 1135 QPIDYSDPLRYFRGTTNXXXXXXXXXXXXXXEAIQHLLSLERLKKELVERNGGEPTFAQW 956
            Q +DYSDPLRY RG TN                IQ LL LE+L  EL  R G  P+F QW
Sbjct: 257  QEVDYSDPLRYLRGATNSSRLLTSSEETELSAGIQDLLKLEKLHDELKVRFGKSPSFVQW 316

Query: 955  AGAAGVDQKTLRKHLSHGRFCKDKMIKSNIRLVISIAKNFQNAGLNLQDLVLEGCKGLVR 776
            A AAG+DQ+TLR+ L+HG FCKDKMIKSN+RLVISIAKN+Q +G+NLQDLV EGC+GLVR
Sbjct: 317  AAAAGIDQRTLRRRLNHGTFCKDKMIKSNVRLVISIAKNYQGSGMNLQDLVQEGCRGLVR 376

Query: 775  GAEKFDASKGFKFSTYAHWWIKQAIRRSLSEQSRIIRLPFHMVEANYRVREARKQHYSEN 596
            GAEKFDASKGFKFSTYAHWWIKQA+R+SLS+QSR IRLPFHMVEA YRV+EARKQ  SEN
Sbjct: 377  GAEKFDASKGFKFSTYAHWWIKQAVRKSLSDQSRTIRLPFHMVEATYRVKEARKQLLSEN 436

Query: 595  KRYPDNEEVARITGLPLKRVEAVLLTRKAPISLDQKTGFNLNLKPSEIIADPEAETSEDI 416
             + P+NEEVA  TGL +KR+ AVL+T KAP SLDQK GFN+NLKPSE+IADPEAET+ED+
Sbjct: 437  GKQPNNEEVAEATGLSMKRLTAVLMTPKAPRSLDQKIGFNMNLKPSEVIADPEAETAEDL 496

Query: 415  LIKHFMKEELHKVLDTLNPREKQVMRLRFGLENGRMKTLQEIGELMGISRERVRQIESCA 236
            L K FM+++L KVLDTL+ REKQV+R RFGLE+GRMKTLQEIGELMG+SRER+RQIES A
Sbjct: 497  LTKQFMRQDLEKVLDTLSSREKQVIRWRFGLEDGRMKTLQEIGELMGVSRERIRQIESSA 556

Query: 235  FXXXXXXXXXXXLQQYL 185
            F           LQQY+
Sbjct: 557  FRKLQNKKKTINLQQYM 573


>ref|NP_172330.1| RNA polymerase sigma subunit 2 [Arabidopsis thaliana]
            gi|75219074|sp|O22056.2|SIGB_ARATH RecName: Full=RNA
            polymerase sigma factor sigB; Short=Sigma factor B;
            Short=Sigma-B; AltName: Full=Protein ABERRANT CHLOROPLAST
            1; AltName: Full=RNA polymerase sigma factor sig1;
            Short=Atsig1; Short=Sigma factor 1; AltName: Full=RNA
            polymerase sigma factor sig2; Short=Atsig2; Short=Sigma
            factor 2; AltName: Full=RNA polymerase sigma factor sigA;
            Short=Sigma factor A; Short=Sigma-A; Flags: Precursor
            gi|6664315|gb|AAF22897.1|AC006932_14 T27G7.22
            [Arabidopsis thaliana]
            gi|9802550|gb|AAF99752.1|AC003981_2 F22O13.2 [Arabidopsis
            thaliana] gi|2443357|dbj|BAA22427.1| SigB [Arabidopsis
            thaliana] gi|2597831|emb|CAA75584.1| sigma factor
            [Arabidopsis thaliana] gi|2879922|dbj|BAA24825.1| plastid
            RNA polymerase sigma-subunit [Arabidopsis thaliana]
            gi|5478446|dbj|BAA82449.1| sigma factor SigB [Arabidopsis
            thaliana] gi|133778838|gb|ABO38759.1| At1g08540
            [Arabidopsis thaliana] gi|332190182|gb|AEE28303.1| RNA
            polymerase sigma subunit 2 [Arabidopsis thaliana]
          Length = 572

 Score =  436 bits (1120), Expect = e-119
 Identities = 269/573 (46%), Positives = 332/573 (57%), Gaps = 28/573 (4%)
 Frame = -2

Query: 1813 MSCLAAPQFKWPSPLHSLH-------PKA-RDSVCSRTQCALSPP-----SVVEIE--HI 1679
            MS    PQFK P    S+H       PK  + SV  + QCA+S       S++++    +
Sbjct: 1    MSSCLLPQFKCPPDSFSIHFRTSFCAPKHNKGSVFFQPQCAVSTSPALLTSMLDVAKLRL 60

Query: 1678 PTLEAHSTYV--SRPLKYAATVGPPGKASIVATLATESLLTCXXXXXXXXXXXXXXXXXX 1505
            P+ +  S  +   R   Y    GP  +A  +  LA+E+LLT                   
Sbjct: 61   PSFDTDSDSLISDRQWTYTRPDGPSTEAKYLEALASETLLTSDEAVVVAAAAEAVALARA 120

Query: 1504 XXXXXXXXXXXAGKNT--FAESHMSDLPSTSTRIPSQEMVRITETKWISHSHIVEPFKDN 1331
                          N      S  +D  S   +   +E   I     +S + IV    D 
Sbjct: 121  AVKVAKDATLFKNSNNTNLLTSSTADKRSKWDQFTEKERAGILGHLAVSDNGIVS---DK 177

Query: 1330 ATKDPSESTDVSTLAFNEPNIQEIYN-----SIAVKSXXXXXXXXXXXXXXEKPXXXXXX 1166
             T   S    +  L   +    E+       S+AV+S              EK       
Sbjct: 178  ITASASNKESIGDLESEKQEEVELLEEQPSVSLAVRSTRQTERKARRAKGLEKTASGIPS 237

Query: 1165 XXXXXXXXXI----QPIDYSDPLRYFRGTTNXXXXXXXXXXXXXXEAIQHLLSLERLKKE 998
                          Q +D++DPLRY R TT+                IQ LL LERL+ E
Sbjct: 238  VKTGSSPKKKRLVAQEVDHNDPLRYLRMTTSSSKLLTVREEHELSAGIQDLLKLERLQTE 297

Query: 997  LVERNGGEPTFAQWAGAAGVDQKTLRKHLSHGRFCKDKMIKSNIRLVISIAKNFQNAGLN 818
            L ER+G +PTFAQWA AAGVDQK+LR+ + HG  CKDKMIKSNIRLVISIAKN+Q AG+N
Sbjct: 298  LTERSGRQPTFAQWASAAGVDQKSLRQRIHHGTLCKDKMIKSNIRLVISIAKNYQGAGMN 357

Query: 817  LQDLVLEGCKGLVRGAEKFDASKGFKFSTYAHWWIKQAIRRSLSEQSRIIRLPFHMVEAN 638
            LQDLV EGC+GLVRGAEKFDA+KGFKFSTYAHWWIKQA+R+SLS+QSR+IRLPFHMVEA 
Sbjct: 358  LQDLVQEGCRGLVRGAEKFDATKGFKFSTYAHWWIKQAVRKSLSDQSRMIRLPFHMVEAT 417

Query: 637  YRVREARKQHYSENKRYPDNEEVARITGLPLKRVEAVLLTRKAPISLDQKTGFNLNLKPS 458
            YRV+EARKQ YSE  ++P NEE+A  TGL +KR+ AVLL+ K P SLDQK G N NLKPS
Sbjct: 418  YRVKEARKQLYSETGKHPKNEEIAEATGLSMKRLMAVLLSPKPPRSLDQKIGMNQNLKPS 477

Query: 457  EIIADPEAETSEDILIKHFMKEELHKVLDTLNPREKQVMRLRFGLENGRMKTLQEIGELM 278
            E+IADPEA TSEDILIK FM+++L KVLD+L  REKQV+R RFG+E+GRMKTLQEIGE+M
Sbjct: 478  EVIADPEAVTSEDILIKEFMRQDLDKVLDSLGTREKQVIRWRFGMEDGRMKTLQEIGEMM 537

Query: 277  GISRERVRQIESCAFXXXXXXXXXXXLQQYLIS 179
            G+SRERVRQIES AF           LQQYL++
Sbjct: 538  GVSRERVRQIESSAFRKLKNKKRNNHLQQYLVA 570


>ref|XP_004500709.1| PREDICTED: RNA polymerase sigma factor sigB-like [Cicer arietinum]
          Length = 564

 Score =  434 bits (1117), Expect = e-119
 Identities = 272/580 (46%), Positives = 331/580 (57%), Gaps = 35/580 (6%)
 Frame = -2

Query: 1813 MSCLAAPQF-------KWPSPLHSLH------PKARDSVCSRTQCALS--PPSVVEIEHI 1679
            MSCL  PQF       + P P H  H       K R ++  R QC LS  PPS   +   
Sbjct: 1    MSCLL-PQFNCHPDTFRTPLPTHRHHLILLLQTKTRHNLYFRPQCILSAAPPSTSALIDF 59

Query: 1678 PTLEAHSTYVSRPLKYAATVGPPGKASIVATLATESLLTCXXXXXXXXXXXXXXXXXXXX 1499
                A +   S    Y A      +A   AT + ESLLT                     
Sbjct: 60   DVAAAAAAANSPNWPYVA------QAHFKATSSAESLLTNEEAVIAAAASEALTLAKAAA 113

Query: 1498 XXXXXXXXXAGKNTFAESHM-SDLPSTSTRIPSQEMVRITETKWISHSHIVEPFKDNAT- 1325
                       K    E+   S LPST    P   ++     KW+ H    E      + 
Sbjct: 114  KVAKDAALLVKKKPLQEAGFKSQLPST----PDNFLL-----KWVQHMEAQEAVAGGGSV 164

Query: 1324 -------KDPSESTDVSTLAFNEPNIQEIYNS-------IAVKSXXXXXXXXXXXXXXEK 1187
                   +D   S +   L   EP  +E+ NS       I  +S               K
Sbjct: 165  SNGAEILEDVDISPNQEELDEEEPTCEELENSEEQLSDSIDARSGRQTERKARRVRASGK 224

Query: 1186 PXXXXXXXXXXXXXXXI----QPIDYSDPLRYFRGTTNXXXXXXXXXXXXXXEAIQHLLS 1019
                                 Q +DYSDPLRY R TT               E IQ L+ 
Sbjct: 225  AATNIVSFKSGSTSRKRRVRTQEVDYSDPLRYLRTTTRTTRLLTPAEEIKYSEGIQDLIK 284

Query: 1018 LERLKKELVERNGGEPTFAQWAGAAGVDQKTLRKHLSHGRFCKDKMIKSNIRLVISIAKN 839
            LE+L+ +LVE+ GGEPTF QWA  AGVDQKTLRK L++G FCK+KMIKSNIRLVIS+AKN
Sbjct: 285  LEKLQDDLVEKCGGEPTFGQWATLAGVDQKTLRKRLNYGVFCKEKMIKSNIRLVISVAKN 344

Query: 838  FQNAGLNLQDLVLEGCKGLVRGAEKFDASKGFKFSTYAHWWIKQAIRRSLSEQSRIIRLP 659
            +Q +G++LQDLV EGC+GLVRGAEK+DASKGFKFSTYAHWWIKQA+R++LS QSR IRLP
Sbjct: 345  YQGSGMSLQDLVQEGCRGLVRGAEKYDASKGFKFSTYAHWWIKQAVRKALSVQSRTIRLP 404

Query: 658  FHMVEANYRVREARKQHYSENKRYPDNEEVARITGLPLKRVEAVLLTRKAPISLDQKTGF 479
            FHMV A Y+V+EARKQ YSEN R PD+EEVA  TGL +KR+ AVLLT KAP SL+QK G 
Sbjct: 405  FHMVGATYKVKEARKQLYSENGRQPDDEEVAEATGLSMKRLSAVLLTPKAPRSLEQKIGI 464

Query: 478  NLNLKPSEIIADPEAETSEDILIKHFMKEELHKVLDTLNPREKQVMRLRFGLENGRMKTL 299
            N +LKPSE++ADPEAET+E+ LIK FMK++L KVLD+LNPRE+QV+R RFG+++GRMKTL
Sbjct: 465  NQSLKPSEVLADPEAETAEEQLIKQFMKKDLEKVLDSLNPRERQVIRWRFGMDDGRMKTL 524

Query: 298  QEIGELMGISRERVRQIESCAFXXXXXXXXXXXLQQYLIS 179
            QEIGE+MG+SRER+RQIESCAF           LQQYL+S
Sbjct: 525  QEIGEMMGVSRERIRQIESCAFRKLKNKKRAKHLQQYLVS 564


>ref|XP_006307126.1| hypothetical protein CARUB_v10008711mg [Capsella rubella]
            gi|482575837|gb|EOA40024.1| hypothetical protein
            CARUB_v10008711mg [Capsella rubella]
          Length = 571

 Score =  434 bits (1115), Expect = e-119
 Identities = 221/319 (69%), Positives = 257/319 (80%)
 Frame = -2

Query: 1135 QPIDYSDPLRYFRGTTNXXXXXXXXXXXXXXEAIQHLLSLERLKKELVERNGGEPTFAQW 956
            Q +D++DPLRY R TT+                IQ LL LERL+ EL ER G +PTF+QW
Sbjct: 251  QEVDHNDPLRYLRVTTSSSKLLTVREEHELSAGIQDLLKLERLQAELTERCGRQPTFSQW 310

Query: 955  AGAAGVDQKTLRKHLSHGRFCKDKMIKSNIRLVISIAKNFQNAGLNLQDLVLEGCKGLVR 776
            A AAGVDQK+LRK +++G  CKDKMIKSNIRLVISIAKN+Q AG+NLQDLV EGC+GLVR
Sbjct: 311  ASAAGVDQKSLRKRINYGTQCKDKMIKSNIRLVISIAKNYQGAGMNLQDLVQEGCRGLVR 370

Query: 775  GAEKFDASKGFKFSTYAHWWIKQAIRRSLSEQSRIIRLPFHMVEANYRVREARKQHYSEN 596
            GAEKFDA+KGFKFSTYAHWWIKQA+R+SLS+QSR+IRLPFHMVEA YRV+EARKQ Y+E 
Sbjct: 371  GAEKFDATKGFKFSTYAHWWIKQAVRKSLSDQSRMIRLPFHMVEATYRVKEARKQLYTEK 430

Query: 595  KRYPDNEEVARITGLPLKRVEAVLLTRKAPISLDQKTGFNLNLKPSEIIADPEAETSEDI 416
             R+P+NEEVA  TGL +KR+ AVLL+ K P SLDQK G N NLKPSE+IADPEAETSEDI
Sbjct: 431  GRHPENEEVAEATGLSMKRLMAVLLSPKPPRSLDQKIGMNQNLKPSEVIADPEAETSEDI 490

Query: 415  LIKHFMKEELHKVLDTLNPREKQVMRLRFGLENGRMKTLQEIGELMGISRERVRQIESCA 236
            LIK FM+E+L KVLD+L  REKQV+R RFG+E+GRMKTLQEIGELMG+SRERVRQIES A
Sbjct: 491  LIKQFMREDLDKVLDSLGTREKQVIRWRFGMEDGRMKTLQEIGELMGVSRERVRQIESSA 550

Query: 235  FXXXXXXXXXXXLQQYLIS 179
            F           LQQYL++
Sbjct: 551  FRKLKNKKRSNHLQQYLVA 569


>ref|XP_002889701.1| hypothetical protein ARALYDRAFT_470915 [Arabidopsis lyrata subsp.
            lyrata] gi|297335543|gb|EFH65960.1| hypothetical protein
            ARALYDRAFT_470915 [Arabidopsis lyrata subsp. lyrata]
          Length = 572

 Score =  431 bits (1109), Expect = e-118
 Identities = 219/319 (68%), Positives = 254/319 (79%)
 Frame = -2

Query: 1135 QPIDYSDPLRYFRGTTNXXXXXXXXXXXXXXEAIQHLLSLERLKKELVERNGGEPTFAQW 956
            Q +D++DPLRY R TT+                IQ LL LERL+ EL ER G +PTFAQW
Sbjct: 252  QEVDHNDPLRYLRMTTSSSKLLTVREEHELSAGIQDLLKLERLQTELTERCGRQPTFAQW 311

Query: 955  AGAAGVDQKTLRKHLSHGRFCKDKMIKSNIRLVISIAKNFQNAGLNLQDLVLEGCKGLVR 776
            A AAGVDQK+LRK + HG  CKDKMIKSNIRLVISIAKN+Q AG+NLQDLV EGC+GLVR
Sbjct: 312  ASAAGVDQKSLRKRIHHGTLCKDKMIKSNIRLVISIAKNYQGAGMNLQDLVQEGCRGLVR 371

Query: 775  GAEKFDASKGFKFSTYAHWWIKQAIRRSLSEQSRIIRLPFHMVEANYRVREARKQHYSEN 596
            GAEKFDA+KGFKFSTYAHWWIKQA+R+SLS+QSR+IRLPFHMVEA YRV+EARKQ YSE 
Sbjct: 372  GAEKFDATKGFKFSTYAHWWIKQAVRKSLSDQSRMIRLPFHMVEATYRVKEARKQLYSET 431

Query: 595  KRYPDNEEVARITGLPLKRVEAVLLTRKAPISLDQKTGFNLNLKPSEIIADPEAETSEDI 416
             ++P NEE+A  TGL +KR+ AVLL+ K P SLDQK G N NLKPSE+IADPEA TSEDI
Sbjct: 432  GKHPKNEEIAEATGLSMKRLMAVLLSPKPPRSLDQKIGMNQNLKPSEVIADPEAVTSEDI 491

Query: 415  LIKHFMKEELHKVLDTLNPREKQVMRLRFGLENGRMKTLQEIGELMGISRERVRQIESCA 236
            LIK FM+++L KVLD+L  REKQV+R RFG+E+GRMKTLQEIGE+MG+SRERVRQIES A
Sbjct: 492  LIKEFMRQDLDKVLDSLGTREKQVIRWRFGMEDGRMKTLQEIGEMMGVSRERVRQIESSA 551

Query: 235  FXXXXXXXXXXXLQQYLIS 179
            F           LQQYL++
Sbjct: 552  FRKLKNKKRSNHLQQYLVA 570