BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Zingiber24_contig00013010
         (2734 letters)

Database: ./nr 
           37,332,560 sequences; 13,225,080,153 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

emb|CBI28022.3| unnamed protein product [Vitis vinifera]              679   0.0  
ref|XP_002280611.1| PREDICTED: CRS2-associated factor 1, chlorop...   670   0.0  
gb|EMJ04984.1| hypothetical protein PRUPE_ppa001872mg [Prunus pe...   662   0.0  
ref|XP_004139352.1| PREDICTED: CRS2-associated factor 1, chlorop...   655   0.0  
gb|EXB59798.1| CRS2-associated factor 1 [Morus notabilis]             654   0.0  
ref|XP_004239268.1| PREDICTED: CRS2-associated factor 1, chlorop...   649   0.0  
ref|XP_004287455.1| PREDICTED: CRS2-associated factor 1, chlorop...   648   0.0  
ref|XP_002535109.1| conserved hypothetical protein [Ricinus comm...   648   0.0  
ref|XP_006338151.1| PREDICTED: CRS2-associated factor 1, chlorop...   643   0.0  
ref|XP_006389456.1| hypothetical protein POPTR_0024s00430g [Popu...   642   0.0  
gb|EOY30694.1| RNA-binding CRS1 / YhbY domain-containing protein...   637   e-179
ref|XP_002332503.1| predicted protein [Populus trichocarpa]           635   e-179
ref|XP_002886005.1| hypothetical protein ARALYDRAFT_480467 [Arab...   597   e-168
ref|NP_565462.1| CRS2-associated factor 1 [Arabidopsis thaliana]...   581   e-163
ref|XP_003532480.1| PREDICTED: CRS2-associated factor 1, chlorop...   579   e-162
ref|XP_006494323.1| PREDICTED: CRS2-associated factor 1, chlorop...   578   e-162
ref|XP_006451251.1| hypothetical protein CICLE_v100106541mg, par...   578   e-162
gb|ESW32299.1| hypothetical protein PHAVU_002G310400g [Phaseolus...   573   e-160
gb|EEC70705.1| hypothetical protein OsI_02075 [Oryza sativa Indi...   569   e-159
ref|NP_001043122.1| Os01g0495900 [Oryza sativa Japonica Group] g...   568   e-159

>emb|CBI28022.3| unnamed protein product [Vitis vinifera]
          Length = 723

 Score =  679 bits (1753), Expect = 0.0
 Identities = 389/741 (52%), Positives = 471/741 (63%), Gaps = 14/741 (1%)
 Frame = +2

Query: 74   EVRFSRWNNANAEPFVRRRRQQKEIEDEIRRNRRHQSASRIXXXXXXXXXXLDFPHSSPA 253
            EVRFSRWNNANAE F  R R QKEIED IRR RR  SA+RI               ++  
Sbjct: 24   EVRFSRWNNANAERFTLRERAQKEIEDNIRRERRFDSATRIADIDDAGTSK---EAAAAG 80

Query: 254  DFRSRGTPSSPSARSIPGRASKYSKPPVDSKEARHPAFRR-TYRARIP-PQVDGES--GI 421
             F+S GTPSSPS  SIPG++SKYSK    + +  HPAFR+ + R ++P P +  E+  GI
Sbjct: 81   TFKSTGTPSSPSKPSIPGKSSKYSK----NSKTSHPAFRQISRRTKLPGPNISPEAKRGI 136

Query: 422  TVGENGIAYRIGGAPFEFQYSYTETPKVKPLGLREAPFLXXXXXXXXXXXXXXAPLPPSK 601
            ++GE+G++Y + G PFE +YSYTETPKVKP+ LRE PFL              APLPPSK
Sbjct: 137  SIGEDGVSYMVPGVPFELRYSYTETPKVKPIALREPPFLPFGPDTMPRPWTGRAPLPPSK 196

Query: 602  KKLPEFDSFHLPPPGKKGVKSIQSPGPFVAGSGPKYHATSREEILGEPLTKEEVKDLIKG 781
            KKL EFDSF LPPPGKK VK +Q+PGPF+ GSGP+Y   SREEILGEPLT+EE+K+L++G
Sbjct: 197  KKLKEFDSFQLPPPGKKRVKPVQAPGPFLPGSGPRY-VRSREEILGEPLTEEEIKELVQG 255

Query: 782  CMKTRRQLNMGRDGLTHNMLDNIHAHWKRRRVCKIRCLGVSTVDMDNVRQQLEEKTGGKI 961
            C+K++RQLNMGRDGLTHNMLDNIHAHWKRRRVCKI+C GV TVDMDNVRQQLEEKTGGK+
Sbjct: 256  CVKSKRQLNMGRDGLTHNMLDNIHAHWKRRRVCKIKCKGVCTVDMDNVRQQLEEKTGGKV 315

Query: 962  IYSKGGVIFLFRGRNYNYRTRPRFPLMLWKPVTPVYPRLVQRVPEGLTLEEATQMRKRGR 1141
            IY KGGV+FLFRGRNYNYR RPRFPLMLWKPVTPVYPRLVQR PEGLTLEEA  MRK+GR
Sbjct: 316  IYGKGGVLFLFRGRNYNYRNRPRFPLMLWKPVTPVYPRLVQRAPEGLTLEEAGAMRKKGR 375

Query: 1142 QLLPICKLGKNGVYNRLVYQVREAFEACELVRINCQGMNPSDYKKIGAKLKDLVPCVLLS 1321
            +L+PICKL KNGVY  LV  VREAFE CELVRINCQG+N SDY+KIGAKLKDLVPCVL+S
Sbjct: 376  KLIPICKLAKNGVYTDLVNNVREAFEECELVRINCQGLNASDYRKIGAKLKDLVPCVLIS 435

Query: 1322 FEHEHILMWGGKDWKSTLPEIEDNGNGATEXXXXXXXXXXXXXXXXFSKEMFDVSAXXXX 1501
            FEHEHILMW G DWK   P+ ED    A E                F  +    S     
Sbjct: 436  FEHEHILMWRGSDWKFLHPKPEDGCKEAKE----SDNNSEASIPPPFEGQELSASC---- 487

Query: 1502 XXXXXXXXXXKSEDLDAHLEVVET-AYVSKSQDTDDDLSRETASSSDEITNMTSG---FS 1669
                      K    D  L++++T A    ++D   D + + +S  ++I +       F+
Sbjct: 488  --------SSKISVKDTSLDMLDTIASPVINEDVAMDKTEDLSSKGNDILSFEGNDKPFA 539

Query: 1670 NHQDPSTTY-LDTSSSGSGCHAELCEDENQDEDSADIVGSARHDGDDAS---TRLDTTGV 1837
              Q   T Y  DT S  +G         N+ E     + +A H  D+++     LDT   
Sbjct: 540  ATQLVKTAYNWDTVSDDTG-------GTNESEIILTKLDNAHHADDESAAMPVELDT--- 589

Query: 1838 NVGMEMEENNCLPEQKPWLDGVTFLLRQAVDDGSALILDDDASSNANIVYQSAVEFAKTA 2017
                 M EN  +    P   G+  LL+QAVD GSA++LD D S +A+IVY   V F+K A
Sbjct: 590  -----MLENGSIKNDAPCTGGLLLLLKQAVDSGSAVVLDGD-SCDADIVYGKTVAFSKDA 643

Query: 2018 PPGPIFRHRTKKATEQAAEQEKHQG--IGQIEEVEMVANSNRKREGXXXXXXXXXDKLPE 2191
            PPGP+FR R +KA  Q  E+E+ +   +G+I        S  K              L  
Sbjct: 644  PPGPVFR-RPRKAAVQKCEKEEPRDLVVGKIVTAPEKGRSQSKSSRNQIAKDFKEGYLDV 702

Query: 2192 ILLDVVPHGSLGVDELAKLLS 2254
                V   G+LGVDELAKLL+
Sbjct: 703  DYPGVGTRGTLGVDELAKLLA 723


>ref|XP_002280611.1| PREDICTED: CRS2-associated factor 1, chloroplastic [Vitis vinifera]
          Length = 752

 Score =  670 bits (1729), Expect = 0.0
 Identities = 390/762 (51%), Positives = 476/762 (62%), Gaps = 35/762 (4%)
 Frame = +2

Query: 74   EVRFSRWNNANAEPFVRRRRQQKEIEDEIRRNRRHQSASRIXXXXXXXXXXLDFPHSSPA 253
            EVRFSRWNNANAE F  R R QKEIED IRR RR  SA+RI               ++  
Sbjct: 24   EVRFSRWNNANAERFTLRERAQKEIEDNIRRERRFDSATRIADIDDAGTSK---EAAAAG 80

Query: 254  DFRSRGTPSSPSARSIPGRASKYSKPPVDSKEARHPAFRR-TYRARIP-PQVDGES--GI 421
             F+S GTPSSPS  SIPG++SKYSK    + +  HPAFR+ + R ++P P +  E+  GI
Sbjct: 81   TFKSTGTPSSPSKPSIPGKSSKYSK----NSKTSHPAFRQISRRTKLPGPNISPEAKRGI 136

Query: 422  TVGENGIAYRIGGAPFEFQYSYTETPKVKPLGLREAPFLXXXXXXXXXXXXXXAPLPPSK 601
            ++GE+G++Y + G PFE +YSYTETPKVKP+ LRE PFL              APLPPSK
Sbjct: 137  SIGEDGVSYMVPGVPFELRYSYTETPKVKPIALREPPFLPFGPDTMPRPWTGRAPLPPSK 196

Query: 602  KKLPEFDSFHLPPPGKKGVKSIQSPGPFVAGSGPKYHATSREEILGEPLTKEEVKDLIKG 781
            KKL EFDSF LPPPGKK VK +Q+PGPF+ GSGP+Y   SREEILGEPLT+EE+K+L++G
Sbjct: 197  KKLKEFDSFQLPPPGKKRVKPVQAPGPFLPGSGPRY-VRSREEILGEPLTEEEIKELVQG 255

Query: 782  CMKTRRQLNMGRDGLTHNMLDNIHAHWKRRRVCKIRCLGVSTVDMDNVRQQLEEKTGGKI 961
            C+K++RQLNMGRDGLTHNMLDNIHAHWKRRRVCKI+C GV TVDMDNVRQQLEEKTGGK+
Sbjct: 256  CVKSKRQLNMGRDGLTHNMLDNIHAHWKRRRVCKIKCKGVCTVDMDNVRQQLEEKTGGKV 315

Query: 962  IYSKGGVIFLFRGRNYNYRTRPRFPLMLWKPVTPVYPRLVQRVPEGLTLEEATQMRKRGR 1141
            IY KGGV+FLFRGRNYNYR RPRFPLMLWKPVTPVYPRLVQR PEGLTLEEA  MRK+GR
Sbjct: 316  IYGKGGVLFLFRGRNYNYRNRPRFPLMLWKPVTPVYPRLVQRAPEGLTLEEAGAMRKKGR 375

Query: 1142 QLLPICKLGKNGVYNRLVYQVREAFEACELVRINCQGMNPSDYKKIGAKLKDLVPCVLLS 1321
            +L+PICKL KNGVY  LV  VREAFE CELVRINCQG+N SDY+KIGAKLKDLVPCVL+S
Sbjct: 376  KLIPICKLAKNGVYTDLVNNVREAFEECELVRINCQGLNASDYRKIGAKLKDLVPCVLIS 435

Query: 1322 FEHEHILMWGGKDWKSTLPEIEDNGNGATEXXXXXXXXXXXXXXXXFSKEMFDVSAXXXX 1501
            FEHEHILMW G DWK   P+ ED    A E                F  +    S     
Sbjct: 436  FEHEHILMWRGSDWKFLHPKPEDGCKEAKE----SDNNSEASIPPPFEGQELSASC---- 487

Query: 1502 XXXXXXXXXXKSEDLDAHLEVVET-AYVSKSQDTDDDLSRETASSSDEITNMTSG---FS 1669
                      K    D  L++++T A    ++D   D + + +S  ++I +       F+
Sbjct: 488  --------SSKISVKDTSLDMLDTIASPVINEDVAMDKTEDLSSKGNDILSFEGNDKPFA 539

Query: 1670 NHQDPSTTY-LDTSSSGSGCHAELCEDENQDEDSADIVGSARHDGDDAS---TRLDTTGV 1837
              Q   T Y  DT S  +G         N+ E     + +A H  D+++     LDT   
Sbjct: 540  ATQLVKTAYNWDTVSDDTG-------GTNESEIILTKLDNAHHADDESAAMPVELDTMLE 592

Query: 1838 N----------VGMEMEENNCLPE-----------QKPWLDGVTFLLRQAVDDGSALILD 1954
            N          V  +M++   +P+             P   G+  LL+QAVD GSA++LD
Sbjct: 593  NGSIKNELMDAVTHDMDKLQDIPKASQDCGKMTGSSAPCTGGLLLLLKQAVDSGSAVVLD 652

Query: 1955 DDASSNANIVYQSAVEFAKTAPPGPIFRHRTKKATEQAAEQEKHQG--IGQIEEVEMVAN 2128
             D S +A+IVY   V F+K APPGP+FR R +KA  Q  E+E+ +   +G+I        
Sbjct: 653  GD-SCDADIVYGKTVAFSKDAPPGPVFR-RPRKAAVQKCEKEEPRDLVVGKIVTAPEKGR 710

Query: 2129 SNRKREGXXXXXXXXXDKLPEILLDVVPHGSLGVDELAKLLS 2254
            S  K              L      V   G+LGVDELAKLL+
Sbjct: 711  SQSKSSRNQIAKDFKEGYLDVDYPGVGTRGTLGVDELAKLLA 752


>gb|EMJ04984.1| hypothetical protein PRUPE_ppa001872mg [Prunus persica]
          Length = 750

 Score =  662 bits (1707), Expect = 0.0
 Identities = 384/755 (50%), Positives = 477/755 (63%), Gaps = 28/755 (3%)
 Frame = +2

Query: 74   EVRFSRWNNANAEPFVRRRRQQKEIEDEIRRNRRHQSASRIXXXXXXXXXXLDFPHSSPA 253
            EVRF+RWNNANAE F  RRR Q+EIED+IRR RR  SA+RI               ++  
Sbjct: 32   EVRFARWNNANAEKFNERRRAQQEIEDDIRRERRFDSATRIATIYDSATDTT----TTSE 87

Query: 254  DFRSRGTPSSPSARSIPGRASKYSKPPVDSKEARHPAFRRTYR----ARIP----PQVDG 409
             F+S GTPS PS+ SIPG+ SKYSK P + KE+ HPAFRR  R    ++IP    P VD 
Sbjct: 88   TFKSVGTPSFPSSPSIPGKKSKYSKNP-NPKES-HPAFRRIIRPTKLSKIPKDKGPTVDR 145

Query: 410  ESGITVGENGIAYRIGGAPFEFQYSYTETPKVKPLGLREAPFLXXXXXXXXXXXXXXAPL 589
            ++ I+VG++G++Y I GAPFEF+YSYTETPKVKPL LRE  +               APL
Sbjct: 146  KANISVGDDGLSYVIDGAPFEFKYSYTETPKVKPLKLREPAYAPFGPTTMARPWTGRAPL 205

Query: 590  PPSKKKLPEFDSFHLPPPGKKGVKSIQSPGPFVAGSGPKYHATSREEILGEPLTKEEVKD 769
            PPSKKKL EFDSF LPPP KKGVK +QSPGP++ GSGPKY   SR+EILG+PLT EEVK+
Sbjct: 206  PPSKKKLKEFDSFQLPPPHKKGVKPVQSPGPYLPGSGPKY-VKSRDEILGDPLTPEEVKE 264

Query: 770  LIKGCMKTRRQLNMGRDGLTHNMLDNIHAHWKRRRVCKIRCLGVSTVDMDNVRQQLEEKT 949
            L+KGC+KTRRQLNMGRDG THNMLDNIHAHWKRRRVCKI+C GV TVDMDNV +Q+EEKT
Sbjct: 265  LVKGCIKTRRQLNMGRDGFTHNMLDNIHAHWKRRRVCKIKCKGVCTVDMDNVCEQIEEKT 324

Query: 950  GGKIIYSKGGVIFLFRGRNYNYRTRPRFPLMLWKPVTPVYPRLVQRVPEGLTLEEATQMR 1129
            GGKIIY KGGVI+LFRGRNYNY+TRP+FPLMLW+P+TPVYPRLVQR PEGLTLEEAT+MR
Sbjct: 325  GGKIIYRKGGVIYLFRGRNYNYKTRPQFPLMLWRPITPVYPRLVQRAPEGLTLEEATEMR 384

Query: 1130 KRGRQLLPICKLGKNGVYNRLVYQVREAFEACELVRINCQGMNPSDYKKIGAKLKDLVPC 1309
            K+GR L+PICKLGKNGVY+ L    REAFE CELVRINC GMN SDY+KIGAKLKDLVPC
Sbjct: 385  KKGRNLIPICKLGKNGVYSELAKNAREAFEECELVRINCTGMNGSDYRKIGAKLKDLVPC 444

Query: 1310 VLLSFEHEHILMWGGKDWKSTLPEIEDNGNGATEXXXXXXXXXXXXXXXXFSKEMFDVSA 1489
            VL+SFE EHILMW G++WKS++P  E   N   E                  +E     A
Sbjct: 445  VLISFELEHILMWRGREWKSSIPYPE---NDLKEVKGSDVDDSTSIAPPLEGQEESTSCA 501

Query: 1490 XXXXXXXXXXXXXXKSEDLDAHLEVVETAYVSKSQDTDDDLSRETASSSDEITNMTSGFS 1669
                               DA LE++ T+  S   +         A  S +++      S
Sbjct: 502  STVSVK-------------DASLEILNTSTPSIGSEV------VGAEESGDLSP-----S 537

Query: 1670 NHQDPSTTYLDTSSSGSGCHAELCEDENQDEDSADIVGSARHD---------GDDASTRL 1822
             + +P  T +D  S+  G H      + +D++S  I+  +  D          D+AS   
Sbjct: 538  QYVEPCAT-VDGVSAVGGTHVTETISDVEDDESKAILDPSGIDRILDNTGCAADEASPTT 596

Query: 1823 DTTGVNVGMEME------ENNCLPEQK--PWLDGVTFLLRQAVDDGSALILDDDASSNAN 1978
             T G       +      EN   P +   P ++ V  LL +AV  GSALILDD A  +A+
Sbjct: 597  VTGGPRSNENPQCASVSSENLSEPARSSGPCMENVLLLLNEAVGSGSALILDDSA-LDAD 655

Query: 1979 IVYQSAVEFAKTAPPGPIFR-HRTKKATEQAAEQ--EKHQGIGQIEEVEMVANSNRKREG 2149
            I++Q AV  A++APPGP+F+ HR KK   Q   +  ++   + +++E+ +      ++  
Sbjct: 656  IIFQRAVALAQSAPPGPVFKHHRPKKVAVQKRIKIMKQEASVSEVKEITVPVKRGSEKIQ 715

Query: 2150 XXXXXXXXXDKLPEILLDVVPHGSLGVDELAKLLS 2254
                         E L +VVP GSL VDELAKLL+
Sbjct: 716  MKDTKVKRTRDFGESLDNVVPQGSLRVDELAKLLA 750


>ref|XP_004139352.1| PREDICTED: CRS2-associated factor 1, chloroplastic-like [Cucumis
            sativus] gi|449521361|ref|XP_004167698.1| PREDICTED:
            CRS2-associated factor 1, chloroplastic-like [Cucumis
            sativus]
          Length = 745

 Score =  655 bits (1689), Expect = 0.0
 Identities = 379/775 (48%), Positives = 484/775 (62%), Gaps = 24/775 (3%)
 Frame = +2

Query: 2    KFASPFPLFXXXXXXXXXXXXXXX-EVRFSRWNNANAEPFVRRRRQQKEIEDEIRRNRRH 178
            K   PFP+F                E+RFSRW NANAE F +RRR Q+EIEDEIRR RR 
Sbjct: 4    KLPFPFPIFTPQFNPNSTPSHRTLTEIRFSRWYNANAEKFEQRRRSQQEIEDEIRRERRF 63

Query: 179  QSASRIXXXXXXXXXXLDFPHSS---PADFRSRGTPSSPSARSIPGRASKYSKPPVDSKE 349
             SA++I           D P S+      FRS GTPSSPS  SIPGR SKYSK P     
Sbjct: 64   SSAAKIVDLCDS-----DSPSSAIDRNETFRSVGTPSSPSRPSIPGRKSKYSKNPNPDSP 118

Query: 350  ARHPAFRRTYRARIPPQ---VDGESGITVGENGIAYRIGGAPFEFQYSYTETPKVKPLGL 520
            +      +T +    P+   +  E+ +++ E+G++Y I GAPFEF+YSYTETPKVKP+ L
Sbjct: 119  SPFRQVSKTKKTMNAPEERHIGVEANVSLSEDGVSYVIDGAPFEFKYSYTETPKVKPIKL 178

Query: 521  REAPFLXXXXXXXXXXXXXXAPLPPSKKKLPEFDSFHLPPPGKKGVKSIQSPGPFVAGSG 700
            RE P+               APLPPSKKKLPEFDSF LPP  KKGVK +Q+PGPF+AGSG
Sbjct: 179  RE-PYAPFGPTTMSRPWTGRAPLPPSKKKLPEFDSFQLPPKNKKGVKPVQAPGPFLAGSG 237

Query: 701  PKYHATSREEILGEPLTKEEVKDLIKGCMKTRRQLNMGRDGLTHNMLDNIHAHWKRRRVC 880
            PKY   SREEILGEPLTKEE+K LI+GC+ + RQLN+GRDGLTHNML+NIHA WKRRRVC
Sbjct: 238  PKY-VMSREEILGEPLTKEEIKALIRGCINSNRQLNIGRDGLTHNMLENIHALWKRRRVC 296

Query: 881  KIRCLGVSTVDMDNVRQQLEEKTGGKIIYSKGGVIFLFRGRNYNYRTRPRFPLMLWKPVT 1060
            KI+C GV TVDMDNV+QQLEE+TGGKIIYS+GG ++L+RGRNYNY+TRPRFPLMLWKP  
Sbjct: 297  KIKCKGVCTVDMDNVKQQLEERTGGKIIYSRGGALYLYRGRNYNYKTRPRFPLMLWKPAA 356

Query: 1061 PVYPRLVQRVPEGLTLEEATQMRKRGRQLLPICKLGKNGVYNRLVYQVREAFEACELVRI 1240
            PVYPRLV+ +P+GLTLEE T+MRK+GR+L+PICKLGKNGVY+ LV  VREAFE CELVRI
Sbjct: 357  PVYPRLVKHIPDGLTLEEVTEMRKKGRKLIPICKLGKNGVYSALVKHVREAFEECELVRI 416

Query: 1241 NCQGMNPSDYKKIGAKLKDLVPCVLLSFEHEHILMWGGKDWKSTLPEIEDNGNGA----- 1405
            NCQG+N SD++KIGAKLKDLVPCVL+SFE EHIL+W G+DWKS+LP IE N  GA     
Sbjct: 417  NCQGLNGSDFRKIGAKLKDLVPCVLISFESEHILLWRGRDWKSSLPYIERNPEGAKAHGT 476

Query: 1406 --TEXXXXXXXXXXXXXXXXFSKEMFDVSAXXXXXXXXXXXXXXKSEDLDAHLEVV-ETA 1576
              T                  S +  D+S                S D+D+    + E+ 
Sbjct: 477  DETTIVAPSIEQDVSVKNTLTSLDSEDLSTGGNEDPDSMIAEKSISADVDSLTTTMHESN 536

Query: 1577 YVSKSQDTD--DDLSRETASSSDEITNMTSGFSNHQDPSTTYLDTSSSGSGCHAEL---C 1741
            +VS  ++    DD    TA++S++                  LD+ S+ SG  +E+    
Sbjct: 537  FVSYDEEATGLDDQKLHTATTSED------------------LDSWSTISGGESEIESGY 578

Query: 1742 EDENQDEDSADIVGSARHDGDDASTRLDTTGVNVGMEMEENNCLPEQKPWLDGVTFLLRQ 1921
            E  + D D A+ +     D   A+   +T G+    E  +    P      DGV  LL+Q
Sbjct: 579  EFSDSDFDEAEPMEQLEFDSIAATGNSETNGLYTS-EGSQALTKPTSNA-TDGVLQLLKQ 636

Query: 1922 AVDDGSALILDDDASSNANIVYQSAVEFAKTAPPGPIFRH-RTKKATEQAAEQEKHQGIG 2098
            AV++GSA++L D +S +A+++YQ +V F+++APP P+F+H R KK     +E+E  + + 
Sbjct: 637  AVENGSAVVL-DSSSLDADVIYQQSVAFSQSAPPSPVFKHERRKKVAADKSEEETSRELE 695

Query: 2099 QIEE---VEMVANSNRKREGXXXXXXXXXDKLPEILLDVVPHGSLGVDELAKLLS 2254
              EE   V M   +++K++          +          P GSLGVDELAKLL+
Sbjct: 696  VKEEETAVSMEVGNDKKKDSKTKKNKNFGE-----YNFSSPQGSLGVDELAKLLA 745


>gb|EXB59798.1| CRS2-associated factor 1 [Morus notabilis]
          Length = 792

 Score =  654 bits (1688), Expect = 0.0
 Identities = 392/813 (48%), Positives = 489/813 (60%), Gaps = 62/813 (7%)
 Frame = +2

Query: 2    KFASPFPLFXXXXXXXXXXXXXXX-EVRFSRWNNANAEPFVRRRRQQKEIEDEIRRNRRH 178
            K   PFP+F                E+RFSRWNNANAE F  RRR  ++IED+IRR RR 
Sbjct: 4    KLPIPFPIFAPHLNPSPPQYHRLPTELRFSRWNNANAEKFNERRRTLQQIEDDIRRQRRF 63

Query: 179  QSASRIXXXXXXXXXXLDFPHS-SPAD--------FRSRGTPSSPSARSIPGRASKYSKP 331
             SA+RI           D P S SP+         F+S GTPSSPS  SIPG+ SKYSK 
Sbjct: 64   DSATRIS----------DIPDSASPSTAGSATGEFFKSIGTPSSPSRPSIPGKKSKYSKN 113

Query: 332  PVDSKEAR-HPAFRRTYRAR---------IPPQ---VDGESGITVGENGIAYRIGGAPFE 472
            P  S ++R HPAFR   R R         +P     V+ ++ + VGE+G++Y I GAPFE
Sbjct: 114  PNPSFDSRSHPAFRPLRRVRKIAVKELSGLPKDKRDVERKADVRVGEDGVSYVIDGAPFE 173

Query: 473  FQYSYTETPKVKPLGLREAPFLXXXXXXXXXXXXXXAPLPPSKKKLPEFDSFHLPPPGKK 652
            F+YSYTETPK +P+ LREAP+               APLPPSKKKL EFDSF L PP KK
Sbjct: 174  FKYSYTETPKAQPVKLREAPYAPFGPTTMPRPWTGRAPLPPSKKKLKEFDSFRLSPPHKK 233

Query: 653  GVKSIQSPGPFVAGSGPKYHATSREEILGEPLTKEEVKDLIKGCMKTRRQLNMGRDGLTH 832
            GVK +Q+PGPF+ GSGPKY   SREEILGEPLT+EE+KDLI+GC KT+RQ+NMGRDGLTH
Sbjct: 234  GVKPVQAPGPFLPGSGPKY-VMSREEILGEPLTEEEIKDLIEGCRKTKRQMNMGRDGLTH 292

Query: 833  NMLDNIHAHWKRRRVCKIRCLGVSTVDMDNVRQQLEEKTGGKIIYSKGGVIFLFRGRNYN 1012
            NMLDNIHAHWKRRRVCKI+C GV TVDMDNV++QLEE+TGGKIIY KGGVIFLFRGRNYN
Sbjct: 293  NMLDNIHAHWKRRRVCKIKCKGVCTVDMDNVKEQLEERTGGKIIYGKGGVIFLFRGRNYN 352

Query: 1013 YRTRPRFPLMLWKPVTPVYPRLVQRVPEGLTLEEATQMRKRGRQLLPICKLGKNGVYNRL 1192
            YRTRPRFPLMLWKPVTPVYPRLV+RVPEGLTLEEA +MRK+G +L+PICKLGKNGVY+ L
Sbjct: 353  YRTRPRFPLMLWKPVTPVYPRLVKRVPEGLTLEEAKEMRKKGHKLMPICKLGKNGVYHNL 412

Query: 1193 VYQVREAFEACELVRINCQGMNPSDYKKIGAKLKDLVPCVLLSFEHEHILMWGGKDWKST 1372
            V  VREAFE CELVRINCQGMN SDY+KIGAKLKDLVPCVLLSF  EHIL+W G DWKS+
Sbjct: 413  VKHVREAFEECELVRINCQGMNGSDYRKIGAKLKDLVPCVLLSFAFEHILIWRGCDWKSS 472

Query: 1373 LPEIEDNGNGATEXXXXXXXXXXXXXXXXFSKEMFDVSAXXXXXXXXXXXXXXKSEDLDA 1552
            LP++  + + A E                 S E  +V+                +  L+ 
Sbjct: 473  LPKLVKDRDEAKESDVQIVTSVAP------SVEGEEVAMSTGSVNDASLELISTTSTLNR 526

Query: 1553 HLEVVET---------AYVSKSQDTDDDLSRETASSSDEITNMTSGFSNH--QDPSTTYL 1699
              EV+ T          YV     T D  +     ++++I+++     +      +T+Y 
Sbjct: 527  SHEVIGTEGREDSSSVEYVEPCSTTGDVSNEIKTFATEKISDVQIPVDDRLGDTSNTSYN 586

Query: 1700 DTSSSGSGCHAELCEDENQDEDSADIVG----------------SARHDGDDASTRLDTT 1831
             T+S  SG +    +    D  S  ++G                SA  + D  +   +  
Sbjct: 587  GTTSENSGSNGTRSDSIECDGLSTAMLGLDTIIPKVADGNAEMKSALFEADSLANEKEQV 646

Query: 1832 GVNVGMEMEENNCLPEQKPWLDGVTFLLRQAVDDGSALILDDDASSNANIVYQSAVEFAK 2011
               V  ++ +   L    P  +GV  LL+QAV  G A+ILD+D + ++++VYQ  V F++
Sbjct: 647  PSEVLQDVNQPTRL--NAPCTEGVLSLLQQAVVGGLAIILDED-NLDSDVVYQRTVAFSQ 703

Query: 2012 TAPPGPIFRHRTKK--------ATEQAAEQEKHQGIGQIEEVEM----VANSNRKREGXX 2155
            +APPGP+F+ R +K           +  E EK Q        E+    V   + K+    
Sbjct: 704  SAPPGPVFKGRPRKMLPKKVMVKNSEVLENEK-QDTEDFAPKEIRTIYVKEGSGKKASKA 762

Query: 2156 XXXXXXXDKLPEILLDVVPHGSLGVDELAKLLS 2254
                   + L  +   VVP GSL VDELAKLL+
Sbjct: 763  RRRKDFGENLDNV---VVPQGSLRVDELAKLLA 792


>ref|XP_004239268.1| PREDICTED: CRS2-associated factor 1, chloroplastic-like [Solanum
            lycopersicum]
          Length = 766

 Score =  649 bits (1675), Expect = 0.0
 Identities = 378/757 (49%), Positives = 472/757 (62%), Gaps = 30/757 (3%)
 Frame = +2

Query: 74   EVRFSRWNNANAEPFVRRRRQQKEIEDEIRRNRRHQSASRIXXXXXXXXXXLDFPHSSPA 253
            E+RFSRWNNANAE F+R  R QKEIEDEIR ++R  S   I             P S  A
Sbjct: 26   EIRFSRWNNANAEKFIRHERTQKEIEDEIRFHKRFDSVLSIANNYNPA------PPSPVA 79

Query: 254  D--FRSRGTPSSPSARSIPGRASKYSKPPVDSKEARHPAFRRTYRAR-----IPPQVDGE 412
            +  F+S GTPS+PS+ SIPG+ SKYS+   ++    HPAF+   R R      P +  G+
Sbjct: 80   EKTFKSTGTPSTPSSPSIPGKKSKYSRNFHNNPRQIHPAFKPLVRTRKIPVETPDETAGK 139

Query: 413  SGIT--VGENGIAYRIGGAPFEFQYSYTETPKVKPLGLREAPFLXXXXXXXXXXXXXXAP 586
            S I   V ENG+ Y    APF +QYSYTETPKVKP  LRE                   P
Sbjct: 140  SDIDIKVDENGVCYEFPEAPFVYQYSYTETPKVKPRKLREPLVSPFGPESMQRPWTGRKP 199

Query: 587  LPPSKKKLPEFDSFHLPPPGKKGVKSIQSPGPFVAGSGPKYHATSREEILGEPLTKEEVK 766
            LPPSKKKLPEFDSF LPPP KKGVK +Q+PGPF+AGSGPKY   SREE+LGEPLTKEE+ 
Sbjct: 200  LPPSKKKLPEFDSFQLPPPHKKGVKPVQAPGPFLAGSGPKY-VKSREEVLGEPLTKEEMM 258

Query: 767  DLIKGCMKTRRQLNMGRDGLTHNMLDNIHAHWKRRRVCKIRCLGVSTVDMDNVRQQLEEK 946
            +LI  C KT RQ+N+GRDGLTHNML+NIHAHWKR+RVCKI+C GV TVDMDNV ++LEEK
Sbjct: 259  ELINSCKKTTRQMNIGRDGLTHNMLENIHAHWKRKRVCKIKCKGVCTVDMDNVCEKLEEK 318

Query: 947  TGGKIIYSKGGVIFLFRGRNYNYRTRPRFPLMLWKPVTPVYPRLVQRVPEGLTLEEATQM 1126
            TGGKIIY KGGVI+LFRGRNYNY TRPRFPLMLW+PVTPVYPRLV+RVPEGLTLEEAT+M
Sbjct: 319  TGGKIIYHKGGVIYLFRGRNYNYMTRPRFPLMLWRPVTPVYPRLVRRVPEGLTLEEATEM 378

Query: 1127 RKRGRQLLPICKLGKNGVYNRLVYQVREAFEACELVRINCQGMNPSDYKKIGAKLKDLVP 1306
            RK+GR L+PICKL KNGVY  LV  VREAFEACELV INCQG+NPSDY+KIGAKLKDLVP
Sbjct: 379  RKKGRNLIPICKLAKNGVYCDLVKNVREAFEACELVCINCQGLNPSDYRKIGAKLKDLVP 438

Query: 1307 CVLLSFEHEHILMWGGKDWKSTLPEIEDNGNGATEXXXXXXXXXXXXXXXXFSKEMFDVS 1486
            CVL+SFE EHIL+W G+DW S+LPE  DN     E                F  ++   +
Sbjct: 439  CVLISFEQEHILIWRGRDWVSSLPEDGDN----PEIREGSESVNAANTNRSFEVQVVAST 494

Query: 1487 AXXXXXXXXXXXXXXKSEDLDAHLEVVETAYVSKSQDTDDDLSRETASSSDEITNMTSGF 1666
            A               S +    L   +  YV K    +D        SS++++  T+G 
Sbjct: 495  AGSSSLPVTEVNTYNLSAN-TFPLGDEDAEYVRKDGTKEDRSEDHYPESSNKVSVTTTGI 553

Query: 1667 SNHQDPSTTYLDTSSSG---SGCHAELCEDENQDEDSADIVGSARHDGD---DASTRLDT 1828
            S  + P     DT  +    S C       ++   D      SA  D +   D+S+ +  
Sbjct: 554  SKSEIPLVYAGDTGDNSRILSDCRECKTRSDDSVVDKESEFESASDDVENKFDSSSLVPL 613

Query: 1829 TGVNV-GMEMEEN-NC--LPEQKPWLDGVTFLLRQAVDDGSALILDDDASSNANIVYQSA 1996
            TG  V  + ++ N NC  +    P  +G+  L +QA++ GSA++L +D+S +A+IVYQ A
Sbjct: 614  TGYKVHSLTVDTNQNCQLVSSITPCTEGILLLWKQAIESGSAVVL-NDSSIDADIVYQRA 672

Query: 1997 VEFAKTAPPGPIFRHRTKKATEQAAEQEKHQGIGQIE----EVEMVAN-------SNRKR 2143
            V  + + PPGP+F+H+ KK + Q   +E+   IG +E    +++  A+       S+RK 
Sbjct: 673  VALSTSVPPGPVFQHQPKKVSVQRRGEEE---IGDLEVGCTKLDTPASSRKETVVSSRKV 729

Query: 2144 EGXXXXXXXXXDKLPEILLDVVPHGSLGVDELAKLLS 2254
                         + +  L+VVP GSLGVDELAKLL+
Sbjct: 730  NSTTSTRKEKKKGIRKDYLNVVPKGSLGVDELAKLLA 766


>ref|XP_004287455.1| PREDICTED: CRS2-associated factor 1, chloroplastic-like [Fragaria
            vesca subsp. vesca]
          Length = 804

 Score =  648 bits (1672), Expect = 0.0
 Identities = 386/801 (48%), Positives = 484/801 (60%), Gaps = 74/801 (9%)
 Frame = +2

Query: 74   EVRFSRWNNANAEPFVRRRRQQKEIEDEIRRNRRHQSASRIXXXXXXXXXXLDFPHSSPA 253
            EVRF+RWNNANAE F +RRR Q+EIED+ RR RR  SA+RI           D    +  
Sbjct: 32   EVRFARWNNANAEKFNQRRRAQQEIEDDFRRERRFDSATRIATVSVAGSSTSD----AET 87

Query: 254  DFRSRGTPSSPSARSIPGRASKYSKPPVDSKEARHPAFRRTYR-------ARIPPQVDGE 412
             F+S GTPSSPS  SIPG+ SKYS+ P +   + HPAFRR  +        R  P+VD +
Sbjct: 88   AFKSIGTPSSPSRPSIPGKKSKYSENP-NPNPSSHPAFRRVIKPTKLSSITREKPEVDRK 146

Query: 413  SGITVGENGIAYRIGGAPFEFQYSYTETPKVKPLGLREAPFLXXXXXXXXXXXXXXAPLP 592
            + I++G++G++Y I GAPFEF+YSYTETPK KP+ LRE P+               APLP
Sbjct: 147  ANISIGDDGLSYVIDGAPFEFKYSYTETPKQKPIKLREPPYAPFGPTTMGRPWTGRAPLP 206

Query: 593  PSKKKLPEFDSFHLPPPGKKGVKSIQSPGPFVAGSGPKYHATSREEILGEPLTKEEVKDL 772
             SKKK+ EFDSF LPPP KKGV+ +QSPGP++ GSGPKY   SREEILG+PLT +EVKDL
Sbjct: 207  ASKKKMKEFDSFQLPPPHKKGVRPVQSPGPYLPGSGPKY-VKSREEILGDPLTDQEVKDL 265

Query: 773  IKGCMKTRRQLNMGRDGLTHNMLDNIHAHWKRRRVCKIRCLGVSTVDMDNVRQQLEEKTG 952
            + GC+KTRRQLNMGRDGLTHNMLDNIHAHWKRRRVCKI+C GV TVDM+NV QQLEE+TG
Sbjct: 266  VNGCIKTRRQLNMGRDGLTHNMLDNIHAHWKRRRVCKIKCKGVCTVDMENVCQQLEERTG 325

Query: 953  GKIIYSKGGVIFLFRGRNYNYRTRPRFPLMLWKPVTPVYPRLVQRVPEGLTLEEATQMRK 1132
            GKIIY +GGVIFLFRGRNYNY+TRPRFPLMLW+P+TPVYPRL+QR PEGLT+EEAT+MRK
Sbjct: 326  GKIIYRRGGVIFLFRGRNYNYKTRPRFPLMLWRPITPVYPRLIQRAPEGLTVEEATEMRK 385

Query: 1133 RGRQLLPICKLGKNGVYNRLVYQVREAFEACELVRINCQGMNPSDYKKIGAKLKDLVPCV 1312
            +GR L+PI KLGKNGVY+ LV  VREAFE CELVRI+CQGMN SDY+KIGAKLKDLVPCV
Sbjct: 386  KGRDLIPIRKLGKNGVYSDLVDNVREAFEECELVRIDCQGMNGSDYRKIGAKLKDLVPCV 445

Query: 1313 LLSFEHEHILMWGGKDWKSTLPEIEDNGNGATEXXXXXXXXXXXXXXXXFSKEMFDVSAX 1492
            L+SFE E ILMW G++WKS+L   E N     E                 S E  D S  
Sbjct: 446  LISFERESILMWRGREWKSSLVNPESNLKEVKE------SNVDDSPSIALSLEGEDASTV 499

Query: 1493 XXXXXXXXXXXXXKSEDLDAHLEVVET------AYVSKSQDTDD-------------DLS 1615
                              DA+ E+++T      A V  ++ T+D             D  
Sbjct: 500  CAFTGSVK----------DANPEMIDTSISSSIAEVVGAEGTEDPSPSPYIEPPAIIDTV 549

Query: 1616 RETASSSDEIT--------------NMTSGFSNHQDPSTTYLD----TSSSGSGCHAELC 1741
             +  S+ + +T              NM +  S      T+Y D    T SS SG    L 
Sbjct: 550  SDVGSTCETVTISDIKGFRDDEAELNMKAYSSLVIPEDTSYADDESETISSTSGTEDILD 609

Query: 1742 EDENQDEDSADI---VGSARHDGDDASTRLDTTGVNVGMEMEENNCLPEQ---------- 1882
               + DE S       G+     ++  T+L+T      ME   +N  P+           
Sbjct: 610  NTRHADEASPTTSVGTGAILVTVENTETKLNTL-----MESPGSNKTPQDASVASQNLNE 664

Query: 1883 -----KPWLDGVTFLLRQAVDDGSALILDDDASSNANIVYQSAVEFAKTAPPGPIFRHRT 2047
                     + V  LL +AV  GSALIL DD+S +A+I+YQ AV+ AK+APPGP+F+HR+
Sbjct: 665  RAKLCAACKEKVLSLLNEAVGSGSALIL-DDSSLDADIIYQRAVDLAKSAPPGPVFKHRS 723

Query: 2048 KKATEQAAE----QEKHQGIGQIEEVEMVANSNRKREGXXXXXXXXXDKL--------PE 2191
             + + Q  +    +++ Q   ++E  E+     ++  G          K+         E
Sbjct: 724  SRGSAQMRKKLVVRKQKQEATELEVKEITVYDMQRNLGEKKRSERKDSKVHRTRTRDFGE 783

Query: 2192 ILLDVVPHGSLGVDELAKLLS 2254
             L  +VP GSL VDELAKLL+
Sbjct: 784  PLDSIVPQGSLRVDELAKLLA 804


>ref|XP_002535109.1| conserved hypothetical protein [Ricinus communis]
            gi|223524018|gb|EEF27274.1| conserved hypothetical
            protein [Ricinus communis]
          Length = 748

 Score =  648 bits (1671), Expect = 0.0
 Identities = 368/747 (49%), Positives = 456/747 (61%), Gaps = 20/747 (2%)
 Frame = +2

Query: 74   EVRFSRWNNANAEPFVRRRRQQKEIEDEIRRNRRHQSASRIXXXXXXXXXXLDFPHSSPA 253
            ++ FSRWNNANA  F  RRR QKEIE++IRRNRR  SA+ I           +F      
Sbjct: 33   DIHFSRWNNANAREFNDRRRAQKEIEEDIRRNRRFNSAANIIDNYDSATSNENFKS---- 88

Query: 254  DFRSRGTPSSPSARSIPGRASKYSKPPVDSKEARHPAFRRTYRARIPP----QVDGESGI 421
              +S GTPSSPSA SIPGR SKYSKP  +S  + HPAFR   +    P     +D  + +
Sbjct: 89   --KSIGTPSSPSAPSIPGRKSKYSKP--ESPTSHHPAFRSISKITKKPLPEKPIDRNADV 144

Query: 422  TVGENGIAYRIGGAPFEFQYSYTETPKVKPLGLREAPFLXXXXXXXXXXXXXXAPLPPSK 601
             + E+G+++ + GAPFEF+YSYTETPK KP+ LREAPF               APLPPSK
Sbjct: 145  KLSEDGLSFVVDGAPFEFKYSYTETPKAKPIKLREAPFSPFGPTTMGRPWTGRAPLPPSK 204

Query: 602  KKLPEFDSFHLPPPGKKGVKSIQSPGPFVAGSGPKYHATSREEILGEPLTKEEVKDLIKG 781
            KKL EFDSF LPPP KKGVK +Q PGPF+ G+GP+Y   SREEILGEPLT EEVK LI+G
Sbjct: 205  KKLREFDSFKLPPPDKKGVKPVQKPGPFLPGAGPRY-VYSREEILGEPLTTEEVKILIEG 263

Query: 782  CMKTRRQLNMGRDGLTHNMLDNIHAHWKRRRVCKIRCLGVSTVDMDNVRQQLEEKTGGKI 961
            C+KTRRQLNMGRDGLTHNMLDNIHAHWKRRRVCKI+C+GV TVDMDNV QQLEE+TGGK+
Sbjct: 264  CLKTRRQLNMGRDGLTHNMLDNIHAHWKRRRVCKIKCMGVCTVDMDNVCQQLEERTGGKV 323

Query: 962  IYSKGGVIFLFRGRNYNYRTRPRFPLMLWKPVTPVYPRLVQRVPEGLTLEEATQMRKRGR 1141
            IY KGGV++LFRGRNYNYRTRPRFPLMLWKPVTPVYPRL++R PEGLTLEEA++MR++GR
Sbjct: 324  IYRKGGVVYLFRGRNYNYRTRPRFPLMLWKPVTPVYPRLIKRAPEGLTLEEASEMRRKGR 383

Query: 1142 QLLPICKLGKNGVYNRLVYQVREAFEACELVRINCQGMNPSDYKKIGAKLKDLVPCVLLS 1321
            +L+PICKL KNGVY  LV +VREAFE CELVRI+CQG+N SDY+K+GAKLK+LVPC+L+S
Sbjct: 384  KLIPICKLAKNGVYCNLVKEVREAFEECELVRIDCQGVNGSDYRKVGAKLKELVPCLLIS 443

Query: 1322 FEHEHILMWGGKDWKSTL--------PEIEDNGNGATEXXXXXXXXXXXXXXXXFSKEMF 1477
            FEHEHILMW G+DWKS++          I  + N AT                       
Sbjct: 444  FEHEHILMWRGRDWKSSMIKPVNDSVEAIGSDVNSATSIASVLEDQIMEIVSHEDGLSKP 503

Query: 1478 DVSAXXXXXXXXXXXXXXKSEDLDAHLEVVETAYVSKSQDTDDDLSRETASSSDEITNMT 1657
            D+S                 +     +    T       +   +    +A S  E+ N  
Sbjct: 504  DMSTIPVGSMDEQAEHPSILDGTSVAIGASSTTVEMSEINPMTESGSSSAVSESEVINNA 563

Query: 1658 SGFS---NHQDPSTTYLDTSSSGSGCHAELCEDENQDEDSADIVGSARHDGDDASTRLDT 1828
             G     N+ DP+       S  S             E   + VGS +   D        
Sbjct: 564  VGSESVVNNMDPANEMPVAMSVSS-------------ETVLESVGSKKELHD-------- 602

Query: 1829 TGVNVGMEMEENNCLPEQKPWLDGVTFLLRQAVDDGSALILDDDASSNANIVYQSAVEFA 2008
              V++    + N        + D V  L +QAV+ GSALIL  DA  +A+IVYQ AV FA
Sbjct: 603  --VSIECSDDVNKPANLSVSYADRVLLLWKQAVESGSALIL-VDADLDADIVYQRAVAFA 659

Query: 2009 KTAPPGPIFRHRTKKATEQAAEQEKHQG-----IGQIEEVEMVANSNRKREGXXXXXXXX 2173
            K+APPGP+FRHR+KKA+ + +E+++ +         +E +E   +     E         
Sbjct: 660  KSAPPGPVFRHRSKKASIRKSEKQESKDSEPKEFLNLEYLETNVSQTMGSENKSSKPQRK 719

Query: 2174 XDKLPEILLDVVPHGSLGVDELAKLLS 2254
                 +  L+    G LGVDELAKLL+
Sbjct: 720  KKSREQQNLNSARLGRLGVDELAKLLA 746


>ref|XP_006338151.1| PREDICTED: CRS2-associated factor 1, chloroplastic-like [Solanum
            tuberosum]
          Length = 764

 Score =  643 bits (1658), Expect = 0.0
 Identities = 374/761 (49%), Positives = 464/761 (60%), Gaps = 34/761 (4%)
 Frame = +2

Query: 74   EVRFSRWNNANAEPFVRRRRQQKEIEDEIRRNRRHQSASRIXXXXXXXXXXLDFPHSSPA 253
            E+RFSRWNNANAE F+R  R QKEIEDEIR ++R  S   I             P S   
Sbjct: 26   EIRFSRWNNANAEKFIRHERTQKEIEDEIRFHKRFDSVLNIANNYNPA------PPSPVT 79

Query: 254  D--FRSRGTPSSPSARSIPGRASKYSKPPVDSKEARHPAFRRTYRAR-IPPQVDGESG-- 418
            +  F+S GTPS+PS+ SIPG+ SKYS+   ++    HPAF+   R R IP +   E+   
Sbjct: 80   EKTFKSVGTPSTPSSPSIPGKKSKYSRNFQNNPRQIHPAFKPLVRTRKIPDETADETARK 139

Query: 419  ----ITVGENGIAYRIGGAPFEFQYSYTETPKVKPLGLREAPFLXXXXXXXXXXXXXXAP 586
                I V ENG+ Y    APF +QYSYTETPK+KP  LRE                   P
Sbjct: 140  SAIDIKVDENGVCYEFPEAPFVYQYSYTETPKLKPKKLREPLVSPFGPESMQRPWTGRKP 199

Query: 587  LPPSKKKLPEFDSFHLPPPGKKGVKSIQSPGPFVAGSGPKYHATSREEILGEPLTKEEVK 766
            LPPSKKK PEFDSF LPPP KKGVK +Q+PGPF+AGSGPKY   SREE+LGEPLTKEE+ 
Sbjct: 200  LPPSKKKRPEFDSFQLPPPHKKGVKPVQAPGPFLAGSGPKY-VKSREEVLGEPLTKEEMM 258

Query: 767  DLIKGCMKTRRQLNMGRDGLTHNMLDNIHAHWKRRRVCKIRCLGVSTVDMDNVRQQLEEK 946
            +LI  C KT RQ+N+GRDGLTHNML+NIHAHWKR+RVCKI+C GV TVDMDNV ++LEEK
Sbjct: 259  ELINSCKKTTRQMNIGRDGLTHNMLENIHAHWKRKRVCKIKCKGVCTVDMDNVCEKLEEK 318

Query: 947  TGGKIIYSKGGVIFLFRGRNYNYRTRPRFPLMLWKPVTPVYPRLVQRVPEGLTLEEATQM 1126
            TGGKIIY KGG+I+LFRGRNYNY+TRPRFPLMLW+PVTPVYPRLVQRVPEGLTLEEAT M
Sbjct: 319  TGGKIIYHKGGLIYLFRGRNYNYKTRPRFPLMLWRPVTPVYPRLVQRVPEGLTLEEATLM 378

Query: 1127 RKRGRQLLPICKLGKNGVYNRLVYQVREAFEACELVRINCQGMNPSDYKKIGAKLKDLVP 1306
            RK+GR L+PICKL KNGVY  LV  VREAFEACELV INCQG+NPSDY+KIGAKLKDLVP
Sbjct: 379  RKKGRNLIPICKLAKNGVYCDLVKNVREAFEACELVSINCQGLNPSDYRKIGAKLKDLVP 438

Query: 1307 CVLLSFEHEHILMWGGKDWKSTLPEIEDNGNGATEXXXXXXXXXXXXXXXXFSKEMFDVS 1486
            CVL+SFE EHILMW G+DW S+LP  ED  N + +                       ++
Sbjct: 439  CVLISFEQEHILMWRGRDWVSSLP--EDRDNDSDKAANTNRSLEVQVVASTSGSPRLPIT 496

Query: 1487 AXXXXXXXXXXXXXXKSEDLDAHLEVVETAYVSKSQDTDDDLSRETASSSDEITNMTSGF 1666
                           + E      E V      + +  D  L     +  D  +  T+G 
Sbjct: 497  EMNTCNLSANTFPLGEEES-----EYVRRDGTKEDRSEDHYLESSNKAPLDVCSVTTTGI 551

Query: 1667 SNHQDPSTTYLDTSSSG---SGCHA-------ELCEDENQDEDSADIVGSARHDGDDAST 1816
            S  + P     DT  +    S C          + + EN+ E ++D V     +  D+S+
Sbjct: 552  SESEIPLVYAGDTGDNSRILSDCRECKTRLDDSVVDTENELESASDDV----ENKFDSSS 607

Query: 1817 RLDTTGVNV-GMEMEEN-NC--LPEQKPWLDGVTFLLRQAVDDGSALILDDDASSNANIV 1984
             +  TG  V  + ++ N NC  +    P  +G+  L +QA++ GSA++L DD+S +A+IV
Sbjct: 608  LVPLTGYKVHSLTVDTNQNCQLVSSITPCTEGILLLWKQAIESGSAVLL-DDSSIDADIV 666

Query: 1985 YQSAVEFAKTAPPGPIFRHRTKKATEQAAEQEKHQGIGQIE-----------EVEMVANS 2131
            YQ AV  + +AP GP+F+H+ KK + Q   +E+   IG +E             +  A S
Sbjct: 667  YQRAVALSTSAPAGPVFQHQPKKVSVQRRGEEE---IGDLEVGCTKLDTPASSRKETAVS 723

Query: 2132 NRKREGXXXXXXXXXDKLPEILLDVVPHGSLGVDELAKLLS 2254
             RK              + E  L+VVP GSLGVDELAKLL+
Sbjct: 724  GRKVNSTTSTRKEKLKGIREDYLNVVPKGSLGVDELAKLLA 764


>ref|XP_006389456.1| hypothetical protein POPTR_0024s00430g [Populus trichocarpa]
            gi|550312256|gb|ERP48370.1| hypothetical protein
            POPTR_0024s00430g [Populus trichocarpa]
          Length = 731

 Score =  642 bits (1656), Expect = 0.0
 Identities = 376/768 (48%), Positives = 476/768 (61%), Gaps = 18/768 (2%)
 Frame = +2

Query: 5    FASPFPLFXXXXXXXXXXXXXXXEVRFSRWNNANAEPFVRRRRQQKEIEDEIRRNRRHQS 184
            F +PFP+F               EV FSRW NANA+ F +R R Q+EIE++I R RR  S
Sbjct: 6    FPTPFPIFAPPSPNPSHRPST--EVHFSRWFNANADKFNQRYRSQQEIEEDISRRRRFTS 63

Query: 185  ASRIXXXXXXXXXXLDFPHSSPAD---FRSRGTPSSPSARSIPGRASKYSKPPVDSKEAR 355
            A+ I           D  +++  D   F+S GTPSSPS+ SIPG+ SKYSKP     +  
Sbjct: 64   ANNIVTNY-------DPKNAAEVDISFFKSTGTPSSPSSPSIPGKKSKYSKP----LKKT 112

Query: 356  HPAFR-RTYRARIP-----PQVDGESGITVGENGIAYRIGGAPFEFQYSYTETPKVKPLG 517
            HPAF  +  R  +P     P +D ++ I + E+G++Y I GAPFEF+YSYTETPKVKPL 
Sbjct: 113  HPAFLPKITRVPLPRNNAKPPIDRKADIKLSEDGVSYVIDGAPFEFKYSYTETPKVKPLK 172

Query: 518  LREAPFLXXXXXXXXXXXXXXAPLPPSKKKLPEFDSFHLPPPGKKGVKSIQSPGPFVAGS 697
            LREAP+               APLPPSKKKL EFDSF LPPP KKGVK +Q+PGPF+ G+
Sbjct: 173  LREAPYAPFGPITMPRPWTGRAPLPPSKKKLREFDSFVLPPPDKKGVKPVQAPGPFLPGA 232

Query: 698  GPKYHATSREEILGEPLTKEEVKDLIKGCMKTRRQLNMGRDGLTHNMLDNIHAHWKRRRV 877
            GP+Y A +REEILG+PLT+EE+++L+ GC+K +RQLNMGRDGLTHNMLDNIHAHWKRRRV
Sbjct: 233  GPRY-AKTREEILGDPLTQEEIQELVDGCLKAKRQLNMGRDGLTHNMLDNIHAHWKRRRV 291

Query: 878  CKIRCLGVSTVDMDNVRQQLEEKTGGKIIYSKGGVIFLFRGRNYNYRTRPRFPLMLWKPV 1057
            CKI+C GV TVDMDNV QQLEE+TGGKIIY KGGV++LFRGRNYNYR RPRFPLMLWKPV
Sbjct: 292  CKIKCKGVCTVDMDNVCQQLEERTGGKIIYRKGGVLYLFRGRNYNYRFRPRFPLMLWKPV 351

Query: 1058 TPVYPRLVQRVPEGLTLEEATQMRKRGRQLLPICKLGKNGVYNRLVYQVREAFEACELVR 1237
            TPVYPRL+QR PEGLTL+EA+ MR +GR+L+PICKLGKNGVY  LV  VREAFE CELVR
Sbjct: 352  TPVYPRLIQRAPEGLTLQEASGMRNKGRKLIPICKLGKNGVYRDLVRNVREAFEECELVR 411

Query: 1238 INCQGMNPSDYKKIGAKLKDLVPCVLLSFEHEHILMWGGKDWKSTLPEIEDNGNGATEXX 1417
            INCQGMN SD++KIGAKL+DLVPCVL+SFE EHILMW G+DWKS+  +  ++G+ A +  
Sbjct: 412  INCQGMNGSDFRKIGAKLRDLVPCVLISFECEHILMWRGRDWKSSFTKPVNDGDEA-KNS 470

Query: 1418 XXXXXXXXXXXXXXFSKEMFDV-SAXXXXXXXXXXXXXXKSEDLDAHLEVVETAYVSKSQ 1594
                             E F V  A              + EDL               +
Sbjct: 471  SIDGATSATPLLEGLQNETFSVKDASTLNLKTSRMDAEDQGEDL-------------SQK 517

Query: 1595 DTDDDLSRET-ASSSDEITNMTSGFSNHQDPSTTYLDTSSSGSGCHAELCEDENQDEDSA 1771
            D D+  + +   S+S EI    +   N    + T  +     SG  +E+  D+    D  
Sbjct: 518  DIDETFAAKIFISTSTEIYESKTTPDNDDSSAVTKSEAMRIASG--SEVILDDRGYIDEM 575

Query: 1772 DIVGSARHDGDDASTRLDTTG-------VNVGMEMEENNCLPEQKPWLDGVTFLLRQAVD 1930
             I  S   D     T L+  G       V+ G  + E   L E   +  GV  LL+QAV+
Sbjct: 576  LITTSVESD-----TTLERIGNMEKLQNVSEGSHVSELAKLNES--YTQGVLELLKQAVE 628

Query: 1931 DGSALILDDDASSNANIVYQSAVEFAKTAPPGPIFRHRTKKATEQAAEQEKHQGIGQIEE 2110
             GSA++L  DA+ +A+ VYQ AV FA++APPGP+FR + +    Q +E +++   G++E 
Sbjct: 629  IGSAVVL--DANLDADAVYQKAVAFAQSAPPGPVFRRQPRNTVVQKSEMQEN---GELEV 683

Query: 2111 VEMVANSNRKREGXXXXXXXXXDKLPEILLDVVPHGSLGVDELAKLLS 2254
             ++ + S                   E  +D VP GSL VDELAKLL+
Sbjct: 684  KQVTSFSKMGGGSERKSSKVRRKYFNEQYVDSVPQGSLRVDELAKLLA 731


>gb|EOY30694.1| RNA-binding CRS1 / YhbY domain-containing protein, putative
            [Theobroma cacao]
          Length = 767

 Score =  637 bits (1642), Expect = e-179
 Identities = 359/759 (47%), Positives = 473/759 (62%), Gaps = 32/759 (4%)
 Frame = +2

Query: 74   EVRFSRWNNANAEPFVRRRRQQKEIEDEIRRNRRHQSASRIXXXXXXXXXXLDFPHSSPA 253
            E+RFSRWNNANAE F +R+R Q+EIED+IRR RR  SA++I          +D   +SP 
Sbjct: 33   EIRFSRWNNANAEKFNQRQRAQQEIEDDIRRYRRFDSATKIAIT-------IDPSSASPR 85

Query: 254  D---FRSRGTPSSPSARSIPGRASKYSKPPVDSKEARHPAFRRTYRARIPPQ---VDGE- 412
                ++S G+PSSPS  SIPG+ SKYSKPP       HPAFR+  +   PP    +D + 
Sbjct: 86   PTETYKSLGSPSSPSNPSIPGKKSKYSKPP------NHPAFRKFSKTANPPPPTPLDKKP 139

Query: 413  SGITVGENGIAYRIGGAPFEFQYSYTETPKVKPLGLREAPFLXXXXXXXXXXXXXXAPLP 592
            + +++G++GI++ I GAPFEF+YSYTETPKVKP+ LRE P+               APLP
Sbjct: 140  ANVSIGDDGISFVIDGAPFEFKYSYTETPKVKPIKLREPPYSPFGPSTMPRPWTGRAPLP 199

Query: 593  PSKKKLPEFDSFHLPPPGKKGVKSIQSPGPFVAGSGPKYHATSREEILGEPLTKEEVKDL 772
            PSKKK+ EFDSF LPPP KKGVK IQ PGP++ G+GP+Y   SREEILGEPL  EEVK+L
Sbjct: 200  PSKKKMKEFDSFVLPPPNKKGVKPIQKPGPYLPGTGPRY-VQSREEILGEPLNAEEVKEL 258

Query: 773  IKGCMKTRRQLNMGRDGLTHNMLDNIHAHWKRRRVCKIRCLGVSTVDMDNVRQQLEEKTG 952
            + GC+K++RQLNMGRDGLTHNMLDNIHAHWKRRRVCKI+C GV TVDMDNV +QLEE+TG
Sbjct: 259  VNGCLKSKRQLNMGRDGLTHNMLDNIHAHWKRRRVCKIKCKGVCTVDMDNVCEQLEERTG 318

Query: 953  GKIIYSKGGVIFLFRGRNYNYRTRPRFPLMLWKPVTPVYPRLVQRVPEGLTLEEATQMRK 1132
            GK+IY +GGV+FLFRGRNYNY+TRPRFPLMLWKPVTP+YPRL+Q+ PEGLT+EE ++MRK
Sbjct: 319  GKVIYRRGGVLFLFRGRNYNYKTRPRFPLMLWKPVTPMYPRLIQKAPEGLTVEEMSEMRK 378

Query: 1133 RGRQLLPICKLGKNGVYNRLVYQVREAFEACELVRINCQGMNPSDYKKIGAKLKDLVPCV 1312
            +GR+L+PICKL KNGVY+ LV  VREAFE CELVR+NC+G+  SDY+KIGAKLK+LVPCV
Sbjct: 379  KGRKLMPICKLAKNGVYSDLVKNVREAFEECELVRVNCEGIKGSDYRKIGAKLKELVPCV 438

Query: 1313 LLSFEHEHILMWGGKDWKSTL--------PEIEDNGNGAT--------EXXXXXXXXXXX 1444
            L+SFE+E ILMW G++WKS+          E  D  N  +        E           
Sbjct: 439  LISFENESILMWRGRNWKSSFLKPAFNSGVEERDAENATSILGQLEGQELSPVCVQAGYT 498

Query: 1445 XXXXXFSKEMF----DVSAXXXXXXXXXXXXXXKSEDLDAHLEVVETAYVSKSQDTDDDL 1612
                  S+E+     + S               K E +++ L+ ++ A      + + + 
Sbjct: 499  DQPLMISQEISIEQRESSVEKDRPNAVLDAKPAKMETIESTLDRIDYA------NDESES 552

Query: 1613 SRETASSSDEITNMTSGFSNHQDPSTTY-----LDTSSSGSGCHAELCEDENQDEDSADI 1777
             R T+  +    ++    S  +  S TY     LD     +     L  + +    S++ 
Sbjct: 553  KRNTSGGATFFGDIKCASSESETMSKTYSPEPILDNPGIENEEPVALPLESDVMPRSSEN 612

Query: 1778 VGSARHDGDDASTRLDTTGVNVGMEMEENNCLPEQKPWLDGVTFLLRQAVDDGSALILDD 1957
              S        S  LD          + N    +  P  + V   ++QAV+ GSA++L D
Sbjct: 613  TLSQSESSVMDSLNLDQLEDVAQASQDINGPARKTAPCTERVLLFMKQAVESGSAVVL-D 671

Query: 1958 DASSNANIVYQSAVEFAKTAPPGPIFRHRTKKATEQAAEQEKHQGIGQIEEVEMVANSNR 2137
            DA+ +A+I+Y+ AV FA++APPGP+FRH+ +K    A ++   Q    +E  E+ A  N+
Sbjct: 672  DATLDADIIYERAVAFARSAPPGPVFRHQPRKV---AVQKNGKQEPANLEVKELKAVPNK 728

Query: 2138 KREGXXXXXXXXXDKLPEILLDVVPHGSLGVDELAKLLS 2254
                           + E  LD+VP GSLGVDELAKLL+
Sbjct: 729  GGNEKQASKTQRIKYIDERHLDIVPRGSLGVDELAKLLA 767


>ref|XP_002332503.1| predicted protein [Populus trichocarpa]
          Length = 699

 Score =  635 bits (1637), Expect = e-179
 Identities = 368/763 (48%), Positives = 475/763 (62%), Gaps = 13/763 (1%)
 Frame = +2

Query: 5    FASPFPLFXXXXXXXXXXXXXXXEVRFSRWNNANAEPFVRRRRQQKEIEDEIRRNRRHQS 184
            F +PFP+F               EV FSRW NANA+ F +R R Q+EIE++I R RR  S
Sbjct: 6    FPTPFPIFAPPSPNPSHRPST--EVHFSRWFNANADKFNQRYRSQQEIEEDISRRRRFTS 63

Query: 185  ASRIXXXXXXXXXXLDFPHSSPAD---FRSRGTPSSPSARSIPGRASKYSKPPVDSKEAR 355
            A+ I           D  +++  D   F+S GTPSSPS+ SIPG+ SKYSKP     +  
Sbjct: 64   ANNIVTNY-------DPKNAAEVDISFFKSTGTPSSPSSPSIPGKKSKYSKP----LKKT 112

Query: 356  HPAFR-RTYRARIP-----PQVDGESGITVGENGIAYRIGGAPFEFQYSYTETPKVKPLG 517
            HPAF  +  R  +P     P +D ++ I + E+G++Y I GAPFEF+YSYTETPKVKPL 
Sbjct: 113  HPAFLPKITRVPLPRNNAKPPIDRKADIKLSEDGVSYVIDGAPFEFKYSYTETPKVKPLK 172

Query: 518  LREAPFLXXXXXXXXXXXXXXAPLPPSKKKLPEFDSFHLPPPGKKGVKSIQSPGPFVAGS 697
            LREAP+               APLPPSKKKL EFDSF LPPP KKGVK +Q+PGPF+ G+
Sbjct: 173  LREAPYAPFGPITMPRPWTGRAPLPPSKKKLREFDSFVLPPPDKKGVKPVQAPGPFLPGA 232

Query: 698  GPKYHATSREEILGEPLTKEEVKDLIKGCMKTRRQLNMGRDGLTHNMLDNIHAHWKRRRV 877
            GP+Y A +REEILG+PLT+EE+++L+ GC+K +RQLNMGRDGLTHNMLDNIHAHWKRRRV
Sbjct: 233  GPRY-AKTREEILGDPLTQEEIQELVDGCLKAKRQLNMGRDGLTHNMLDNIHAHWKRRRV 291

Query: 878  CKIRCLGVSTVDMDNVRQQLEEKTGGKIIYSKGGVIFLFRGRNYNYRTRPRFPLMLWKPV 1057
            CKI+C GV TVDMDNV QQLEE+TGGKIIY KGGV++LFRGRNYNYR RPRFPLMLWKPV
Sbjct: 292  CKIKCKGVCTVDMDNVCQQLEERTGGKIIYRKGGVLYLFRGRNYNYRFRPRFPLMLWKPV 351

Query: 1058 TPVYPRLVQRVPEGLTLEEATQMRKRGRQLLPICKLGKNGVYNRLVYQVREAFEACELVR 1237
            TPVYPRL+QR PEGLTL+EA+ MR +GR+L+PICKLGKNGVY  LV  VREAFE CELVR
Sbjct: 352  TPVYPRLIQRAPEGLTLQEASGMRNKGRKLIPICKLGKNGVYRDLVRNVREAFEECELVR 411

Query: 1238 INCQGMNPSDYKKIGAKLKDLVPCVLLSFEHEHILMWGGKDWKSTLPEIEDNGNGATEXX 1417
            INCQGMN SD++KIGAKL+DLVPCVL+SFE EHILMW G+DWKS+  +  ++G+ A +  
Sbjct: 412  INCQGMNGSDFRKIGAKLRDLVPCVLISFECEHILMWRGRDWKSSFTKPVNDGDEA-KNS 470

Query: 1418 XXXXXXXXXXXXXXFSKEMFDVSAXXXXXXXXXXXXXXKSEDLDAHLEVVETAYVSKSQD 1597
                             E F V                     DA    ++T+ +  ++D
Sbjct: 471  SIDGATSATPLLEGLQNETFSVK--------------------DASTLNLKTSRMD-AED 509

Query: 1598 TDDDLSR----ETASSSDEITNMTSGFSNHQDPSTTYLDTSSSGSGCHAELCEDENQDED 1765
              +DLS+    ET ++   I+  T  + +   P                      + D+ 
Sbjct: 510  QGEDLSQKDIDETFAAKIFISTSTEIYESKTTP----------------------DNDDS 547

Query: 1766 SADIVGSARHDGDDASTRLDTTGVNVGMEMEENNCLPEQKPWLDGVTFLLRQAVDDGSAL 1945
            SA     A      +  +  + G +V  E+ + N     + +  GV  LL+QAV+ GSA+
Sbjct: 548  SAVTKSEAMRIASGSELQNVSEGSHVS-ELAKLN-----ESYTQGVLELLKQAVEIGSAV 601

Query: 1946 ILDDDASSNANIVYQSAVEFAKTAPPGPIFRHRTKKATEQAAEQEKHQGIGQIEEVEMVA 2125
            +L  DA+ +A+ VYQ AV FA++APPGP+FR + +    Q +E +++   G++E  ++ +
Sbjct: 602  VL--DANLDADAVYQKAVAFAQSAPPGPVFRRQPRNTVVQKSEMQEN---GELEVKQVTS 656

Query: 2126 NSNRKREGXXXXXXXXXDKLPEILLDVVPHGSLGVDELAKLLS 2254
             S                   E  +D VP GSL VDELAKLL+
Sbjct: 657  FSKMGGGSERKSSKVRRKYFNEQYVDSVPQGSLRVDELAKLLA 699


>ref|XP_002886005.1| hypothetical protein ARALYDRAFT_480467 [Arabidopsis lyrata subsp.
            lyrata] gi|297331845|gb|EFH62264.1| hypothetical protein
            ARALYDRAFT_480467 [Arabidopsis lyrata subsp. lyrata]
          Length = 700

 Score =  597 bits (1539), Expect = e-168
 Identities = 355/781 (45%), Positives = 465/781 (59%), Gaps = 30/781 (3%)
 Frame = +2

Query: 2    KFASPFPLFXXXXXXXXXXXXXXXEVRFSRWNNANAEPFVRRRRQQKEIEDEIRRNRRHQ 181
            K  +PFP+F               E+RFSRW NANAE F +RRR Q+E+E EIRR+RR  
Sbjct: 4    KLNTPFPIFAPSLFPNHNPRAPS-EIRFSRWGNANAERFEQRRRSQEELEAEIRRDRRFD 62

Query: 182  SASRIXXXXXXXXXXLDFPHSSPADFRSRGTPSSPSARSIPGRASKYSKPPVDSKEARHP 361
            +A++I           + P +SP  FRSRGTPS PSARSIPGR SKYSKP     + ++ 
Sbjct: 63   AATKIVHTHDSEAAASE-PKTSP--FRSRGTPSLPSARSIPGRRSKYSKPDSGPNKPKN- 118

Query: 362  AFRRTYRARIP---PQVDGESGITVGENGIAYRIGGAPFEFQYSYTETPKVKPLGLREAP 532
                  + R+P   PQ+D +  + + E+G++Y I GAPFEF+YSYTETPKVKPL LRE  
Sbjct: 119  ------KPRVPDSPPQLDAKPEVKLSEDGLSYVINGAPFEFKYSYTETPKVKPLKLREPA 172

Query: 533  FLXXXXXXXXXXXXXXAPLPPSKKKLPEFDSFHLPPPGKKGVKSIQSPGPFVAGSGPKYH 712
            +               APLP S+K   EFDSF LPP GKKGVK +Q PGPF  G GP+Y 
Sbjct: 173  YAPFGPTTMGRPWTGRAPLPQSQKTPREFDSFRLPPDGKKGVKPVQKPGPFRPGLGPRYV 232

Query: 713  ATSREEILGEPLTKEEVKDLIKGCMKTRRQLNMGRDGLTHNMLDNIHAHWKRRRVCKIRC 892
             T +EEILGEPLTKEE+++L+  C+KT RQLNMGRDGLTHNML+NIH  WKRRRVCKI+C
Sbjct: 233  YT-KEEILGEPLTKEEIRELVTSCLKTTRQLNMGRDGLTHNMLNNIHDLWKRRRVCKIKC 291

Query: 893  LGVSTVDMDNVRQQLEEKTGGKIIYSKGGVIFLFRGRNYNYRTRPRFPLMLWKPVTPVYP 1072
             GV TVDMD V +QLEEK GGK+IY +GGV+FLFRGRNYN+RTRPRFPLMLWKPV PVYP
Sbjct: 292  KGVCTVDMDKVCEQLEEKIGGKVIYRRGGVLFLFRGRNYNHRTRPRFPLMLWKPVAPVYP 351

Query: 1073 RLVQRVPEGLTLEEATQMRKRGRQLLPICKLGKNGVYNRLVYQVREAFEACELVRINCQG 1252
            RL+Q+VPEGLTL+EAT+MR++GR+L+PICKLGKNGVY  LV  V+EAFE CELVRI+CQG
Sbjct: 352  RLIQQVPEGLTLQEATEMRRKGRELMPICKLGKNGVYCDLVKNVKEAFEVCELVRIDCQG 411

Query: 1253 MNPSDYKKIGAKLKDLVPCVLLSFEHEHILMWGGKDWKS--TLPEIEDNGNGATEXXXXX 1426
            M  SD++KIGAKLKDLVPCVL+SFE+E IL+W G++WKS  T+P+ +D+           
Sbjct: 412  MKGSDFRKIGAKLKDLVPCVLISFENEQILIWRGREWKSSLTIPDKKDD----------- 460

Query: 1427 XXXXXXXXXXXFSKEMFDVSAXXXXXXXXXXXXXXKSEDLDAHLEVVETAYVSKSQDTD- 1603
                          E  +V A                ED +A +   +T  V+++   D 
Sbjct: 461  ------------ILEDIEVDAAL-------------PEDDEASVSPNQTQTVTQNPPLDS 495

Query: 1604 -----DDLSRETASSSDEITNMTSGFSNHQDPSTTYLDTSSSGSGCHAELCEDENQDEDS 1768
                 D    + + S+ + + M    ++ Q PST  L   ++ S    +  E E++ E S
Sbjct: 496  MELQNDPGGHDLSPSTVDFSAMEDTSNSLQSPSTKDLTEPTADSSIQ-DHEEPEHEPETS 554

Query: 1769 ADIVGSARHDGDDASTRLDTTGVNVGMEMEENNCLPEQKPWLDGVTFLLRQAVDDGSALI 1948
             +I                                   K  ++ V  L++QAV+ G+AL+
Sbjct: 555  EEI----------------------------------SKQSIERVLNLMKQAVESGTALV 580

Query: 1949 LDDDASSNANIVYQSAVEFAKTAPPGPIFRHRTKKATEQAAEQEKHQGIGQIE----EVE 2116
            L D A  +A+ V+  AV F+  A PGP+F+H  +K      ++ +  G   +E     V 
Sbjct: 581  L-DAADLDADTVFSKAVTFSTVASPGPVFQHGLRKQPTVKKQESREFGYRNLEAKSSNVV 639

Query: 2117 MVANSNR--------KRE----GXXXXXXXXXDKLPEILLD---VVPHGSLGVDELAKLL 2251
            +  N+++        KRE    G          K+ E   D   V+PHG+L +DELAKLL
Sbjct: 640  VSRNASKSSNVVVSGKREVAVSGEREEKEGLKKKMDEFAEDYREVIPHGTLKLDELAKLL 699

Query: 2252 S 2254
            +
Sbjct: 700  A 700


>ref|NP_565462.1| CRS2-associated factor 1 [Arabidopsis thaliana]
            gi|75266026|sp|Q9SL79.2|CAF1P_ARATH RecName:
            Full=CRS2-associated factor 1, chloroplastic; AltName:
            Full=Chloroplastic group IIA intron splicing facilitator
            CRS2-associated factor 1; Flags: Precursor
            gi|15028051|gb|AAK76556.1| unknown protein [Arabidopsis
            thaliana] gi|20197570|gb|AAD24394.2| expressed protein
            [Arabidopsis thaliana] gi|28393847|gb|AAO42331.1| unknown
            protein [Arabidopsis thaliana]
            gi|330251862|gb|AEC06956.1| CRS2-associated factor 1
            [Arabidopsis thaliana]
          Length = 701

 Score =  581 bits (1498), Expect = e-163
 Identities = 347/771 (45%), Positives = 448/771 (58%), Gaps = 20/771 (2%)
 Frame = +2

Query: 2    KFASPFPLFXXXXXXXXXXXXXXXEVRFSRWNNANAEPFVRRRRQQKEIEDEIRRNRRHQ 181
            K  +PFP+F               E+RFSRW NANAE F +RRR Q+E+E EIRR+RR  
Sbjct: 4    KLNTPFPIFAPSLFPNHNPRAPS-EIRFSRWGNANAERFEQRRRSQEELEAEIRRDRRFD 62

Query: 182  SASRIXXXXXXXXXXLDFPHSSPADFRSRGTPSSPSARSIPGRASKYSKPPVDSKEARHP 361
            +A++I           + P +SP  FRSRGTPS PSARSIPGR SKYSKP  DS   R  
Sbjct: 63   AATKIVHTHDSEAAAAE-PKTSP--FRSRGTPSLPSARSIPGRRSKYSKP--DSGPNRPK 117

Query: 362  AFRRTYRARIPPQVDGESGITVGENGIAYRIGGAPFEFQYSYTETPKVKPLGLREAPFLX 541
               R   +  PPQ+D +  + + E+G+ Y I GAPFEF+YSYTETPKVKPL LRE  +  
Sbjct: 118  NKPRVPDS--PPQLDAKPEVKLSEDGLTYVINGAPFEFKYSYTETPKVKPLKLREPAYAP 175

Query: 542  XXXXXXXXXXXXXAPLPPSKKKLPEFDSFHLPPPGKKGVKSIQSPGPFVAGSGPKYHATS 721
                         APLP S+K   EFDSF LPP GKKG+K +Q PGPF  G GP+Y   S
Sbjct: 176  FGPTTMGRPWTGRAPLPQSQKTPREFDSFRLPPVGKKGLKPVQKPGPFRPGVGPRY-VYS 234

Query: 722  REEILGEPLTKEEVKDLIKGCMKTRRQLNMGRDGLTHNMLDNIHAHWKRRRVCKIRCLGV 901
            +EEILGEPLTKEEV++L+  C+KT RQLNMGRDGLTHNML+NIH  WKRRRVCKI+C GV
Sbjct: 235  KEEILGEPLTKEEVRELVTSCLKTTRQLNMGRDGLTHNMLNNIHDLWKRRRVCKIKCKGV 294

Query: 902  STVDMDNVRQQLEEKTGGKIIYSKGGVIFLFRGRNYNYRTRPRFPLMLWKPVTPVYPRLV 1081
             TVDMDNV +QLEEK GGK+IY +GGV+FLFRGRNYN+RTRPRFPLMLWKPV PVYPRL+
Sbjct: 295  CTVDMDNVCEQLEEKIGGKVIYRRGGVLFLFRGRNYNHRTRPRFPLMLWKPVAPVYPRLI 354

Query: 1082 QRVPEGLTLEEATQMRKRGRQLLPICKLGKNGVYNRLVYQVREAFEACELVRINCQGMNP 1261
            Q+VPEGLT +EAT MR++GR+L+PICKLGKNGVY  LV  V+EAFE CELVRI+CQGM  
Sbjct: 355  QQVPEGLTRQEATNMRRKGRELMPICKLGKNGVYCDLVKNVKEAFEVCELVRIDCQGMKG 414

Query: 1262 SDYKKIGAKLKDLVPCVLLSFEHEHILMWGGKDWKSTLPEIEDNGNGATEXXXXXXXXXX 1441
            SD++KIGAKLKDLVPCVL+SFE+E IL+W G++WKS+L   +  G+              
Sbjct: 415  SDFRKIGAKLKDLVPCVLVSFENEQILIWRGREWKSSLTTPDKKGD-------------- 460

Query: 1442 XXXXXXFSKEMFDVSAXXXXXXXXXXXXXXKSEDLDAHLEVVETAYVSKSQDTDDDLSRE 1621
                                            ED++    + E    S S +    +++ 
Sbjct: 461  ------------------------------ILEDIEVDTALPEDDEPSVSPNQSQTMTQN 490

Query: 1622 TASSSDEITNMTSGFSNHQDPSTTYLDTSSSGSGCHAELCEDENQDEDSADIVGSARHDG 1801
                S E+ N   G     D S + +D+S      ++   +  +  + +   V S   D 
Sbjct: 491  PPLDSMELQNDPDG----HDLSPSTVDSSEMEGTINS--LQSWSTKDVTEPTVDSFLRDL 544

Query: 1802 DDASTRLDTTGVNVGMEMEENNCLPEQKPWLDGVTFLLRQAVDDGSALILDDDASSNANI 1981
            ++     +T+       +E    L +Q   ++  T L+  A D      LD D       
Sbjct: 545  EEPEDEPETSEEISKQSIERVLILMKQA--VESGTALVLDAAD------LDADT------ 590

Query: 1982 VYQSAVEFAKTAPPGPIFRHRTKKATEQAAEQEKHQGIGQIE----EVEMVANSNR---- 2137
            V+  AV F+  A PGP+F+H  +K      ++ +  G G +E     V +  N+++    
Sbjct: 591  VFSKAVAFSSVASPGPVFQHGLRKQPTVKKQESQEFGYGDLEAKSSNVVVSRNASKSSNV 650

Query: 2138 ------------KREGXXXXXXXXXDKLPEILLDVVPHGSLGVDELAKLLS 2254
                        +RE          D+  E   +V+PHG+L VDELAKLL+
Sbjct: 651  VVFGKREVAERGEREEKEEGSKKKMDEFAEDYREVMPHGTLKVDELAKLLA 701


>ref|XP_003532480.1| PREDICTED: CRS2-associated factor 1, chloroplastic-like [Glycine max]
          Length = 723

 Score =  579 bits (1492), Expect = e-162
 Identities = 339/696 (48%), Positives = 424/696 (60%), Gaps = 38/696 (5%)
 Frame = +2

Query: 281  SPSARSIPGRA--SKYSKPPVDSKEAR--HPAFRRTYRARIPPQ-VDGE-SGITVGENGI 442
            SP+AR  P     +K SK P   K  R  HPAFR +   +  PQ V G    + + ++G+
Sbjct: 41   SPNARRTPRPTGPAKRSKSPARPKVDRQSHPAFRFSNIPKSKPQRVSGAPENVKISDDGL 100

Query: 443  AYRIGGAPFEFQYSYTETPKVKPLGLREAPFLXXXXXXXXXXXXXXAPLPPSKKKLPEFD 622
            +Y I GAPFEF+YSYTETPKVKP+ +REAPF+              APLP SKKKL EFD
Sbjct: 101  SYVIDGAPFEFKYSYTETPKVKPIKMREAPFVPFGPDTMPRPWTGRAPLPASKKKLKEFD 160

Query: 623  SFHLPPPGKKGVKSIQSPGPFVAGSGPKYHATSREEILGEPLTKEEVKDLIKGCMKTRRQ 802
            SF LPPP KKGVK +QSPGP++AG+GP+Y   SREEILGEPLT+EE++DL+K CMK +RQ
Sbjct: 161  SFVLPPPHKKGVKPVQSPGPYLAGTGPRY-VKSREEILGEPLTQEEIRDLVKSCMKAQRQ 219

Query: 803  LNMGRDGLTHNMLDNIHAHWKRRRVCKIRCLGVSTVDMDNVRQQLEEKTGGKIIYSKGGV 982
            LN+GRDGLTHNMLDNIHAHWKRRR CKIRC GV TVDMDNV  QLEE+TGGKII+ KGGV
Sbjct: 220  LNIGRDGLTHNMLDNIHAHWKRRRACKIRCKGVCTVDMDNVCHQLEERTGGKIIHRKGGV 279

Query: 983  IFLFRGRNYNYRTRPRFPLMLWKPVTPVYPRLVQRVPEGLTLEEATQMRKRGRQLLPICK 1162
            ++LFRGRNYNY+TRP FPLMLWKPV PVYPRLVQRVPEGLTLEEAT+MR++G  L+PICK
Sbjct: 280  LYLFRGRNYNYKTRPHFPLMLWKPVPPVYPRLVQRVPEGLTLEEATKMRQKGSTLIPICK 339

Query: 1163 LGKNGVYNRLVYQVREAFEACELVRINCQGMNPSDYKKIGAKLKDLVPCVLLSFEHEHIL 1342
            LGKNGVY  LV  VREAFE CELVRINCQG+N SDY+KIGAKL+DLVPC LLSFE+EHIL
Sbjct: 340  LGKNGVYCDLVKTVREAFEECELVRINCQGLNKSDYRKIGAKLRDLVPCTLLSFEYEHIL 399

Query: 1343 MWGGKDWKSTLPEIEDNGNGATE-XXXXXXXXXXXXXXXXFSKEMFDVSAXXXXXXXXXX 1519
            MW G +WKS++P+  D+   + +                 FS     ++           
Sbjct: 400  MWRGPNWKSSIPDRGDDRKESKQIEVDHKNYKPLPSEALEFSAPSLQMN-PLEHESNLLH 458

Query: 1520 XXXXKSEDLDAHLEVVETAYVSKSQ-------------------DTDDDLSRETASSSDE 1642
                 S   D  L+ VE +Y +++                    +T +D +   A     
Sbjct: 459  DTSISSISSDVTLDKVEVSYPNENSHQSMSGVTEVPSLTKIYDVETTNDSTDSYAEPEPR 518

Query: 1643 ITNMTSGFSNHQDPSTTYLDTSSSGSGCHAELCEDEN-QDEDSADIVGS-ARHDGDDAST 1816
             + + S    H D    +   + S S     + + ++  D  SA I GS A   G D ST
Sbjct: 519  TSLIPSMTIPHYDSHAEFSSKAMSESHGTEHIMDSKSCSDGLSASISGSHATLGGSDNST 578

Query: 1817 R----------LDTTGVNVGMEMEENNCLPEQKPWLDGVTFLLRQAVDDGSALILDDDAS 1966
                       LD  G     E + +       P +  +  LL QAV+ GSAL+LD D S
Sbjct: 579  NGMVDSHSNKLLDALG-----EEDVSQAPRSAAPSMKAIWLLLEQAVEKGSALVLDKD-S 632

Query: 1967 SNANIVYQSAVEFAKTAPPGPIFRHRTKKATEQAAEQEKHQGIGQIEEVEMVANSNRKRE 2146
             +A+ +YQ+ V FAK+APPGP FR  TK  +++  +QE     G   E +     + KR+
Sbjct: 633  LDADNIYQNTVAFAKSAPPGPAFRKNTKAVSQKNPKQE-----GSTLETKETTIDSMKRK 687

Query: 2147 GXXXXXXXXXDKLPEILLDVVPHGSLGVDELAKLLS 2254
                          + LL+VVP G+LGVDELAKLL+
Sbjct: 688  KENSTKIPRKANFDDQLLNVVPQGTLGVDELAKLLT 723


>ref|XP_006494323.1| PREDICTED: CRS2-associated factor 1, chloroplastic-like [Citrus
            sinensis]
          Length = 837

 Score =  578 bits (1491), Expect = e-162
 Identities = 288/452 (63%), Positives = 343/452 (75%), Gaps = 6/452 (1%)
 Frame = +2

Query: 74   EVRFSRWNNANAEPFVRRRRQQKEIEDEIRRNRRHQSASRIXXXXXXXXXXLDFPHSSPA 253
            E+RFSRWNNANAE F +RRR Q+EIED+IRR+RR  SA++I               ++  
Sbjct: 34   EIRFSRWNNANAEEFNQRRRAQQEIEDDIRRHRRFDSATKITQSYDSSTSTA----TNGV 89

Query: 254  DFRSRGTPSSPSARSIPGRASKYSKPPVDSKEARHPAFRRTYRARIPPQVDGE------S 415
             F+S GTPSSPS  SIPGR SKYSKP  +S    HPAFR+  +         E      S
Sbjct: 90   AFKSAGTPSSPSRPSIPGRKSKYSKPATNSS-VDHPAFRKISKREKTTNKSPEKPAASKS 148

Query: 416  GITVGENGIAYRIGGAPFEFQYSYTETPKVKPLGLREAPFLXXXXXXXXXXXXXXAPLPP 595
             I++ E+G++Y I GAPFEF+YSYTE PK KPL LREA F               APLPP
Sbjct: 149  NISITEDGLSYVIDGAPFEFKYSYTEAPKAKPLKLREAAFSPFGPTTMGRPWTGRAPLPP 208

Query: 596  SKKKLPEFDSFHLPPPGKKGVKSIQSPGPFVAGSGPKYHATSREEILGEPLTKEEVKDLI 775
            SKKKL EFDSF LPPP KKGVK +Q PGP++ G+GP+Y +T REEILGEPLT EEV++L+
Sbjct: 209  SKKKLKEFDSFQLPPPNKKGVKPVQKPGPYLPGTGPRYVST-REEILGEPLTAEEVRELV 267

Query: 776  KGCMKTRRQLNMGRDGLTHNMLDNIHAHWKRRRVCKIRCLGVSTVDMDNVRQQLEEKTGG 955
            +   ++ RQLNMGRDGLTHNMLDNIHAHWKRRR CKI+C GV TVDMDNV +QLEE+TGG
Sbjct: 268  ESVKRSSRQLNMGRDGLTHNMLDNIHAHWKRRRACKIKCKGVCTVDMDNVCEQLEERTGG 327

Query: 956  KIIYSKGGVIFLFRGRNYNYRTRPRFPLMLWKPVTPVYPRLVQRVPEGLTLEEATQMRKR 1135
            KIIY +GGV++LFRGRNYNYR RP FPLMLWKP+TPVYPRL+Q+VP+GLTLEEAT+MRK+
Sbjct: 328  KIIYRRGGVLYLFRGRNYNYRNRPHFPLMLWKPITPVYPRLIQQVPDGLTLEEATEMRKK 387

Query: 1136 GRQLLPICKLGKNGVYNRLVYQVREAFEACELVRINCQGMNPSDYKKIGAKLKDLVPCVL 1315
            GR+L+PICKLGKNGVY  L   VREAFE CELVRINCQGMN SDY+KIGAKL+DLVPCVL
Sbjct: 388  GRKLIPICKLGKNGVYCDLAKNVREAFEVCELVRINCQGMNGSDYRKIGAKLRDLVPCVL 447

Query: 1316 LSFEHEHILMWGGKDWKSTLPEIEDNGNGATE 1411
            +SFE EHILMW G++WKS++ +  ++   A E
Sbjct: 448  ISFEREHILMWRGQEWKSSILKPGNDSEDAKE 479



 Score = 86.7 bits (213), Expect = 5e-14
 Identities = 76/251 (30%), Positives = 116/251 (46%), Gaps = 18/251 (7%)
 Frame = +2

Query: 1556 LEVVETAYVSKSQDTDDDLSRETASSSDEITNMTSGFSNHQDPSTT-----YLDTSSSGS 1720
            +E+ ET   +   +   D  +    +  ++ N   G    +  S T      LD   S  
Sbjct: 598  MEINETISATGCSNDKSDAMKNIFENVSKLENSGVGNDTSEPVSDTNECQTVLDNKGSVL 657

Query: 1721 GCHAELC---------EDENQDEDSADIVGSARHDGDDASTRLDTTGVNVGMEMEENNCL 1873
            G  A L           +  +D+     VGS  HD     + +           E++N L
Sbjct: 658  GESAALSVGSETTLGSAESTRDQSEHFYVGSLNHDYQQNPSEVP----------EDHNVL 707

Query: 1874 PE-QKPWLDGVTFLLRQAVDDGSALILDDDASSNANIVYQSAVEFAKTAPPGPIFRHRTK 2050
                 P L+ V  L+RQAV++GSA++LDD A+ +A+ +Y+ +V FAK+APPGP+F+ R++
Sbjct: 708  TRLHGPSLEIVLHLMRQAVENGSAVVLDD-ATLDADSIYERSVAFAKSAPPGPVFQQRSR 766

Query: 2051 KATEQAAEQEKHQGIGQIEEV-EMVANSNRKREGXXXXXXXXXDKLPEILLDVV--PHGS 2221
            K   Q  E+++   +    EV  MV + NR                 E  LDVV  P GS
Sbjct: 767  KIAIQKGEKKEAGHLKMKREVPNMVVSENRGNVRQSNRKKTKNSDEIEHGLDVVLSPQGS 826

Query: 2222 LGVDELAKLLS 2254
            L +DELAKLL+
Sbjct: 827  LKIDELAKLLA 837


>ref|XP_006451251.1| hypothetical protein CICLE_v100106541mg, partial [Citrus clementina]
            gi|557554477|gb|ESR64491.1| hypothetical protein
            CICLE_v100106541mg, partial [Citrus clementina]
          Length = 825

 Score =  578 bits (1491), Expect = e-162
 Identities = 288/452 (63%), Positives = 343/452 (75%), Gaps = 6/452 (1%)
 Frame = +2

Query: 74   EVRFSRWNNANAEPFVRRRRQQKEIEDEIRRNRRHQSASRIXXXXXXXXXXLDFPHSSPA 253
            E+RFSRWNNANAE F +RRR Q+EIED+IRR+RR  SA++I               ++  
Sbjct: 40   EIRFSRWNNANAEEFNQRRRAQQEIEDDIRRHRRFDSATKITQSYDSSTSTA----TNGV 95

Query: 254  DFRSRGTPSSPSARSIPGRASKYSKPPVDSKEARHPAFRRTYRARIPPQVDGE------S 415
             F+S GTPSSPS  SIPGR SKYSKP  +S    HPAFR+  +         E      S
Sbjct: 96   AFKSAGTPSSPSRPSIPGRKSKYSKPATNSS-VDHPAFRKISKREKTTNKSPEKPAASKS 154

Query: 416  GITVGENGIAYRIGGAPFEFQYSYTETPKVKPLGLREAPFLXXXXXXXXXXXXXXAPLPP 595
             I++ E+G++Y I GAPFEF+YSYTE PK KPL LREA F               APLPP
Sbjct: 155  NISITEDGLSYVIDGAPFEFKYSYTEAPKAKPLKLREAAFSPFGPTTMGRPWTGRAPLPP 214

Query: 596  SKKKLPEFDSFHLPPPGKKGVKSIQSPGPFVAGSGPKYHATSREEILGEPLTKEEVKDLI 775
            SKKKL EFDSF LPPP KKGVK +Q PGP++ G+GP+Y +T REEILGEPLT EEV++L+
Sbjct: 215  SKKKLKEFDSFQLPPPNKKGVKPVQKPGPYLPGTGPRYVST-REEILGEPLTAEEVRELV 273

Query: 776  KGCMKTRRQLNMGRDGLTHNMLDNIHAHWKRRRVCKIRCLGVSTVDMDNVRQQLEEKTGG 955
            +   ++ RQLNMGRDGLTHNMLDNIHAHWKRRR CKI+C GV TVDMDNV +QLEE+TGG
Sbjct: 274  ESVKRSSRQLNMGRDGLTHNMLDNIHAHWKRRRACKIKCKGVCTVDMDNVCEQLEERTGG 333

Query: 956  KIIYSKGGVIFLFRGRNYNYRTRPRFPLMLWKPVTPVYPRLVQRVPEGLTLEEATQMRKR 1135
            KIIY +GGV++LFRGRNYNYR RP FPLMLWKP+TPVYPRL+Q+VP+GLTLEEAT+MRK+
Sbjct: 334  KIIYRRGGVLYLFRGRNYNYRNRPHFPLMLWKPITPVYPRLIQQVPDGLTLEEATEMRKK 393

Query: 1136 GRQLLPICKLGKNGVYNRLVYQVREAFEACELVRINCQGMNPSDYKKIGAKLKDLVPCVL 1315
            GR+L+PICKLGKNGVY  L   VREAFE CELVRINCQGMN SDY+KIGAKL+DLVPCVL
Sbjct: 394  GRKLIPICKLGKNGVYCDLAKNVREAFEVCELVRINCQGMNGSDYRKIGAKLRDLVPCVL 453

Query: 1316 LSFEHEHILMWGGKDWKSTLPEIEDNGNGATE 1411
            +SFE EHILMW G++WKS++ +  ++   A E
Sbjct: 454  ISFEREHILMWRGQEWKSSILKPGNDSEDAKE 485



 Score = 72.8 bits (177), Expect = 8e-10
 Identities = 60/210 (28%), Positives = 98/210 (46%), Gaps = 16/210 (7%)
 Frame = +2

Query: 1556 LEVVETAYVSKSQDTDDDLSRETASSSDEITNMTSGFSNHQDPSTT-----YLDTSSSGS 1720
            +E+ ET   +   +   D  +    +  ++ N   G    +  S T      LD   S  
Sbjct: 604  MEINETISATGCSNDKSDAMKNIFENVSKLENSGVGNDTSEPVSDTNECQTVLDNKGSVL 663

Query: 1721 GCHAELC---------EDENQDEDSADIVGSARHDGDDASTRLDTTGVNVGMEMEENNCL 1873
            G  A L           +  +D+     VGS  HD     + +           E++N L
Sbjct: 664  GESAALSVGSETTLGSAESTRDQSEHFYVGSLNHDYQQNPSEVP----------EDHNVL 713

Query: 1874 PE-QKPWLDGVTFLLRQAVDDGSALILDDDASSNANIVYQSAVEFAKTAPPGPIFRHRTK 2050
                 P L+ V  L+RQAV++GSA++LDD A+ +A+ +Y+ +V FAK+APPGP+F+ R++
Sbjct: 714  TRLHGPSLEIVLHLMRQAVENGSAVVLDD-ATLDADSIYERSVAFAKSAPPGPVFQQRSR 772

Query: 2051 KATEQAAEQEKHQGIGQIEEV-EMVANSNR 2137
            K   Q  E+++   +    EV  MV + NR
Sbjct: 773  KIAIQKGEKKEAGHLKMKREVPNMVVSENR 802


>gb|ESW32299.1| hypothetical protein PHAVU_002G310400g [Phaseolus vulgaris]
          Length = 726

 Score =  573 bits (1478), Expect = e-160
 Identities = 328/710 (46%), Positives = 420/710 (59%), Gaps = 42/710 (5%)
 Frame = +2

Query: 248  PADFRSRGTPSSPSARSIPGRASKYSKPPVDSKEARHPAFRRTYRARIPPQ--VDGESGI 421
            P + R    PS P+ RS         +P VD +   HPA R +   +  P+        +
Sbjct: 45   PPNARRTNRPSGPAKRS-----KSPQRPNVDPQS--HPALRFSNIPKSKPRRITSAPDNV 97

Query: 422  TVGENGIAYRIGGAPFEFQYSYTETPKVKPLGLREAPFLXXXXXXXXXXXXXXAPLPPSK 601
             + ++G++Y I GAPFEF+YSYTETPK KP+ +REAPFL              APLPPSK
Sbjct: 98   KISDDGLSYVIDGAPFEFKYSYTETPKAKPIKIREAPFLPFGPATMPRPWTGRAPLPPSK 157

Query: 602  KKLPEFDSFHLPPPGKKGVKSIQSPGPFVAGSGPKYHATSREEILGEPLTKEEVKDLIKG 781
            KKL EFDSF LPPP KKGVK +QSPGP++ G+GP+Y   SREEILGEPLTKEE+++L+  
Sbjct: 158  KKLKEFDSFELPPPHKKGVKPVQSPGPYLRGTGPRY-VKSREEILGEPLTKEEIRELVNS 216

Query: 782  CMKTRRQLNMGRDGLTHNMLDNIHAHWKRRRVCKIRCLGVSTVDMDNVRQQLEEKTGGKI 961
            CMKT+RQLNMGRDG THNMLDNIHAHWKRRRVCKIRCLGV TVDMDNV QQLEEKTGGK+
Sbjct: 217  CMKTQRQLNMGRDGFTHNMLDNIHAHWKRRRVCKIRCLGVCTVDMDNVCQQLEEKTGGKV 276

Query: 962  IYSKGGVIFLFRGRNYNYRTRPRFPLMLWKPVTPVYPRLVQRVPEGLTLEEATQMRKRGR 1141
            I+ +GG ++LFRGRNYN++TRPRFPLMLWKPV+PVYP L+ RVP+GLTLEE T+MR++GR
Sbjct: 277  IFRRGGKVYLFRGRNYNHKTRPRFPLMLWKPVSPVYPSLIPRVPKGLTLEEVTKMREKGR 336

Query: 1142 QLLPICKLGKNGVYNRLVYQVREAFEACELVRINCQGMNPSDYKKIGAKLKDLVPCVLLS 1321
             L+PIC+LGKNGVY  LV  VREAFE C+LVRINCQG+N SDY+KIGAKL+DLVPC L+S
Sbjct: 337  TLIPICQLGKNGVYYYLVNTVREAFEECDLVRINCQGLNKSDYRKIGAKLRDLVPCTLIS 396

Query: 1322 FEHEHILMWGGKDWKSTLPEIEDNGNGATEXXXXXXXXXXXXXXXXFSKEMFDVSAXXXX 1501
            F++EHILMW G +WKS++P++ D+   A +                 S E  ++SA    
Sbjct: 397  FQYEHILMWRGPNWKSSIPDLGDDLKEANKIVDDKHFETR-------SSEALEISAPGLQ 449

Query: 1502 XXXXXXXXXXKSE------DLDAHLEVVETAYVSKSQDTDDDLSRETASSSDEITNMTSG 1663
                        +         A L+ VE  Y +++       SR++ S   E+T++T  
Sbjct: 450  KNPVEHASNFSHDASISSCSSAATLDKVEVPYPNEN-------SRQSVSEVTELTSLTKV 502

Query: 1664 FS-----------------NHQDPSTTYLDTSSSGSGCHAELCEDENQDEDSADIVG--- 1783
            +                      PS T+ + SS  S   +    D +  ED  D      
Sbjct: 503  YEVETANVATDSCAQPDPCTSPSPSMTFYNNSSEDS---SRAMSDNHGAEDIMDSQTCCG 559

Query: 1784 --SARHDGDDASTRLDTTGVNVGMEMEENNCLP------------EQKPWLDGVTFLLRQ 1921
              SA   G DA+       +N  ++   +  L                P +  +  L  Q
Sbjct: 560  GLSASISGSDANVGGGDNYINGMVDPHSDELLDALGEADVSQLPRSAAPCMKEILLLFEQ 619

Query: 1922 AVDDGSALILDDDASSNANIVYQSAVEFAKTAPPGPIFRHRTKKATEQAAEQEKHQGIGQ 2101
            AV+ GSAL+LD D S +A+ +YQ  V FAK+A PGPIF    K      A Q+ H+  G 
Sbjct: 620  AVEKGSALVLDKD-SLDADNIYQKTVAFAKSASPGPIFGKHRKSPD---AVQKSHKKEGS 675

Query: 2102 IEEVEMVANSNRKREGXXXXXXXXXDKLPEILLDVVPHGSLGVDELAKLL 2251
              E +     + KRE              + LL+VVP G+LGVDELAKLL
Sbjct: 676  TLETKETTTVSTKREKAKSTKISRKANFDDQLLNVVPQGTLGVDELAKLL 725


>gb|EEC70705.1| hypothetical protein OsI_02075 [Oryza sativa Indica Group]
          Length = 701

 Score =  569 bits (1467), Expect = e-159
 Identities = 321/685 (46%), Positives = 417/685 (60%), Gaps = 34/685 (4%)
 Frame = +2

Query: 302  PGRASKYSKPPVDSKEARHPAFRRTYRAR-----IPPQVDGESGITVGENGIAYRIGGAP 466
            P   +K  + P  S    HPAF    R R     IP   +  +G+ V E G+AY + GAP
Sbjct: 36   PAAVAKRRRAPAPS----HPAFSSVIRGRPKKVPIPENGEPAAGVRVTERGLAYHLDGAP 91

Query: 467  FEFQYSYTETPKVKPLGLREAPFLXXXXXXXXXXXXXXAPLPPSKKKLPEFDSFHLPPPG 646
            FEFQYSYTETP+ +P+ LREAPFL               PLP S+K+LPEFDSF LPPPG
Sbjct: 92   FEFQYSYTETPRARPVALREAPFLPFGPEVTPRPWTGRKPLPKSRKELPEFDSFMLPPPG 151

Query: 647  KKGVKSIQSPGPFVAGSGPKYHATSREEILGEPLTKEEVKDLIKGCMKTRRQLNMGRDGL 826
            KKGVK +QSPGPF+AG+ P+Y A SREE+LGEPLTKEEV +L+K  +KT+RQLN+GRDGL
Sbjct: 152  KKGVKPVQSPGPFLAGTEPRYQAASREEVLGEPLTKEEVDELVKATLKTKRQLNIGRDGL 211

Query: 827  THNMLDNIHAHWKRRRVCKIRCLGVSTVDMDNVRQQLEEKTGGKIIYSKGGVIFLFRGRN 1006
            THNML+NIH+HWKR+RVCKI+C GV TVDMDNV QQLEEK GGK+I+ +GGVIFLFRGRN
Sbjct: 212  THNMLENIHSHWKRKRVCKIKCKGVCTVDMDNVCQQLEEKVGGKVIHHQGGVIFLFRGRN 271

Query: 1007 YNYRTRPRFPLMLWKPVTPVYPRLVQRVPEGLTLEEATQMRKRGRQLLPICKLGKNGVYN 1186
            YNYRTRP +PLMLWKP  PVYPRLV+++P+GLT +EA  MRKRGRQL PICKLGKNGVY 
Sbjct: 272  YNYRTRPIYPLMLWKPAAPVYPRLVKKIPDGLTPDEAEDMRKRGRQLPPICKLGKNGVYL 331

Query: 1187 RLVYQVREAFEACELVRINCQGMNPSDYKKIGAKLKDLVPCVLLSFEHEHILMWGGKDWK 1366
             LV QVREAFEAC+LVR++C G+N SD +KIGAKLKDLVPC LLSFE EHILMW G DWK
Sbjct: 332  NLVKQVREAFEACDLVRVDCSGLNKSDCRKIGAKLKDLVPCTLLSFEFEHILMWRGNDWK 391

Query: 1367 STLPEIEDNGNGATEXXXXXXXXXXXXXXXXFSKEMFDVSAXXXXXXXXXXXXXXK---- 1534
            S+LP +E+N                       SKE    SA              K    
Sbjct: 392  SSLPPLEENDFKVASDQILN------------SKEAGSGSALTPIELVNNATSLKKCNLI 439

Query: 1535 --SEDLDAHLE-------VVETAYVSKSQDTDDDLSRETASSSDEITNMTSGFSNHQDPS 1687
              +E L+  ++       ++ +A  +      + +    +S+   I    S  +   DPS
Sbjct: 440  EGAEKLEDSMKSSFENGMILGSACANPGVCNSEGIDGTESSADAPIEFSPSNSARDLDPS 499

Query: 1688 TT--------YLDTSSSGS--GCHAELCEDENQDEDSAD----IVGSARHDGDDASTRLD 1825
             T         LD S +G     + + C +  Q  D  +    ++GS+    +  + R +
Sbjct: 500  QTSTLYCQSSLLDKSENGELIEMYPDRCGNSEQSPDVPEALTCLMGSSDEIHELETMRRN 559

Query: 1826 TTGVNVGMEMEENNCLPEQKPWLDGVTFLLRQAVDDGSALILDDDASSNANIVYQSAVEF 2005
               +N    +  ++ +P    +++G+  L +QA+D G AL+L+++  ++AN VYQ +V F
Sbjct: 560  CKHLNGSDGVNSDSIVPS---YMEGILLLFKQAIDSGMALVLNENEFADANYVYQKSVAF 616

Query: 2006 AKTAPPGPIFRHRTKKA-TEQAAEQEKHQGIGQIEEVEMVANSNRKRE-GXXXXXXXXXD 2179
             KTAP   + RH  +K+   Q  E  K+  I +  E   V++  +K+E           D
Sbjct: 617  TKTAPRYLVLRHTPRKSHGTQKTEPAKNVRINKHLEEHKVSDHVKKKEIVMGGSRMQRND 676

Query: 2180 KLPEILLDVVPHGSLGVDELAKLLS 2254
               E L DVVP G+L VDELAKLL+
Sbjct: 677  HAREFLSDVVPQGTLRVDELAKLLA 701


>ref|NP_001043122.1| Os01g0495900 [Oryza sativa Japonica Group]
            gi|75109409|sp|Q5VMQ5.1|CAF1P_ORYSJ RecName:
            Full=CRS2-associated factor 1, chloroplastic; AltName:
            Full=Chloroplastic group IIA intron splicing facilitator
            CRS2-associated factor 1; Flags: Precursor
            gi|55297418|dbj|BAD69270.1| putative CRS2-associated
            factor 1 [Oryza sativa Japonica Group]
            gi|55297612|dbj|BAD68987.1| putative CRS2-associated
            factor 1 [Oryza sativa Japonica Group]
            gi|113532653|dbj|BAF05036.1| Os01g0495900 [Oryza sativa
            Japonica Group] gi|215694476|dbj|BAG89423.1| unnamed
            protein product [Oryza sativa Japonica Group]
            gi|222618506|gb|EEE54638.1| hypothetical protein
            OsJ_01906 [Oryza sativa Japonica Group]
          Length = 701

 Score =  568 bits (1464), Expect = e-159
 Identities = 321/685 (46%), Positives = 417/685 (60%), Gaps = 34/685 (4%)
 Frame = +2

Query: 302  PGRASKYSKPPVDSKEARHPAFRRTYRAR-----IPPQVDGESGITVGENGIAYRIGGAP 466
            P   +K  + P  S    HPAF    R R     IP   +  +G+ V E G+AY + GAP
Sbjct: 36   PAAVAKRRRAPAPS----HPAFSSVIRGRPKKVPIPENGEPAAGVRVTERGLAYHLDGAP 91

Query: 467  FEFQYSYTETPKVKPLGLREAPFLXXXXXXXXXXXXXXAPLPPSKKKLPEFDSFHLPPPG 646
            FEFQYSYTETP+ +P+ LREAPFL               PLP S+K+LPEFDSF LPPPG
Sbjct: 92   FEFQYSYTETPRARPVALREAPFLPFGPEVTPRPWTGRKPLPKSRKELPEFDSFMLPPPG 151

Query: 647  KKGVKSIQSPGPFVAGSGPKYHATSREEILGEPLTKEEVKDLIKGCMKTRRQLNMGRDGL 826
            KKGVK +QSPGPF+AG+ P+Y A SREE+LGEPLTKEEV +L+K  +KT+RQLN+GRDGL
Sbjct: 152  KKGVKPVQSPGPFLAGTEPRYQAASREEVLGEPLTKEEVDELVKATLKTKRQLNIGRDGL 211

Query: 827  THNMLDNIHAHWKRRRVCKIRCLGVSTVDMDNVRQQLEEKTGGKIIYSKGGVIFLFRGRN 1006
            THNML+NIH+HWKR+RVCKI+C GV TVDMDNV QQLEEK GGK+I+ +GGVIFLFRGRN
Sbjct: 212  THNMLENIHSHWKRKRVCKIKCKGVCTVDMDNVCQQLEEKVGGKVIHHQGGVIFLFRGRN 271

Query: 1007 YNYRTRPRFPLMLWKPVTPVYPRLVQRVPEGLTLEEATQMRKRGRQLLPICKLGKNGVYN 1186
            YNYRTRP +PLMLWKP  PVYPRLV+++P+GLT +EA  MRKRGRQL PICKLGKNGVY 
Sbjct: 272  YNYRTRPIYPLMLWKPAAPVYPRLVKKIPDGLTPDEAEDMRKRGRQLPPICKLGKNGVYL 331

Query: 1187 RLVYQVREAFEACELVRINCQGMNPSDYKKIGAKLKDLVPCVLLSFEHEHILMWGGKDWK 1366
             LV QVREAFEAC+LVR++C G+N SD +KIGAKLKDLVPC LLSFE EHILMW G DWK
Sbjct: 332  NLVKQVREAFEACDLVRVDCSGLNKSDCRKIGAKLKDLVPCTLLSFEFEHILMWRGNDWK 391

Query: 1367 STLPEIEDNGNGATEXXXXXXXXXXXXXXXXFSKEMFDVSAXXXXXXXXXXXXXXK---- 1534
            S+LP +E+N                       SKE    SA              K    
Sbjct: 392  SSLPPLEENDFKVASDQILN------------SKEAGSGSALTPIELVNNATSLKKCNLI 439

Query: 1535 --SEDLDAHLE-------VVETAYVSKSQDTDDDLSRETASSSDEITNMTSGFSNHQDPS 1687
              +E L+  ++       ++ +A  +      + +    +S+   I    S  +   DPS
Sbjct: 440  EGAEKLEDSMKSSFENGMILGSACGNPGVCNSEGIDGTESSADAPIEFSPSNSARDLDPS 499

Query: 1688 TT--------YLDTSSSGS--GCHAELCEDENQDEDSAD----IVGSARHDGDDASTRLD 1825
             T         LD S +G     + + C +  Q  D  +    ++GS+    +  + R +
Sbjct: 500  QTSTLYCQSSLLDKSENGELIEMYPDRCGNSEQSPDVPEALTCLMGSSDEIHELETMRRN 559

Query: 1826 TTGVNVGMEMEENNCLPEQKPWLDGVTFLLRQAVDDGSALILDDDASSNANIVYQSAVEF 2005
               +N    +  ++ +P    +++G+  L +QA+D G AL+L+++  ++AN VYQ +V F
Sbjct: 560  CKHLNGSDGVNSDSIVPS---YMEGILLLFKQAIDSGMALVLNENEFADANYVYQKSVAF 616

Query: 2006 AKTAPPGPIFRHRTKKA-TEQAAEQEKHQGIGQIEEVEMVANSNRKRE-GXXXXXXXXXD 2179
             KTAP   + RH  +K+   Q  E  K+  I +  E   V++  +K+E           D
Sbjct: 617  TKTAPRYLVLRHTPRKSHGTQKTEPAKNVRINKHLEEHKVSDHVKKKEIVMGGSRMQRND 676

Query: 2180 KLPEILLDVVPHGSLGVDELAKLLS 2254
               E L DVVP G+L VDELAKLL+
Sbjct: 677  HAREFLSDVVPQGTLRVDELAKLLA 701