BLASTX nr result
ID: Zingiber24_contig00009932
seq
BLASTX 2.2.25 [Feb-01-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= Zingiber24_contig00009932
(3433 letters)
Database: ./nr
37,332,560 sequences; 13,225,080,153 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
ref|XP_002280099.1| PREDICTED: RNA-dependent RNA polymerase 2 [V... 1247 0.0
gb|EAY94464.1| hypothetical protein OsI_16234 [Oryza sativa Indi... 1212 0.0
ref|XP_004978058.1| PREDICTED: probable RNA-dependent RNA polyme... 1209 0.0
ref|NP_001267608.1| RNA-dependent RNA polymerase 2-like [Cucumis... 1207 0.0
sp|Q7XM31.1|RDR2_ORYSJ RecName: Full=Probable RNA-dependent RNA ... 1206 0.0
ref|XP_002446635.1| hypothetical protein SORBIDRAFT_06g019330 [S... 1205 0.0
gb|AAU21243.1| putative RNA-dependent RNA polymerase RdRP2 [Nico... 1204 0.0
ref|XP_006345040.1| PREDICTED: RNA-dependent RNA polymerase 2-li... 1200 0.0
ref|NP_001183867.1| RNA-dependent DNA polymerase [Zea mays] gi|8... 1197 0.0
ref|XP_004236120.1| PREDICTED: RNA-dependent RNA polymerase 2-li... 1192 0.0
gb|EMJ12511.1| hypothetical protein PRUPE_ppa000513mg [Prunus pe... 1189 0.0
gb|EOY20662.1| RNA-dependent RNA polymerase 2 isoform 1 [Theobro... 1188 0.0
ref|XP_004298927.1| PREDICTED: RNA-dependent RNA polymerase 2-li... 1178 0.0
ref|XP_004508850.1| PREDICTED: RNA-dependent RNA polymerase 2-li... 1177 0.0
ref|XP_002321582.1| hypothetical protein POPTR_0015s08500g [Popu... 1176 0.0
gb|EXC16034.1| RNA-dependent RNA polymerase 2 [Morus notabilis] 1174 0.0
ref|XP_006476748.1| PREDICTED: RNA-dependent RNA polymerase 2-li... 1174 0.0
ref|XP_003579930.1| PREDICTED: probable RNA-dependent RNA polyme... 1170 0.0
ref|XP_006836643.1| hypothetical protein AMTR_s00088p00026960 [A... 1162 0.0
gb|ADU04145.1| hypothetical protein [Gossypium hirsutum] 1162 0.0
>ref|XP_002280099.1| PREDICTED: RNA-dependent RNA polymerase 2 [Vitis vinifera]
gi|297733815|emb|CBI15062.3| unnamed protein product
[Vitis vinifera]
Length = 1127
Score = 1247 bits (3226), Expect = 0.0
Identities = 643/1120 (57%), Positives = 812/1120 (72%), Gaps = 18/1120 (1%)
Frame = +3
Query: 18 RATLHVSNIPHTAVAAELFDYFDASVG--SVYACKIATARRNWKSKGFGRVQFDTFAAAE 191
R T+ VSNIP TA+A EL+ + ++ +G ++YA +IAT +NWKS+GFGRVQF+T A
Sbjct: 6 RPTVKVSNIPKTAIAKELWSFLESKLGPNTIYALEIATEHKNWKSRGFGRVQFETLQAKR 65
Query: 192 RARLLDDEGRLPLFQHARLTVSPSHNDIVVRASEGQNRLEAAALHAGVLVGEGHMEIFEA 371
A LL +G L +F+ + L++S + +DI+VR E +N++++ LH G LV + M + E+
Sbjct: 66 AADLLSLQGDL-VFRGSSLSISATFDDIIVRPVEPRNQVDSGVLHVGFLVEDDCMLVLES 124
Query: 372 WEQVRVEIMPERKKLELFVDYGGEKYKLEVLFGDILESSSCCLDGRE--SILLQLQYAPR 545
WE V+ +MPER ++E +VD GE+YKLEV F D+LESS+CCL G + ++LL+L+YAP+
Sbjct: 125 WEGVKTLVMPERNRVEFWVDKDGERYKLEVPFDDVLESSACCLGGGKVNALLLKLKYAPK 184
Query: 546 CFVRIHG---LEKESNDRFRVCREDIQFLWVRTTDFSPNGSIGKSFYYCLQLSDGLSCAE 716
F + G K S DR+ + +ED +FLW+RTTDFS S+G+S +C ++ +G +
Sbjct: 185 IFQKFAGPNIASKFSADRYHISKEDAEFLWLRTTDFSSIKSLGQSTSFCWEIKEGFPALD 244
Query: 717 ILRKLPFSRALGELIXXXXXXXXXXXXXX--FNCLGDCSVPYEILYQINSLVHMQKITFR 890
I P+ + L EL C + YEIL+Q+NSLVH QKI+
Sbjct: 245 IFASFPYYKDLTELTLEQGEGFCSDSGLVPLVKCESGPKLAYEILFQLNSLVHAQKISLA 304
Query: 891 QVTIDLFDILKGLPSDVAIKILMKMHKLVSTCYDPVQFIKDELSRIKRS--STSPFSKSN 1064
V DL +IL LP D AI IL K+HK ST YDP+ FIK + I + + P S S
Sbjct: 305 AVDTDLIEILSNLPVDTAIMILQKLHKRKSTRYDPISFIKAQAHIINMNIKNLPPSSHSR 364
Query: 1065 IAQN-MMSCYRVLVTPSRIYCLGPELEKSNYVVKHFSAHASDFLRVTFVDEDWSKLPSDA 1241
+ N +MSC+RVLVTPS+IYCLGPELE SNYVVKH++A+ASDF+RV+FV+EDWSKLPS+A
Sbjct: 365 LTNNNVMSCHRVLVTPSKIYCLGPELESSNYVVKHYAAYASDFVRVSFVEEDWSKLPSNA 424
Query: 1242 ISAKIDSGVFSEPFRTAIYTRILSILRDGLPICSKKFEFLAFSASQLRSNSVWMFASNDN 1421
+S I F++PFRT IY RILSILR+G+ I +K+F+FLAFSASQLRSNSVWMFASND
Sbjct: 425 LSMSIRKAFFADPFRTEIYHRILSILREGIVIGAKRFQFLAFSASQLRSNSVWMFASNDK 484
Query: 1422 LTAETIRKWMGHFNGIRSVSKCAARMGQLFSSSMQTMNXXXXXXXXXXXXEITTEDGKKY 1601
+ + IR+WMG F IRSVSKCAARMGQLFSSS+QT+ E+T+ DG Y
Sbjct: 485 VRVDDIREWMGCFKKIRSVSKCAARMGQLFSSSVQTLPVPVQDVEVIPDIEVTS-DGFGY 543
Query: 1602 CFSDGIGKISLPFARQIAQKCGLSNTPSAFQIRYGGYKGVIVSDRKSFWKLSLRRSMLKF 1781
CFSDGIGKISL FA+Q+AQKCGL TPSAFQIRYGGYKGVI DR SF KLSLR SMLKF
Sbjct: 544 CFSDGIGKISLSFAKQVAQKCGLHQTPSAFQIRYGGYKGVIAVDRNSFRKLSLRSSMLKF 603
Query: 1782 ESANTMLSVTKWSEYQPCFLNREIVCLLSTLGVKDEIFESMQHDQMQLLDKMLTDTEIAL 1961
ES N ML+VTKWSE PC+LNREIV LLSTLGV+DE FE++ ++QM LLDKMLT+ + AL
Sbjct: 604 ESQNRMLNVTKWSESTPCYLNREIVSLLSTLGVEDENFEALLNEQMHLLDKMLTNRQAAL 663
Query: 1962 RVLDTLSGPDIRTAV-KMLIQGYKPNSEPYLLMMLKAHREYQLLDIRSKCRIFVPKGRVL 2138
VL+++ G D + + KML+QGY+PN EPYL MML+A+RE QL DIR++CRIFVPK RVL
Sbjct: 664 DVLESMGGIDNKNILAKMLLQGYEPNVEPYLSMMLQAYRESQLSDIRTRCRIFVPKARVL 723
Query: 2139 IGCLDETSVLDYGQVYIKVTMTKEELQKENTNFIKNADQITATIVGKVLVTKNPCLHPGD 2318
IGCLDET +L+YGQVY++VTMTK E + N +F + D T+ ++GKV+VTKNPCLHPGD
Sbjct: 724 IGCLDETGILNYGQVYVRVTMTKAEHKCRNQSFFQKVDDTTSVVIGKVIVTKNPCLHPGD 783
Query: 2319 IRVLQAVYDPLIDYLGLVDCLIFPQKGKRPHPNECSGGDLDGDLYFVCWDENLIPPETDA 2498
IRVL AVY+ ++ GLVDC++FPQKG+RPHPNECSGGDLDGD +F+CWDE LIP +T+A
Sbjct: 784 IRVLDAVYEVELEEKGLVDCILFPQKGERPHPNECSGGDLDGDQFFICWDEGLIPSQTEA 843
Query: 2499 PMDYTPTRPRIMDHDVKLEEIQKYFVNYMINDNLGAISTTHLVYADSEPSKARCSKCLEL 2678
PMDYT RPRIMDHDV LEEIQK+FV+YMIND LG IST HLV+AD EP KAR KCLEL
Sbjct: 844 PMDYTSRRPRIMDHDVTLEEIQKFFVDYMINDTLGVISTAHLVHADREPEKARSKKCLEL 903
Query: 2679 ANLHSMAVDFAKTGAPAEMPRALRPKIFPDFMERFEKPMFNSPGVIGKLYRAASSYHEDL 2858
A LHSMAVDFAKTGAPAEMPR L+PK FPDFMER +KPM+ S G +GKLYRA + +
Sbjct: 904 ATLHSMAVDFAKTGAPAEMPRVLKPKEFPDFMERVDKPMYISNGALGKLYRATIASRVNE 963
Query: 2859 NSETITSQWV----YDYDLLVXXXXXXXXXXXXYYSRYAEKLGSLMNYYGAEHEDEILTG 3026
S + S + YD+DL V + YAEK+ +LMN+YGAE EDE+LTG
Sbjct: 964 KSSFVWSGTIPGAAYDHDLEVDGFETFLEIAKLHKEMYAEKMATLMNFYGAESEDEMLTG 1023
Query: 3027 NLRNKSAYLQKDRKRYGEMKDRMLIGVKNLKEEVDGWFKCSCPEKDLFKMASAWYQVTYH 3206
NLRNK YLQ+D +R+ EMKDR+LI VK+L++E W SC KMASAWY VTYH
Sbjct: 1024 NLRNKLMYLQRDNRRFTEMKDRILISVKSLQKEAKEWLYGSCKPHQHQKMASAWYHVTYH 1083
Query: 3207 PDYRPET-RFLSFPWIVSDVLLRIKAARARKS*MSWQVCV 3323
+ +T FLSFPWIV +VLL IK+A +RK+ S C+
Sbjct: 1084 STFSSQTPNFLSFPWIVGEVLLVIKSANSRKAETSKDNCI 1123
>gb|EAY94464.1| hypothetical protein OsI_16234 [Oryza sativa Indica Group]
Length = 1136
Score = 1212 bits (3136), Expect = 0.0
Identities = 635/1111 (57%), Positives = 782/1111 (70%), Gaps = 19/1111 (1%)
Frame = +3
Query: 9 ADVRATLHVSNIPHTAVAAELFDYFDASV---GSVYACKIATARRNWKSKGFGRVQFDTF 179
A A+L VSNIP +AVAAEL +FD++V G +AC+IA A R W S+G G VQF +
Sbjct: 6 AAATASLRVSNIPPSAVAAELLAFFDSAVAGAGGAFACEIAAAHRGWLSRGHGTVQFGSA 65
Query: 180 AAAERARLLDDEGRLPLFQHARLTVSPSHNDIVVRASEGQNRLEAAALHAGVLVGEGHME 359
AAA A L GRLP F A L+VSPS D++ RAS+ R A L G V E E
Sbjct: 66 AAAAAAAGLASSGRLPRFLGALLSVSPSPVDLLPRASDLSLRAAGAGLVVGDRVAERVFE 125
Query: 360 IFEAWEQVRVEIMPERKKLELFVDYGGEKYKLEVLFGDILESSSCCLDGRESILLQLQYA 539
+AW+ VR E++P +++++L++++ ++YKLEVLF D+ + C LDG +ILLQL YA
Sbjct: 126 AADAWDGVRAEVIPGKRRVDLYLEHDPQRYKLEVLFEDMKDCLGCTLDGMGAILLQLNYA 185
Query: 540 PRCFVRIHGLEKES---NDRFRVCREDIQFLWVRTTDFSPNGSIGKSFYYCLQLSDGLSC 710
PR I G S +DRF C+ED +F WVR DF+PN S G+ L+L
Sbjct: 186 PRIHTAISGPAVNSRFMDDRFHACKEDAKFSWVRALDFTPNYSFGRCSTLVLKLGKSALV 245
Query: 711 AEILRKLPFSRALGELIXXXXXXXXXXXXXX--FNCLGDCSVPYEILYQINSLVHMQKIT 884
++IL+ LPFS LGEL +C D SVPYE+L+++NSL+HM KI
Sbjct: 246 SDILKSLPFSGNLGELTMNSMDGVGASSNVVPLVHCPRDYSVPYEVLFRLNSLMHMGKIV 305
Query: 885 FRQVTIDLFDILKGLPSDVAIKILMKMHKLVSTCYDPVQFIKDELSRIKRSSTSPFSKSN 1064
+ V DLF L+ LP DV+ +I KMHKL STCY+P+QFI+ E +KRS S
Sbjct: 306 AKHVNADLFKALQELPVDVSRRIFEKMHKLESTCYEPLQFIQQEAYSMKRSHNVLLSNEG 365
Query: 1065 IAQN---MMSCYRVLVTPSRIYCLGPELEKSNYVVKHFSAHASDFLRVTFVDEDWSKLPS 1235
+ +M CYRV +TPS+I+CLGPE E +NYVVKH SA+ASDF+RVTFVDEDWSKL S
Sbjct: 366 EGEGERKLMKCYRVNITPSKIFCLGPEEEVTNYVVKHHSAYASDFVRVTFVDEDWSKLSS 425
Query: 1236 DAISAKIDSGVFSEPFRTAIYTRILSILRDGLPICSKKFEFLAFSASQLRSNSVWMFASN 1415
+AISA+I+ G FS+PF+T +Y RILSIL+ G I K FEFLAFSASQLR NSVWMFASN
Sbjct: 426 NAISARIEQGFFSKPFKTGLYYRILSILKKGFSIGPKNFEFLAFSASQLRGNSVWMFASN 485
Query: 1416 DNLTAETIRKWMGHFNGIRSVSKCAARMGQLFSSSMQTMNXXXXXXXXXXXXEITTEDGK 1595
+L A IR+WMGHF IRSVSKCAARMGQLFSSS QT EITT DG
Sbjct: 486 ASLNAGGIRRWMGHFENIRSVSKCAARMGQLFSSSRQTFEVLRWDVEVIPDIEITT-DGS 544
Query: 1596 KYCFSDGIGKISLPFARQIAQKCGL--SNTPSAFQIRYGGYKGVIVSDRKSFWKLSLRRS 1769
KY FSDGIGKISL FA+++A GL +N PSAFQIRYGGYKGVI D S LSLR S
Sbjct: 545 KYIFSDGIGKISLRFAKRVAHHVGLDPTNLPSAFQIRYGGYKGVIAIDPMSSIDLSLRPS 604
Query: 1770 MLKFESANTMLSVTKWSEYQPCFLNREIVCLLSTLGVKDEIFESMQHDQMQLLDKMLTDT 1949
M KFES + ML++T WS+ QPC++NREI+ LLSTLG++DEIF +MQ D+M+ ++MLT+
Sbjct: 605 MKKFESESRMLNITSWSKSQPCYVNREIISLLSTLGIRDEIFVAMQQDEMRETEEMLTNK 664
Query: 1950 EIALRVLDTLSGPDIRTAVKMLIQGYKPNSEPYLLMMLKAHREYQLLDIRSKCRIFVPKG 2129
E+AL VL L G + +TAVKML+QGY+P+SEPYL M+LKAH+E +L DIR++C+I VPKG
Sbjct: 665 EVALSVLGKLGGSETKTAVKMLLQGYEPSSEPYLSMILKAHQENRLTDIRTRCKIHVPKG 724
Query: 2130 RVLIGCLDETSVLDYGQVYIKVTMTKEELQKENTNFIKNADQITATIVGKVLVTKNPCLH 2309
RVLIGCLDET VL+YGQVYI++T +E + N ++ N D TAT+VGKV +TKNPCLH
Sbjct: 725 RVLIGCLDETGVLEYGQVYIRITKNSKEQKDSNQSYFYNDDGKTATVVGKVAITKNPCLH 784
Query: 2310 PGDIRVLQAVYDPLIDYLGLVDCLIFPQKGKRPHPNECSGGDLDGDLYFVCWDENLIPPE 2489
PGDIRVL+A+YDP D +G+VDCL+FPQ+G+RPHPNECSGGDLDGDLYF+ WD+ LIP +
Sbjct: 785 PGDIRVLEAIYDP--DLVGMVDCLVFPQRGERPHPNECSGGDLDGDLYFITWDDKLIPEK 842
Query: 2490 TDAPMDYTPTRPRIMDHDVKLEEIQKYFVNYMINDNLGAISTTHLVYADSEPSKARCSKC 2669
D PMDYT TRPRIMDH V LEEIQK+FV+YMIND+LGAIST HL++AD P KAR +C
Sbjct: 843 VDTPMDYTATRPRIMDHVVTLEEIQKHFVDYMINDSLGAISTAHLIHADRSPLKARSPEC 902
Query: 2670 LELANLHSMAVDFAKTGAPAEMPRALRPKIFPDFMERFEKPMFNSPGVIGKLYRAASSYH 2849
L+LA LHSMAVDFAKTGAPAEMPR LRP+ +PDFMER+EKPM+ S GV+GKLYR+A +
Sbjct: 903 LQLATLHSMAVDFAKTGAPAEMPRTLRPREYPDFMERWEKPMYISNGVLGKLYRSAMGHM 962
Query: 2850 ED------LNSETITSQWVYDYDLLVXXXXXXXXXXXXYYSRYAEKLGSLMNYYGAEHED 3011
E L+S + YD DL V YY Y EKL +LMNYY AEHED
Sbjct: 963 EKSGDSGALSSSSAQPSPTYDPDLEVPGSDEFLQAAEEYYELYEEKLTTLMNYYRAEHED 1022
Query: 3012 EILTGNLRNKSAYLQKDRKRYGEMKDRMLIGVKNLKEEVDGWFKCSCPEKDLFKMASAWY 3191
EILTGN+RNK YL++D KRY EMKDR++ V L E GW S E+D +MASAWY
Sbjct: 1023 EILTGNIRNKMLYLKRDNKRYFEMKDRIVAAVDALHREARGWLLSSRKEEDASRMASAWY 1082
Query: 3192 QVTYHPDYRPETRFLSFPWIVSDVLLRIKAA 3284
+VTYHPD R RF SFPWI D LL IKA+
Sbjct: 1083 RVTYHPDRRRGKRFWSFPWIACDNLLAIKAS 1113
>ref|XP_004978058.1| PREDICTED: probable RNA-dependent RNA polymerase 2-like [Setaria
italica]
Length = 1130
Score = 1209 bits (3127), Expect = 0.0
Identities = 631/1103 (57%), Positives = 780/1103 (70%), Gaps = 14/1103 (1%)
Frame = +3
Query: 21 ATLHVSNIPHTAVAAELFDYFDASVGS--VYACKIATARRNWKSKGFGRVQFDTFAAAER 194
AT+ VSNIP +A+AAEL +FD++V + +AC+IA A R W S+G G VQFD+ AAA R
Sbjct: 14 ATVRVSNIPPSAIAAELLAFFDSAVATDAAFACEIAAAHRGWLSRGHGSVQFDSAAAATR 73
Query: 195 ARLLDDEGRLPLFQHARLTVSPSHNDIVVRASEGQNRLEAAALHAGVLVGEGHMEIFEAW 374
A L GRLP F +RL+VSP+H D++ RA + R ++L G V E +E+ AW
Sbjct: 74 AVDLASSGRLPPFLGSRLSVSPAHVDLLPRAPDFALRALGSSLVVGNRVAERELEVAYAW 133
Query: 375 EQVRVEIMPERKKLELFVDYGGEKYKLEVLFGDILESSSCCLDGRESILLQLQYAPRCFV 554
+ VR EI+P +++++L++ + YKLEVLF DI E C DG +ILLQL YAPR
Sbjct: 134 DGVRAEIIPAKRRVDLYLKHDSRSYKLEVLFEDIRECFGCSFDGTGAILLQLTYAPRIHT 193
Query: 555 RIHGLEKES---NDRFRVCREDIQFLWVRTTDFSPNGSIGKSFYYCLQLSDGLSCAEILR 725
I G +S ++ F C+ED +F WVR DF+PN S G+ L+LS G ++IL
Sbjct: 194 AISGSTIKSRFTDEHFHACKEDAKFAWVRALDFTPNSSFGECSTLVLKLSKGAPVSDILE 253
Query: 726 KLPFSRALGELIXXXXXXXXXXXXXX--FNCLGDCSVPYEILYQINSLVHMQKITFRQVT 899
LPFS LGEL +C SVPYEIL+++NSLVHM K+ R V
Sbjct: 254 SLPFSGELGELAISSMDMFGSSSKVVPLVDCPSGFSVPYEILFRLNSLVHMGKLVARHVN 313
Query: 900 IDLFDILKGLPSDVAIKILMKMHKLVSTCYDPVQFIKDELSRIKRSSTSPFSKSNIAQN- 1076
DLF +L+ LP +I K+ KL STCY+P++FI+ E R+K S + SK +
Sbjct: 314 ADLFKVLEDLPIGTLRRIFEKVSKLKSTCYEPLEFIRHEAHRMKISKKTLLSKKGEGEGK 373
Query: 1077 MMSCYRVLVTPSRIYCLGPELEKSNYVVKHFSAHASDFLRVTFVDEDWSKLPSDAISAKI 1256
++ CYR+ +TPS+IYCLGPE E SNYVVK+ S +ASDF RVTFVDEDWSKL +A+SA+I
Sbjct: 374 LLRCYRIHITPSKIYCLGPEEEVSNYVVKYHSQYASDFARVTFVDEDWSKLSPNALSARI 433
Query: 1257 DSGVFSEPFRTAIYTRILSILRDGLPICSKKFEFLAFSASQLRSNSVWMFASNDNLTAET 1436
+ G FS P +T +Y RILSIL++G I KK+EFLAFSASQLR NSVWMFASND+L+AE+
Sbjct: 434 EQGFFSTPLKTDLYHRILSILKEGFCIGPKKYEFLAFSASQLRGNSVWMFASNDSLSAES 493
Query: 1437 IRKWMGHFNGIRSVSKCAARMGQLFSSSMQTMNXXXXXXXXXXXXEITTEDGKKYCFSDG 1616
IR+WMGHFN IRSVSKCAARMGQLFSSS QT E+TT DG KY FSDG
Sbjct: 494 IRRWMGHFNDIRSVSKCAARMGQLFSSSRQTFEVSSYDVEVIPDIEVTT-DGNKYIFSDG 552
Query: 1617 IGKISLPFARQIAQKCGL--SNTPSAFQIRYGGYKGVIVSDRKSFWKLSLRRSMLKFESA 1790
IGKIS FARQIA+ GL +N PSAFQIRYGGYKGVI D SF+ LSLR SM KFES
Sbjct: 553 IGKISSRFARQIAKTIGLDPNNPPSAFQIRYGGYKGVIAVDPTSFYNLSLRPSMKKFESK 612
Query: 1791 NTMLSVTKWSEYQPCFLNREIVCLLSTLGVKDEIFESMQHDQMQLLDKMLTDTEIALRVL 1970
+TML++T WS+ QPC++NREI+ LLSTLG+KDEIF SMQ D M D+MLT+ E+AL VL
Sbjct: 613 STMLNITNWSKSQPCYVNREIISLLSTLGIKDEIFLSMQQDDMHESDEMLTNKEVALSVL 672
Query: 1971 DTLSGPDIRTAVKMLIQGYKPNSEPYLLMMLKAHREYQLLDIRSKCRIFVPKGRVLIGCL 2150
+ G D + A +ML+QGY+P+SEPYLLM+LKAHR +L DIR++C+I V KGRVLIGCL
Sbjct: 673 GKIGGADTKIAAEMLLQGYEPSSEPYLLMILKAHRANRLTDIRTRCKIHVQKGRVLIGCL 732
Query: 2151 DETSVLDYGQVYIKVTMTKEELQKENTNFIKNADQITATIVGKVLVTKNPCLHPGDIRVL 2330
DETS LDYGQVYI++T ++E + F N D TA IVGKV ++KNPCLHPGD+RVL
Sbjct: 733 DETSKLDYGQVYIRITKNRKEQKYSEQPFFCNDDGKTAVIVGKVAISKNPCLHPGDVRVL 792
Query: 2331 QAVYDPLIDYLGLVDCLIFPQKGKRPHPNECSGGDLDGDLYFVCWDENLIPPETDAPMDY 2510
+A+YDP +D GLVDC++FPQ+G RPHPNECSGGDLDGDL+F+ WD+ LIP + DAPMDY
Sbjct: 793 EAIYDPGLDARGLVDCVVFPQRGDRPHPNECSGGDLDGDLFFITWDDKLIPEKVDAPMDY 852
Query: 2511 TPTRPRIMDHDVKLEEIQKYFVNYMINDNLGAISTTHLVYADSEPSKARCSKCLELANLH 2690
T TRPRIMDH V LEEIQK+FV+YMIND LG IST HL++AD P KAR +CL+LA LH
Sbjct: 853 TATRPRIMDHVVTLEEIQKHFVSYMINDALGVISTAHLIHADRNPLKARSPECLQLAALH 912
Query: 2691 SMAVDFAKTGAPAEMPRALRPKIFPDFMERFEKPMFNSPGVIGKLYRAASSYHEDLNSET 2870
SMAVDFAKTGAPAEMPRALRP+ FPDFMER+EKPM+ S GV+GKLYR+A + E N+E
Sbjct: 913 SMAVDFAKTGAPAEMPRALRPREFPDFMERWEKPMYVSNGVLGKLYRSALRHAE--NAEA 970
Query: 2871 ITSQW----VYDYDLLVXXXXXXXXXXXXYYSRYAEKLGSLMNYYGAEHEDEILTGNLRN 3038
+ + YD DL +Y YAEKLG+LM YY AE EDEILTGN+RN
Sbjct: 971 LLPEGPACSEYDPDLECPGFHDFLDAAEEHYEAYAEKLGTLMTYYSAEREDEILTGNIRN 1030
Query: 3039 KSAYLQKDRKRYGEMKDRMLIGVKNLKEEVDGWFKCSCPEKDLFKMASAWYQVTYHPDYR 3218
K YL++D KRY EMKDR++ V L EEV GW + E+D K+ASAWY VTYHP R
Sbjct: 1031 KLVYLRRDNKRYFEMKDRIIAAVDALHEEVRGWLRAR-REEDASKLASAWYHVTYHPCRR 1089
Query: 3219 PETRFLSFPWIVSDVLLRIKAAR 3287
E RF SFPW+ D LL +KAAR
Sbjct: 1090 GEKRFWSFPWLACDTLLAVKAAR 1112
>ref|NP_001267608.1| RNA-dependent RNA polymerase 2-like [Cucumis sativus]
gi|316989905|gb|ADU77018.1| RNA-dependent RNA polymerase
2 [Cucumis sativus]
Length = 1117
Score = 1207 bits (3122), Expect = 0.0
Identities = 619/1111 (55%), Positives = 791/1111 (71%), Gaps = 18/1111 (1%)
Frame = +3
Query: 18 RATLHVSNIPHTAVAAELFDYFDASVG--SVYACKIATARRNWKSKGFGRVQFDTFAAAE 191
R+TL VSN+P +A+A +L ++ ++ +G SV+A +I T R+NWKS+G GRVQF T A
Sbjct: 6 RSTLRVSNVPESAIAQDLLNFLNSKLGPDSVFAIEIFTERKNWKSRGSGRVQFTTLEAKA 65
Query: 192 RARLLDDEGRLPLFQHARLTVSPSHNDIVVRASEGQNRLEAAALHAGVLVGEGHMEIFEA 371
+A L + L +F L S ++DIVVR NR E LH G ++ E M + E+
Sbjct: 66 KAMSLSVQNSL-VFGTQNLRFSLINDDIVVRPVHATNRTENGVLHVGFMLKEERMSVLES 124
Query: 372 WEQVRVEIMPERKKLELFVDYGGEKYKLEVLFGDILESSSCCLDGRE--SILLQLQYAPR 545
WE V+ IMPER+++E ++ + E YKLEV+F +ILE++ CL + ++LL+L+YAPR
Sbjct: 125 WEGVKAWIMPERRRIEFWIWHEQECYKLEVMFEEILETTGHCLGEEKLNALLLKLKYAPR 184
Query: 546 CFVRIHG---LEKESNDRFRVCREDIQFLWVRTTDFSPNGSIGKSFYYCLQLSDGLSCAE 716
+ +I G + S+ R+R+C ED +LWVRTT+FSP S+G+S +C ++ + L ++
Sbjct: 185 IYKKISGSNMASRFSSTRYRLCIEDYDYLWVRTTEFSPMRSVGQSTSFCWEVEEDLQASD 244
Query: 717 ILRKLPFSRALGELIXXXXXXXXXXXXXXFNCLGD---CSVPYEILYQINSLVHMQKITF 887
I PF + + I + ++ YE+ YQ+NSLVHMQKI+
Sbjct: 245 IFSCFPFYKETQKDIVLEDGEEFCSTSEIVPLIKSGLGSNLAYEVEYQLNSLVHMQKISL 304
Query: 888 RQVTIDLFDILKGLPSDVAIKILMKMHKLVSTCYDPVQFIKDELSRIKRSSTS--PFSKS 1061
DL D L L D A+ +L ++H+L CYDP+ F+K +L KR+ S P S+
Sbjct: 305 SAANQDLIDFLCTLDIDTALNVLQRLHQLKFVCYDPLSFLKTQLHVYKRNCKSLPPSSQK 364
Query: 1062 NIAQNMMSCYRVLVTPSRIYCLGPELEKSNYVVKHFSAHASDFLRVTFVDEDWSKLPSDA 1241
++ N+M+CYRVLVTPSRIYCLGPELE SNYVVK+FS++ASDF+RVTFV+EDWSKLP+ A
Sbjct: 365 RLSNNVMNCYRVLVTPSRIYCLGPELETSNYVVKNFSSYASDFMRVTFVEEDWSKLPAGA 424
Query: 1242 ISAKIDSGVFSEPFRTAIYTRILSILRDGLPICSKKFEFLAFSASQLRSNSVWMFASNDN 1421
++ I G+ S+P+RT IY RI+++LRDG+ I +K+FEFLAFSASQLRSNSVWMFAS+DN
Sbjct: 425 VTTSIQRGILSKPYRTEIYHRIMTVLRDGIVIGAKRFEFLAFSASQLRSNSVWMFASSDN 484
Query: 1422 LTAETIRKWMGHFNGIRSVSKCAARMGQLFSSSMQTMNXXXXXXXXXXXXEITTEDGKKY 1601
L AE IR+WMG F IRS+SKCAARMGQLFSSS QT+ E+ T DG Y
Sbjct: 485 LKAEEIRQWMGCFEKIRSISKCAARMGQLFSSSTQTLVVPTRDVEIIPDIEVNT-DGIDY 543
Query: 1602 CFSDGIGKISLPFARQIAQKCGLSNTPSAFQIRYGGYKGVIVSDRKSFWKLSLRRSMLKF 1781
CFSDGIGKISL FARQ+A KCG+++ PSAFQIRYGGYKGVI DR SF KLSLR SMLKF
Sbjct: 544 CFSDGIGKISLSFARQVADKCGVNHIPSAFQIRYGGYKGVIAVDRNSFRKLSLRDSMLKF 603
Query: 1782 ESANTMLSVTKWSEYQPCFLNREIVCLLSTLGVKDEIFESMQHDQMQLLDKMLTDTEIAL 1961
ES N ML+VTK + PC+LNREI LLSTLGVKDE FE++Q +Q+ LL +MLTD ++AL
Sbjct: 604 ESKNKMLNVTKCCDSMPCYLNREIATLLSTLGVKDESFEALQQEQLHLLKRMLTDKDVAL 663
Query: 1962 RVLDTLSGPDIRTA-VKMLIQGYKPNSEPYLLMMLKAHREYQLLDIRSKCRIFVPKGRVL 2138
VL+ G D V+ML GY+PN EPYL MML+AH D+RS+CRIFVPKGR+L
Sbjct: 664 NVLENFHGADSNNILVQMLNHGYEPNIEPYLSMMLQAHYWNLFSDLRSRCRIFVPKGRIL 723
Query: 2139 IGCLDETSVLDYGQVYIKVTMTKEELQKENTNFIKNADQITATIVGKVLVTKNPCLHPGD 2318
+GCLDET +L+YGQVY +T+TK ELQ N N+ D+ + ++GKV+VTKNPCLHPGD
Sbjct: 724 LGCLDETGILNYGQVYACITLTKSELQSRNQNYFHTIDETKSILLGKVVVTKNPCLHPGD 783
Query: 2319 IRVLQAVYDPLIDYLGLVDCLIFPQKGKRPHPNECSGGDLDGDLYFVCWDENLIPPETDA 2498
+RVL+A++ ++ GLVDCLIFPQKG RPH NECSGGDLDGDLYF+ WDENLIPP+T+A
Sbjct: 784 VRVLEAIFHVELEEKGLVDCLIFPQKGARPHTNECSGGDLDGDLYFISWDENLIPPKTEA 843
Query: 2499 PMDYTPTRPRIMDHDVKLEEIQKYFVNYMINDNLGAISTTHLVYADSEPSKARCSKCLEL 2678
PMDYT RPRIMDHDVKLEEIQK+FV+YMIND LGAIST HLV+AD EP KA +KCLEL
Sbjct: 844 PMDYTGRRPRIMDHDVKLEEIQKFFVDYMINDTLGAISTAHLVHADREPKKALSAKCLEL 903
Query: 2679 ANLHSMAVDFAKTGAPAEMPRALRPKIFPDFMERFEKPMFNSPGVIGKLYRAASSYHEDL 2858
A LHSMAVDFAKTGAPAEMPR L+P+ FPDFMERF+KPM+ S V+GKLYRAA E
Sbjct: 904 AALHSMAVDFAKTGAPAEMPRVLKPREFPDFMERFDKPMYISSNVLGKLYRAAVKSIEQE 963
Query: 2859 NSETITSQ----WVYDYDLLVXXXXXXXXXXXXYYSRYAEKLGSLMNYYGAEHEDEILTG 3026
S + S+ +YDYDL V Y Y EK+ LMNYYGAE+EDEIL G
Sbjct: 964 RSRLVWSEEAARAIYDYDLEVDGFEAFLEIAETYKEMYIEKMSILMNYYGAEYEDEILMG 1023
Query: 3027 NLRNKSAYLQKDRKRYGEMKDRMLIGVKNLKEEVDGWFKCSCPEKDLFKMASAWYQVTYH 3206
+LR++++YLQ+D ++YG+MKDR+L+ VKNL++EV WF+ SC + MASAWY VTYH
Sbjct: 1024 DLRSRASYLQRDNRKYGDMKDRILLSVKNLRKEVKEWFENSCDPLNRRMMASAWYHVTYH 1083
Query: 3207 PDYRPETRF-LSFPWIVSDVLLRIKAARARK 3296
P Y E F SFPW VSDVLL IKA +++
Sbjct: 1084 PSYFKEDMFYFSFPWAVSDVLLNIKAMNSKR 1114
>sp|Q7XM31.1|RDR2_ORYSJ RecName: Full=Probable RNA-dependent RNA polymerase 2; Short=OsRDR2
gi|32492169|emb|CAE04828.1| OSJNBb0048E02.13 [Oryza
sativa Japonica Group]
Length = 1136
Score = 1206 bits (3120), Expect = 0.0
Identities = 633/1111 (56%), Positives = 779/1111 (70%), Gaps = 19/1111 (1%)
Frame = +3
Query: 9 ADVRATLHVSNIPHTAVAAELFDYFDASV---GSVYACKIATARRNWKSKGFGRVQFDTF 179
A A+L VSNIP +AVAAEL +FD++V G +AC+IA A R W S+G G VQF +
Sbjct: 6 AAATASLRVSNIPPSAVAAELLAFFDSAVAVAGGAFACEIAAAHRGWLSRGHGTVQFGSA 65
Query: 180 AAAERARLLDDEGRLPLFQHARLTVSPSHNDIVVRASEGQNRLEAAALHAGVLVGEGHME 359
AAA A L GRLP F A L+VSPS D++ RAS+ R A L G V E E
Sbjct: 66 AAAAAAAGLASSGRLPRFLGALLSVSPSPVDLLPRASDLSLRAAGAGLVVGDRVAERVFE 125
Query: 360 IFEAWEQVRVEIMPERKKLELFVDYGGEKYKLEVLFGDILESSSCCLDGRESILLQLQYA 539
+AW+ VR E++P +++++L++++ ++YKLEVLF D+ + C LDG +ILLQL YA
Sbjct: 126 AADAWDGVRAEVIPGKRRVDLYLEHDSQRYKLEVLFEDMKDCLGCTLDGMGAILLQLNYA 185
Query: 540 PRCFVRIHGLEKES---NDRFRVCREDIQFLWVRTTDFSPNGSIGKSFYYCLQLSDGLSC 710
PR I G S +DRF C+ED +F WVR DF+PN S G+ L+L
Sbjct: 186 PRIHTAISGPAVNSRFMDDRFHACKEDAKFSWVRALDFTPNYSFGRCSTLVLKLGKSALV 245
Query: 711 AEILRKLPFSRALGELIXXXXXXXXXXXXXX--FNCLGDCSVPYEILYQINSLVHMQKIT 884
++IL+ LPFS LGEL +C D SVPYE+L+++NSL+HM KI
Sbjct: 246 SDILKSLPFSGNLGELTMNSMDGVGASSNVVPLVHCPRDYSVPYEVLFRLNSLMHMGKIV 305
Query: 885 FRQVTIDLFDILKGLPSDVAIKILMKMHKLVSTCYDPVQFIKDELSRIKRSSTSPFSKSN 1064
+ V DLF L+ LP DV+ +I KMHKL STCY P+QFI+ E +KRS S
Sbjct: 306 AKHVNADLFKALQELPVDVSRRIFEKMHKLESTCYGPLQFIQQEAYSMKRSHNVLLSNEG 365
Query: 1065 IAQN---MMSCYRVLVTPSRIYCLGPELEKSNYVVKHFSAHASDFLRVTFVDEDWSKLPS 1235
+ +M CYRV +TPS+I+C GPE E +NYVVKH SA+ASDF+RVTFVDEDWSKL S
Sbjct: 366 EGEGERKLMKCYRVNITPSKIFCFGPEEEVTNYVVKHHSAYASDFVRVTFVDEDWSKLSS 425
Query: 1236 DAISAKIDSGVFSEPFRTAIYTRILSILRDGLPICSKKFEFLAFSASQLRSNSVWMFASN 1415
+AISA+I+ G FS+PF+T +Y RILSIL+ G I K FEFLAFSASQLR NSVWMFASN
Sbjct: 426 NAISARIEQGFFSKPFKTGLYYRILSILKKGFSIGPKNFEFLAFSASQLRGNSVWMFASN 485
Query: 1416 DNLTAETIRKWMGHFNGIRSVSKCAARMGQLFSSSMQTMNXXXXXXXXXXXXEITTEDGK 1595
+L A IR+WMGHF IRSVSKCAARMGQLFSSS QT EITT DG
Sbjct: 486 ASLNAGGIRRWMGHFENIRSVSKCAARMGQLFSSSRQTFEVLRWDVEVIPDIEITT-DGS 544
Query: 1596 KYCFSDGIGKISLPFARQIAQKCGL--SNTPSAFQIRYGGYKGVIVSDRKSFWKLSLRRS 1769
KY FSDGIGKISL FA+++A GL +N PSAFQIRYGGYKGVI D S LSLR S
Sbjct: 545 KYIFSDGIGKISLRFAKRVAHHVGLDPTNLPSAFQIRYGGYKGVIAIDPMSSIDLSLRPS 604
Query: 1770 MLKFESANTMLSVTKWSEYQPCFLNREIVCLLSTLGVKDEIFESMQHDQMQLLDKMLTDT 1949
M KFES + ML++T WS+ QPC++NREI+ LLSTLG++DEIF +MQ D+M+ ++MLT+
Sbjct: 605 MKKFESESRMLNITSWSKSQPCYVNREIISLLSTLGIRDEIFVAMQQDEMRETEEMLTNK 664
Query: 1950 EIALRVLDTLSGPDIRTAVKMLIQGYKPNSEPYLLMMLKAHREYQLLDIRSKCRIFVPKG 2129
E+AL VL L G + +TAVKML+QGY+P+SEPYL M+LKAH+E +L DIR++C+I VPKG
Sbjct: 665 EVALSVLGKLGGSETKTAVKMLLQGYEPSSEPYLSMILKAHQENRLTDIRTRCKIHVPKG 724
Query: 2130 RVLIGCLDETSVLDYGQVYIKVTMTKEELQKENTNFIKNADQITATIVGKVLVTKNPCLH 2309
RVLIGCLDET VL+YGQVYI++T +E + N ++ N D TAT+VGKV +TKNPCLH
Sbjct: 725 RVLIGCLDETGVLEYGQVYIRITKNSKEQKDSNQSYFYNDDGKTATVVGKVAITKNPCLH 784
Query: 2310 PGDIRVLQAVYDPLIDYLGLVDCLIFPQKGKRPHPNECSGGDLDGDLYFVCWDENLIPPE 2489
PGDIRVL+A+YDP D +G+VDCL+FPQ+G+RPHPNECSGGDLDGDLYF+ WD+ LIP +
Sbjct: 785 PGDIRVLEAIYDP--DLVGMVDCLVFPQRGERPHPNECSGGDLDGDLYFITWDDKLIPEK 842
Query: 2490 TDAPMDYTPTRPRIMDHDVKLEEIQKYFVNYMINDNLGAISTTHLVYADSEPSKARCSKC 2669
D PMDYT TRPRIMDH V LEEIQK+FV+YMIND+LGAIST HL++AD P KAR +C
Sbjct: 843 VDTPMDYTATRPRIMDHVVTLEEIQKHFVDYMINDSLGAISTAHLIHADRSPLKARSPEC 902
Query: 2670 LELANLHSMAVDFAKTGAPAEMPRALRPKIFPDFMERFEKPMFNSPGVIGKLYRAASSYH 2849
L+LA LHSMAVDFAKTGAPAEMPR LRP+ +PDFMER+EKPM+ S GV+GKLYR+A +
Sbjct: 903 LQLATLHSMAVDFAKTGAPAEMPRTLRPREYPDFMERWEKPMYISNGVLGKLYRSAMGHM 962
Query: 2850 ED------LNSETITSQWVYDYDLLVXXXXXXXXXXXXYYSRYAEKLGSLMNYYGAEHED 3011
E L+S + YD DL V YY Y EKL +LMNYY AE ED
Sbjct: 963 EKSGDSGALSSSSAQPSPTYDPDLEVPGSDEFLQAAEEYYELYEEKLTTLMNYYRAELED 1022
Query: 3012 EILTGNLRNKSAYLQKDRKRYGEMKDRMLIGVKNLKEEVDGWFKCSCPEKDLFKMASAWY 3191
EILTGN+RNK YL++D KRY EMKDR++ V L E GW S E+D +MASAWY
Sbjct: 1023 EILTGNIRNKMLYLKRDNKRYFEMKDRIVAAVDALHREARGWLLSSRKEEDASRMASAWY 1082
Query: 3192 QVTYHPDYRPETRFLSFPWIVSDVLLRIKAA 3284
+VTYHPD R RF SFPWI D LL IKA+
Sbjct: 1083 RVTYHPDRRRGKRFWSFPWIACDNLLAIKAS 1113
>ref|XP_002446635.1| hypothetical protein SORBIDRAFT_06g019330 [Sorghum bicolor]
gi|241937818|gb|EES10963.1| hypothetical protein
SORBIDRAFT_06g019330 [Sorghum bicolor]
Length = 1128
Score = 1205 bits (3117), Expect = 0.0
Identities = 629/1103 (57%), Positives = 773/1103 (70%), Gaps = 14/1103 (1%)
Frame = +3
Query: 21 ATLHVSNIPHTAVAAELFDYFDASV---GSVYACKIATARRNWKSKGFGRVQFDTFAAAE 191
AT+ V+NIP +A+AAEL +FD++V G+ +AC+IA A R W S+G G VQFD+ AAA
Sbjct: 12 ATVRVANIPASAIAAELLAFFDSAVTTTGAAFACEIAAAHRGWLSRGHGSVQFDSSAAAI 71
Query: 192 RARLLDDEGRLPLFQHARLTVSPSHNDIVVRASEGQNRLEAAALHAGVLVGEGHMEIFEA 371
A L GRLP F + L+VSP+H D++ RA + R A L G V E +E +
Sbjct: 72 HAIDLASSGRLPPFLGSCLSVSPAHADLLPRAPDLSLRAADAGLILGNRVAERELEAAYS 131
Query: 372 WEQVRVEIMPERKKLELFVDYGGEKYKLEVLFGDILESSSCCLDGRESILLQLQYAPRCF 551
W+ VR E++P +++++L++ YKLEVLF DI E C LDG +ILLQL YAPR +
Sbjct: 132 WDGVRAEVIPRKRRVDLYLKQDSRSYKLEVLFEDIRECFGCHLDGTGAILLQLTYAPRIY 191
Query: 552 VRIHGLEKES---NDRFRVCREDIQFLWVRTTDFSPNGSIGKSFYYCLQLSDGLSCAEIL 722
I G +S +DRF C+ED +F WVR DF+PN S G+ L+LS G+ ++IL
Sbjct: 192 TAISGSTVKSRFTDDRFHACKEDAKFAWVRALDFTPNNSFGECSTLVLKLSKGVPVSDIL 251
Query: 723 RKLPFSRALGELIXXXXXXXXXXXXXX--FNCLGDCSVPYEILYQINSLVHMQKITFRQV 896
LPFS L EL +C SVPYE+L+++NSLVHM K+ R V
Sbjct: 252 ESLPFSGELEELAISSMLAFGSSSNVVPLVDCPNGFSVPYEVLFRLNSLVHMGKLVARHV 311
Query: 897 TIDLFDILKGLPSDVAIKILMKMHKLVSTCYDPVQFIKDELSRIKRSSTSPFSKSNIAQN 1076
DLF +L+ L D +I KM KL STCY+P+QFI+ E + +S + S
Sbjct: 312 NADLFKVLEELSIDTLRRIFEKMSKLKSTCYEPLQFIRHEAHSMSKSKKAFLSNKKDGGK 371
Query: 1077 MMSCYRVLVTPSRIYCLGPELEKSNYVVKHFSAHASDFLRVTFVDEDWSKLPSDAISAKI 1256
+M CYR+ +TPS+IYCLGPE E SNYVVK+ S +ASDF RVTFVDEDWSKL +A+SA+
Sbjct: 372 LMRCYRIHITPSKIYCLGPEEEVSNYVVKYHSEYASDFARVTFVDEDWSKLSPNALSART 431
Query: 1257 DSGVFSEPFRTAIYTRILSILRDGLPICSKKFEFLAFSASQLRSNSVWMFASNDNLTAET 1436
+ G FS P +T +Y RILSIL++G I KK+EFLAFSASQLR NSVWMFASN++LTAE+
Sbjct: 432 EQGFFSTPLKTGLYHRILSILKEGFCIGPKKYEFLAFSASQLRGNSVWMFASNNSLTAES 491
Query: 1437 IRKWMGHFNGIRSVSKCAARMGQLFSSSMQTMNXXXXXXXXXXXXEITTEDGKKYCFSDG 1616
IR+WMGHF IRSVSKCAARMGQLFSSS QT E+T+ DG KY FSDG
Sbjct: 492 IRRWMGHFEDIRSVSKCAARMGQLFSSSRQTFEISSYDVEVIPDIEVTS-DGTKYIFSDG 550
Query: 1617 IGKISLPFARQIAQKCGL--SNTPSAFQIRYGGYKGVIVSDRKSFWKLSLRRSMLKFESA 1790
IGKIS FARQIA+ GL ++ PSAFQIRYGGYKGVI D SF+ LSLR SM KFES
Sbjct: 551 IGKISTRFARQIAKLFGLDPAHPPSAFQIRYGGYKGVITIDPTSFFNLSLRPSMKKFESK 610
Query: 1791 NTMLSVTKWSEYQPCFLNREIVCLLSTLGVKDEIFESMQHDQMQLLDKMLTDTEIALRVL 1970
+TML++T WS+ QPC++NREI+ LLSTLG+KDE+FESMQ D M D MLT+ E AL VL
Sbjct: 611 STMLNITNWSKSQPCYVNREIISLLSTLGIKDEVFESMQQDDMHESDGMLTNKEAALSVL 670
Query: 1971 DTLSGPDIRTAVKMLIQGYKPNSEPYLLMMLKAHREYQLLDIRSKCRIFVPKGRVLIGCL 2150
+ G D +TA +M++QGY+P+SEPYLLM+LKAHR +L DIR++C+I V KGRVLIGCL
Sbjct: 671 GKIGGADTKTASEMVLQGYEPSSEPYLLMILKAHRANRLTDIRTRCKIHVQKGRVLIGCL 730
Query: 2151 DETSVLDYGQVYIKVTMTKEELQKENTNFIKNADQITATIVGKVLVTKNPCLHPGDIRVL 2330
DET LDYGQVYI++T ++E + F N D TA IVGKV VTKNPCLHPGD+RVL
Sbjct: 731 DETCTLDYGQVYIRITKNRKEQKYSEQPFFCNDDGKTAVIVGKVAVTKNPCLHPGDVRVL 790
Query: 2331 QAVYDPLIDYLGLVDCLIFPQKGKRPHPNECSGGDLDGDLYFVCWDENLIPPETDAPMDY 2510
+AVYDP +D GL+DC++FPQ+G+RPHPNECSGGDLDGDL+F+ WD+ LIP + DAPMDY
Sbjct: 791 EAVYDPALDARGLIDCVVFPQRGERPHPNECSGGDLDGDLFFITWDDKLIPEKVDAPMDY 850
Query: 2511 TPTRPRIMDHDVKLEEIQKYFVNYMINDNLGAISTTHLVYADSEPSKARCSKCLELANLH 2690
T TRPRIMDH V LEEIQK+FVNYMIND LG IST HL++AD P KAR +CL+LA LH
Sbjct: 851 TATRPRIMDHAVTLEEIQKHFVNYMINDALGVISTAHLIHADRNPLKARSPECLQLAALH 910
Query: 2691 SMAVDFAKTGAPAEMPRALRPKIFPDFMERFEKPMFNSPGVIGKLYRAASSYHEDLNSET 2870
SMAVDFAKTGAPAEMP ALRP+ FPDFMER+E+PM+ S V+GKLYRAA + E N+E
Sbjct: 911 SMAVDFAKTGAPAEMPVALRPREFPDFMERWERPMYVSTSVLGKLYRAALRHEE--NAEA 968
Query: 2871 I----TSQWVYDYDLLVXXXXXXXXXXXXYYSRYAEKLGSLMNYYGAEHEDEILTGNLRN 3038
+ + VYD DL V Y YAEKLG+LM YY AEHEDEILTGN+RN
Sbjct: 969 LLPAGPPRCVYDPDLEVAGFDKFLDTAEEQYEVYAEKLGTLMTYYSAEHEDEILTGNIRN 1028
Query: 3039 KSAYLQKDRKRYGEMKDRMLIGVKNLKEEVDGWFKCSCPEKDLFKMASAWYQVTYHPDYR 3218
K YL++D KRY EMKDR++ V L EV GW + E D K+ASAWY VTYHPD R
Sbjct: 1029 KLVYLRRDNKRYFEMKDRIIAAVDALHAEVRGWLRAR-KEDDASKLASAWYHVTYHPDRR 1087
Query: 3219 PETRFLSFPWIVSDVLLRIKAAR 3287
E RF SFPW+ D LL IKAAR
Sbjct: 1088 GEKRFWSFPWVACDTLLAIKAAR 1110
>gb|AAU21243.1| putative RNA-dependent RNA polymerase RdRP2 [Nicotiana benthamiana]
Length = 1120
Score = 1204 bits (3116), Expect = 0.0
Identities = 622/1113 (55%), Positives = 796/1113 (71%), Gaps = 19/1113 (1%)
Frame = +3
Query: 15 VRATLHVSNIPHTAVAAELFDYFDASVG--SVYACKIATARRNWKSKGFGRVQFDTFAAA 188
V AT+ VSNIP TA+A +LFD+F++S+G SV+AC I + +NWKS+G GRVQF+T +
Sbjct: 7 VTATVRVSNIPQTAIAKQLFDFFESSIGKGSVFACDIFSEHKNWKSRGHGRVQFETSQSK 66
Query: 189 ERARLLDDEGRLPLFQHARLTVSPSHNDIVVRASEGQNRLEAAALHAGVLVGEGHMEIFE 368
++ L ++G+L +F+ +L ++ S +DI+ R E R + LH G+L+ +ME+ E
Sbjct: 67 LQSLSLSEQGKL-VFKGHQLILTSSFDDIIARPIELNYRFQKGILHTGILLENDYMEVLE 125
Query: 369 AWEQVRVEIMPERKKLELFVDYG-GEKYKLEVLFGDILESSSCCL-DGRESILLQLQYAP 542
WE V+ IMPERK LE +V + GE Y+LEV FGDI+E+ C L D + ++LL+L++AP
Sbjct: 126 TWENVKTLIMPERKSLEFWVSHAKGECYRLEVQFGDIIETCECSLEDEKTALLLKLKHAP 185
Query: 543 RCFVRIHG---LEKESNDRFRVCREDIQFLWVRTTDFSPNGSIGKSFYYCLQLSDGLSCA 713
+ + R+ G K S+DR+ VC ED +FLWVRTTDFS SIG S C ++ DGL +
Sbjct: 186 KLYQRVSGPGVASKFSSDRYHVCEEDCEFLWVRTTDFSAMKSIGCSSSPCWEIEDGLLSS 245
Query: 714 EILRKLPF-SRALGELIXXXXXXXXXXXXXX--FNCLGDCSVPYEILYQINSLVHMQKIT 884
++L LP+ + + +L+ + D +PYEIL+Q+NSL+H KI+
Sbjct: 246 DLLSGLPYCNNDVMDLVLDEVGDIYSASELVPLASFPSDLKLPYEILFQLNSLIHTHKIS 305
Query: 885 FRQVTIDLFDILKGLPSDVAIKILMKMHKLVSTCYDPVQFIKDELSRIKRSSTSPFSKSN 1064
V DL ++L L D A+ IL KMHKL STC++PV FIK L + ++S + S S
Sbjct: 306 LGAVKTDLIEVLSKLELDTAMMILQKMHKLQSTCFEPVPFIKTRLHVLGKNSKNQPSSSY 365
Query: 1065 ---IAQNMMSCYRVLVTPSRIYCLGPELEKSNYVVKHFSAHASDFLRVTFVDEDWSKLPS 1235
+ QNMMS +RVLVTPS++YCLGPELE SNY+VK+F+ HASDFLRVTFV+EDW KL
Sbjct: 366 SRLVNQNMMSVHRVLVTPSKVYCLGPELETSNYIVKNFALHASDFLRVTFVEEDWGKLSP 425
Query: 1236 DAISAKIDSGVFSEPFRTAIYTRILSILRDGLPICSKKFEFLAFSASQLRSNSVWMFASN 1415
+AIS ++ G+F++P+RT IY RILSILRDGL I SK+F FLAFSASQLRSNSVWMFASN
Sbjct: 426 NAISMSVEQGIFAKPYRTKIYHRILSILRDGLVIGSKRFLFLAFSASQLRSNSVWMFASN 485
Query: 1416 DNLTAETIRKWMGHFNGIRSVSKCAARMGQLFSSSMQTMNXXXXXXXXXXXXEITTEDGK 1595
+++ AE IR+WMG FN IRSVSKCAARMGQLFS+S QTM E+T+ DG
Sbjct: 486 EHVKAEDIREWMGCFNKIRSVSKCAARMGQLFSTSFQTMEVQSPHVEILPDIEVTS-DGV 544
Query: 1596 KYCFSDGIGKISLPFARQIAQKCGLSNTPSAFQIRYGGYKGVIVSDRKSFWKLSLRRSML 1775
YCFSDGIGKIS FA Q+AQKCGLS TPSAFQIRYGGYKGVI DR SF KLSLR SML
Sbjct: 545 SYCFSDGIGKISQAFASQVAQKCGLSYTPSAFQIRYGGYKGVIAVDRNSFRKLSLRGSML 604
Query: 1776 KFESANTMLSVTKWSEYQPCFLNREIVCLLSTLGVKDEIFESMQHDQMQLLDKMLTDTEI 1955
KFES N ML++TKWS+ PC+LNREIV LLSTLGV+D++FE + + + LL KMLT E
Sbjct: 605 KFESKNRMLNITKWSDAMPCYLNREIVILLSTLGVEDKVFEDLLDNHLHLLGKMLTTNEA 664
Query: 1956 ALRVLDTLSGPDIRTAV-KMLIQGYKPNSEPYLLMMLKAHREYQLLDIRSKCRIFVPKGR 2132
AL VL+++ G D++ + +ML QGY PN EPYL MML++H E QL D+RS+CRIF+ KGR
Sbjct: 665 ALDVLESIGGGDVKKILMRMLHQGYAPNLEPYLSMMLQSHFENQLSDLRSRCRIFIHKGR 724
Query: 2133 VLIGCLDETSVLDYGQVYIKVTMTKEELQKENTNFIKNADQITATIVGKVLVTKNPCLHP 2312
VL+GCLDET +L+YGQVY ++TMTK ELQ +F + D+ TA + G V+VTKNPCLHP
Sbjct: 725 VLVGCLDETGILNYGQVYARITMTKAELQSAQQSFFQKVDETTAVVRGNVVVTKNPCLHP 784
Query: 2313 GDIRVLQAVYDPLIDYLGLVDCLIFPQKGKRPHPNECSGGDLDGDLYFVCWDENLIPPET 2492
GD+RVL+AVY+ ++ VDC+IFPQKG+RPHPNECSGGDLDGDLYF+ WDENLIP +T
Sbjct: 785 GDVRVLEAVYEVALEEKAWVDCIIFPQKGERPHPNECSGGDLDGDLYFISWDENLIPRQT 844
Query: 2493 DAPMDYTPTRPRIMDHDVKLEEIQKYFVNYMINDNLGAISTTHLVYADSEPSKARCSKCL 2672
PMDYT R RIMDH+V L+EIQ++FV+YMI+D LGAIST HLV+AD EP KA KCL
Sbjct: 845 VTPMDYTGRRTRIMDHEVTLQEIQRFFVDYMISDTLGAISTAHLVHADREPDKALNPKCL 904
Query: 2673 ELANLHSMAVDFAKTGAPAEMPRALRPKIFPDFMERFEKPMFNSPGVIGKLYRAASSYHE 2852
+LA LHSMAVDFAKTGA AEMPR L+P+ FPDF+ER++KPM+ S GV+GKLYRA +
Sbjct: 905 QLATLHSMAVDFAKTGAAAEMPRFLKPREFPDFLERWDKPMYISEGVLGKLYRAIVNSSV 964
Query: 2853 DLNSETITS----QWVYDYDLLVXXXXXXXXXXXXYYSRYAEKLGSLMNYYGAEHEDEIL 3020
NS+ + S Q YD+ LL + Y +++ SL+NYYGAE E EIL
Sbjct: 965 RSNSDDLGSVRAIQDAYDHALLFDGYEAFIETAKNHKETYLDRMNSLLNYYGAEKEVEIL 1024
Query: 3021 TGNLRNKSAYLQKDRKRYGEMKDRMLIGVKNLKEEVDGWFKCSCPEKDLFKMASAWYQVT 3200
TGNLR KS YLQ+D +RY E+KDR+L+ K+L++EV GWF C E + K+ASAWY VT
Sbjct: 1025 TGNLRQKSVYLQRDNRRYFELKDRILVSAKSLQKEVKGWFTGCCKEDEHKKLASAWYHVT 1084
Query: 3201 YHPDY-RPETRFLSFPWIVSDVLLRIKAARARK 3296
YHP Y L FPW+V D+LL IK RK
Sbjct: 1085 YHPSYCEGSANCLGFPWVVGDILLDIKLHNTRK 1117
>ref|XP_006345040.1| PREDICTED: RNA-dependent RNA polymerase 2-like [Solanum tuberosum]
Length = 1119
Score = 1200 bits (3105), Expect = 0.0
Identities = 613/1111 (55%), Positives = 792/1111 (71%), Gaps = 18/1111 (1%)
Frame = +3
Query: 21 ATLHVSNIPHTAVAAELFDYFDASVG--SVYACKIATARRNWKSKGFGRVQFDTFAAAER 194
AT+ VSNIP +A+A +LFD+FD+ +G SV+AC I + +NWKS+G GRVQF+T
Sbjct: 9 ATVRVSNIPQSAIAKDLFDFFDSLIGKGSVFACDIFSEHKNWKSRGHGRVQFETLQDKLH 68
Query: 195 ARLLDDEGRLPLFQHARLTVSPSHNDIVVRASEGQNRLEAAALHAGVLVGEGHMEIFEAW 374
L ++G L LF+ +L++ S +DI+ R E + R + LH G+LV M++ E W
Sbjct: 69 CLSLSEQGNL-LFKGHQLSLVSSFDDIIARPVEPKCRFQDGILHTGLLVKNDVMQVLETW 127
Query: 375 EQVRVEIMPERKKLELFVDYGGEKYKLEVLFGDILESSSCCLDGRES-ILLQLQYAPRCF 551
E V+ IMPERK LE +V + E Y+LEV FGD++E++ C L+ ++S +LL+L++AP+ +
Sbjct: 128 EDVKTLIMPERKCLEFWVSHAEECYRLEVQFGDVVEATVCSLENQKSALLLKLKHAPKLY 187
Query: 552 VRIHG---LEKESNDRFRVCREDIQFLWVRTTDFSPNGSIGKSFYYCLQLSDGLSCAEIL 722
R+ G K S DR+ +C+ED +FLWVRTTDFS SIG S C + DG +++L
Sbjct: 188 QRVSGPAVASKFSADRYHICKEDCEFLWVRTTDFSNIKSIGCSSSLCWETEDGWLSSDLL 247
Query: 723 RKLPFSRALG---ELIXXXXXXXXXXXXXXFNCLGDCSVPYEILYQINSLVHMQKITFRQ 893
LP +L D +PYEIL+Q+NSLV QKI+
Sbjct: 248 SSLPCCNKDVIDLDLDKVGDIYSGSEFVPLVRIPSDLKLPYEILFQLNSLVQTQKISLGA 307
Query: 894 VTIDLFDILKGLPSDVAIKILMKMHKLVSTCYDPVQFIKDELSRIKRSSTSPFSKSN--- 1064
V DL ++L L D A+ IL KMHKL STC++P+ FIK L + +++ + S S
Sbjct: 308 VNPDLIEVLSKLELDTAMMILQKMHKLQSTCFEPLTFIKTRLHVLGKNNKNQLSSSYSRL 367
Query: 1065 IAQNMMSCYRVLVTPSRIYCLGPELEKSNYVVKHFSAHASDFLRVTFVDEDWSKLPSDAI 1244
+ +MMS +RVLVTPS+IYCLGPELE SNY+VK+F+ HASDFLRVTFV+EDW KL +A+
Sbjct: 368 VNHSMMSVHRVLVTPSKIYCLGPELETSNYIVKNFAEHASDFLRVTFVEEDWGKLFPNAV 427
Query: 1245 SAKIDSGVFSEPFRTAIYTRILSILRDGLPICSKKFEFLAFSASQLRSNSVWMFASNDNL 1424
S ++ G+F++P+RT IY RILSILR+G+ I +K+F FLAFSASQLRSNSVWMFASN+ +
Sbjct: 428 SMSVEQGIFAKPYRTKIYHRILSILREGIVIGTKRFFFLAFSASQLRSNSVWMFASNEYV 487
Query: 1425 TAETIRKWMGHFNGIRSVSKCAARMGQLFSSSMQTMNXXXXXXXXXXXXEITTEDGKKYC 1604
AE IR+WMG FN IRS+SKCAARMGQLFS+S+QTM E+T+ DG YC
Sbjct: 488 KAEDIREWMGCFNKIRSISKCAARMGQLFSTSVQTMEVQLQHVEILPDIEVTS-DGVSYC 546
Query: 1605 FSDGIGKISLPFARQIAQKCGLSNTPSAFQIRYGGYKGVIVSDRKSFWKLSLRRSMLKFE 1784
FSDGIGKIS FARQ+AQKCGL++TPSAFQIRYGGYKGVI DR SF KLSLR SMLKFE
Sbjct: 547 FSDGIGKISQAFARQVAQKCGLNHTPSAFQIRYGGYKGVIAVDRNSFRKLSLRGSMLKFE 606
Query: 1785 SANTMLSVTKWSEYQPCFLNREIVCLLSTLGVKDEIFESMQHDQMQLLDKMLTDTEIALR 1964
S N ML++TKWS+ PC+LNREIV LLSTLGV+D+ E + + ++LL KMLT E AL
Sbjct: 607 SKNRMLNITKWSDAMPCYLNREIVILLSTLGVEDKALEDLLDNHLRLLGKMLTTNEAALD 666
Query: 1965 VLDTLSGPDIRTAV-KMLIQGYKPNSEPYLLMMLKAHREYQLLDIRSKCRIFVPKGRVLI 2141
VL+++ G D++ + +ML+QGY PN EPYL MML++H E Q+ D+RS+CRIF+PKGR+L+
Sbjct: 667 VLESMGGGDVKKILMRMLLQGYAPNREPYLSMMLQSHFENQISDLRSRCRIFIPKGRILV 726
Query: 2142 GCLDETSVLDYGQVYIKVTMTKEELQKENTNFIKNADQITATIVGKVLVTKNPCLHPGDI 2321
GCLDET +L YG+VY+++TMTK ELQ NF + D+ TA + GKV+VTKNPCLHPGD+
Sbjct: 727 GCLDETGILKYGEVYVRITMTKAELQNGQQNFFQKVDETTAVVRGKVVVTKNPCLHPGDV 786
Query: 2322 RVLQAVYDPLIDYLGLVDCLIFPQKGKRPHPNECSGGDLDGDLYFVCWDENLIPPETDAP 2501
RVL+AVY+ ++ VDC+IFPQ G+RPHPNECSGGDLDGDLYF+CWDE+LIP +T P
Sbjct: 787 RVLEAVYEVTLEEKTWVDCIIFPQNGERPHPNECSGGDLDGDLYFICWDESLIPHQTVTP 846
Query: 2502 MDYTPTRPRIMDHDVKLEEIQKYFVNYMINDNLGAISTTHLVYADSEPSKARCSKCLELA 2681
MDYT RPRIMDH+V LEEIQ++FV+YMI+D LGAIST HLV+AD EP KA SKCL+LA
Sbjct: 847 MDYTGRRPRIMDHEVTLEEIQRFFVDYMISDTLGAISTAHLVHADREPDKALNSKCLQLA 906
Query: 2682 NLHSMAVDFAKTGAPAEMPRALRPKIFPDFMERFEKPMFNSPGVIGKLYRAASSYHEDLN 2861
LHSMAVDFAKTGA AEMPR L+P+ FPDFMER++KPM+ S GV+GKLYR + N
Sbjct: 907 TLHSMAVDFAKTGAAAEMPRFLKPREFPDFMERWDKPMYISEGVLGKLYRGVIKSYIRRN 966
Query: 2862 SETITS----QWVYDYDLLVXXXXXXXXXXXXYYSRYAEKLGSLMNYYGAEHEDEILTGN 3029
S+ +++ Q YD+DLLV + Y + + SL+NYYGAE E EILTGN
Sbjct: 967 SDDLSTDRAIQDAYDHDLLVEGYEAFIETAKTHKEMYLDSMNSLLNYYGAEKEVEILTGN 1026
Query: 3030 LRNKSAYLQKDRKRYGEMKDRMLIGVKNLKEEVDGWFKCSCPEKDLFKMASAWYQVTYHP 3209
LR KS YLQ+D +RY E+KDR+L+ K+L +EV GWF C E D K+ SAWY VTYHP
Sbjct: 1027 LRQKSVYLQRDNRRYFELKDRILVSAKSLHKEVKGWFSGCCTEDDHQKLVSAWYHVTYHP 1086
Query: 3210 DYRPET-RFLSFPWIVSDVLLRIKAARARKS 3299
Y E+ L FPW+V D+LL IK+ RK+
Sbjct: 1087 SYCHESANCLGFPWVVGDILLNIKSHNTRKT 1117
>ref|NP_001183867.1| RNA-dependent DNA polymerase [Zea mays] gi|89473792|gb|ABD72708.1|
RNA-dependent RNA polymerase [Zea mays]
gi|374257933|gb|AEZ01781.1| RNA-dependent DNA polymerase
[Zea mays] gi|414586834|tpg|DAA37405.1| TPA: mediator of
paramutation1 [Zea mays]
Length = 1127
Score = 1197 bits (3097), Expect = 0.0
Identities = 625/1101 (56%), Positives = 772/1101 (70%), Gaps = 12/1101 (1%)
Frame = +3
Query: 21 ATLHVSNIPHTAVAAELFDYFDASV---GSVYACKIATARRNWKSKGFGRVQFDTFAAAE 191
AT+ VSNIP +A+AAEL +FD++V G+ +AC+I A R W S+G G VQFD+ AAA
Sbjct: 12 ATVRVSNIPASAIAAELLAFFDSAVTIAGATFACEIVAAHRGWLSRGHGFVQFDSSAAAT 71
Query: 192 RARLLDDEGRLPLFQHARLTVSPSHNDIVVRASEGQNRLEAAALHAGVLVGEGHMEIFEA 371
A L GRLP F + L+VSP+ D++ RA + R +A+L G V E +E+ +
Sbjct: 72 HAIDLASSGRLPPFLGSCLSVSPARADLLPRAPDLSLRAASASLILGNRVAERELEVAYS 131
Query: 372 WEQVRVEIMPERKKLELFVDYGGEKYKLEVLFGDILESSSCCLDGRESILLQLQYAPRCF 551
+ VR E++P ++++L++ + + YKLEVLF DI E C LDG +ILLQL YAPR
Sbjct: 132 CDGVRAEVIPRMRRVDLYLKHDSQSYKLEVLFEDINECFGCHLDGTGAILLQLTYAPRIH 191
Query: 552 VRIHGLEKES---NDRFRVCREDIQFLWVRTTDFSPNGSIGKSFYYCLQLSDGLSCAEIL 722
+ I G +S +DRF C+ED +F WVR DF+PN S G+ L+LS G S + IL
Sbjct: 192 IAISGSTVKSRFTDDRFHACKEDAKFAWVRALDFTPNSSFGECSTLVLKLSKGASVSYIL 251
Query: 723 RKLPFSRALGELIXXXXXXXXXXXXXX--FNCLGDCSVPYEILYQINSLVHMQKITFRQV 896
LPFS LGEL +C SVPYE+L+++NSLVHM K+ R V
Sbjct: 252 ESLPFSGELGELAIASMDVFGSSSNVVPLVDCPNGFSVPYEVLFRLNSLVHMGKLVARHV 311
Query: 897 TIDLFDILKGLPSDVAIKILMKMHKLVSTCYDPVQFIKDELSRIKRSSTSPFSKSNIAQN 1076
DLF +L+ L D +I KM KL STCY+P+QFI+ E + + S +
Sbjct: 312 NADLFKVLEDLSIDTLRRIFEKMSKLKSTCYEPLQFIRHEAHSMNMRKKA-LSNKRESGK 370
Query: 1077 MMSCYRVLVTPSRIYCLGPELEKSNYVVKHFSAHASDFLRVTFVDEDWSKLPSDAISAKI 1256
+M CYR+ +TPS+IYCLGPE E SNYVVK+ S +ASDF RVTFVDEDWSKL +A+SA+
Sbjct: 371 LMRCYRIHITPSKIYCLGPEEEVSNYVVKYHSEYASDFARVTFVDEDWSKLSPNALSART 430
Query: 1257 DSGVFSEPFRTAIYTRILSILRDGLPICSKKFEFLAFSASQLRSNSVWMFASNDNLTAET 1436
+ G FS+P +T +Y RILSIL++G I KK+EFLAFSASQLR NSVWMFASN +LTAE
Sbjct: 431 EQGFFSKPLKTGLYHRILSILKEGFCIGPKKYEFLAFSASQLRGNSVWMFASNSSLTAEN 490
Query: 1437 IRKWMGHFNGIRSVSKCAARMGQLFSSSMQTMNXXXXXXXXXXXXEITTEDGKKYCFSDG 1616
IR+WMGHF IRSVSKCAARMGQLFSSS QT E+TT DG KY FSDG
Sbjct: 491 IRRWMGHFEDIRSVSKCAARMGQLFSSSRQTFEVSSYDVEVIPDIEVTT-DGTKYIFSDG 549
Query: 1617 IGKISLPFARQIAQKCGL--SNTPSAFQIRYGGYKGVIVSDRKSFWKLSLRRSMLKFESA 1790
IGKIS FARQ+A+ GL ++ PSAFQIRYGGYKGVI D SF+ LSLR SM KFES
Sbjct: 550 IGKISTRFARQVAKLIGLDPAHPPSAFQIRYGGYKGVITIDPTSFFNLSLRPSMKKFESK 609
Query: 1791 NTMLSVTKWSEYQPCFLNREIVCLLSTLGVKDEIFESMQHDQMQLLDKMLTDTEIALRVL 1970
+TML++T WS+ QPC++NREI+ LLSTLG+KDE+FESMQ D M D MLT+ E AL VL
Sbjct: 610 STMLNITNWSKSQPCYVNREIISLLSTLGIKDEVFESMQQDDMHESDGMLTNKEAALSVL 669
Query: 1971 DTLSGPDIRTAVKMLIQGYKPNSEPYLLMMLKAHREYQLLDIRSKCRIFVPKGRVLIGCL 2150
+ G D +TA ML+QGY+P+SEPYLLM+LKAHR +L DIR++C+I V KGRVLIGCL
Sbjct: 670 GKIGGGDTKTAADMLLQGYEPSSEPYLLMILKAHRANRLTDIRTRCKIHVQKGRVLIGCL 729
Query: 2151 DETSVLDYGQVYIKVTMTKEELQKENTNFIKNADQITATIVGKVLVTKNPCLHPGDIRVL 2330
DET L+YGQVYI++T +E + F N D TA IVGKV +TKNPCLHPGD+RVL
Sbjct: 730 DETCKLEYGQVYIRITKNHKEQKYSEQPFFCNDDGKTAVIVGKVAITKNPCLHPGDVRVL 789
Query: 2331 QAVYDPLIDYLGLVDCLIFPQKGKRPHPNECSGGDLDGDLYFVCWDENLIPPETDAPMDY 2510
+AVYDP +D GL+DC++FPQ+G+RPHPNECSGGDLDGDL+F+ WD+ LIP + DAPMDY
Sbjct: 790 EAVYDPGLDARGLIDCVVFPQRGERPHPNECSGGDLDGDLFFITWDDKLIPEKVDAPMDY 849
Query: 2511 TPTRPRIMDHDVKLEEIQKYFVNYMINDNLGAISTTHLVYADSEPSKARCSKCLELANLH 2690
T TRPRIMDH V LEEIQK+FV+YMIND LGAIST HL++AD +P KAR +C++LA LH
Sbjct: 850 TATRPRIMDHAVTLEEIQKHFVSYMINDTLGAISTAHLIHADRDPLKARSPECVQLAALH 909
Query: 2691 SMAVDFAKTGAPAEMPRALRPKIFPDFMERFEKPMFNSPGVIGKLYRAASSYHEDLNS-- 2864
SMAVDFAKTGAPAEMP ALRP+ FPDFMER+E+PM+ S GV+GKLYRAA + ED +
Sbjct: 910 SMAVDFAKTGAPAEMPLALRPREFPDFMERWERPMYVSNGVLGKLYRAALRHEEDAEALL 969
Query: 2865 ETITSQWVYDYDLLVXXXXXXXXXXXXYYSRYAEKLGSLMNYYGAEHEDEILTGNLRNKS 3044
VYD DL V Y YAE+LG+LM YY AE EDEILTGN+RNK
Sbjct: 970 PAGPPSCVYDPDLEVAGFDEFLDAAEERYEAYAERLGALMTYYSAEREDEILTGNIRNKL 1029
Query: 3045 AYLQKDRKRYGEMKDRMLIGVKNLKEEVDGWFKCSCPEKDLFKMASAWYQVTYHPDYRPE 3224
YL++D KRY EMKDR++ V L EV GW + +C E D ++ASAWY VTYHPD R E
Sbjct: 1030 VYLRRDNKRYFEMKDRIIAAVDALHAEVRGWLR-ACKEDDASRVASAWYHVTYHPDRRGE 1088
Query: 3225 TRFLSFPWIVSDVLLRIKAAR 3287
RF SFPWI+ D LL IKAAR
Sbjct: 1089 KRFWSFPWIICDTLLAIKAAR 1109
>ref|XP_004236120.1| PREDICTED: RNA-dependent RNA polymerase 2-like [Solanum lycopersicum]
Length = 1119
Score = 1192 bits (3084), Expect = 0.0
Identities = 609/1111 (54%), Positives = 793/1111 (71%), Gaps = 18/1111 (1%)
Frame = +3
Query: 21 ATLHVSNIPHTAVAAELFDYFDASVG--SVYACKIATARRNWKSKGFGRVQFDTFAAAER 194
AT+ VSNIP +A+A +L ++FD+ +G SV+AC I + +NWKS+G GRVQF+T
Sbjct: 9 ATVRVSNIPQSAIAKDLSNFFDSLIGKGSVFACDIHSEHKNWKSRGHGRVQFETLQDKLH 68
Query: 195 ARLLDDEGRLPLFQHARLTVSPSHNDIVVRASEGQNRLEAAALHAGVLVGEGHMEIFEAW 374
L ++G L LF+ +L++ S +DI+ R E + R +A LH G+LV + M++ E W
Sbjct: 69 CLSLAEQGNL-LFKGHQLSLVSSFDDIITRPVEPKCRFQAGILHTGLLVEKDVMQVLETW 127
Query: 375 EQVRVEIMPERKKLELFVDYGGEKYKLEVLFGDILESSSCCLDGRES-ILLQLQYAPRCF 551
E V+ IMPERK LE +V + E Y+LEV FGD+ E + C ++ ++S +LL+L++AP+ +
Sbjct: 128 EDVKTLIMPERKCLEFWVSHAEECYRLEVQFGDVTEGTLCSVENQKSALLLKLKHAPKLY 187
Query: 552 VRIHG---LEKESNDRFRVCREDIQFLWVRTTDFSPNGSIGKSFYYCLQLSDGLSCAEIL 722
R+ G K S DR+ +C+ED +FLW+RTTDFS SIG S C + DG +++
Sbjct: 188 QRVSGPAVASKFSADRYHICKEDCEFLWIRTTDFSNIKSIGCSSSLCWETEDGWLSSDLF 247
Query: 723 RKLPFSRALG---ELIXXXXXXXXXXXXXXFNCLGDCSVPYEILYQINSLVHMQKITFRQ 893
LP +L D +PYEIL+Q+NSLV QKI+
Sbjct: 248 SSLPCCNQDVIDLDLDKVGDIYSGSEFVPLVRIPSDLKLPYEILFQLNSLVQTQKISLGA 307
Query: 894 VTIDLFDILKGLPSDVAIKILMKMHKLVSTCYDPVQFIKDELSRIKRSSTSPFSKSN--- 1064
+ +L ++L L D A+ IL KMHKL S C+DP+ FIK L + +++ + S S
Sbjct: 308 INPNLIEVLSKLELDTAMMILQKMHKLQSICFDPLLFIKTRLHVLGKNNKNRPSSSYSRL 367
Query: 1065 IAQNMMSCYRVLVTPSRIYCLGPELEKSNYVVKHFSAHASDFLRVTFVDEDWSKLPSDAI 1244
+ +MMS +RVLVTPS+IYCLGPELE SNY+VK+F++HASDFLRVTFV+EDW KL +A+
Sbjct: 368 VNHSMMSVHRVLVTPSKIYCLGPELETSNYIVKNFASHASDFLRVTFVEEDWGKLFPNAV 427
Query: 1245 SAKIDSGVFSEPFRTAIYTRILSILRDGLPICSKKFEFLAFSASQLRSNSVWMFASNDNL 1424
S ++ G+F++P+RT IY RILSILR+G+ I +K+F FLAFSASQLRSNSVWMFASN+ +
Sbjct: 428 SMSVEQGIFAKPYRTKIYHRILSILREGIVIGTKRFFFLAFSASQLRSNSVWMFASNEYV 487
Query: 1425 TAETIRKWMGHFNGIRSVSKCAARMGQLFSSSMQTMNXXXXXXXXXXXXEITTEDGKKYC 1604
AE IR+WMG FN IRS+SKCAARMGQLFS+S+QTM E+T+ DG YC
Sbjct: 488 KAEDIREWMGCFNKIRSISKCAARMGQLFSTSVQTMEVKLQHVEILPDIEVTS-DGVSYC 546
Query: 1605 FSDGIGKISLPFARQIAQKCGLSNTPSAFQIRYGGYKGVIVSDRKSFWKLSLRRSMLKFE 1784
FSDGIGKIS FARQ+AQKCGL++TPSAFQIRYGGYKGVI DR SF KLSLR SMLKFE
Sbjct: 547 FSDGIGKISQAFARQVAQKCGLNHTPSAFQIRYGGYKGVIAVDRNSFRKLSLRGSMLKFE 606
Query: 1785 SANTMLSVTKWSEYQPCFLNREIVCLLSTLGVKDEIFESMQHDQMQLLDKMLTDTEIALR 1964
S N ML++TKWS+ PC+LNREIV LLSTLGV+D+ FE + + + LL KMLT E AL
Sbjct: 607 SKNRMLNITKWSDAMPCYLNREIVILLSTLGVEDKAFEDLLDNHLCLLGKMLTTNEAALD 666
Query: 1965 VLDTLSGPDIRTAV-KMLIQGYKPNSEPYLLMMLKAHREYQLLDIRSKCRIFVPKGRVLI 2141
VL+++ G +++ + +ML+QGY PN EPYL MML++H E Q+ D+RS+CRIF+PKGR+L+
Sbjct: 667 VLESMGGGEVKKILMRMLLQGYAPNQEPYLSMMLQSHFENQISDLRSRCRIFIPKGRILV 726
Query: 2142 GCLDETSVLDYGQVYIKVTMTKEELQKENTNFIKNADQITATIVGKVLVTKNPCLHPGDI 2321
GCLDET +L YGQVY+++TMTK ELQ NF + D+ TA + GKV+VTKNPCLHPGD+
Sbjct: 727 GCLDETGILKYGQVYVRITMTKAELQNGQQNFFQKVDETTAVVRGKVVVTKNPCLHPGDV 786
Query: 2322 RVLQAVYDPLIDYLGLVDCLIFPQKGKRPHPNECSGGDLDGDLYFVCWDENLIPPETDAP 2501
RVL+AVY+ ++ VDC+IFPQKG+RPHPNECSGGDLDGDLYF+CWDE+LIP +T P
Sbjct: 787 RVLEAVYEVTLEEKTWVDCIIFPQKGERPHPNECSGGDLDGDLYFICWDESLIPCQTVTP 846
Query: 2502 MDYTPTRPRIMDHDVKLEEIQKYFVNYMINDNLGAISTTHLVYADSEPSKARCSKCLELA 2681
MDYT RPRIMDH+V LEEIQ++FV+YMI+D LGAIST HLV+AD EP KA SKCL+LA
Sbjct: 847 MDYTGRRPRIMDHEVTLEEIQRFFVDYMISDTLGAISTAHLVHADREPDKALNSKCLQLA 906
Query: 2682 NLHSMAVDFAKTGAPAEMPRALRPKIFPDFMERFEKPMFNSPGVIGKLYRAASSYHEDLN 2861
LHSMAVDFAKTGA AEMPR L+P+ FPDFMER++KPM+ S GV+GKLYR + N
Sbjct: 907 TLHSMAVDFAKTGAAAEMPRFLKPREFPDFMERWDKPMYISEGVLGKLYRGVMKSYIRRN 966
Query: 2862 SETITS----QWVYDYDLLVXXXXXXXXXXXXYYSRYAEKLGSLMNYYGAEHEDEILTGN 3029
S+ +++ Q YD+DLLV + + Y + + SL+NYYGAE E EILTGN
Sbjct: 967 SDDLSADRAIQDAYDHDLLVEGYEAFTETAKTHKAMYLDSMNSLLNYYGAEKEVEILTGN 1026
Query: 3030 LRNKSAYLQKDRKRYGEMKDRMLIGVKNLKEEVDGWFKCSCPEKDLFKMASAWYQVTYHP 3209
LR KS YLQ+D +RY E+KDR+L+ K+L +EV GWF C E D K+ASAWY VTYHP
Sbjct: 1027 LRQKSVYLQRDNRRYFELKDRILVSAKSLHKEVKGWFTSCCQEDDHQKLASAWYHVTYHP 1086
Query: 3210 DYRPET-RFLSFPWIVSDVLLRIKAARARKS 3299
Y E+ L FPW+V D+LL +K+ RK+
Sbjct: 1087 SYCHESANCLGFPWVVGDILLNMKSHNTRKT 1117
>gb|EMJ12511.1| hypothetical protein PRUPE_ppa000513mg [Prunus persica]
Length = 1118
Score = 1189 bits (3076), Expect = 0.0
Identities = 619/1109 (55%), Positives = 788/1109 (71%), Gaps = 21/1109 (1%)
Frame = +3
Query: 18 RATLHVSNIPHTAVAAELFDYFDASVG--SVYACKIATARRNWKSKGFGRVQFDTFAAAE 191
R T+ VSNIP T A EL + + +G SV+A +I + +NWKS+GFGRVQF T A
Sbjct: 6 RPTVRVSNIPQTVTAKELLSFLQSKLGTDSVFAVEIISDHKNWKSRGFGRVQFTTLEAKS 65
Query: 192 RARLLDDEGRLPLFQHARLTVSPSHNDIVVRASEGQNRLEAAALHAGVLVGEGHMEIFEA 371
A L + L +F+ L +S +++DI+ R + + RL LHAG +V M + E+
Sbjct: 66 EAYSLSLQNGL-VFKSESLRLSETYDDIIQRPVDPKRRLNGTVLHAGFMVKGDCMSMLES 124
Query: 372 WEQVRVEIMPERKKLELFVDYGGEKYKLEVLFGDILESSSCCLDGRE--SILLQLQYAPR 545
WE VR +MPERK++E +V E YKLE+ F +I+ES C L G + ++LL+L++ PR
Sbjct: 125 WEGVRAWVMPERKRVEFWVWLRDECYKLEIAFENIMESFGCRLGGEKVNALLLKLKFGPR 184
Query: 546 CFVRIHG---LEKESNDRFRVCREDIQFLWVRTTDFSPNGSIGKSFYYCLQLSDGLSCAE 716
F +I G + S DR+ VC++D FLWVRTTDFS SIG S +C ++ + S ++
Sbjct: 185 IFRKISGPNVAARFSTDRYHVCKDDFDFLWVRTTDFSDMKSIGYSTSFCWEIEEEFSVSD 244
Query: 717 ILRKLPFSRA--LGELIXXXXXXXXXXXXXX--FNCLGDCSVPYEILYQINSLVHMQKIT 884
+ P+ + + +LI C D +PYEIL+Q+N+LVH QKI+
Sbjct: 245 VFECFPYYKDNDVVDLILDNGEKYCSPSETVPLVKCRSDSKLPYEILFQLNALVHSQKIS 304
Query: 885 FRQVTIDLFDILKGLPSDVAIKILMKMHKLVSTCYDPVQFIKDELSRIKR---SSTSPFS 1055
DL + L GL D +L K+HK +TCYDP+ F+K +L ++R S SP+
Sbjct: 305 LAATDSDLIEFLSGLSVDTTNVLLEKLHKRKTTCYDPLSFLKMQLHVLERNHKSRPSPY- 363
Query: 1056 KSNIAQNMMSCYRVLVTPSRIYCLGPELEKSNYVVKHFSAHASDFLRVTFVDEDWSKLPS 1235
K + N+MSC+RVL+TPS+I CLGPELEKSNYVVK+F+A+ASDF+RVTFVDEDWSKLP+
Sbjct: 364 KRLMEHNVMSCHRVLITPSKICCLGPELEKSNYVVKNFAAYASDFMRVTFVDEDWSKLPA 423
Query: 1236 DAISAKIDSGVFSEPFRTAIYTRILSILRDGLPICSKKFEFLAFSASQLRSNSVWMFASN 1415
+AIS I G+F++P RT IY R+LSILRDG+ I K+FEFLAFSASQLRS+SVWMF+SN
Sbjct: 424 NAISTSIQQGIFAKPHRTGIYHRMLSILRDGIVIGEKRFEFLAFSASQLRSSSVWMFSSN 483
Query: 1416 DNLTAETIRKWMGHFNGIRSVSKCAARMGQLFSSSMQTMNXXXXXXXXXXXXEITTEDGK 1595
DN+ AE IR+WMG F+ IRS+SKCAARMGQLFSSS QT+ E T+ DG
Sbjct: 484 DNVKAEDIREWMGCFSKIRSISKCAARMGQLFSSSTQTLVVPAQDVEIIPDVE-TSSDGV 542
Query: 1596 KYCFSDGIGKISLPFARQIAQKCGLSNTPSAFQIRYGGYKGVIVSDRKSFWKLSLRRSML 1775
YCFSDGIGKISL FAR++AQKCGL TPSAFQIRYGGYKGVI D +SF KLSLR SML
Sbjct: 543 TYCFSDGIGKISLSFARKVAQKCGLDQTPSAFQIRYGGYKGVIAVDCRSFRKLSLRSSML 602
Query: 1776 KFESANTMLSVTKWSEYQPCFLNREIVCLLSTLGVKDEIFESMQHDQMQLLDKMLTDTEI 1955
KFES N ML+VTKWS+ PC+LNREI+ LLSTLGVKDE FE++Q +Q++LL KM T+
Sbjct: 603 KFESKNRMLNVTKWSDAMPCYLNREIISLLSTLGVKDETFEALQEEQLRLLGKMRTERGA 662
Query: 1956 ALRVLDTLSGPDIR-TAVKMLIQGYKPNSEPYLLMMLKAHREYQLLDIRSKCRIFVPKGR 2132
AL V + L+G D + T VKML+ GY+PN+EPYL MML+A+ E L D++S+CRIFVPKGR
Sbjct: 663 ALNVFERLNGADSKNTLVKMLLHGYEPNAEPYLSMMLQAYYENHLSDLKSRCRIFVPKGR 722
Query: 2133 VLIGCLDETSVLDYGQVYIKVTMTKEELQKENTNFIKNADQITATIVGKVLVTKNPCLHP 2312
VL+GCLDET LDYGQVY+++TMTK E + + +F + D+ T + GKV+VTKNPCLHP
Sbjct: 723 VLVGCLDETGNLDYGQVYVRITMTKAEQEMGDQSFFQKVDETTLVVTGKVVVTKNPCLHP 782
Query: 2313 GDIRVLQAVYDPLIDYLGLVDCLIFPQKGKRPHPNECSGGDLDGDLYFVCWDENLIPPET 2492
GD+RVL AVYD +++ +VDCLIFPQKG+RPHPNECSGGDLDGDL+F+ WD++L+P T
Sbjct: 783 GDVRVLDAVYDVVLEEKNMVDCLIFPQKGERPHPNECSGGDLDGDLFFISWDKDLVPSHT 842
Query: 2493 DAPMDYTPTRPRIMDHDVKLEEIQKYFVNYMINDNLGAISTTHLVYADSEPSKARCSKCL 2672
PMDY+ RPRIMDH V LEEIQK+FV+YMINDNLGAIST HLV+AD EP KA KCL
Sbjct: 843 VPPMDYSARRPRIMDHTVTLEEIQKFFVDYMINDNLGAISTAHLVHADHEPDKALNPKCL 902
Query: 2673 ELANLHSMAVDFAKTGAPAEMPRALRPKIFPDFMERFEKPMFNSPGVIGKLYRA--ASSY 2846
+LA+LHSMAVDFAKTGAPAEM R L+PK FPDFMER +KPM+ S G +GKLYRA S
Sbjct: 903 QLADLHSMAVDFAKTGAPAEMSRTLKPKEFPDFMERVDKPMYISNGALGKLYRAVVGSVL 962
Query: 2847 HEDLN---SETITSQWVYDYDLLVXXXXXXXXXXXXYYSRYAEKLGSLMNYYGAEHEDEI 3017
E N SE I ++ YD DL V + Y EK+ ++MNYYGA EDEI
Sbjct: 963 QEKTNLVWSEQI-AEAAYDQDLEVDGLESVLEVAKGHRDMYIEKMRTMMNYYGAVTEDEI 1021
Query: 3018 LTGNLRNKSAYLQKDRKRYGEMKDRMLIGVKNLKEEVDGWFKCSCPEKDLFKMASAWYQV 3197
LTGNLRN++AYLQ+D +RYG+MKDR+ + +KNL++E G F+ SCP + +MASAWY V
Sbjct: 1022 LTGNLRNRAAYLQRDNRRYGDMKDRISLSLKNLQKEAKGLFESSCPVSEHQRMASAWYHV 1081
Query: 3198 TYHPDY-RPETRFLSFPWIVSDVLLRIKA 3281
TYHP Y + + LSFPWIV D+LL IKA
Sbjct: 1082 TYHPSYFQQDMNCLSFPWIVGDILLNIKA 1110
>gb|EOY20662.1| RNA-dependent RNA polymerase 2 isoform 1 [Theobroma cacao]
gi|508773407|gb|EOY20663.1| RNA-dependent RNA polymerase
2 isoform 1 [Theobroma cacao]
Length = 1149
Score = 1188 bits (3073), Expect = 0.0
Identities = 617/1131 (54%), Positives = 799/1131 (70%), Gaps = 26/1131 (2%)
Frame = +3
Query: 18 RATLHVSNIPHTAVAAELFDYFDASVGS--VYACKIATARRNWKSKGFGRVQFDTFAAAE 191
R TL V+N+P TA+A +L ++ + +G+ V+A +I+T R NWKS+GFGRVQF T A
Sbjct: 13 RPTLRVTNVPQTAIAKDLLEFLEYKLGTDTVFAIEISTDRNNWKSRGFGRVQFATLEAKS 72
Query: 192 RARLLDDEGRLPLFQHARLTVSPSHNDIVVRASEGQNRLEAAALHAGVLVGEGHMEIFEA 371
+A LL L H+ L +S +++DI+ R +RL+ LH G +V + ++ + E
Sbjct: 73 KAHLLSLRNDLVFKSHS-LKLSETYDDIIPRPIRADHRLDGGVLHVGFMVQDDYLRVLER 131
Query: 372 WEQVRVEIMPERKKLELFVDYGGEKYKLEVLFGDILESSSCCLDGRE--SILLQLQYAPR 545
WE VR +MPER++LE ++ GE YKLEVLF D+LE+ CC +G ++LL+++YAPR
Sbjct: 132 WEDVRGWLMPERRRLEFWLWNNGECYKLEVLFDDVLETVGCCFNGSSCNALLLRVKYAPR 191
Query: 546 CFVRIHG---LEKESNDRFRVCREDIQFLWVRTTDFSPNGSIGKS--FYY-------CLQ 689
+ ++ G K DR+ +C+E+ FLWVRTTDFS ++G+S FY+ L
Sbjct: 192 IYQKVSGPNIASKLRPDRYHICKENFDFLWVRTTDFSRTKAVGQSTAFYWEINAELLTLD 251
Query: 690 LSDGLSCAEILRKLPFSRALGELIXXXXXXXXXXXXXXFNCLGDCSVPYEILYQINSLVH 869
L SC K + GE D + YEIL+Q+NSLVH
Sbjct: 252 LFSCFSCYREDMKGLTLKGGGEFSSAPEIVPLVKGP------SDSKLAYEILFQLNSLVH 305
Query: 870 MQKITFRQVTIDLFDILKGLPSDVAIKILMKMHKLVSTCYDPVQFIKDELSRIKRSSTS- 1046
QKI+ V DL DIL+ L + A+ IL K HKL+STCY+PV F+K+ L +R+ S
Sbjct: 306 TQKISIASVDTDLIDILRVLAVETAVMILQKFHKLLSTCYNPVSFVKENLPVSERNFQSR 365
Query: 1047 PFS--KSNIAQNMMSCYRVLVTPSRIYCLGPELEKSNYVVKHFSAHASDFLRVTFVDEDW 1220
P S K I N+MSC+R LVTPS+IYCLGPELE SNYVVK+F+ +ASDF+RV+FV+EDW
Sbjct: 366 PLSSFKRLIDHNVMSCHRALVTPSKIYCLGPELETSNYVVKNFAEYASDFMRVSFVEEDW 425
Query: 1221 SKLPSDAISAKIDSGVFSEPFRTAIYTRILSILRDGLPICSKKFEFLAFSASQLRSNSVW 1400
KL ++AIS + G+FS+PFRT IY RILS+L+ G+ I K+FEFLAFSASQLRSNSVW
Sbjct: 426 GKLSANAISTSVQLGIFSKPFRTKIYHRILSVLQHGIVIGDKRFEFLAFSASQLRSNSVW 485
Query: 1401 MFASNDNLTAETIRKWMGHFNGIRSVSKCAARMGQLFSSSMQTMNXXXXXXXXXXXXEIT 1580
MFASND +TAE +R+WMG F IRSVSKCAARMGQLFSSS+ T+ E+T
Sbjct: 486 MFASNDKVTAEDVREWMGCFKKIRSVSKCAARMGQLFSSSLPTLVVPVQDVKIIPDIEVT 545
Query: 1581 TEDGKKYCFSDGIGKISLPFARQIAQKCGLSNTPSAFQIRYGGYKGVIVSDRKSFWKLSL 1760
+ DG YCFSDGIGKISLPFAR++AQKCGL++TPSAFQIRYGGYKGV+ DR SF K+SL
Sbjct: 546 S-DGINYCFSDGIGKISLPFAREVAQKCGLNDTPSAFQIRYGGYKGVVAVDRNSFRKMSL 604
Query: 1761 RRSMLKFESANTMLSVTKWSEYQPCFLNREIVCLLSTLGVKDEIFESMQHDQMQLLDKML 1940
R SM KFES ML+VTKWSE PCFLNREIV LLSTLG+KDE FE++Q +Q+ LL +ML
Sbjct: 605 RGSMHKFESKIRMLNVTKWSESMPCFLNREIVTLLSTLGIKDEAFETLQQEQLHLLGQML 664
Query: 1941 TDTEIALRVLDTLSGPDIRTA-VKMLIQGYKPNSEPYLLMMLKAHREYQLLDIRSKCRIF 2117
T+ E AL VL +L G D + VKML+QGY+PN EPYL MML A+ L D++ +CRI+
Sbjct: 665 TNREAALDVLQSLCGADSQNILVKMLLQGYEPNVEPYLSMMLLANHVSLLSDLKCRCRIY 724
Query: 2118 VPKGRVLIGCLDETSVLDYGQVYIKVTMTKEELQKENTNFIKNADQITATIVGKVLVTKN 2297
VPKG+VL+GCLDET+ L+YGQVY+++++ K EL+ + NF D+ TA ++GKV+VTKN
Sbjct: 725 VPKGQVLVGCLDETATLNYGQVYVRLSIKKAELEHADQNFFHKVDEKTAIVIGKVVVTKN 784
Query: 2298 PCLHPGDIRVLQAVYDPLIDYLGLVDCLIFPQKGKRPHPNECSGGDLDGDLYFVCWDENL 2477
PCLHPGD+RVL+AVY+ ++ GLVDCL+FPQKG+RPHPNECSGGDLDGD +F+ WD++L
Sbjct: 785 PCLHPGDVRVLEAVYEAELEDKGLVDCLVFPQKGERPHPNECSGGDLDGDQFFISWDKDL 844
Query: 2478 IPPETDAPMDYTPTRPRIMDHDVKLEEIQKYFVNYMINDNLGAISTTHLVYADSEPSKAR 2657
IP +TDAPMDYT +RPRIMDH+V LEEIQK+FV+YMIND LGAIST HLV+AD EP KAR
Sbjct: 845 IPCQTDAPMDYTGSRPRIMDHEVTLEEIQKFFVDYMINDTLGAISTAHLVHADREPDKAR 904
Query: 2658 CSKCLELANLHSMAVDFAKTGAPAEMPRALRPKIFPDFMERFEKPMFNSPGVIGKLYRAA 2837
KCLELA LHSMAVDFAKTGAPAEMPR+L+P+ FPDFM+R +KPM+ S GV+GKLYRA
Sbjct: 905 SEKCLELATLHSMAVDFAKTGAPAEMPRSLKPREFPDFMQRVDKPMYASLGVLGKLYRAT 964
Query: 2838 SSYHEDLNSETITS----QWVYDYDLLVXXXXXXXXXXXXYYSRYAEKLGSLMNYYGAEH 3005
+ S+ + S + +YD+DL V + Y EK+ LMNYY E
Sbjct: 965 INSTVQERSKFVWSKKMAEALYDHDLEVNGFEAFLSTAQTHKDMYEEKMSFLMNYYEVES 1024
Query: 3006 EDEILTGNLRNKSAYLQKDRKRYGEMKDRMLIGVKNLKEEVDGWFKCSCPEKDLFKMASA 3185
EDEILTGN+RNK+ +LQ+D +RYG+MKDR+L+ +KNL+ E F+ SC + ++ASA
Sbjct: 1025 EDEILTGNMRNKATFLQRDNRRYGDMKDRILLSMKNLQREARERFENSCKVGEHQRLASA 1084
Query: 3186 WYQVTYHPDYRPET--RFLSFPWIVSDVLLRIKAARARKS*MSWQVCVHMY 3332
WY VTYHP+Y E+ LSFPWIV D+LL+IK+ +R+ V H+Y
Sbjct: 1085 WYHVTYHPNYCQESMKSCLSFPWIVGDILLKIKSVNSREIQREQPVFSHVY 1135
>ref|XP_004298927.1| PREDICTED: RNA-dependent RNA polymerase 2-like [Fragaria vesca subsp.
vesca]
Length = 1136
Score = 1178 bits (3048), Expect = 0.0
Identities = 602/1112 (54%), Positives = 783/1112 (70%), Gaps = 18/1112 (1%)
Frame = +3
Query: 18 RATLHVSNIPHTAVAAELFDYFDASVG--SVYACKIATARRNWKSKGFGRVQFDTFAAAE 191
R T+ V+NIP T A EL + ++++G SV+A +I + +NWKS+G+GR+QF
Sbjct: 9 RPTVRVTNIPCTITATELLHFLESALGPDSVFAVEIVSDHKNWKSRGYGRIQFTALRHKA 68
Query: 192 RARLLDDEGRLPLFQHARLTVSPSHNDIVVRASEGQNRLEAAALHAGVLVGEGHMEIFEA 371
RA+ L L F+ L + +H+DI+ R + ++RL + LHAG +V + M + E+
Sbjct: 69 RAQSLSSSADL-FFKSHNLRLFEAHDDIIPRPLDPRHRLNSTVLHAGFVVNDETMSVLES 127
Query: 372 WEQVRVEIMPERKKLELFVDYGGEKYKLEVLFGDILESSSCCLDGRE--SILLQLQYAPR 545
WE VR +MPERK++E +V G+ YK+E+ F +I+ES CCL G + ++ L+L++ P+
Sbjct: 128 WEGVRAWVMPERKRVEFWVWRVGDCYKMEIAFENIVESVGCCLGGDKVNALRLKLKFGPK 187
Query: 546 CFVRIHG---LEKESNDRFRVCREDIQFLWVRTTDFSPNGSIGKSFYYCLQLSDGLSCAE 716
F ++ G K S DR+ VC+ED +LWVR TDFS SIG S +C ++ + ++ A
Sbjct: 188 IFRQLSGPNVASKFSADRYHVCKEDFDYLWVRCTDFSEMKSIGHSTAFCWEIQEDVAAAG 247
Query: 717 ILRKLP-FSRALGELIXXXXXXXXXXXXXX--FNCLGDCSVPYEILYQINSLVHMQKITF 887
+ P F + + +L+ C D PYEIL+Q+N LVH QKI+
Sbjct: 248 VFTTFPSFRKDVVDLMFEDGGDCLLVSETVPLVKCEADMKFPYEILFQLNVLVHAQKISL 307
Query: 888 RQVTIDLFDILKGLPSDVAIKILMKMHKLVSTCYDPVQFIKDELSRIKRSSTSPFSKSN- 1064
V DL + GL D A +L K+ KL +TCYDP+ F+K +L ++R+S S
Sbjct: 308 AAVGSDLIEFFGGLSMDTANVLLEKLQKLKTTCYDPLSFVKVQLQLLERNSKKRLSPHQR 367
Query: 1065 -IAQNMMSCYRVLVTPSRIYCLGPELEKSNYVVKHFSAHASDFLRVTFVDEDWSKLPSDA 1241
+ N+MSC+RVL+TPS+IYCLGPELEKSNYVVK+F+ +ASDF+RVTFV+EDW KLP +A
Sbjct: 368 LMEHNVMSCHRVLITPSKIYCLGPELEKSNYVVKNFAQYASDFMRVTFVEEDWGKLPVNA 427
Query: 1242 ISAKIDSGVFSEPFRTAIYTRILSILRDGLPICSKKFEFLAFSASQLRSNSVWMFASNDN 1421
+S I+ G F++PFRT IY RILSILRDG+ I K+FEFLAFSASQLRSNSVWMFASND+
Sbjct: 428 LSTSIEQGFFAKPFRTGIYQRILSILRDGIVIGDKRFEFLAFSASQLRSNSVWMFASNDS 487
Query: 1422 LTAETIRKWMGHFNGIRSVSKCAARMGQLFSSSMQTMNXXXXXXXXXXXXEITTEDGKKY 1601
+ AE IR WMG FN IRSVSKCAARMGQLFSSS QT+ E TT DG Y
Sbjct: 488 VKAEDIRDWMGCFNKIRSVSKCAARMGQLFSSSTQTLTVPQKDVELIPDIETTT-DGVSY 546
Query: 1602 CFSDGIGKISLPFARQIAQKCGLSNTPSAFQIRYGGYKGVIVSDRKSFWKLSLRRSMLKF 1781
CFSDGIGKISL FARQ+AQKCGL++TPSAFQIRYGGYKGVI DR SF KLSLR SMLKF
Sbjct: 547 CFSDGIGKISLSFARQVAQKCGLNDTPSAFQIRYGGYKGVIAVDRNSFRKLSLRSSMLKF 606
Query: 1782 ESANTMLSVTKWSEYQPCFLNREIVCLLSTLGVKDEIFESMQHDQMQLLDKMLTDTEIAL 1961
+S N ML+VTKWS PCFLNREI+ L+STLGV+DE FE++Q +Q+ LL +M D +AL
Sbjct: 607 DSDNRMLNVTKWSSSMPCFLNREIITLMSTLGVEDEAFEALQQEQLDLLGRMRKDRNVAL 666
Query: 1962 RVLDTLSGPDIRTA-VKMLIQGYKPNSEPYLLMMLKAHREYQLLDIRSKCRIFVPKGRVL 2138
L+ LSG D VK+L+QGY+PN EPYL MML+AH E+ L D++S+CR++VPKGR+L
Sbjct: 667 SSLEKLSGADSNNILVKLLLQGYEPNLEPYLSMMLQAHYEHHLADLKSRCRMYVPKGRIL 726
Query: 2139 IGCLDETSVLDYGQVYIKVTMTKEELQKENTNFIKNADQITATIVGKVLVTKNPCLHPGD 2318
+GCLDET L+YGQVY+++TMTK E + + +F + D+ T + GKV+VTKNPCLHPGD
Sbjct: 727 VGCLDETGTLNYGQVYLRITMTKAEQEMGHQSFFQRVDEATCIVTGKVVVTKNPCLHPGD 786
Query: 2319 IRVLQAVYDPLIDYLGLVDCLIFPQKGKRPHPNECSGGDLDGDLYFVCWDENLIPPETDA 2498
IRVL+AVYD ++ +VDC++FPQKG+RPHPNECSGGDLDGDL+F+ WD++LIPP T
Sbjct: 787 IRVLEAVYDVGLEEKNMVDCILFPQKGERPHPNECSGGDLDGDLFFISWDKSLIPPTTVP 846
Query: 2499 PMDYTPTRPRIMDHDVKLEEIQKYFVNYMINDNLGAISTTHLVYADSEPSKARCSKCLEL 2678
PMDY+ RPR MDHDV LEEIQK+FV+YMINDNLGAIST HLV++D EP KA KCLEL
Sbjct: 847 PMDYSARRPRNMDHDVTLEEIQKFFVDYMINDNLGAISTAHLVHSDHEPEKAMSKKCLEL 906
Query: 2679 ANLHSMAVDFAKTGAPAEMPRALRPKIFPDFMERFEKPMFNSPGVIGKLYRAASSYHEDL 2858
A+LHSMAVDFAKTGAPAE+ L+PK FPDFMER E+PM+ S G +GKLYRA S
Sbjct: 907 ADLHSMAVDFAKTGAPAELSWILKPKEFPDFMERVERPMYISNGALGKLYRAIRSSVVQE 966
Query: 2859 NSETITSQW----VYDYDLLVXXXXXXXXXXXXYYSRYAEKLGSLMNYYGAEHEDEILTG 3026
+ + SQ YD +L V + +Y EK+ SLMNYY A EDEILTG
Sbjct: 967 QTIVVWSQQRAEEAYDRELEVQGFESFLEMAESHRDKYIEKMRSLMNYYEATTEDEILTG 1026
Query: 3027 NLRNKSAYLQKDRKRYGEMKDRMLIGVKNLKEEVDGWFKCSCPEKDLFKMASAWYQVTYH 3206
NLRN++AYLQ+D +RY ++KDR+L+ +K L++E GWF+ SC + ++ASAWY VTY+
Sbjct: 1027 NLRNRAAYLQRDNRRYFDLKDRILLSLKTLQKEAKGWFESSCKVSEQQRLASAWYHVTYN 1086
Query: 3207 PDY-RPETRFLSFPWIVSDVLLRIKAARARKS 3299
Y + + LSFPWIV D+LL IK+ +R+S
Sbjct: 1087 LAYFQEDMNCLSFPWIVGDILLNIKSLNSRRS 1118
>ref|XP_004508850.1| PREDICTED: RNA-dependent RNA polymerase 2-like [Cicer arietinum]
Length = 1122
Score = 1177 bits (3046), Expect = 0.0
Identities = 617/1113 (55%), Positives = 781/1113 (70%), Gaps = 23/1113 (2%)
Frame = +3
Query: 24 TLHVSNIPHTAVAAELFDYFDASVG--SVYACKIATARRNWKSKGFGRVQFDTFAAAERA 197
T+ V NIP +A A +L + +++VG SV+A +I + NWKS+G GRVQF+TF A +A
Sbjct: 10 TVRVFNIPQSATAKDLLHFLESTVGPSSVFALEIFSDHSNWKSRGSGRVQFETFEAKSKA 69
Query: 198 RLLDDEGRLPLFQHARLTVSPSHNDIVVRASEGQNRLEAAALHAGVLVGEGHMEIFEAWE 377
L +L LF L ++ S +DIV R NRL LHAG +G M + ++WE
Sbjct: 70 LSLSSNDKL-LFNSHFLRLAASSDDIVPRPPLPCNRLHNGTLHAGFPLGPDRMSVIQSWE 128
Query: 378 QVRVEIMPERKKLELFVDYGGEKYKLEVLFGDILESSSCCLDGRE--SILLQLQYAPRCF 551
V+ +MPER +L+ +V + + +KLE+ F +ILE DG + ++LL+L+Y PR +
Sbjct: 129 GVKGWVMPERNRLDFWVTHHDQCFKLEIPFENILECDGFSSDGSKPNALLLKLKYGPRIY 188
Query: 552 VRIHGLE---KESNDRFRVCREDIQFLWVRTTDFSPNGSIGKSFYYCLQLSDGLSCAEIL 722
R+ G K DR+R C+ED F+WVRTTDFS SIG S +C ++ + S +++
Sbjct: 189 QRMEGPNVSAKFKADRYRFCKEDFAFMWVRTTDFSRLKSIGHSTSFCWEIEEESSDSDVF 248
Query: 723 RKLPFSRALGE---LIXXXXXXXXXXXXXXFNCLGDCSVPYEILYQINSLVHMQKITFRQ 893
R P R + L C D +PYE L+Q+NSLVH QKI+
Sbjct: 249 RSFPLYRENLKDLSLEDGEEFCSPTETVPLVKCRLDTKLPYEALFQLNSLVHTQKISLAS 308
Query: 894 VTIDLFDILKGLPSDVAIKILMKMHKLVSTCYDPVQFIKDELS--RIKRSSTSPFSKSNI 1067
V +L D++ L + I K+HK+ STCY+P++F+K +L IK+ S P S+ +
Sbjct: 309 VDDELIDLIASLDDETKAVIFQKLHKMSSTCYEPLRFVKTQLHVLSIKKKSLRPSSQKRL 368
Query: 1068 AQN-MMSCYRVLVTPSRIYCLGPELEKSNYVVKHFSAHASDFLRVTFVDEDWSKLPSDAI 1244
A N +MSC+R L+TPS+IYCLGPELE SN+VVKHF+++ASDF+R+TFV+EDWSKLP +A+
Sbjct: 369 ADNNIMSCHRALITPSKIYCLGPELETSNHVVKHFASYASDFMRITFVEEDWSKLPINAV 428
Query: 1245 SAKIDSGVFSEPFRTAIYTRILSILRDGLPICSKKFEFLAFSASQLRSNSVWMFASNDNL 1424
S + G+F++PFRT IY R+L+ILRDG+ I SK+FEFLAFSASQLRSNSVW+FASND +
Sbjct: 429 STSLQKGIFAKPFRTDIYKRVLTILRDGIVIGSKRFEFLAFSASQLRSNSVWLFASNDKV 488
Query: 1425 TAETIRKWMGHFNGIRSVSKCAARMGQLFSSSMQTMNXXXXXXXXXXXXEITTEDGKKYC 1604
AE IR+WMG F IRSVSKCAARMGQLFSSS QT E+T+ DG YC
Sbjct: 489 KAEDIREWMGSFTNIRSVSKCAARMGQLFSSSKQTFEMAPQDVDIIPDIELTS-DGINYC 547
Query: 1605 FSDGIGKISLPFARQIAQKCGL--SNTPSAFQIRYGGYKGVIVSDRKSFWKLSLRRSMLK 1778
FSDGIGKISL FA+Q+AQK L S PSAFQIRYGGYKGVI DR SF KLS+R SMLK
Sbjct: 548 FSDGIGKISLSFAKQLAQKLKLDQSRIPSAFQIRYGGYKGVIAVDRHSFRKLSMRNSMLK 607
Query: 1779 FESANTMLSVTKWSEYQPCFLNREIVCLLSTLGVKDEIFESMQHDQMQLLDKMLTDTEIA 1958
FES N ML VTKWSE PCFLNREI+ LLSTLGVKDE +MQ +Q+QLL KMLTD E A
Sbjct: 608 FESKNRMLCVTKWSESMPCFLNREIISLLSTLGVKDEALLAMQEEQLQLLGKMLTDREAA 667
Query: 1959 LRVLDTLSGPDIRTA-VKMLIQGYKPNSEPYLLMMLKAHREYQLLDIRSKCRIFVPKGRV 2135
L VL++LSG D R+ VKML Y+PNSEPYL MMLKAH YQL D++S+CRIFVPKGRV
Sbjct: 668 LDVLESLSGADSRSILVKMLNGFYEPNSEPYLSMMLKAHYAYQLSDLKSRCRIFVPKGRV 727
Query: 2136 LIGCLDETSVLDYGQVYIKVTMTK--EELQKENTNFIKNADQITATIVGKVLVTKNPCLH 2309
LIGCLDET +L+YGQV++++T+TK E++ EN + + D T IVGKV+VTKNPCLH
Sbjct: 728 LIGCLDETGILNYGQVFVRITVTKTKEKIGDENLQNV-DGDDSTRIIVGKVVVTKNPCLH 786
Query: 2310 PGDIRVLQAVYDPLIDYLGLVDCLIFPQKGKRPHPNECSGGDLDGDLYFVCWDENLIPPE 2489
PGDIRVL A+Y+ ++ GL DCL+FPQKG RPHPNECSGGDLDGDL+F+ WD++LIPP+
Sbjct: 787 PGDIRVLDAIYNEELEEKGLRDCLVFPQKGPRPHPNECSGGDLDGDLFFISWDKDLIPPQ 846
Query: 2490 TDAPMDYTPTRPRIMDHDVKLEEIQKYFVNYMINDNLGAISTTHLVYADSEPSKARCSKC 2669
TD PMDYT RPRIMDH V LEEI ++FV+YMIND LGAIST HLV+AD EP KAR KC
Sbjct: 847 TDNPMDYTGRRPRIMDHKVTLEEIHQFFVDYMINDTLGAISTAHLVHADREPEKARSRKC 906
Query: 2670 LELANLHSMAVDFAKTGAPAEMPRALRPKIFPDFMERFEKPMFNSPGVIGKLYRAASSYH 2849
LELA LHSMAVDFAKTGAPAEMPRAL+P+ FPDFMERF+KPM+ S GV+GKLYRA
Sbjct: 907 LELAELHSMAVDFAKTGAPAEMPRALKPREFPDFMERFDKPMYISNGVLGKLYRALVEST 966
Query: 2850 EDLNSETITS----QWVYDYDLLVXXXXXXXXXXXXYYSRYAEKLGSLMNYYGAEHEDEI 3017
+ S + S + YD+ L V + YA+K+ SLM++Y AE EDE+
Sbjct: 967 TQVRSNIVLSEKFAEEAYDHQLEVNGFEAFLETASSHKEMYAQKMSSLMSFYDAETEDEM 1026
Query: 3018 LTGNLRNKSAYLQKDRKRYGEMKDRMLIGVKNLKEEVDGWFKCSCPEKDLFKMASAWYQV 3197
LTGNL+N+++YLQ+D +RYG+MKDR+LI VK+L+ E WF+ C + MASAWY V
Sbjct: 1027 LTGNLQNRASYLQRDNRRYGDMKDRILISVKDLQREAKEWFESDCQPHEYQLMASAWYHV 1086
Query: 3198 TYHPDYRPE-TRFLSFPWIVSDVLLRIKAARAR 3293
TYHP Y E + FLSFPWIV D+LL IK+ +
Sbjct: 1087 TYHPKYSHESSTFLSFPWIVGDILLHIKSVNTK 1119
>ref|XP_002321582.1| hypothetical protein POPTR_0015s08500g [Populus trichocarpa]
gi|222868578|gb|EEF05709.1| hypothetical protein
POPTR_0015s08500g [Populus trichocarpa]
Length = 1110
Score = 1176 bits (3042), Expect = 0.0
Identities = 615/1114 (55%), Positives = 778/1114 (69%), Gaps = 20/1114 (1%)
Frame = +3
Query: 18 RATLHVSNIPHTAVAAELFDYFDASVG--SVYACKIATARRNWKSKGFGRVQFDTFAAAE 191
R ++ V+NIP T A E+ Y A +G SV+A +I+T R+NW S+GFGRVQF +
Sbjct: 7 RPSVRVTNIPQTITAKEILQYLVAQLGKDSVFAIEISTVRKNWNSRGFGRVQFSSLEVKH 66
Query: 192 RARLLDDEGRLPLFQHARLTVSPSHNDIVVRASEGQNRLEAAALHAGVLVGEGHMEIFEA 371
A L + +L L + L +S +++DI+ R + QNR+E L+ G + E + + E
Sbjct: 67 EALSLSLKNKLVL-KSQNLKLSETYDDIIPRPVKDQNRMENGVLYVGFMKKETTLCVLEY 125
Query: 372 WEQVRVEIMPERKKLELFVDYGGE-KYKLEVLFGDILESSSCCLDGRE--SILLQLQYAP 542
WE VR MPER+++E ++ G E +YKL V F DILE+ LDG + +++L+L+Y P
Sbjct: 126 WEGVRGWFMPERRRIEFWIRVGQEFRYKLVVEFEDILEAVGYPLDGDKVNAVVLKLRYGP 185
Query: 543 RCFVRIHG---LEKESNDRFRVCREDIQFLWVRTTDFSPNGSIGKSFYYCLQLSDGLSCA 713
R + +I G K S +R+ C+ED FLWVRTTD S SIG+S +C ++ +GL +
Sbjct: 186 RIYQKISGPGIASKFSTNRYFYCKEDFDFLWVRTTDISAIKSIGQSTSFCWEIGEGLEAS 245
Query: 714 EILRKLPFSRA---LGELIXXXXXXXXXXXXXXFNCLGDCSVPYEILYQINSLVHMQKIT 884
+ R P+ + +L C G + YE+L+Q+NSLVH QKI+
Sbjct: 246 DTFRNFPYYQEDMNRLDLEDGEEFCSASETVPLIRC-GSDKLAYEVLFQLNSLVHTQKIS 304
Query: 885 FRQVTIDLFDILKGLPSDVAIKILMKMHKLVSTCYDPVQFIKDELSRIKRSSTSPFSKSN 1064
V DL IL+ L + AI IL K+HKL TCYDP+ F+K L R S S KS
Sbjct: 305 LAAVDSDLIKILRNLTVNTAIIILQKLHKLKMTCYDPLSFVKQSL----RESLSSPPKSL 360
Query: 1065 IAQNMMSCYRVLVTPSRIYCLGPELEKSNYVVKHFSAHASDFLRVTFVDEDWSKLPSDAI 1244
N+MSC+R L+TPS+I+CLGPE E SNYVVKHF+ +ASDF+RVTFV+EDWSKLP++AI
Sbjct: 361 TENNIMSCHRALITPSKIFCLGPEYETSNYVVKHFAQYASDFIRVTFVEEDWSKLPANAI 420
Query: 1245 SAKIDSGVFSEPFRTAIYTRILSILRDGLPICSKKFEFLAFSASQLRSNSVWMFASNDNL 1424
S I G+F++PFRT IY RILSILRDG I +K+FEFLAFSASQLRSNSVWMFASN+ +
Sbjct: 421 STSIQRGIFAKPFRTGIYHRILSILRDGFVIGAKRFEFLAFSASQLRSNSVWMFASNNGV 480
Query: 1425 TAETIRKWMGHFNGIRSVSKCAARMGQLFSSSMQTMNXXXXXXXXXXXXEITTEDGKKYC 1604
AE IRKWMG F+ IRSVSKCAARMGQLFSSS+QT E+TT DG YC
Sbjct: 481 KAEDIRKWMGCFDKIRSVSKCAARMGQLFSSSLQTFVVPVQDVEIIPDIEVTT-DGIDYC 539
Query: 1605 FSDGIGKISLPFARQIAQKCGLSNTPSAFQIRYGGYKGVIVSDRKSFWKLSLRRSMLKFE 1784
FSDGIGKISL FA+Q+A KCGLS+TPSAFQIRYGGYKGV+ DR SF KLSLR SMLKF+
Sbjct: 540 FSDGIGKISLSFAKQVAHKCGLSHTPSAFQIRYGGYKGVVAVDRNSFRKLSLRSSMLKFD 599
Query: 1785 SANTMLSVTKWSEYQPCFLNREIVCLLSTLGVKDEIFESMQHDQMQLLDKMLTDTEIALR 1964
S N ML+VTKWSE PC+LNREI+ LLSTLGV DEIF+++Q Q+ L KMLT+ E AL
Sbjct: 600 SENRMLNVTKWSESMPCYLNREIISLLSTLGVADEIFQALQQKQLYRLRKMLTNKESALD 659
Query: 1965 VLDTLSGPDIRTA-VKMLIQGYKPNSEPYLLMMLKAHREYQLLDIRSKCRIFVPKGRVLI 2141
VL+ L+ D + V+ML+QGY+PN EPYL MML+A+ E L+++RS+CRIFVPKGR+LI
Sbjct: 660 VLENLAWADSKNILVQMLLQGYEPNVEPYLSMMLQAYHENSLMELRSRCRIFVPKGRILI 719
Query: 2142 GCLDETSVLDYGQVYIKVTMTKEELQKENTNFIKNADQITATIVGKVLVTKNPCLHPGDI 2321
GCLDE+ +LDYGQVY+++TMTK ELQ + +F + D+ T+TI+G+V VTKNPCLHPGDI
Sbjct: 720 GCLDESGILDYGQVYVRITMTKAELQCCDQSFFRKVDESTSTIIGEVAVTKNPCLHPGDI 779
Query: 2322 RVLQAVYDPLIDYLGLVDCLIFPQKGKRPHPNECSGGDLDGDLYFVCWDENLIPPETDAP 2501
RVL+AVYD ++ GLVDC+IFPQ G RPHPNECSGGDLDGD +F+ WDE L+P T+AP
Sbjct: 780 RVLEAVYDVELEEKGLVDCIIFPQNGGRPHPNECSGGDLDGDQFFISWDEGLLPCHTEAP 839
Query: 2502 MDYTPTRPRIMDHDVKLEEIQKYFVNYMINDNLGAISTTHLVYADSEPSKARCSKCLELA 2681
MDY R RIMDH+V LEEIQ++FV+YMIND LGAIST HLV+AD EP KAR KCL+LA
Sbjct: 840 MDYVGGRQRIMDHNVTLEEIQRFFVDYMINDTLGAISTAHLVHADCEPDKARSEKCLQLA 899
Query: 2682 NLHSMAVDFAKTGAPAEMPRALRPKIFPDFMERFEKPMFNSPGVIGKLYRAASSYHEDLN 2861
LHSMAVDFAKTGAPAEMP L+P+ FPDFMER EK M+ S GV+GKLYR H+
Sbjct: 900 TLHSMAVDFAKTGAPAEMPLYLKPREFPDFMERAEKQMYISDGVLGKLYR---DIHDSTR 956
Query: 2862 SETITSQW-------VYDYDLLVXXXXXXXXXXXXYYSRYAEKLGSLMNYYGAEHEDEIL 3020
E W YD DL V Y +Y EK+ +LM+YYGA+ EDEIL
Sbjct: 957 QERSNFMWSKKIAEATYDQDLEVKGFEDFLGIASIYKEKYMEKMSTLMDYYGAKTEDEIL 1016
Query: 3021 TGNLRNKSAYLQKDRKRYGEMKDRMLIGVKNLKEEVDGWFKCSCPEKDLFKMASAWYQVT 3200
TGNLR++ YLQ+D ++YG++KDR+L+ +KNLK+E WF+ SC + MASAWY VT
Sbjct: 1017 TGNLRHRPTYLQRDNRKYGDVKDRILVSLKNLKKEAKEWFESSCNPTEHQCMASAWYHVT 1076
Query: 3201 YHPDYRPE-TRFLSFPWIVSDVLLRIKAARARKS 3299
YHP Y E LSFPWIV D+LL IK+ +R +
Sbjct: 1077 YHPTYFHERMNCLSFPWIVGDILLNIKSLNSRNA 1110
>gb|EXC16034.1| RNA-dependent RNA polymerase 2 [Morus notabilis]
Length = 1115
Score = 1174 bits (3037), Expect = 0.0
Identities = 600/1109 (54%), Positives = 776/1109 (69%), Gaps = 15/1109 (1%)
Frame = +3
Query: 18 RATLHVSNIPHTAVAAELFDYFDASVG--SVYACKIATARRNWKSKGFGRVQFDTFAAAE 191
R T+ V+NIP TA+A +L + ++ +G SV+A +I+T R+NWKS+GFGRVQF + AA
Sbjct: 7 RPTVRVTNIPQTAIATDLQTFLESKLGPNSVFAVEISTERKNWKSRGFGRVQFTSLAAKL 66
Query: 192 RARLLDDEGRLPLFQHARLTVSPSHNDIVVRASEGQNRLEAAALHAGVLVGEGHMEIFEA 371
A+ L +F+ L + +H+DIV + + RLE LHAG ++ + M + ++
Sbjct: 67 VAQALSLSNNF-VFRSRNLGIFDTHDDIVALPVDPKLRLEDGVLHAGFMIRDDRMAVLQS 125
Query: 372 WEQVRVEIMPERKKLELFVDYGGEKYKLEVLFGDILESSSCCLDGRE--SILLQLQYAPR 545
WE VR MPER ++E +V + YKLEV F D+LE+ CLD + + LLQL+Y P+
Sbjct: 126 WEGVRAWAMPERNRVEFWVWSDEDCYKLEVAFEDVLETVGYCLDDGKLYAFLLQLKYGPK 185
Query: 546 CFVRIHGLEKESNDRFRVCREDIQFLWVRTTDFSPNGSIGKSFYYCLQLSDGLSCAEILR 725
+ RI K DR+ +C+ED +F WVRTTDF + SIG S C + ++ R
Sbjct: 186 IYKRISRPSKFVADRYHICKEDFEFHWVRTTDFLESKSIGHSTSLCWDAKEDFLSSDTFR 245
Query: 726 KLPFSR-ALGELIXXXXXXXXXXXXXX--FNCLGDCSVPYEILYQINSLVHMQKITFRQV 896
P+ R + +LI C ++ YEIL+Q+NSLVHMQKI+F
Sbjct: 246 SFPYYREGMKDLILEDSDEFCSVSETVPLIKCPAGSNLSYEILFQLNSLVHMQKISFASA 305
Query: 897 TIDLFDILKGLPSDVAIKILMKMHKLVSTCYDPVQFIKDELSRIKRSSTSPFS--KSNIA 1070
DL + L D A ++ K+HKL STCYDP+ K +++++ +P S K
Sbjct: 306 DADLIEYFGSLNIDTANAVIQKLHKLKSTCYDPLSLAKTYAHILEKNTKNPSSAIKRLTE 365
Query: 1071 QNMMSCYRVLVTPSRIYCLGPELEKSNYVVKHFSAHASDFLRVTFVDEDWSKLPSDAISA 1250
++MSC+R L+TPS+IYC+GPELE SNYVVK+F+A+ASDFLRVTFV+EDW KL +S
Sbjct: 366 NSLMSCHRALITPSKIYCMGPELETSNYVVKNFAAYASDFLRVTFVEEDWGKLHPHVVST 425
Query: 1251 KIDSGVFSEPFRTAIYTRILSILRDGLPICSKKFEFLAFSASQLRSNSVWMFASNDNLTA 1430
I+ G+F++P+RT IY RILSILR+G+ I +K++EFLAFSASQLRS++VWMFASNDN+ A
Sbjct: 426 SIEQGIFAKPYRTGIYDRILSILRNGILIGAKRYEFLAFSASQLRSSAVWMFASNDNVKA 485
Query: 1431 ETIRKWMGHFNGIRSVSKCAARMGQLFSSSMQTMNXXXXXXXXXXXXEITTEDGKKYCFS 1610
E IR+WMG FN IRSVSKCAARMGQLFSSS QT+ E+TT DG YCFS
Sbjct: 486 EDIREWMGCFNKIRSVSKCAARMGQLFSSSRQTLIVPTQDLEIIPDVEVTT-DGIDYCFS 544
Query: 1611 DGIGKISLPFARQIAQKCGLSNTPSAFQIRYGGYKGVIVSDRKSFWKLSLRRSMLKFESA 1790
DGIGKIS FARQ+AQKCGL TPSAFQIRYGGYKGVI +R SF KLSLR SMLKFES+
Sbjct: 545 DGIGKISSSFARQVAQKCGLKETPSAFQIRYGGYKGVIAVNRSSFRKLSLRSSMLKFESS 604
Query: 1791 NTMLSVTKWSEYQPCFLNREIVCLLSTLGVKDEIFESMQHDQMQLLDKMLTDTEIALRVL 1970
N ML+VTKWS PC+LNREIV LLS+LGVKDE F ++ +Q+ LL KM T+ E AL VL
Sbjct: 605 NRMLNVTKWSGSMPCYLNREIVSLLSSLGVKDESFLALLREQLLLLGKMRTNREAALNVL 664
Query: 1971 DTLSGPDIRTA-VKMLIQGYKPNSEPYLLMMLKAHREYQLLDIRSKCRIFVPKGRVLIGC 2147
+ L+G D VKML+QGY+PN+EPYL MM++++ E QL D++++CRIFVPKG+VLIGC
Sbjct: 665 ENLNGSDSSNILVKMLLQGYEPNAEPYLSMMIQSYYENQLSDLKTRCRIFVPKGKVLIGC 724
Query: 2148 LDETSVLDYGQVYIKVTMTKEELQKENTNFIKNADQITATIVGKVLVTKNPCLHPGDIRV 2327
LDET +L+YGQVY+++TM K EL+ N +F + D T+ +VGKV+VTKNPCLHPGD+RV
Sbjct: 725 LDETGILEYGQVYVRLTMKKAELEAGNQSFFRKVDDETSIVVGKVVVTKNPCLHPGDVRV 784
Query: 2328 LQAVYDPLIDYLGLVDCLIFPQKGKRPHPNECSGGDLDGDLYFVCWDENLIPPETDAPMD 2507
L+AVYD ++ GLVDCL+FPQKG+RPHPNECSGGDLDGDL+F+ WD NLIPP T APMD
Sbjct: 785 LEAVYDAKLEEEGLVDCLVFPQKGERPHPNECSGGDLDGDLFFISWDTNLIPPRTTAPMD 844
Query: 2508 YTPTRPRIMDHDVKLEEIQKYFVNYMINDNLGAISTTHLVYADSEPSKARCSKCLELANL 2687
Y RPRIMDHDV LEEIQK+FV+YMIND LG IST HL++AD EP KA CL+LA L
Sbjct: 845 YIGRRPRIMDHDVTLEEIQKFFVDYMINDTLGGISTAHLIHADREPEKAFSENCLQLATL 904
Query: 2688 HSMAVDFAKTGAPAEMPRALRPKIFPDFMERFEKPMFNSPGVIGKLYRAASSYHEDLNSE 2867
HSMAVDFAKTGAPAEMPRALRP+ +PDFMER ++PM+ S G +GKLYRA +S
Sbjct: 905 HSMAVDFAKTGAPAEMPRALRPRDYPDFMERLDRPMYVSNGALGKLYRATVESESQGSSN 964
Query: 2868 TI----TSQWVYDYDLLVXXXXXXXXXXXXYYSRYAEKLGSLMNYYGAEHEDEILTGNLR 3035
+ T++ YD DL V + Y +K+ +MNYY E EDE+LTGNLR
Sbjct: 965 LVWSEKTAEAAYDRDLEVNGFEEFIALAESHRDMYIDKMNGIMNYYELESEDEVLTGNLR 1024
Query: 3036 NKSAYLQKDRKRYGEMKDRMLIGVKNLKEEVDGWFKCSCPEKDLFKMASAWYQVTYHPD- 3212
++AYLQ+D +RY E+KDR+L+ VK+L+ E GWF+ SC + KMASAWY VTYHP+
Sbjct: 1025 KRAAYLQRDNRRYFEVKDRILLAVKSLQREAKGWFEGSCEAMEQQKMASAWYHVTYHPNY 1084
Query: 3213 YRPETRFLSFPWIVSDVLLRIKAARARKS 3299
Y+ LSFPWI D+LL IK+ ++++
Sbjct: 1085 YQKSINCLSFPWIKGDILLNIKSINSQRN 1113
>ref|XP_006476748.1| PREDICTED: RNA-dependent RNA polymerase 2-like [Citrus sinensis]
Length = 1131
Score = 1174 bits (3036), Expect = 0.0
Identities = 613/1132 (54%), Positives = 790/1132 (69%), Gaps = 37/1132 (3%)
Frame = +3
Query: 15 VRATLHVSNIPHTAVAAELFDYFDASVG--SVYACKIATARRNWKSKGFGRVQFDTFAAA 188
V AT+ VSNIP TA+A +L + ++ +G SV+A +I T R NWKS+G GRVQF +
Sbjct: 2 VLATVWVSNIPQTAIAKDLLLFLESKLGKNSVFALEIITDRSNWKSRGIGRVQFTSLDFK 61
Query: 189 ERARLLDDEGRLPLFQHARLTVSPSHNDIVVRASEGQNRLEAAALHAGVLVGEGHMEIFE 368
+A+ L +L +F L +S +H+DIV R + Q+R+E LH GV+ E + + +
Sbjct: 62 SKAQNLSLNDKL-VFNSQNLKISETHSDIVPRPVKAQHRVEDGVLHVGVMCKEERLRVLQ 120
Query: 369 AWEQVRVEIMPERKKLELFV--DYGGEK---------------YKLEVLFGDILESSSCC 497
+E VR ++P+R++LE +V + GE +K+E+LF D+LE+
Sbjct: 121 TFEGVRGWLLPDRRRLEFWVWPKHNGEWQKGIQECQSDSSDCCFKVEILFEDVLETVGFS 180
Query: 498 LDGRES---ILLQLQYAPRCFVRIHG---LEKESNDRFRVCREDIQFLWVRTTDFSPNGS 659
LD + IL +L+Y P+ + ++ G K +DR+ +C+ED F WVRTTDFS S
Sbjct: 181 LDEGATVNGILFKLKYGPKIYQKVSGPHVASKFPSDRYHICKEDFDFFWVRTTDFSVTKS 240
Query: 660 IGKSFYYCLQLSDGLSCAEILRKLPFSRA-LGELIXXXXXXXXXXXXXX--FNCLGDCSV 830
IG S + ++ +GL ++I PF + +LI C ++
Sbjct: 241 IGCSTSFFWEIKNGLLASDISNIFPFYKEDKTDLILEEGEEFCTTSEIVPLVKCRPGFNL 300
Query: 831 PYEILYQINSLVHMQKITFRQVTIDLFDILKGLPSDVAIKILMKMHKLVSTCYDPVQFIK 1010
+E+L+Q+NSLVH QK++ +L IL GL + A+ +L K+HKL S CYDPV F+K
Sbjct: 301 SHEVLFQLNSLVHNQKVSLVAADAELIQILNGLSMETALMVLQKLHKLKSICYDPVSFVK 360
Query: 1011 DELSRIKRSSTS-PFS--KSNIAQNMMSCYRVLVTPSRIYCLGPELEKSNYVVKHFSAHA 1181
+L + R+ S P S K I N+MSCYR LVTP +IYCLGPELE SNYVVK+F+ +A
Sbjct: 361 TQLHVLGRNCKSIPLSSHKRLIDHNVMSCYRALVTPMKIYCLGPELETSNYVVKNFAKYA 420
Query: 1182 SDFLRVTFVDEDWSKLPSDAISAKIDSGVFSEPFRTAIYTRILSILRDGLPICSKKFEFL 1361
SDF+RVTFV+EDWSKLP++A+S I G+F++P+RT IY+RIL+IL+DG+ I K +EFL
Sbjct: 421 SDFMRVTFVEEDWSKLPANALSTSIQRGIFAKPYRTKIYSRILTILQDGIVIGDKHYEFL 480
Query: 1362 AFSASQLRSNSVWMFASNDNLTAETIRKWMGHFNGIRSVSKCAARMGQLFSSSMQTMNXX 1541
AFSASQLR+NSVWMFASND ++AE +R+WMG FN I SVSKCAARMGQLFSSS QT+
Sbjct: 481 AFSASQLRNNSVWMFASNDEVSAEDVREWMGCFNKIHSVSKCAARMGQLFSSSKQTLVVP 540
Query: 1542 XXXXXXXXXXEITTEDGKKYCFSDGIGKISLPFARQIAQKCGLSNTPSAFQIRYGGYKGV 1721
E+T+ DG YCFSDGIGKISL FARQ+AQKCGLS+TPSAFQIRYGGYKGV
Sbjct: 541 VQDVEMIPDVEVTS-DGNTYCFSDGIGKISLSFARQVAQKCGLSHTPSAFQIRYGGYKGV 599
Query: 1722 IVSDRKSFWKLSLRRSMLKFESANTMLSVTKWSEYQPCFLNREIVCLLSTLGVKDEIFES 1901
I DR SF KLSLRRSMLKFES N ML+VTKWSE PCFLNREI+ LLSTLGVKD++FE+
Sbjct: 600 IAVDRNSFRKLSLRRSMLKFESRNRMLNVTKWSESMPCFLNREIISLLSTLGVKDDVFEA 659
Query: 1902 MQHDQMQLLDKMLTDTEIALRVLDTLSGPDIRTA-VKMLIQGYKPNSEPYLLMMLKAHRE 2078
MQ Q+ LL KML + E AL VL L+G D + VKML+QGY+PN EPYL MML +H E
Sbjct: 660 MQQQQLILLGKMLINREAALDVLQKLNGVDSKNILVKMLLQGYEPNVEPYLSMMLLSHHE 719
Query: 2079 YQLLDIRSKCRIFVPKGRVLIGCLDETSVLDYGQVYIKVTMTKEELQKENTNFIKNADQI 2258
QL D++S+CRI+VPKGR+LIGC DET +L+YGQV+++VTMT+EEL+ ++ +F D
Sbjct: 720 NQLSDLKSRCRIYVPKGRLLIGCFDETGILNYGQVFVRVTMTREELESKDQSFFHRVDDK 779
Query: 2259 TATIVGKVLVTKNPCLHPGDIRVLQAVYDPLIDYLGLVDCLIFPQKGKRPHPNECSGGDL 2438
T+ + GKVLVTKNPCLHPGD+RVL+AVY+ ++ VDC+IFPQKG+RPHPNECSGGDL
Sbjct: 780 TSIVKGKVLVTKNPCLHPGDVRVLEAVYEMKLEEKDYVDCIIFPQKGERPHPNECSGGDL 839
Query: 2439 DGDLYFVCWDENLIPPETDAPMDYTPTRPRIMDHDVKLEEIQKYFVNYMINDNLGAISTT 2618
DGD++F+ WD +LIP ET+ PMDYT R RIMDHDV LEEI K+FV+YMIND LGAIST
Sbjct: 840 DGDIFFISWDNDLIPCETEPPMDYTGRRSRIMDHDVTLEEIHKFFVDYMINDTLGAISTA 899
Query: 2619 HLVYADSEPSKARCSKCLELANLHSMAVDFAKTGAPAEMPRALRPKIFPDFMERFEKPMF 2798
HLV+AD +P KAR SKCL LA LHSMAVDFAKTGAPAEMP AL+PK FPDFMER +KP +
Sbjct: 900 HLVHADRDPDKARSSKCLHLATLHSMAVDFAKTGAPAEMPLALKPKEFPDFMEREDKPRY 959
Query: 2799 NSPGVIGKLYRAASSYHEDLNSETITSQWV----YDYDLLVXXXXXXXXXXXXYYSRYAE 2966
S GV+GKLYRA + S I S+ + YD+DL V + Y E
Sbjct: 960 ISFGVLGKLYRATLDSIMQIRSNAIWSEKIAEASYDHDLEVDGFEAFLGVAESHKEMYEE 1019
Query: 2967 KLGSLMNYYGAEHEDEILTGNLRNKSAYLQKDRKRYGEMKDRMLIGVKNLKEEVDGWFKC 3146
++ +LMNYYGA EDEILTGNLRN+++YLQ+D +RYG+MKDR+L+ KNL+ E WF
Sbjct: 1020 EMNALMNYYGASTEDEILTGNLRNRASYLQRDNRRYGDMKDRILLSAKNLQNEAKEWFGS 1079
Query: 3147 SCPEKDLFKMASAWYQVTYHPDY-RPETRFLSFPWIVSDVLLRIKAARARKS 3299
SC E + ++ASAWY VTY P Y + LSFPWIV D+LL IK+ +RK+
Sbjct: 1080 SCKENEHPQLASAWYHVTYSPSYCKERMALLSFPWIVGDILLNIKSVNSRKA 1131
>ref|XP_003579930.1| PREDICTED: probable RNA-dependent RNA polymerase 2-like [Brachypodium
distachyon]
Length = 1140
Score = 1170 bits (3026), Expect = 0.0
Identities = 612/1107 (55%), Positives = 771/1107 (69%), Gaps = 15/1107 (1%)
Frame = +3
Query: 21 ATLHVSNIPHTAVAAELFDYFD---ASVGSVYACKIATARRNWKSKGFGRVQFDTFAAAE 191
AT+ VSNIP AVAAEL +FD A+VG+ +AC+I A R W+S+G G VQFD+ A A
Sbjct: 12 ATVRVSNIPRLAVAAELLAFFDSAVAAVGTTFACEIVAAHRGWQSRGHGTVQFDSAATAS 71
Query: 192 RARLLDDEGRLPLFQHARLTVSPSHNDIVVRASEGQNRLEAAALHAGVLVGEGHMEIFEA 371
A L GRLP F + L+VSP+ D++ RA R A L G V E +E+ E
Sbjct: 72 LAAELASSGRLPRFLGSPLSVSPAPADLLPRAPAPSLRASGARLLVGNRVAERELEMAET 131
Query: 372 WEQVRVEIMPERKKLELFVDYGGEKYKLEVLFGDILESSSCCLDGRESILLQLQYAPRCF 551
+ VRVE++P +++++L++ + +YKLEVLF DI C LDG +ILLQL YAPR
Sbjct: 132 LDGVRVEVIPGKRRVDLYLTHDSHRYKLEVLFEDIRNCFRCSLDGTSAILLQLTYAPRIH 191
Query: 552 VRIHG---LEKESNDRFRVCREDIQFLWVRTTDFSPNGSIGKSFYYCLQLSDGLSCAEIL 722
G + +DR C+ED +F WVR DF+PN S GK ++L + + IL
Sbjct: 192 TAFSGPAVYSRFKDDRLHACKEDAKFTWVRALDFTPNQSFGKCSTLVIKLDEDALMSYIL 251
Query: 723 RKLPFSRALGELIXXXXXXXXXXXXXX--FNCLGDCSVPYEILYQINSLVHMQKITFRQV 896
LPFS LGEL +C CSV YE+L+++NSLVHM KI + V
Sbjct: 252 NTLPFSGVLGELAISSMDVVGPSSKAVPLVDCPHGCSVSYEVLFRLNSLVHMGKIVAKHV 311
Query: 897 TIDLFDILKGLPSDVAIKILMKMHKLVSTCYDPVQFIKDELSRIKRSSTSPFSKSNIAQN 1076
LF L+ +P ++ +I KM KL STCY+P+QFI+ EL + S SK
Sbjct: 312 NAKLFAFLEQVPLHISRRIFEKMSKLESTCYEPLQFIESELKLTHNALLS--SKREGEGK 369
Query: 1077 MMSCYRVLVTPSRIYCLGPELEKSNYVVKHFSAHASDFLRVTFVDEDWSKLPSDAISAKI 1256
+M CYR+ +TPS+IYCLGPE E SNYVVKH S +ASDF+RVTFVDEDWSKL +AISA+I
Sbjct: 370 LMRCYRIHITPSKIYCLGPEEEASNYVVKHHSEYASDFVRVTFVDEDWSKLSVNAISARI 429
Query: 1257 DSGVFSEPFRTAIYTRILSILRDGLPICSKKFEFLAFSASQLRSNSVWMFASNDNLTAET 1436
+ G FS+PF+T +Y RILSIL++G I KKFEFLAFSASQLR SVWMFASND+L AE+
Sbjct: 430 EQGFFSQPFKTGLYYRILSILKEGFIIGPKKFEFLAFSASQLREGSVWMFASNDSLNAES 489
Query: 1437 IRKWMGHFNGIRSVSKCAARMGQLFSSSMQTMNXXXXXXXXXXXXEITTEDGKKYCFSDG 1616
IR+WMGHF IRSVSKCAARMGQLFSSS QT+ E+TT + KY FSDG
Sbjct: 490 IRRWMGHFEEIRSVSKCAARMGQLFSSSRQTVEVRPWDVEEIPDIEVTTNN-TKYIFSDG 548
Query: 1617 IGKISLPFARQIAQKCGLSNT--PSAFQIRYGGYKGVIVSDRKSFWKLSLRRSMLKFESA 1790
IGK+S+ FAR+IA + GL +T PSAFQIR+GGYKGVI D SF LSLR SM KFES
Sbjct: 549 IGKMSVRFAREIAYRIGLDHTNPPSAFQIRFGGYKGVIAVDPSSFRNLSLRPSMRKFESD 608
Query: 1791 NTMLSVTKWSEYQPCFLNREIVCLLSTLGVKDEIFESMQHDQMQLLDKMLTDTEIALRVL 1970
ML++T WS+ QPC++NREI+ LLSTLG++DE+FE MQ D M+ LD+MLT+ E+AL VL
Sbjct: 609 CRMLNITSWSKSQPCYVNREIISLLSTLGIRDEVFELMQQDDMRELDEMLTNKEVALSVL 668
Query: 1971 DTLSGPDIRTAVKMLIQGYKPNSEPYLLMMLKAHREYQLLDIRSKCRIFVPKGRVLIGCL 2150
+ + +TA ML+QGY+P SEPYLLM+LKAH++ +L DIRSK +I VPKGRVL+GCL
Sbjct: 669 GKIGSAETKTAADMLLQGYEPISEPYLLMILKAHQDNRLTDIRSKFKIHVPKGRVLLGCL 728
Query: 2151 DETSVLDYGQVYIKVTMTKEELQKENTNFIKNADQITATIVGKVLVTKNPCLHPGDIRVL 2330
DET L YGQVYI++T +E ++ + D T T+VGKV V+KNPCLHPGD+RVL
Sbjct: 729 DETGKLKYGQVYIRITKNNKEQKENEQPYFSEDDGKTVTLVGKVAVSKNPCLHPGDVRVL 788
Query: 2331 QAVYDPLIDYLGLVDCLIFPQKGKRPHPNECSGGDLDGDLYFVCWDENLIPPETDAPMDY 2510
+AVYDP + LVDC++FPQ+G+RPHPNECSGGDLDGDLYFV WD+ LIP + DAPMDY
Sbjct: 789 EAVYDPGLHAKKLVDCVVFPQRGERPHPNECSGGDLDGDLYFVTWDDKLIPEKADAPMDY 848
Query: 2511 TPTRPRIMDHDVKLEEIQKYFVNYMINDNLGAISTTHLVYADSEPSKARCSKCLELANLH 2690
T RPRIMDH V LEEIQ++ VNYM++D+LGAIS HL++AD +P KAR +CL+LA LH
Sbjct: 849 TGARPRIMDHVVTLEEIQQHVVNYMLSDSLGAISNAHLIHADRDPMKARSPECLQLAALH 908
Query: 2691 SMAVDFAKTGAPAEMPRALRPKIFPDFMERFEKPMFNSPGVIGKLYRAASSYHEDLN--S 2864
SMAVDFAKTGAPAE+PR+LRP+ FPDFMER++KPM+ S GV+GKLYRAA S E + +
Sbjct: 909 SMAVDFAKTGAPAELPRSLRPREFPDFMERWDKPMYISNGVLGKLYRAAVSRMESSHALA 968
Query: 2865 ETITSQWVYDYDLLVXXXXXXXXXXXXYYSRYAEKLGSLMNYYGAEHEDEILTGNLRNKS 3044
+ S YD +L V +Y Y EKL +LMNYYGAEHEDEILTGN+RN+
Sbjct: 969 SQVQSSPTYDRELAVPGFEEFLEDAEKHYDLYVEKLTTLMNYYGAEHEDEILTGNIRNRL 1028
Query: 3045 AYLQKDRKRYGEMKDRMLIGVKNLKEEVDGWFK-CSCPEKDLFKMASAWYQVTYHPDY-R 3218
YL+KDRKRY +MKDR+ V L EEV GWFK C E++ ++ASAWY+V YHPD+ R
Sbjct: 1029 LYLRKDRKRYSDMKDRIFDSVNALHEEVRGWFKNCLKAEEEASRVASAWYRVAYHPDHRR 1088
Query: 3219 PETR-FLSFPWIVSDVLLRIKAARARK 3296
PE + F SFPWI+ D LL IKA ++ +
Sbjct: 1089 PEKKQFWSFPWIICDKLLAIKATKSNR 1115
>ref|XP_006836643.1| hypothetical protein AMTR_s00088p00026960 [Amborella trichopoda]
gi|548839203|gb|ERM99496.1| hypothetical protein
AMTR_s00088p00026960 [Amborella trichopoda]
Length = 1107
Score = 1162 bits (3006), Expect = 0.0
Identities = 594/1105 (53%), Positives = 773/1105 (69%), Gaps = 14/1105 (1%)
Frame = +3
Query: 21 ATLHVSNIPHTAVAAELFDYFDASVG--SVYACKIATARRNWKSKGFGRVQFDTFAAAER 194
+T+ VS IP +A+A EL + ++ +G S++AC I T RRNWKSKGFGRVQF+T A++
Sbjct: 4 STVKVSTIPLSALAEELLQFLESHIGPRSIFACTIVTERRNWKSKGFGRVQFETCNDAKK 63
Query: 195 ARLLDDEGRLPLFQHARLTVSPSHNDIVVRASEGQNRLEAAALHAGVLVGEGHMEIFEAW 374
A L EG+L +FQ L+++ DIV R +NR+ L G LV E M + +W
Sbjct: 64 ANDLSLEGKL-VFQGNHLSLTLGCEDIVPRPCRVENRVNGGFLKVGCLVYEDSMSVIGSW 122
Query: 375 EQVRVEIMPERKKLELFVDYGGEKYKLEVLFGDILESSSCCLDGR--ESILLQLQYAPRC 548
V+ E+MPERK+++ +V GE +KLE F DI+E+ C + G ++ILLQ++YAPR
Sbjct: 123 NLVKAELMPERKRVDFYVSERGELFKLETRFEDIVETFGCQIGGTNFDAILLQIKYAPRI 182
Query: 549 FVRIHGLEKESNDRFRVCREDIQFLWVRTTDFSPNGSIGKSFYYCLQLSDGLSCAEILRK 728
+ ++ K DR+ +C+E+ +F WVRTTDFS + +IG+S Y+C L + A I +
Sbjct: 183 YCKVPSSSKCGRDRYHICKEEYEFDWVRTTDFSASRTIGQSTYFCWMLHESTDIAIIKKS 242
Query: 729 LPFSRALGELIXXXXXXXXXXXXXX--FNCLGDCSVPYEILYQINSLVHMQKITFRQVTI 902
P + + L N L DC + YEIL+Q+N+LVH KI+ +
Sbjct: 243 FPHHKEIQTLYLDKGVSFCSSSDLVPIINTLPDCKLAYEILFQLNALVHAGKISGPTIGQ 302
Query: 903 DLFDILKGLPSDVAIKILMKMHKLVSTCYDPVQFIK---DELSRIKRSSTSPFSKSNIAQ 1073
DL DIL G +VA L K+HK +TCYDP+Q I+ ++++R K+ SP S
Sbjct: 303 DLLDILAG-NENVAKLALAKLHKSEATCYDPLQIIQRHINDITRNKKKLQSPSSSKLEDH 361
Query: 1074 NMMSCYRVLVTPSRIYCLGPELEKSNYVVKHFSAHASDFLRVTFVDEDWSKLPSDAISAK 1253
N+M+C+R LVTPS++Y LGPELE SNY+VKHF+A+A DFLRV+FVDEDWSKLPSDA+S K
Sbjct: 362 NLMNCHRALVTPSKVYFLGPELETSNYIVKHFAAYADDFLRVSFVDEDWSKLPSDALSPK 421
Query: 1254 IDSGVFSEPFRTAIYTRILSILRDGLPICSKKFEFLAFSASQLRSNSVWMFASNDNLTAE 1433
++SG F++P+RT IY RI+S+LRDG+ + SK+FEFLAFSASQLRSN+VWMFASN+N++ E
Sbjct: 422 LESGFFAKPYRTNIYKRIVSVLRDGIVLGSKRFEFLAFSASQLRSNAVWMFASNENISVE 481
Query: 1434 TIRKWMGHFNGIRSVSKCAARMGQLFSSSMQTMNXXXXXXXXXXXXEITTEDGKKYCFSD 1613
+IR+WMG F +R ++KCAARMGQLFSSS T++ E+TT DG +YCFSD
Sbjct: 482 SIREWMGEFKNLRCIAKCAARMGQLFSSSTPTLSVPLHEVQVIPDIEVTT-DGIEYCFSD 540
Query: 1614 GIGKISLPFARQIAQKCGLSNTPSAFQIRYGGYKGVIVSDRKSFWKLSLRRSMLKFESAN 1793
GIGKISL FARQ+A++CGL PSAFQIRYGGYKGVI D SF KL+LR SM KF S N
Sbjct: 541 GIGKISLAFARQVARRCGLKQPPSAFQIRYGGYKGVIAIDPTSFHKLALRPSMQKFNSNN 600
Query: 1794 TMLSVTKWSEYQPCFLNREIVCLLSTLGVKDEIFESMQHDQMQLLDKMLTDTEIALRVLD 1973
TML VTKWS+ PC+LNREI+ LLSTL + D FE+MQ QM LLD MLT ++AL VL+
Sbjct: 601 TMLCVTKWSQSMPCYLNREIITLLSTLEIADHKFEAMQKQQMTLLDDMLTKRDVALNVLE 660
Query: 1974 TLSGPDIRTAV-KMLIQGYKPNSEPYLLMMLKAHREYQLLDIRSKCRIFVPKGRVLIGCL 2150
+ D + + KML+ G P++EPYL MML+A R++QL DIRSKCR+FV KGRVL+GCL
Sbjct: 661 DMIVGDYKEVLTKMLLHGCDPSTEPYLSMMLQALRDHQLSDIRSKCRLFVSKGRVLLGCL 720
Query: 2151 DETSVLDYGQVYIKVTMTKEELQKENTNFIKNADQITATIVGKVLVTKNPCLHPGDIRVL 2330
DE+ L G+V+++VTMTK EL+ + F + D+ T+ +VG V+VTKNPCLHPGD+RVL
Sbjct: 721 DESGTLSQGEVFLRVTMTKAELENDGQPFFERIDETTSVVVGAVVVTKNPCLHPGDVRVL 780
Query: 2331 QAVYDPLIDYLGLVDCLIFPQKGKRPHPNECSGGDLDGDLYFVCWDENLIPPETDAPMDY 2510
QAV + G+VDCL+FPQ G+RPHPNECSGGDLDGDL+FVCWD++LIP D MDY
Sbjct: 781 QAVSGLELVDQGMVDCLVFPQNGERPHPNECSGGDLDGDLFFVCWDKDLIPTTNDPAMDY 840
Query: 2511 TPTRPRIMDHDVKLEEIQKYFVNYMINDNLGAISTTHLVYADSEPSKARCSKCLELANLH 2690
RPRIMDH+V +EEIQ++FV+YMINDNLGAIS HLV AD E SKAR KC+ELA LH
Sbjct: 841 LGRRPRIMDHEVTMEEIQEFFVDYMINDNLGAISNAHLVLADREKSKARSPKCIELAKLH 900
Query: 2691 SMAVDFAKTGAPAEMPRALRPKIFPDFMERFEKPMFNSPGVIGKLYRAASSYHEDLNSET 2870
SMAVDFAKTGAPAEMPR+L K +PDFMER EK + SPG++GKLYR A + E
Sbjct: 901 SMAVDFAKTGAPAEMPRSLMLKEYPDFMERGEKSTYASPGILGKLYRLAKEASNSQSFEL 960
Query: 2871 ITSQWV----YDYDLLVXXXXXXXXXXXXYYSRYAEKLGSLMNYYGAEHEDEILTGNLRN 3038
++S+ V YD +LL + Y +KL LM+YYGAE E EIL+GN+
Sbjct: 961 VSSKNVALPFYDTNLLAKGFEEFIELAVKHKEAYGQKLQELMDYYGAESESEILSGNISK 1020
Query: 3039 KSAYLQKDRKRYGEMKDRMLIGVKNLKEEVDGWFKCSCPEKDLFKMASAWYQVTYHPDYR 3218
KS YLQ+D ++YGE+KDR+LI VKNL+ E GWFK SC K+ASAWY VTY PD+
Sbjct: 1021 KSGYLQRDNRKYGEVKDRILIAVKNLQREAQGWFKSSCEPNQSSKLASAWYHVTYRPDHF 1080
Query: 3219 PETRFLSFPWIVSDVLLRIKAARAR 3293
+ F SFPWI++DVLL IKA +++
Sbjct: 1081 SKVNFFSFPWILADVLLNIKAFKSQ 1105
>gb|ADU04145.1| hypothetical protein [Gossypium hirsutum]
Length = 1147
Score = 1162 bits (3005), Expect = 0.0
Identities = 602/1106 (54%), Positives = 772/1106 (69%), Gaps = 18/1106 (1%)
Frame = +3
Query: 18 RATLHVSNIPHTAVAAELFDYFDASVG--SVYACKIATARRNWKSKGFGRVQFDTFAAAE 191
R TL +++IP TAVA +L D+F++ +G SV+A +I+T R NWKS+GFGRVQF A
Sbjct: 8 RPTLRLTHIPQTAVAKDLLDFFESKLGPDSVFAIEISTDRNNWKSRGFGRVQFAAPQAKS 67
Query: 192 RARLLDDEGRLPLFQHARLTVSPSHNDIVVRASEGQNRLEAAALHAGVLVGEGHMEIFEA 371
A L L LF+ L +S +++DI+ R +RL+ LHAG + + + + E
Sbjct: 68 DALRLSRHDHL-LFKSHSLKLSRTYDDIIPRPIRADHRLDGGVLHAGFMSSDDCLRVLER 126
Query: 372 WEQVRVEIMPERKKLELFVDYGGEKYKLEVLFGDILESSSCCLDGR--ESILLQLQYAPR 545
WE VR IMPER++LE +V GE YKL+ LF DI E+ CC DG ++LL+++YAPR
Sbjct: 127 WEGVRGWIMPERRRLEFWVWTDGECYKLDFLFDDIFETVGCCFDGSACNALLLRVRYAPR 186
Query: 546 CFVRIHG---LEKESNDRFRVCREDIQFLWVRTTDFSPNGSIGKSFYYCLQLSDGLSCAE 716
+ ++ G K S DR+ +C+E FLWVRTTDFS SIG+S + + + G S ++
Sbjct: 187 IYQKVSGPNVASKFSTDRYHICKEKFDFLWVRTTDFSRIKSIGQSTSFYWEFNAGFSISD 246
Query: 717 ILRKLPFSRA---LGELIXXXXXXXXXXXXXXFNCLGDCSVPYEILYQINSLVHMQKITF 887
+ LP R L D + YEIL+Q+N+LVH QKI+
Sbjct: 247 MSTYLPCYREDIQSPSLEARREFSSPSEIVPLVKFPSDSKLAYEILFQLNALVHTQKISI 306
Query: 888 RQVTIDLFDILKGLPSDVAIKILMKMHKLVSTCYDPVQFIKDELSRIKRSSTSPFSKSNI 1067
V DL IL GLP + A+ IL K+ L S CY+PV F+K +L K P S S
Sbjct: 307 AAVDTDLIGILSGLPVETAVMILQKLRLLQSPCYNPVSFVKAKLPTGKNYRI-PLSVSER 365
Query: 1068 AQN--MMSCYRVLVTPSRIYCLGPELEKSNYVVKHFSAHASDFLRVTFVDEDWSKLPSDA 1241
+N +MSC R L+TP++IYCLGPELE +NYVVK+F +ASDF+RVTFV+EDWSKL ++A
Sbjct: 366 LKNHNVMSCRRALITPTKIYCLGPELETANYVVKNFVEYASDFMRVTFVEEDWSKLSANA 425
Query: 1242 ISAKIDSGVFSEPFRTAIYTRILSILRDGLPICSKKFEFLAFSASQLRSNSVWMFASNDN 1421
IS + GVFS PF+T IY RIL +L++G+ I K+FEFLAFSASQLRSNSVWMFASND
Sbjct: 426 ISTGVHLGVFSRPFKTKIYDRILYVLQNGIVIGDKRFEFLAFSASQLRSNSVWMFASNDE 485
Query: 1422 LTAETIRKWMGHFNGIRSVSKCAARMGQLFSSSMQTMNXXXXXXXXXXXXEITTEDGKKY 1601
+ AE IR+WMG F IRS+SKCA+RMGQLFSSSM T+ E+ T DG Y
Sbjct: 486 VKAEDIREWMGCFKKIRSISKCASRMGQLFSSSMPTLVVPVQDVEIIDDIEVKT-DGINY 544
Query: 1602 CFSDGIGKISLPFARQIAQKCGLSNTPSAFQIRYGGYKGVIVSDRKSFWKLSLRRSMLKF 1781
CFSDGIGKISLPFARQ+A+KCGL++ PSAFQIRYGGYKGV+ DR SFWK+SLR SMLKF
Sbjct: 545 CFSDGIGKISLPFARQVAEKCGLNHIPSAFQIRYGGYKGVVAVDRNSFWKMSLRDSMLKF 604
Query: 1782 ESANTMLSVTKWSEYQPCFLNREIVCLLSTLGVKDEIFESMQHDQMQLLDKMLTDTEIAL 1961
ES ML+VTKWSE PCFLNREIV L STLG+KDE+FE MQ +Q+ LL KMLT+ E AL
Sbjct: 605 ESKVRMLNVTKWSESMPCFLNREIVTLFSTLGIKDEVFERMQEEQLCLLGKMLTNREAAL 664
Query: 1962 RVLDTLSGPDIRTAVKMLIQGYKPNSEPYLLMMLKAHREYQLLDIRSKCRIFVPKGRVLI 2141
L +L G + + + ++Q Y+PN +PYL MML+AH E L D++S+CRIFVPKGR+LI
Sbjct: 665 DTLQSLGGVNSKNILVEMLQFYEPNVQPYLSMMLQAHYENLLSDLKSRCRIFVPKGRILI 724
Query: 2142 GCLDETSVLDYGQVYIKVTMTKEELQKENTNFIKNADQITATIVGKVLVTKNPCLHPGDI 2321
GCLDET L+YGQVY+ + M K EL+ + ++ + D+ TA ++GKV+VTKNPCLHPGD+
Sbjct: 725 GCLDETGTLNYGQVYLCIKMKKAELECADQSYFRKVDEETAIVIGKVVVTKNPCLHPGDV 784
Query: 2322 RVLQAVYDPLIDYLGLVDCLIFPQKGKRPHPNECSGGDLDGDLYFVCWDENLIPPETDAP 2501
RVL+AVY+P ++ GLVDCL+FPQKG+RPHPNECSGGDLDGD +F+ WD++LIP +T+ P
Sbjct: 785 RVLEAVYEPQLEEKGLVDCLVFPQKGERPHPNECSGGDLDGDQFFISWDKDLIPCQTEPP 844
Query: 2502 MDYTPTRPRIMDHDVKLEEIQKYFVNYMINDNLGAISTTHLVYADSEPSKARCSKCLELA 2681
MDYT RPRIMDH+V LEEIQK+FV+YMIND LGAIST HLV+AD EP KA CL LA
Sbjct: 845 MDYTGRRPRIMDHEVTLEEIQKFFVDYMINDTLGAISTAHLVHADREPDKACSENCLALA 904
Query: 2682 NLHSMAVDFAKTGAPAEMPRALRPKIFPDFMERFEKPMFNSPGVIGKLYRAASSYHEDLN 2861
LHSMAVDFAKTGAPAEMPRAL+P+ FPDFM+R KPM+ S GV+GKLYRA +
Sbjct: 905 TLHSMAVDFAKTGAPAEMPRALKPREFPDFMQRGNKPMYTSSGVLGKLYRATINSTVQTR 964
Query: 2862 SETI----TSQWVYDYDLLVXXXXXXXXXXXXYYSRYAEKLGSLMNYYGAEHEDEILTGN 3029
S+ + ++ VYD+DL V + Y E++ LM+YY E+EDEILTGN
Sbjct: 965 SKFVWTKEMAELVYDHDLEVNGFESLISVAETHKEMYEERMSLLMSYYDVEYEDEILTGN 1024
Query: 3030 LRNKSAYLQKDRKRYGEMKDRMLIGVKNLKEEVDGWFKCSCPEKDLF-KMASAWYQVTYH 3206
+ NK+ +L +D +RYGEMK+R+++ VK+L+ E WFK SC + D K+ASAWY VTYH
Sbjct: 1025 IYNKAQFLLRDNRRYGEMKERIVLSVKDLQREAKEWFKSSCSKADEHQKLASAWYYVTYH 1084
Query: 3207 PDYRPE-TRFLSFPWIVSDVLLRIKA 3281
P+Y E LSFPWIV D+LLR+K+
Sbjct: 1085 PNYFQERMNSLSFPWIVGDILLRVKS 1110