BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Zingiber24_contig00014821
         (381 letters)

Database: ./nr 
           37,332,560 sequences; 13,225,080,153 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

ref|NP_178143.1| pentatricopeptide repeat-containing protein [Ar...    86   7e-15
gb|EOY08858.1| Pentatricopeptide repeat-containing protein isofo...    85   9e-15
gb|EOY08857.1| Pentatricopeptide repeat-containing protein isofo...    85   9e-15
ref|XP_006430551.1| hypothetical protein CICLE_v10011296mg [Citr...    84   2e-14
ref|XP_004499885.1| PREDICTED: pentatricopeptide repeat-containi...    84   3e-14
ref|XP_004493398.1| PREDICTED: pentatricopeptide repeat-containi...    82   6e-14
ref|XP_004493397.1| PREDICTED: pentatricopeptide repeat-containi...    82   6e-14
ref|XP_006482077.1| PREDICTED: pentatricopeptide repeat-containi...    82   7e-14
ref|XP_004967670.1| PREDICTED: pentatricopeptide repeat-containi...    82   7e-14
gb|ESW17930.1| hypothetical protein PHAVU_007G280400g [Phaseolus...    80   3e-13
ref|XP_004162629.1| PREDICTED: pentatricopeptide repeat-containi...    79   5e-13
ref|XP_002889301.1| hypothetical protein ARALYDRAFT_477224 [Arab...    79   5e-13
ref|XP_004303594.1| PREDICTED: pentatricopeptide repeat-containi...    79   6e-13
ref|XP_003590264.1| Pentatricopeptide repeat-containing protein ...    78   1e-12
ref|XP_003590239.1| Pentatricopeptide repeat-containing protein ...    78   1e-12
ref|XP_003567340.1| PREDICTED: pentatricopeptide repeat-containi...    77   2e-12
ref|XP_004162628.1| PREDICTED: pentatricopeptide repeat-containi...    77   3e-12
gb|AFW79512.1| DNA-binding protein [Zea mays]                          76   4e-12
gb|ADN33878.1| DNA-binding protein [Cucumis melo subsp. melo]          76   4e-12
ref|NP_001147602.1| DNA-binding protein [Zea mays] gi|195612448|...    76   4e-12

>ref|NP_178143.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
           gi|42572199|ref|NP_974190.1| pentatricopeptide
           repeat-containing protein [Arabidopsis thaliana]
           gi|145327755|ref|NP_001077853.1| pentatricopeptide
           repeat-containing protein [Arabidopsis thaliana]
           gi|75262222|sp|Q9C977.1|PP135_ARATH RecName:
           Full=Pentatricopeptide repeat-containing protein
           At1g80270, mitochondrial; Flags: Precursor
           gi|12324975|gb|AAG52431.1|AC018848_2 hypothetical
           protein; 8785-10851 [Arabidopsis thaliana]
           gi|17064898|gb|AAL32603.1| Unknown protein [Arabidopsis
           thaliana] gi|20259918|gb|AAM13306.1| unknown protein
           [Arabidopsis thaliana] gi|332198258|gb|AEE36379.1|
           pentatricopeptide repeat-containing protein [Arabidopsis
           thaliana] gi|332198259|gb|AEE36380.1| pentatricopeptide
           repeat-containing protein [Arabidopsis thaliana]
           gi|332198260|gb|AEE36381.1| pentatricopeptide
           repeat-containing protein [Arabidopsis thaliana]
          Length = 596

 Score = 85.5 bits (210), Expect = 7e-15
 Identities = 46/96 (47%), Positives = 60/96 (62%)
 Frame = -3

Query: 289 LDLVDVKASEGGAKKGWSRLSHSPIFQLIMDTPRNSLTSALDKYAEEGKSLGSGEISIAM 110
           LDL++   S    +K       S +F+ I+  P  S+ SALDK+ EEG  +   EI+ AM
Sbjct: 113 LDLIETDVSRKTVEK-----KQSELFKTIVSAPGLSIGSALDKWVEEGNEITRVEIAKAM 167

Query: 109 LNLRKRRLYSMALQFVEWLEARKKIELTDRDYVSHL 2
           L LR+RR+Y  ALQ  EWLEA KKIE+T+RDY S L
Sbjct: 168 LQLRRRRMYGRALQMSEWLEANKKIEMTERDYASRL 203


>gb|EOY08858.1| Pentatricopeptide repeat-containing protein isoform 2, partial
           [Theobroma cacao]
          Length = 621

 Score = 85.1 bits (209), Expect = 9e-15
 Identities = 42/83 (50%), Positives = 56/83 (67%)
 Frame = -3

Query: 250 KKGWSRLSHSPIFQLIMDTPRNSLTSALDKYAEEGKSLGSGEISIAMLNLRKRRLYSMAL 71
           KK  +R   S +F+ ++  P  S+   LDK+ EEGK+    EIS+AMLNLRKRR+Y  AL
Sbjct: 146 KKSSTRRIVSELFKAVIAAPGLSVHKVLDKWLEEGKAFNRTEISVAMLNLRKRRMYGRAL 205

Query: 70  QFVEWLEARKKIELTDRDYVSHL 2
           Q  EWLEA K+++ T+RDY S L
Sbjct: 206 QLSEWLEANKQLDFTERDYASRL 228


>gb|EOY08857.1| Pentatricopeptide repeat-containing protein isoform 1 [Theobroma
           cacao]
          Length = 623

 Score = 85.1 bits (209), Expect = 9e-15
 Identities = 42/83 (50%), Positives = 56/83 (67%)
 Frame = -3

Query: 250 KKGWSRLSHSPIFQLIMDTPRNSLTSALDKYAEEGKSLGSGEISIAMLNLRKRRLYSMAL 71
           KK  +R   S +F+ ++  P  S+   LDK+ EEGK+    EIS+AMLNLRKRR+Y  AL
Sbjct: 148 KKSSTRRIVSELFKAVIAAPGLSVHKVLDKWLEEGKAFNRTEISVAMLNLRKRRMYGRAL 207

Query: 70  QFVEWLEARKKIELTDRDYVSHL 2
           Q  EWLEA K+++ T+RDY S L
Sbjct: 208 QLSEWLEANKQLDFTERDYASRL 230


>ref|XP_006430551.1| hypothetical protein CICLE_v10011296mg [Citrus clementina]
           gi|557532608|gb|ESR43791.1| hypothetical protein
           CICLE_v10011296mg [Citrus clementina]
          Length = 623

 Score = 84.0 bits (206), Expect = 2e-14
 Identities = 43/88 (48%), Positives = 54/88 (61%)
 Frame = -3

Query: 265 SEGGAKKGWSRLSHSPIFQLIMDTPRNSLTSALDKYAEEGKSLGSGEISIAMLNLRKRRL 86
           +E   K   S+   S +F+ IMD P  S+ S L KYAEEG  L   EI++AM NLR RR+
Sbjct: 143 TEASRKTTPSKRKFSKLFKAIMDAPDISIHSTLTKYAEEGNDLSRAEIALAMANLRTRRM 202

Query: 85  YSMALQFVEWLEARKKIELTDRDYVSHL 2
           Y  ALQ  EWLE  KK++  +RDY S L
Sbjct: 203 YGKALQLSEWLETNKKLDFIERDYASCL 230


>ref|XP_004499885.1| PREDICTED: pentatricopeptide repeat-containing protein At1g80270,
           mitochondrial-like [Cicer arietinum]
          Length = 615

 Score = 83.6 bits (205), Expect = 3e-14
 Identities = 44/99 (44%), Positives = 67/99 (67%)
 Frame = -3

Query: 298 YGSLDLVDVKASEGGAKKGWSRLSHSPIFQLIMDTPRNSLTSALDKYAEEGKSLGSGEIS 119
           +  L+L D + S+  AK   SR   S +F+ +++ P   + SAL+K+ E+GK L   EI+
Sbjct: 128 HNELELSDTE-SDLDAKNSESRNKRSELFKAVVNGP---VDSALNKWVEKGKELSRQEIT 183

Query: 118 IAMLNLRKRRLYSMALQFVEWLEARKKIELTDRDYVSHL 2
           +A+LNLRKR++Y  ALQ +EWLE+ KK+E T++DY S L
Sbjct: 184 LALLNLRKRKMYGRALQVLEWLESNKKLEFTEKDYASKL 222


>ref|XP_004493398.1| PREDICTED: pentatricopeptide repeat-containing protein At1g80270,
           mitochondrial-like isoform X2 [Cicer arietinum]
          Length = 603

 Score = 82.4 bits (202), Expect = 6e-14
 Identities = 41/83 (49%), Positives = 54/83 (65%)
 Frame = -3

Query: 250 KKGWSRLSHSPIFQLIMDTPRNSLTSALDKYAEEGKSLGSGEISIAMLNLRKRRLYSMAL 71
           KK   +   S +F+ IMD P  S+ +ALDK+ EEGK L   EIS+ M NLR+R++Y  AL
Sbjct: 129 KKSSQKRVLSELFKDIMDAPGLSVRTALDKWVEEGKELSREEISLTMANLRRRKMYGRAL 188

Query: 70  QFVEWLEARKKIELTDRDYVSHL 2
           Q  EWLE++K +E  D DY S L
Sbjct: 189 QLSEWLESKKHLEFVDSDYASRL 211


>ref|XP_004493397.1| PREDICTED: pentatricopeptide repeat-containing protein At1g80270,
           mitochondrial-like isoform X1 [Cicer arietinum]
          Length = 609

 Score = 82.4 bits (202), Expect = 6e-14
 Identities = 41/83 (49%), Positives = 54/83 (65%)
 Frame = -3

Query: 250 KKGWSRLSHSPIFQLIMDTPRNSLTSALDKYAEEGKSLGSGEISIAMLNLRKRRLYSMAL 71
           KK   +   S +F+ IMD P  S+ +ALDK+ EEGK L   EIS+ M NLR+R++Y  AL
Sbjct: 135 KKSSQKRVLSELFKDIMDAPGLSVRTALDKWVEEGKELSREEISLTMANLRRRKMYGRAL 194

Query: 70  QFVEWLEARKKIELTDRDYVSHL 2
           Q  EWLE++K +E  D DY S L
Sbjct: 195 QLSEWLESKKHLEFVDSDYASRL 217


>ref|XP_006482077.1| PREDICTED: pentatricopeptide repeat-containing protein At1g80270,
           mitochondrial-like [Citrus sinensis]
          Length = 623

 Score = 82.0 bits (201), Expect = 7e-14
 Identities = 43/88 (48%), Positives = 52/88 (59%)
 Frame = -3

Query: 265 SEGGAKKGWSRLSHSPIFQLIMDTPRNSLTSALDKYAEEGKSLGSGEISIAMLNLRKRRL 86
           +E   K   S+   S +F+ IMD P  S  S L  Y EEG  L   EIS+AM NLR RR+
Sbjct: 143 TEPSRKTTPSKRKLSKLFKAIMDAPDISNNSTLTTYVEEGNDLSRAEISLAMANLRTRRM 202

Query: 85  YSMALQFVEWLEARKKIELTDRDYVSHL 2
           Y  ALQF EWLE  KK++  +RDY S L
Sbjct: 203 YGKALQFSEWLETNKKLDFIERDYASRL 230


>ref|XP_004967670.1| PREDICTED: pentatricopeptide repeat-containing protein At1g80270,
           mitochondrial-like [Setaria italica]
          Length = 613

 Score = 82.0 bits (201), Expect = 7e-14
 Identities = 40/100 (40%), Positives = 62/100 (62%)
 Frame = -3

Query: 301 AYGSLDLVDVKASEGGAKKGWSRLSHSPIFQLIMDTPRNSLTSALDKYAEEGKSLGSGEI 122
           A   + L DV A     K+  +R+S S + + +++TPR+ +T AL+K+A +G  L  GE+
Sbjct: 120 AADEIGLPDVDADAKPEKEHMNRVSDSILLKAMLETPRHEVTKALEKWANDGNVLDRGEL 179

Query: 121 SIAMLNLRKRRLYSMALQFVEWLEARKKIELTDRDYVSHL 2
              +LNLRKRR +  ALQ +EW+E  K +E  +RDY S +
Sbjct: 180 FFVLLNLRKRRWFGKALQLLEWVEESKLLEFVERDYASRV 219


>gb|ESW17930.1| hypothetical protein PHAVU_007G280400g [Phaseolus vulgaris]
          Length = 602

 Score = 80.1 bits (196), Expect = 3e-13
 Identities = 41/99 (41%), Positives = 62/99 (62%)
 Frame = -3

Query: 298 YGSLDLVDVKASEGGAKKGWSRLSHSPIFQLIMDTPRNSLTSALDKYAEEGKSLGSGEIS 119
           +  L+L D + ++   KK   R + S +F+ I++ P  S+ SAL+K+ E+GK L   EI 
Sbjct: 113 HDELELSDAE-TDPTKKKSPGRQTQSELFKAIVNAPGLSIDSALNKWVEQGKELSRKEIM 171

Query: 118 IAMLNLRKRRLYSMALQFVEWLEARKKIELTDRDYVSHL 2
           +AM NLRKR++Y  A Q  +WLE+ KK+E  + DY S L
Sbjct: 172 LAMRNLRKRKMYGRAFQLFQWLESNKKLEFVESDYASKL 210


>ref|XP_004162629.1| PREDICTED: pentatricopeptide repeat-containing protein At1g80270,
           mitochondrial-like [Cucumis sativus]
          Length = 608

 Score = 79.3 bits (194), Expect = 5e-13
 Identities = 42/84 (50%), Positives = 53/84 (63%)
 Frame = -3

Query: 253 AKKGWSRLSHSPIFQLIMDTPRNSLTSALDKYAEEGKSLGSGEISIAMLNLRKRRLYSMA 74
           A+K  S+   S +F  I      S+ SALDK+  EGK L   EIS+AML+LRKRR++  A
Sbjct: 132 AEKKSSKWRPSELFNAIWKASVLSVPSALDKWVSEGKDLSRAEISLAMLHLRKRRMFGKA 191

Query: 73  LQFVEWLEARKKIELTDRDYVSHL 2
           LQF EWLEA  ++E   RDY S L
Sbjct: 192 LQFSEWLEANGQLEFNQRDYASRL 215


>ref|XP_002889301.1| hypothetical protein ARALYDRAFT_477224 [Arabidopsis lyrata subsp.
           lyrata] gi|297335142|gb|EFH65560.1| hypothetical protein
           ARALYDRAFT_477224 [Arabidopsis lyrata subsp. lyrata]
          Length = 597

 Score = 79.3 bits (194), Expect = 5e-13
 Identities = 39/74 (52%), Positives = 51/74 (68%)
 Frame = -3

Query: 223 SPIFQLIMDTPRNSLTSALDKYAEEGKSLGSGEISIAMLNLRKRRLYSMALQFVEWLEAR 44
           S +F+ I+  P  S+ SALDK+ EEG  +   E++ AML LR+RR+Y  ALQ  EWLEA 
Sbjct: 131 SELFKTIVSAPGLSIGSALDKWVEEGNEITRVEVAKAMLQLRRRRMYGRALQLSEWLEAN 190

Query: 43  KKIELTDRDYVSHL 2
           KKIE+ +RDY S L
Sbjct: 191 KKIEMNERDYSSRL 204


>ref|XP_004303594.1| PREDICTED: pentatricopeptide repeat-containing protein At1g80270,
           mitochondrial-like [Fragaria vesca subsp. vesca]
          Length = 625

 Score = 79.0 bits (193), Expect = 6e-13
 Identities = 37/74 (50%), Positives = 52/74 (70%)
 Frame = -3

Query: 223 SPIFQLIMDTPRNSLTSALDKYAEEGKSLGSGEISIAMLNLRKRRLYSMALQFVEWLEAR 44
           S +F+ I++ P  S+ SALDK+ +EG  L   EIS+  +NLR+RR++  ALQ  EWLEA 
Sbjct: 159 SALFKAILEFPGFSVHSALDKWVKEGNDLSRAEISLTKINLRRRRMFGRALQLSEWLEAH 218

Query: 43  KKIELTDRDYVSHL 2
           K+IE ++RDY S L
Sbjct: 219 KQIEFSERDYASRL 232


>ref|XP_003590264.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
           gi|355479312|gb|AES60515.1| Pentatricopeptide
           repeat-containing protein [Medicago truncatula]
          Length = 557

 Score = 77.8 bits (190), Expect = 1e-12
 Identities = 39/96 (40%), Positives = 63/96 (65%)
 Frame = -3

Query: 289 LDLVDVKASEGGAKKGWSRLSHSPIFQLIMDTPRNSLTSALDKYAEEGKSLGSGEISIAM 110
           L+L D + ++   KK +S    S +F+ I+     S+ SALDK+ E+GK L   EI +A+
Sbjct: 71  LELSDTE-TDSSDKKSFSSRRRSELFKAIVSVSGLSVDSALDKWVEKGKELSRQEIGLAL 129

Query: 109 LNLRKRRLYSMALQFVEWLEARKKIELTDRDYVSHL 2
            +LR+R++Y  ALQ ++WLE+ KK+E T+++Y S L
Sbjct: 130 NSLRRRKMYGRALQALDWLESNKKLEFTEKEYASKL 165


>ref|XP_003590239.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
           gi|355479287|gb|AES60490.1| Pentatricopeptide
           repeat-containing protein [Medicago truncatula]
          Length = 590

 Score = 77.8 bits (190), Expect = 1e-12
 Identities = 39/96 (40%), Positives = 63/96 (65%)
 Frame = -3

Query: 289 LDLVDVKASEGGAKKGWSRLSHSPIFQLIMDTPRNSLTSALDKYAEEGKSLGSGEISIAM 110
           L+L D + ++   KK +S    S +F+ I+     S+ SALDK+ E+GK L   EI +A+
Sbjct: 120 LELSDTE-TDSSDKKSFSSRRRSELFKAIVSVSGLSVDSALDKWVEKGKELSRQEIGLAL 178

Query: 109 LNLRKRRLYSMALQFVEWLEARKKIELTDRDYVSHL 2
            +LR+R++Y  ALQ ++WLE+ KK+E T+++Y S L
Sbjct: 179 NSLRRRKMYGRALQALDWLESNKKLEFTEKEYASKL 214


>ref|XP_003567340.1| PREDICTED: pentatricopeptide repeat-containing protein At1g80270,
           mitochondrial-like [Brachypodium distachyon]
          Length = 612

 Score = 77.0 bits (188), Expect = 2e-12
 Identities = 37/101 (36%), Positives = 63/101 (62%), Gaps = 1/101 (0%)
 Frame = -3

Query: 301 AYGSLDLVDVK-ASEGGAKKGWSRLSHSPIFQLIMDTPRNSLTSALDKYAEEGKSLGSGE 125
           A  ++DL++V  A     K+   ++S  P+ +++++ P N ++  L K+  +G ++   +
Sbjct: 119 AADAVDLLEVDDADSKSEKEPKKKISQCPLLKVMLEAPWNDVSGTLKKWVNDGNTVDRSD 178

Query: 124 ISIAMLNLRKRRLYSMALQFVEWLEARKKIELTDRDYVSHL 2
           +  A+LNLR+RR +S ALQ +EWLE  K IEL +RDY S L
Sbjct: 179 VFFAVLNLRRRRFFSKALQLLEWLEESKLIELVERDYASRL 219


>ref|XP_004162628.1| PREDICTED: pentatricopeptide repeat-containing protein At1g80270,
           mitochondrial-like [Cucumis sativus]
          Length = 613

 Score = 76.6 bits (187), Expect = 3e-12
 Identities = 42/99 (42%), Positives = 61/99 (61%), Gaps = 1/99 (1%)
 Frame = -3

Query: 295 GSLDLVDVKASEGGAKKGWS-RLSHSPIFQLIMDTPRNSLTSALDKYAEEGKSLGSGEIS 119
           G+ + +D+   E G  +  S + + S +  +I   P  +++SALDK+  EGK L   +IS
Sbjct: 121 GTQNELDLPEGETGLVEKISIKRAPSELLNVIWKAPGLTVSSALDKWVSEGKELSRDDIS 180

Query: 118 IAMLNLRKRRLYSMALQFVEWLEARKKIELTDRDYVSHL 2
            AMLNLRK R+Y  ALQF EWLEA  K++  ++DY S L
Sbjct: 181 SAMLNLRKCRMYGKALQFSEWLEANGKLDFVEKDYASRL 219


>gb|AFW79512.1| DNA-binding protein [Zea mays]
          Length = 622

 Score = 76.3 bits (186), Expect = 4e-12
 Identities = 33/77 (42%), Positives = 53/77 (68%)
 Frame = -3

Query: 232 LSHSPIFQLIMDTPRNSLTSALDKYAEEGKSLGSGEISIAMLNLRKRRLYSMALQFVEWL 53
           LS S + + +++ PR+ +TSAL+K+A++G +   GE+   +LNLRKR  YS AL+ VEW+
Sbjct: 152 LSDSILLKTVLEAPRHQVTSALEKWAKDGNAFDRGELYYVLLNLRKRHWYSKALELVEWV 211

Query: 52  EARKKIELTDRDYVSHL 2
           +  +  E  +RDY +HL
Sbjct: 212 QKSQLFEFVERDYAAHL 228


>gb|ADN33878.1| DNA-binding protein [Cucumis melo subsp. melo]
          Length = 470

 Score = 76.3 bits (186), Expect = 4e-12
 Identities = 43/94 (45%), Positives = 61/94 (64%), Gaps = 1/94 (1%)
 Frame = -3

Query: 280 VDVKASEGG-AKKGWSRLSHSPIFQLIMDTPRNSLTSALDKYAEEGKSLGSGEISIAMLN 104
           +D+   E G A+K  ++ + S +F +I   P  S+ SALDK+  EGK L   +IS+ ML 
Sbjct: 111 LDLPEGETGLAEKISTKGAPSELFNIIWKAPGLSVPSALDKWVSEGKELSRADISLTMLY 170

Query: 103 LRKRRLYSMALQFVEWLEARKKIELTDRDYVSHL 2
           LR+RR++  AL+F EWLEA  K+ +TDRDY S L
Sbjct: 171 LRRRRMFGKALKFSEWLEANGKL-VTDRDYASQL 203


>ref|NP_001147602.1| DNA-binding protein [Zea mays] gi|195612448|gb|ACG28054.1|
           DNA-binding protein [Zea mays]
          Length = 622

 Score = 76.3 bits (186), Expect = 4e-12
 Identities = 33/77 (42%), Positives = 53/77 (68%)
 Frame = -3

Query: 232 LSHSPIFQLIMDTPRNSLTSALDKYAEEGKSLGSGEISIAMLNLRKRRLYSMALQFVEWL 53
           LS S + + +++ PR+ +TSAL+K+A++G +   GE+   +LNLRKR  YS AL+ VEW+
Sbjct: 152 LSDSILLKTVLEAPRHQVTSALEKWAKDGNAFDRGELYYVLLNLRKRHWYSKALELVEWV 211

Query: 52  EARKKIELTDRDYVSHL 2
           +  +  E  +RDY +HL
Sbjct: 212 QKSQLFEFVERDYAAHL 228