BLASTX nr result
ID: Zingiber24_contig00011109
seq
BLASTX 2.2.25 [Feb-01-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= Zingiber24_contig00011109
(626 letters)
Database: ./nr
37,332,560 sequences; 13,225,080,153 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
ref|XP_002265433.2| PREDICTED: uncharacterized protein LOC100262... 212 6e-53
emb|CBI37628.3| unnamed protein product [Vitis vinifera] 204 2e-50
gb|EOX92591.1| Transcription elongation factor (TFIIS) family pr... 202 6e-50
ref|XP_002279514.1| PREDICTED: uncharacterized protein LOC100260... 202 8e-50
ref|XP_002279496.2| PREDICTED: uncharacterized protein LOC100260... 199 4e-49
ref|XP_004141981.1| PREDICTED: probable mediator of RNA polymera... 198 9e-49
gb|ABA95891.2| transcription elongation factor, putative, expres... 198 1e-48
ref|NP_001066244.1| Os12g0165700 [Oryza sativa Japonica Group] g... 198 1e-48
gb|EAZ19760.1| hypothetical protein OsJ_35339 [Oryza sativa Japo... 198 1e-48
gb|EOY19919.1| Transcription elongation factor (TFIIS) family pr... 197 3e-48
ref|XP_002530078.1| conserved hypothetical protein [Ricinus comm... 196 6e-48
ref|XP_003578864.1| PREDICTED: uncharacterized protein LOC100832... 193 3e-47
ref|XP_006664368.1| PREDICTED: probable mediator of RNA polymera... 192 5e-47
ref|XP_002329469.1| predicted protein [Populus trichocarpa] gi|5... 191 1e-46
gb|EXB36907.1| hypothetical protein L484_016512 [Morus notabilis] 190 3e-46
ref|XP_006427873.1| hypothetical protein CICLE_v10025964mg [Citr... 189 7e-46
ref|XP_004249876.1| PREDICTED: probable mediator of RNA polymera... 188 9e-46
ref|XP_006351014.1| PREDICTED: probable mediator of RNA polymera... 188 1e-45
gb|AAX96488.1| AT5g09850/MYH9_6 [Oryza sativa Japonica Group] gi... 187 2e-45
gb|EEC67739.1| hypothetical protein OsI_35248 [Oryza sativa Indi... 187 2e-45
>ref|XP_002265433.2| PREDICTED: uncharacterized protein LOC100262291 [Vitis vinifera]
gi|296081186|emb|CBI18212.3| unnamed protein product
[Vitis vinifera]
Length = 332
Score = 212 bits (540), Expect = 6e-53
Identities = 115/207 (55%), Positives = 140/207 (67%), Gaps = 3/207 (1%)
Frame = +3
Query: 6 LLQNLADMDITFKTLKETDIGRYVNNHRKHPSNEVRQLVKQLVRKWKDLVDEWAKSNSAN 185
LLQ+LADMDITFK LKETDIGR+VN RKHPSNEVR+LVKQLVRKWKDLVDEW K ++
Sbjct: 126 LLQSLADMDITFKALKETDIGRHVNRLRKHPSNEVRRLVKQLVRKWKDLVDEWVKLSTPG 185
Query: 186 GTASPAIITNGDSPLQIYGRSSQN-GNQMPEFGNSPNPHVGYLSTERNSSEPIEPKAKKP 362
T + AI+ +GDSP Q + +S+ N +Q+P+F SPNPH G +++N+ E +EPK K
Sbjct: 186 ETTASAIVADGDSPQQNHLKSTSNVHHQVPDFAYSPNPHNGSSGSDKNNVE-LEPKRKAV 244
Query: 363 THNPARNNGXXXXXXXXXXXXXXXXXXXDNSPDAERLASARKRLHDNYLEAQNAKKQRTI 542
N D+ D E+LASAR+RLH+NY EAQNAKKQRTI
Sbjct: 245 PRRETPNKPNQTPPIPTSVALNKQREQKDSLVDEEKLASARRRLHENYQEAQNAKKQRTI 304
Query: 543 QVMDIHEIPKPKNSFVRK--GVSHGKH 617
QVMDIH+IPKPKN+F K G KH
Sbjct: 305 QVMDIHDIPKPKNTFFAKNRGGVQAKH 331
>emb|CBI37628.3| unnamed protein product [Vitis vinifera]
Length = 332
Score = 204 bits (519), Expect = 2e-50
Identities = 117/212 (55%), Positives = 140/212 (66%), Gaps = 8/212 (3%)
Frame = +3
Query: 6 LLQNLADMDITFKTLKETDIGRYVNNHRKHPSNEVRQLVKQLVRKWKDLVDEWAKSNSAN 185
LLQ LADMDITFK LKETDIGR+VN RKHPSN+VR+LVK LVRKWKDLVDEW KSN A
Sbjct: 131 LLQTLADMDITFKALKETDIGRHVNRLRKHPSNDVRRLVKHLVRKWKDLVDEWVKSNPAG 190
Query: 186 GTASPAIITNGDSPLQIYGRSSQNGNQMPEFGNSPNPHVGYLSTERNSSEPIEPKAKK-- 359
S A++ GDSP Q R+ +Q+P+FG SPNP G +++N++EP EPK K
Sbjct: 191 EFTSSALMAEGDSPPQKIPRTGH--HQVPDFGYSPNPQNGSSGSDKNNAEP-EPKVKAIP 247
Query: 360 ----PTHNPARNNGXXXXXXXXXXXXXXXXXXXDNSPDAERLASARKRLHDNYLEAQNAK 527
PT PA++ D + D ++ ASARKRLH+NY EAQNAK
Sbjct: 248 RKEVPT-RPAQS-------APVSSSFPPPNKQRDTAIDPDKFASARKRLHENYQEAQNAK 299
Query: 528 KQRTIQVMDIHEIPKPKNSFVRKGV--SHGKH 617
KQRTIQVMDIH+IPKPKN+F K S G+H
Sbjct: 300 KQRTIQVMDIHDIPKPKNTFFAKPKVGSQGRH 331
>gb|EOX92591.1| Transcription elongation factor (TFIIS) family protein, putative
isoform 1 [Theobroma cacao] gi|508700696|gb|EOX92592.1|
Transcription elongation factor (TFIIS) family protein,
putative isoform 1 [Theobroma cacao]
Length = 336
Score = 202 bits (514), Expect = 6e-50
Identities = 110/208 (52%), Positives = 141/208 (67%), Gaps = 4/208 (1%)
Frame = +3
Query: 6 LLQNLADMDITFKTLKETDIGRYVNNHRKHPSNEVRQLVKQLVRKWKDLVDEWAKSNSAN 185
LLQ+LADMDITF+ LKETDIGR+VN RKH SN+VR+LVKQLVRKWK++VDEW + N
Sbjct: 135 LLQSLADMDITFQALKETDIGRHVNILRKHSSNDVRRLVKQLVRKWKEIVDEWVRLNQPG 194
Query: 186 GTASPAIITNGDSPLQIYGRSSQNG-NQMPEFGNSPNPHVGYLSTERNSSEPIEPKAKKP 362
S A++ +GDSP + + QNG +Q+P+F SPNPH G +++N+SEP +KP
Sbjct: 195 ELESSALMADGDSPQR---KPPQNGYHQVPDFAYSPNPHNGSSGSDKNNSEP----ERKP 247
Query: 363 THNPARNNGXXXXXXXXXXXXXXXXXXXDNSPDAERLASARKRLHDNYLEAQNAKKQRTI 542
P RN +++ D+ERLASARKRL +NY EA+NAK+QRTI
Sbjct: 248 KPIPPRNEPPPKPTYSAPVLQNRQREQKESNFDSERLASARKRLQENYKEAENAKRQRTI 307
Query: 543 QVMDIHEIPKPKNSFVRK---GVSHGKH 617
QVMDIHE+PKPKN+F K G S G+H
Sbjct: 308 QVMDIHELPKPKNAFFGKNKGGSSQGRH 335
>ref|XP_002279514.1| PREDICTED: uncharacterized protein LOC100260896 isoform 2 [Vitis
vinifera]
Length = 305
Score = 202 bits (513), Expect = 8e-50
Identities = 112/206 (54%), Positives = 135/206 (65%), Gaps = 2/206 (0%)
Frame = +3
Query: 6 LLQNLADMDITFKTLKETDIGRYVNNHRKHPSNEVRQLVKQLVRKWKDLVDEWAKSNSAN 185
LLQ LADMDITFK LKETDIGR+VN RKHPSN+VR+LVK LVRKWKDLVDEW KSN A
Sbjct: 131 LLQTLADMDITFKALKETDIGRHVNRLRKHPSNDVRRLVKHLVRKWKDLVDEWVKSNPAG 190
Query: 186 GTASPAIITNGDSPLQIYGRSSQNGNQMPEFGNSPNPHVGYLSTERNSSEPIEPKAKKPT 365
S A++ GDSP Q R+ + Q+P+FG SPNP G +++N++EP EPK ++
Sbjct: 191 EFTSSALMAEGDSPPQKIPRTGHH--QVPDFGYSPNPQNGSSGSDKNNAEP-EPKKQR-- 245
Query: 366 HNPARNNGXXXXXXXXXXXXXXXXXXXDNSPDAERLASARKRLHDNYLEAQNAKKQRTIQ 545
D + D ++ ASARKRLH+NY EAQNAKKQRTIQ
Sbjct: 246 ---------------------------DTAIDPDKFASARKRLHENYQEAQNAKKQRTIQ 278
Query: 546 VMDIHEIPKPKNSFVRKGV--SHGKH 617
VMDIH+IPKPKN+F K S G+H
Sbjct: 279 VMDIHDIPKPKNTFFAKPKVGSQGRH 304
>ref|XP_002279496.2| PREDICTED: uncharacterized protein LOC100260896 isoform 1 [Vitis
vinifera]
Length = 331
Score = 199 bits (507), Expect = 4e-49
Identities = 117/212 (55%), Positives = 140/212 (66%), Gaps = 8/212 (3%)
Frame = +3
Query: 6 LLQNLADMDITFKTLKETDIGRYVNNHRKHPSNEVRQLVKQLVRKWKDLVDEWAKSNSAN 185
LLQ LADMDITFK LKETDIGR+VN RKHPSN+VR+LVK LVRKWKDLVDEW KSN A
Sbjct: 131 LLQTLADMDITFKALKETDIGRHVNRLRKHPSNDVRRLVKHLVRKWKDLVDEWVKSNPAG 190
Query: 186 GTASPAIITNGDSPLQIYGRSSQNGNQMPEFGNSPNPHVGYLSTERNSSEPIEPKAKK-- 359
S A++ GDSP Q R+ +Q+P+FG SPNP G +++N++EP EPK K
Sbjct: 191 EFTSSALM-EGDSPPQKIPRTGH--HQVPDFGYSPNPQNGSSGSDKNNAEP-EPKVKAIP 246
Query: 360 ----PTHNPARNNGXXXXXXXXXXXXXXXXXXXDNSPDAERLASARKRLHDNYLEAQNAK 527
PT PA++ D + D ++ ASARKRLH+NY EAQNAK
Sbjct: 247 RKEVPT-RPAQS-------APVSSSFPPPNKQRDTAIDPDKFASARKRLHENYQEAQNAK 298
Query: 528 KQRTIQVMDIHEIPKPKNSFVRKGV--SHGKH 617
KQRTIQVMDIH+IPKPKN+F K S G+H
Sbjct: 299 KQRTIQVMDIHDIPKPKNTFFAKPKVGSQGRH 330
>ref|XP_004141981.1| PREDICTED: probable mediator of RNA polymerase II transcription
subunit 26c-like [Cucumis sativus]
gi|449528150|ref|XP_004171069.1| PREDICTED: probable
mediator of RNA polymerase II transcription subunit
26c-like [Cucumis sativus]
Length = 345
Score = 198 bits (504), Expect = 9e-49
Identities = 111/211 (52%), Positives = 141/211 (66%), Gaps = 7/211 (3%)
Frame = +3
Query: 6 LLQNLADMDITFKTLKETDIGRYVNNHRKHPSNEVRQLVKQLVRKWKDLVDEWAKSNSAN 185
LLQNLADMDITF+ LKETDIGR+VN RKHPSN+VR+LVK LVRKWK++VDEW + N
Sbjct: 139 LLQNLADMDITFQALKETDIGRHVNRLRKHPSNDVRRLVKHLVRKWKEIVDEWVRLNQP- 197
Query: 186 GTASPAIITNGDSPLQIYGRSSQNG-NQMPEFGNSPNPHVGYLSTERNSSEPIEPKAKK- 359
G + ++ +GDSP Q ++ QNG +Q+P+F SPNPH G ++RN+SEP EPK K
Sbjct: 198 GEQTATLLADGDSPQQ---KAPQNGYHQVPDFAYSPNPHNGGSGSDRNNSEP-EPKGKSV 253
Query: 360 PTHNPARNNGXXXXXXXXXXXXXXXXXXXDNSPDAERLASARKRLHDNYLEAQNAKKQRT 539
P + + + D+++LASARKRL +NY EA+NAK+QRT
Sbjct: 254 PRRDALPKPTQQAPTSSLTPQNRQKEQQKEANFDSQKLASARKRLQENYKEAENAKRQRT 313
Query: 540 IQVMDIHEIPKPKNSFVRK-----GVSHGKH 617
IQVMDIHEIPKPKN+F K G S G+H
Sbjct: 314 IQVMDIHEIPKPKNAFFSKNKGSGGGSQGRH 344
>gb|ABA95891.2| transcription elongation factor, putative, expressed [Oryza sativa
Japonica Group]
Length = 229
Score = 198 bits (503), Expect = 1e-48
Identities = 116/219 (52%), Positives = 145/219 (66%), Gaps = 14/219 (6%)
Frame = +3
Query: 3 SLLQNLADMDITFKTLKETDIGRYVNNHRKHPSNEVRQLVKQLVRKWKDLVDEWAKSNSA 182
SLLQ+LADMDIT+K L+ETDIGR+VN RKHPS EVRQLVK LVRKWK++VD+W + +++
Sbjct: 12 SLLQSLADMDITYKALQETDIGRHVNGLRKHPSGEVRQLVKLLVRKWKEIVDDWVRLHNS 71
Query: 183 NGTASPAIITNGDSPLQIYGRSSQNGNQMPEFGNSPNP--HVGYLSTERNSS-----EPI 341
G +++T+GDSP +I GRS QN Q+ +F SP+P H G LS+ER+S+ I
Sbjct: 72 GGDGGSSVLTDGDSPDKIQGRSYQNA-QVSDFKYSPSPQRHNG-LSSERSSNNNGVESMI 129
Query: 342 EPKAKKPT---HNPARNNGXXXXXXXXXXXXXXXXXXXDNSPDAERLASARKRLHDNYLE 512
E + P HN +NN DN D E+L SARKRL +NY E
Sbjct: 130 EKRRTSPAPTYHNNKQNNSIGYSTTSSSAPVRTVREQKDNLMDLEKLDSARKRLQENYQE 189
Query: 513 AQNAKKQRTIQVMDIHEIPKPK--NSFVRKGVS--HGKH 617
AQNAKKQRTIQVMDIH+IPKPK N+F+RKG GKH
Sbjct: 190 AQNAKKQRTIQVMDIHDIPKPKNRNAFIRKGGGGLPGKH 228
>ref|NP_001066244.1| Os12g0165700 [Oryza sativa Japonica Group]
gi|108862239|gb|ABA95889.2| transcription elongation
factor, putative, expressed [Oryza sativa Japonica
Group] gi|113648751|dbj|BAF29263.1| Os12g0165700 [Oryza
sativa Japonica Group] gi|125535897|gb|EAY82385.1|
hypothetical protein OsI_37597 [Oryza sativa Indica
Group]
Length = 340
Score = 198 bits (503), Expect = 1e-48
Identities = 116/219 (52%), Positives = 145/219 (66%), Gaps = 14/219 (6%)
Frame = +3
Query: 3 SLLQNLADMDITFKTLKETDIGRYVNNHRKHPSNEVRQLVKQLVRKWKDLVDEWAKSNSA 182
SLLQ+LADMDIT+K L+ETDIGR+VN RKHPS EVRQLVK LVRKWK++VD+W + +++
Sbjct: 123 SLLQSLADMDITYKALQETDIGRHVNGLRKHPSGEVRQLVKLLVRKWKEIVDDWVRLHNS 182
Query: 183 NGTASPAIITNGDSPLQIYGRSSQNGNQMPEFGNSPNP--HVGYLSTERNSS-----EPI 341
G +++T+GDSP +I GRS QN Q+ +F SP+P H G LS+ER+S+ I
Sbjct: 183 GGDGGSSVLTDGDSPDKIQGRSYQNA-QVSDFKYSPSPQRHNG-LSSERSSNNNGVESMI 240
Query: 342 EPKAKKPT---HNPARNNGXXXXXXXXXXXXXXXXXXXDNSPDAERLASARKRLHDNYLE 512
E + P HN +NN DN D E+L SARKRL +NY E
Sbjct: 241 EKRRTSPAPTYHNNKQNNSIGYSTTSSSAPVRTVREQKDNLMDLEKLDSARKRLQENYQE 300
Query: 513 AQNAKKQRTIQVMDIHEIPKPK--NSFVRKGVS--HGKH 617
AQNAKKQRTIQVMDIH+IPKPK N+F+RKG GKH
Sbjct: 301 AQNAKKQRTIQVMDIHDIPKPKNRNAFIRKGGGGLPGKH 339
>gb|EAZ19760.1| hypothetical protein OsJ_35339 [Oryza sativa Japonica Group]
Length = 241
Score = 198 bits (503), Expect = 1e-48
Identities = 116/219 (52%), Positives = 145/219 (66%), Gaps = 14/219 (6%)
Frame = +3
Query: 3 SLLQNLADMDITFKTLKETDIGRYVNNHRKHPSNEVRQLVKQLVRKWKDLVDEWAKSNSA 182
SLLQ+LADMDIT+K L+ETDIGR+VN RKHPS EVRQLVK LVRKWK++VD+W + +++
Sbjct: 24 SLLQSLADMDITYKALQETDIGRHVNGLRKHPSGEVRQLVKLLVRKWKEIVDDWVRLHNS 83
Query: 183 NGTASPAIITNGDSPLQIYGRSSQNGNQMPEFGNSPNP--HVGYLSTERNSS-----EPI 341
G +++T+GDSP +I GRS QN Q+ +F SP+P H G LS+ER+S+ I
Sbjct: 84 GGDGGSSVLTDGDSPDKIQGRSYQNA-QVSDFKYSPSPQRHNG-LSSERSSNNNGVESMI 141
Query: 342 EPKAKKPT---HNPARNNGXXXXXXXXXXXXXXXXXXXDNSPDAERLASARKRLHDNYLE 512
E + P HN +NN DN D E+L SARKRL +NY E
Sbjct: 142 EKRRTSPAPTYHNNKQNNSIGYSTTSSSAPVRTVREQKDNLMDLEKLDSARKRLQENYQE 201
Query: 513 AQNAKKQRTIQVMDIHEIPKPK--NSFVRKGVS--HGKH 617
AQNAKKQRTIQVMDIH+IPKPK N+F+RKG GKH
Sbjct: 202 AQNAKKQRTIQVMDIHDIPKPKNRNAFIRKGGGGLPGKH 240
>gb|EOY19919.1| Transcription elongation factor (TFIIS) family protein, putative
isoform 1 [Theobroma cacao]
Length = 337
Score = 197 bits (500), Expect = 3e-48
Identities = 111/208 (53%), Positives = 137/208 (65%), Gaps = 4/208 (1%)
Frame = +3
Query: 6 LLQNLADMDITFKTLKETDIGRYVNNHRKHPSNEVRQLVKQLVRKWKDLVDEWAKSNSAN 185
LLQ+LADMDITF+ LKETDIGR+VN RKH SN+VR+LVKQLVRKWK++VDEW + N
Sbjct: 135 LLQSLADMDITFQALKETDIGRHVNKLRKHSSNDVRRLVKQLVRKWKEIVDEWVRVNQP- 193
Query: 186 GTASPAIITNGDSPLQIYGRSSQNG-NQMPEFGNSPNPHVGYLSTERNSSEPIEPKAKKP 362
G A + +GDSP Q + QNG Q+P+F SPNPH G E+N+SEP + KP
Sbjct: 194 GELESAALMDGDSPQQ---KLPQNGRQQVPDFAYSPNPHNGSFGLEKNNSEP--ERKPKP 248
Query: 363 THNPARNNGXXXXXXXXXXXXXXXXXXXDNSPDAERLASARKRLHDNYLEAQNAKKQRTI 542
P ++ +++ D+ERLASARKRL NY EA+NAKKQRTI
Sbjct: 249 IPPPRKDPPPRPTHSTPPQNVQRQREQKESNFDSERLASARKRLQANYKEAENAKKQRTI 308
Query: 543 QVMDIHEIPKPKNSFVRK---GVSHGKH 617
QVMDIHE+PKPKN+F K G S G+H
Sbjct: 309 QVMDIHELPKPKNAFFGKNKGGGSQGRH 336
>ref|XP_002530078.1| conserved hypothetical protein [Ricinus communis]
gi|223530431|gb|EEF32318.1| conserved hypothetical
protein [Ricinus communis]
Length = 362
Score = 196 bits (497), Expect = 6e-48
Identities = 112/213 (52%), Positives = 138/213 (64%), Gaps = 9/213 (4%)
Frame = +3
Query: 6 LLQNLADMDITFKTLKETDIGRYVNNHRKHPSNEVRQLVKQLVRKWKDLVDEWAKSNSAN 185
LLQ+LADMDITFK LKETDIGR+VN RKH SN+VR+LVKQLVRKWKD+VDEW K N
Sbjct: 152 LLQSLADMDITFKALKETDIGRHVNQLRKHTSNDVRRLVKQLVRKWKDIVDEWVKLNPPG 211
Query: 186 GTASPAIITNGDSPLQIYGRSSQNG-NQMPEFGNSPNPHVGYLSTERNSSEP---IEPKA 353
AS ++ +GDSP Q + QNG +Q+P+F SPNPH G +++N+SEP +P
Sbjct: 212 QHASSGLMADGDSPRQ---KFPQNGHHQVPDFAYSPNPHNGSSGSDKNNSEPERRPKPVP 268
Query: 354 KKPTHNPARNNGXXXXXXXXXXXXXXXXXXXDNSPDAERLASARKRLHDNYLEAQNAKKQ 533
+K +N+ D++RLASARKRL NY EA+NAKKQ
Sbjct: 269 RKEAPPRPAQQSVPVSASASHIVQRQREQQRENNFDSDRLASARKRLQANYKEAENAKKQ 328
Query: 534 RTIQVMDIHEIPKP--KNSFVRK---GVSHGKH 617
RTIQVMDIHE+PKP KN+F K G S G+H
Sbjct: 329 RTIQVMDIHELPKPKNKNTFFAKNKGGGSQGRH 361
>ref|XP_003578864.1| PREDICTED: uncharacterized protein LOC100832597 [Brachypodium
distachyon]
Length = 342
Score = 193 bits (491), Expect = 3e-47
Identities = 105/213 (49%), Positives = 140/213 (65%), Gaps = 10/213 (4%)
Frame = +3
Query: 3 SLLQNLADMDITFKTLKETDIGRYVNNHRKHPSNEVRQLVKQLVRKWKDLVDEWAKSNSA 182
SLLQNLADMDIT+K L++TDIGR+VN+ RKHPS EVRQLVK LVRKWK++VD W + +++
Sbjct: 125 SLLQNLADMDITYKALQDTDIGRHVNSLRKHPSGEVRQLVKLLVRKWKEIVDGWVRLHNS 184
Query: 183 NGTASPAIITNGDSPLQIYGRSSQNGNQMPEFGNSPNP--HVGYLSTERNSSEPIEPKAK 356
G +I+T+GDSP + G+S QN Q+ +F SP+P H G S +++ E +
Sbjct: 185 GGDGGSSILTDGDSPEKTQGKSYQNA-QVSDFKYSPSPQRHNGLSSDRSSNNNGFETTME 243
Query: 357 K------PTHNPARNNGXXXXXXXXXXXXXXXXXXXDNSPDAERLASARKRLHDNYLEAQ 518
+ P++N + N DN+ D E+L SARKRLH+NY EAQ
Sbjct: 244 RHRASPAPSYNQTKQNSSNNYSTTSSAPPRTMREQKDNNLDLEKLDSARKRLHENYQEAQ 303
Query: 519 NAKKQRTIQVMDIHEIPKPK--NSFVRKGVSHG 611
NAKKQRT+QV+DIH+IPKPK N+F+RKG G
Sbjct: 304 NAKKQRTMQVLDIHDIPKPKNRNTFIRKGGGGG 336
>ref|XP_006664368.1| PREDICTED: probable mediator of RNA polymerase II transcription
subunit 26c-like [Oryza brachyantha]
Length = 278
Score = 192 bits (489), Expect = 5e-47
Identities = 113/219 (51%), Positives = 144/219 (65%), Gaps = 14/219 (6%)
Frame = +3
Query: 3 SLLQNLADMDITFKTLKETDIGRYVNNHRKHPSNEVRQLVKQLVRKWKDLVDEWAKSNSA 182
SLLQ+LADMDIT+K L+ETDIGR+VN RKHPS EVRQLVK LVRKWK++VD+W + +++
Sbjct: 61 SLLQSLADMDITYKALQETDIGRHVNGLRKHPSGEVRQLVKLLVRKWKEIVDDWVRLHNS 120
Query: 183 NGTASPAIITNGDSPLQIYGRSSQNGNQMPEFGNSPNP--HVGYLSTERNSS-----EPI 341
G +++T+GDSP +I GR+ QN Q+ +F SP+P H G LS+ER+S+ I
Sbjct: 121 GGDGGSSVLTDGDSPDKIQGRNYQNA-QVSDFKYSPSPQRHNG-LSSERSSNNNGIESMI 178
Query: 342 EPKAKKPT---HNPARNNGXXXXXXXXXXXXXXXXXXXDNSPDAERLASARKRLHDNYLE 512
E + P HN +N+ D D E+L SARKRL +NY E
Sbjct: 179 EKRRTSPAPAYHNNKQNSSISYSTSSSSAPVRTMREQKDTLMDLEKLDSARKRLQENYQE 238
Query: 513 AQNAKKQRTIQVMDIHEIPKPK--NSFVRKGVS--HGKH 617
AQNAKKQRTIQVMDIH+IPKPK N+F+RKG GKH
Sbjct: 239 AQNAKKQRTIQVMDIHDIPKPKNRNAFIRKGGGGLPGKH 277
>ref|XP_002329469.1| predicted protein [Populus trichocarpa]
gi|566223086|ref|XP_006370923.1| hypothetical protein
POPTR_0019s01790g [Populus trichocarpa]
gi|550316504|gb|ERP48720.1| hypothetical protein
POPTR_0019s01790g [Populus trichocarpa]
Length = 357
Score = 191 bits (485), Expect = 1e-46
Identities = 107/210 (50%), Positives = 131/210 (62%), Gaps = 4/210 (1%)
Frame = +3
Query: 6 LLQNLADMDITFKTLKETDIGRYVNNHRKHPSNEVRQLVKQLVRKWKDLVDEWAKSNSAN 185
LLQ+LADMDITF+ LKETDIGR+VN RKHPSN+VR+LVKQLVRKWK++VD+W + N
Sbjct: 148 LLQSLADMDITFQALKETDIGRHVNRLRKHPSNDVRRLVKQLVRKWKEIVDDWVRLNPQG 207
Query: 186 GTASPAIITNGDSPLQIYGRSSQNG-NQMPEFGNSPNPHVGYLSTERNSSEPIEPKAKKP 362
AS ++ +GDSP Q + QNG +Q+P+F SPNPH G ++RN+SEP P
Sbjct: 208 EHASSGLMADGDSPQQ---KIPQNGHHQVPDFAYSPNPHNGSSGSDRNNSEPERKPKPAP 264
Query: 363 THNPARNNGXXXXXXXXXXXXXXXXXXXDNSPDAERLASARKRLHDNYLEAQNAKKQRTI 542
N A + +RLASA KRL NY EA+NAKKQRTI
Sbjct: 265 PRNQAPTKPTQKPVPASSPAPYNVQVSTSSFDADQRLASASKRLQANYKEAENAKKQRTI 324
Query: 543 QVMDIHEIPKPKNS---FVRKGVSHGKH*G 623
QVMDIHEIPKPKN F + + G H G
Sbjct: 325 QVMDIHEIPKPKNKNTFFPKNRGAGGSHQG 354
>gb|EXB36907.1| hypothetical protein L484_016512 [Morus notabilis]
Length = 418
Score = 190 bits (482), Expect = 3e-46
Identities = 112/214 (52%), Positives = 140/214 (65%), Gaps = 10/214 (4%)
Frame = +3
Query: 6 LLQNLADMDITFKTLKETDIGRYVNNHRKHPSNEVRQLVKQLVRKWKDLVDEWAKSNSAN 185
LLQ+LADMDITF+ LKETDIGR+VN RKHPS+EV++LVKQ+VRKWKD VDEW K N
Sbjct: 132 LLQSLADMDITFQALKETDIGRHVNRLRKHPSSEVKRLVKQVVRKWKDTVDEWVKLNQPG 191
Query: 186 GTASPAIITNGDSPLQIYGRSSQNG-NQMPEFGNSPNPHVGYLSTERNSSEPIEPKAKKP 362
AS +++ +GDSP Q + QNG +Q+P+F SPNPH G +++N+SEP + P
Sbjct: 192 EHASNSLM-DGDSPQQ---KIPQNGHHQVPDFAYSPNPHNGSSGSDKNNSEPEQKPKAVP 247
Query: 363 THNPA--RNNGXXXXXXXXXXXXXXXXXXXDNSPDAERLASARKRLHDNYLEAQNAKKQR 536
+ A + + S DAE+LASARKRL +NY EA+NAKKQR
Sbjct: 248 SRREALPKPMNPSVPQSAHSTPQNRQREQREGSFDAEKLASARKRLQENYKEAENAKKQR 307
Query: 537 TIQVMDIHEIPKP--KNSFVRK-----GVSHGKH 617
TIQVMDIHEIPKP KN+F K G S G+H
Sbjct: 308 TIQVMDIHEIPKPKAKNAFFPKNKGGGGGSLGRH 341
>ref|XP_006427873.1| hypothetical protein CICLE_v10025964mg [Citrus clementina]
gi|568820070|ref|XP_006464554.1| PREDICTED: probable
mediator of RNA polymerase II transcription subunit
26c-like [Citrus sinensis] gi|557529863|gb|ESR41113.1|
hypothetical protein CICLE_v10025964mg [Citrus
clementina]
Length = 353
Score = 189 bits (479), Expect = 7e-46
Identities = 111/214 (51%), Positives = 137/214 (64%), Gaps = 10/214 (4%)
Frame = +3
Query: 6 LLQNLADMDITFKTLKETDIGRYVNNHRKHPSNEVRQLVKQLVRKWKDLVDEWAKSNSAN 185
LLQ+LADMDITFK LKETDIGR+VN RKH SN+VR+LVK LVRKWKD+VDEW K N
Sbjct: 143 LLQSLADMDITFKALKETDIGRHVNQLRKHSSNDVRKLVKHLVRKWKDIVDEWVKLNQPG 202
Query: 186 GTASPAIITNGDSPLQIYGRSSQNGN-QMPEFGNSPNPHVGYLSTERNSSEPIE-----P 347
AS A++ +GDSP Q + QNGN Q+P+F SPNPH G +++N+SEP P
Sbjct: 203 ELASSAMM-DGDSPQQ---KIPQNGNHQVPDFAYSPNPHNGSSGSDKNNSEPERKSKQAP 258
Query: 348 KAKKPTHNPARNNGXXXXXXXXXXXXXXXXXXXDNSPDAE-RLASARKRLHDNYLEAQNA 524
+K + +++ DA+ RLASARKRL +NY +NA
Sbjct: 259 LPRKEALSSRPPQSASPAAPHSVQRPREQKESRESTFDADSRLASARKRLQENYKREENA 318
Query: 525 KKQRTIQVMDIHEIPKPKNSFVRK---GVSHGKH 617
K+QRTIQVMDIHEIPKPKN+F K G S G+H
Sbjct: 319 KRQRTIQVMDIHEIPKPKNAFFGKNKGGSSQGRH 352
>ref|XP_004249876.1| PREDICTED: probable mediator of RNA polymerase II transcription
subunit 26c-like [Solanum lycopersicum]
Length = 349
Score = 188 bits (478), Expect = 9e-46
Identities = 104/199 (52%), Positives = 126/199 (63%), Gaps = 2/199 (1%)
Frame = +3
Query: 6 LLQNLADMDITFKTLKETDIGRYVNNHRKHPSNEVRQLVKQLVRKWKDLVDEWAKSNSAN 185
LLQNLADMDITF+ L++TDIGR+VN RKHPS+EVR+LVK LVRKWK VD+W + N
Sbjct: 139 LLQNLADMDITFQALQDTDIGRHVNQLRKHPSSEVRRLVKMLVRKWKGTVDDWVRLNPPE 198
Query: 186 GTASPAII-TNGDSPLQIYGRSSQNGN-QMPEFGNSPNPHVGYLSTERNSSEPIEPKAKK 359
S +I + DSP Q R+ QNGN Q+P+F SPNP G S++RN+SE
Sbjct: 199 QHESANLIAADDDSPQQSVRRNQQNGNHQVPDFAYSPNPRNGSSSSDRNNSESEYKPKPV 258
Query: 360 PTHNPARNNGXXXXXXXXXXXXXXXXXXXDNSPDAERLASARKRLHDNYLEAQNAKKQRT 539
P N +++ D ERL SAR+RL +NY EAQNAKKQRT
Sbjct: 259 PQRNVTPTRPLQSAPKPVSAPPPSRPLPRESAIDIERLNSARRRLQENYQEAQNAKKQRT 318
Query: 540 IQVMDIHEIPKPKNSFVRK 596
IQVMDIHEIPKPKN F+ K
Sbjct: 319 IQVMDIHEIPKPKNGFIAK 337
>ref|XP_006351014.1| PREDICTED: probable mediator of RNA polymerase II transcription
subunit 26c-like [Solanum tuberosum]
Length = 348
Score = 188 bits (477), Expect = 1e-45
Identities = 106/208 (50%), Positives = 129/208 (62%), Gaps = 4/208 (1%)
Frame = +3
Query: 6 LLQNLADMDITFKTLKETDIGRYVNNHRKHPSNEVRQLVKQLVRKWKDLVDEWAKSNSAN 185
LLQ LADMDITF+ L++TDIGR+VN RKHPS+EVR+LVK LVRKWK VD+W + N
Sbjct: 139 LLQTLADMDITFQALQDTDIGRHVNQLRKHPSSEVRRLVKMLVRKWKGTVDDWVRLNPPE 198
Query: 186 GTASPAII-TNGDSPLQIYGRSSQNGN-QMPEFGNSPNPHVGYLSTERNSSEPIEPKAKK 359
S +I + DSP Q R+ QNGN Q+P+F SPNP G S++RN+SE
Sbjct: 199 QHESANLIAADDDSPQQSVRRNQQNGNHQVPDFAYSPNPRNGSSSSDRNNSESEYKPKPV 258
Query: 360 PTHNPARNNGXXXXXXXXXXXXXXXXXXXDNSPDAERLASARKRLHDNYLEAQNAKKQRT 539
P N +++ D ERL SAR+RL +NY EAQNAKKQRT
Sbjct: 259 PQRNVTPTRPLQSAPKPASAPPPSRPPPRESAIDIERLNSARRRLQENYQEAQNAKKQRT 318
Query: 540 IQVMDIHEIPKPKNSFV--RKGVSHGKH 617
IQVMDIHEIPKPKN F+ KG G+H
Sbjct: 319 IQVMDIHEIPKPKNGFIAKNKGGFQGRH 346
>gb|AAX96488.1| AT5g09850/MYH9_6 [Oryza sativa Japonica Group]
gi|77548900|gb|ABA91697.1| transcription elongation
factor, putative, expressed [Oryza sativa Japonica
Group]
Length = 339
Score = 187 bits (476), Expect = 2e-45
Identities = 111/213 (52%), Positives = 142/213 (66%), Gaps = 10/213 (4%)
Frame = +3
Query: 3 SLLQNLADMDITFKTLKETDIGRYVNNHRKHPSNEVRQLVKQLVRKWKDLVDEWAKSNSA 182
SLLQ+LADMDIT+K L+ETDIGR+VN RKHPS EVR LVKQL+RKWK++VD+W + +++
Sbjct: 122 SLLQSLADMDITYKALQETDIGRHVNGLRKHPSGEVRLLVKQLIRKWKEIVDDWVRLHNS 181
Query: 183 NGTASPAIITNGDSPLQIYGRSSQNGNQMPEFGNSPNP-HVGYLSTERNSSEPIEPKAKK 359
+G AS +IIT+G+SP +I G++ Q+ +Q+ EF SP+P S+ER S+ A K
Sbjct: 182 SGDASNSIITDGNSPEKIQGKNQQS-SQVSEFKYSPSPSRHNNSSSERVSNGIASIAATK 240
Query: 360 ------PTHNPARN-NGXXXXXXXXXXXXXXXXXXXDNSPDAERLASARKRLHDNYLEAQ 518
P H+ AR N D+ D ERL SARKRL +NY EAQ
Sbjct: 241 HRASPAPAHHNARQINNTHHSTTSSSAPARMVKEQKDSHLDLERLDSARKRLQENYQEAQ 300
Query: 519 NAKKQRTIQVMDIHEIPKPK--NSFVRKGVSHG 611
NAKKQRTIQVMDI+EIPKPK N+F+RKG G
Sbjct: 301 NAKKQRTIQVMDINEIPKPKNRNAFIRKGNGGG 333
>gb|EEC67739.1| hypothetical protein OsI_35248 [Oryza sativa Indica Group]
Length = 338
Score = 187 bits (476), Expect = 2e-45
Identities = 111/213 (52%), Positives = 142/213 (66%), Gaps = 10/213 (4%)
Frame = +3
Query: 3 SLLQNLADMDITFKTLKETDIGRYVNNHRKHPSNEVRQLVKQLVRKWKDLVDEWAKSNSA 182
SLLQ+LADMDIT+K L+ETDIGR+VN RKHPS EVR LVKQL+RKWK++VD+W + +++
Sbjct: 121 SLLQSLADMDITYKALQETDIGRHVNGLRKHPSGEVRLLVKQLIRKWKEIVDDWVRLHNS 180
Query: 183 NGTASPAIITNGDSPLQIYGRSSQNGNQMPEFGNSPNP-HVGYLSTERNSSEPIEPKAKK 359
+G AS +IIT+G+SP +I G++ Q+ +Q+ EF SP+P S+ER S+ A K
Sbjct: 181 SGDASNSIITDGNSPEKIQGKNQQS-SQVSEFKYSPSPSRHNNSSSERVSNGIASIAATK 239
Query: 360 ------PTHNPARN-NGXXXXXXXXXXXXXXXXXXXDNSPDAERLASARKRLHDNYLEAQ 518
P H+ AR N D+ D ERL SARKRL +NY EAQ
Sbjct: 240 HRASPAPAHHNARQINNTHHSTTSSSAPARMVKEQKDSHLDLERLDSARKRLQENYQEAQ 299
Query: 519 NAKKQRTIQVMDIHEIPKPK--NSFVRKGVSHG 611
NAKKQRTIQVMDI+EIPKPK N+F+RKG G
Sbjct: 300 NAKKQRTIQVMDINEIPKPKNRNAFIRKGNGGG 332