BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Zingiber24_contig00009529
         (665 letters)

Database: ./nr 
           37,332,560 sequences; 13,225,080,153 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

dbj|BAD23376.1| putative phage-type RNA polymerase [Oryza sativa...   288   1e-75
ref|NP_001062659.1| Os09g0246200 [Oryza sativa Japonica Group] g...   288   1e-75
gb|EEE69251.1| hypothetical protein OsJ_28503 [Oryza sativa Japo...   288   1e-75
ref|XP_004956403.1| PREDICTED: DNA-directed RNA polymerase 1B, m...   286   4e-75
ref|XP_003577161.1| PREDICTED: DNA-directed RNA polymerase 2, ch...   280   3e-73
ref|XP_002461035.1| hypothetical protein SORBIDRAFT_02g039520 [S...   279   5e-73
ref|XP_006660444.1| PREDICTED: DNA-directed RNA polymerase 1B, m...   279   6e-73
ref|NP_001104931.1| RNA polymerase T phage-like 1 [Zea mays] gi|...   277   2e-72
tpg|DAA63638.1| TPA: RNA polymerase T phage-like 1 [Zea mays]         276   3e-72
ref|XP_002267464.1| PREDICTED: DNA-directed RNA polymerase 1, mi...   275   7e-72
ref|XP_006660443.1| PREDICTED: DNA-directed RNA polymerase 1B, m...   274   2e-71
sp|Q8VWF8.2|RPOT2_NICSY RecName: Full=DNA-directed RNA polymeras...   273   4e-71
sp|Q8L6J3.2|RPO2B_TOBAC RecName: Full=DNA-directed RNA polymeras...   272   8e-71
ref|XP_002278535.1| PREDICTED: DNA-directed RNA polymerase 2, ch...   271   2e-70
emb|CBI27412.3| unnamed protein product [Vitis vinifera]              270   2e-70
dbj|BAB78464.1| T7 bacteriophage-type single subunit RNA polymer...   270   3e-70
emb|CAE52834.1| RNA polymerase [Hordeum vulgare]                      270   4e-70
gb|AAF32492.1|AF091838_1 single-subunit RNA polymerase G [Tritic...   268   8e-70
gb|EMT11393.1| DNA-directed RNA polymerase 2, chloroplastic/mito...   268   1e-69
gb|EMS47556.1| DNA-directed RNA polymerase 2, chloroplastic/mito...   268   1e-69

>dbj|BAD23376.1| putative phage-type RNA polymerase [Oryza sativa Japonica Group]
           gi|48716846|dbj|BAD23544.1| putative phage-type RNA
           polymerase [Oryza sativa Japonica Group]
           gi|215694941|dbj|BAG90132.1| unnamed protein product
           [Oryza sativa Japonica Group]
          Length = 951

 Score =  288 bits (737), Expect = 1e-75
 Identities = 143/222 (64%), Positives = 172/222 (77%), Gaps = 1/222 (0%)
 Frame = +3

Query: 3   LLMDMCEQKLAPNLPFIKSLLLDWFEPFRDAIAAEQEICKKNNSKSSHAPFFNLLPADMM 182
           LL DMC+QKLAPNLP++KSL L WFEP RD I AEQE+  +  +++SHA +FN+LPADMM
Sbjct: 202 LLADMCQQKLAPNLPYVKSLFLGWFEPLRDQIIAEQELVGERGARASHARYFNMLPADMM 261

Query: 183 AVITMHKLMGLVMTNTGHGSVHLVHAACQIGDAIEQEVRIHRFLEXXXXXXXXXXXSEEV 362
           AVITMHKLMGL+MT +G GSV ++ AACQIG+AIE EVRIH+FLE           +EE 
Sbjct: 262 AVITMHKLMGLLMTGSGDGSVRVIQAACQIGEAIEHEVRIHKFLEKTKKKSNKEMDNEEE 321

Query: 363 EGDS-VMEDQTFLRKKVTTLMKKQKIRQLNMIVKRQDDSKPWGQAAQAMVGSRLIELLMN 539
            GDS + ++Q  LRKKVT LMKKQKIRQ+  IVK+QD+SKPWGQ A A VGSRLIEL++ 
Sbjct: 322 GGDSDIAKEQERLRKKVTDLMKKQKIRQVRNIVKKQDNSKPWGQDAHAKVGSRLIELMIE 381

Query: 540 TAYVQPPVSQSADAPPDIRPAFRHTRSTAGKEPKKLTRRYGV 665
           TAY+QPP SQSAD PPDIRPAF H   T  +E +K +RRYGV
Sbjct: 382 TAYIQPPASQSADGPPDIRPAFTHEMRTVAREQQKSSRRYGV 423


>ref|NP_001062659.1| Os09g0246200 [Oryza sativa Japonica Group]
           gi|30698494|dbj|BAC76604.1| RpoT1 [Oryza sativa Japonica
           Group] gi|37360973|dbj|BAC98395.1| T7 bacteriophage-type
           single subunit RNA polymerase [Oryza sativa Japonica
           Group] gi|113630892|dbj|BAF24573.1| Os09g0246200 [Oryza
           sativa Japonica Group]
          Length = 1017

 Score =  288 bits (737), Expect = 1e-75
 Identities = 143/222 (64%), Positives = 172/222 (77%), Gaps = 1/222 (0%)
 Frame = +3

Query: 3   LLMDMCEQKLAPNLPFIKSLLLDWFEPFRDAIAAEQEICKKNNSKSSHAPFFNLLPADMM 182
           LL DMC+QKLAPNLP++KSL L WFEP RD I AEQE+  +  +++SHA +FN+LPADMM
Sbjct: 202 LLADMCQQKLAPNLPYVKSLFLGWFEPLRDQIIAEQELVGERGARASHARYFNMLPADMM 261

Query: 183 AVITMHKLMGLVMTNTGHGSVHLVHAACQIGDAIEQEVRIHRFLEXXXXXXXXXXXSEEV 362
           AVITMHKLMGL+MT +G GSV ++ AACQIG+AIE EVRIH+FLE           +EE 
Sbjct: 262 AVITMHKLMGLLMTGSGDGSVRVIQAACQIGEAIEHEVRIHKFLEKTKKKSNKEMDNEEE 321

Query: 363 EGDS-VMEDQTFLRKKVTTLMKKQKIRQLNMIVKRQDDSKPWGQAAQAMVGSRLIELLMN 539
            GDS + ++Q  LRKKVT LMKKQKIRQ+  IVK+QD+SKPWGQ A A VGSRLIEL++ 
Sbjct: 322 GGDSDIAKEQERLRKKVTDLMKKQKIRQVRNIVKKQDNSKPWGQDAHAKVGSRLIELMIE 381

Query: 540 TAYVQPPVSQSADAPPDIRPAFRHTRSTAGKEPKKLTRRYGV 665
           TAY+QPP SQSAD PPDIRPAF H   T  +E +K +RRYGV
Sbjct: 382 TAYIQPPASQSADGPPDIRPAFTHEMRTVAREQQKSSRRYGV 423


>gb|EEE69251.1| hypothetical protein OsJ_28503 [Oryza sativa Japonica Group]
          Length = 983

 Score =  288 bits (737), Expect = 1e-75
 Identities = 143/222 (64%), Positives = 172/222 (77%), Gaps = 1/222 (0%)
 Frame = +3

Query: 3   LLMDMCEQKLAPNLPFIKSLLLDWFEPFRDAIAAEQEICKKNNSKSSHAPFFNLLPADMM 182
           LL DMC+QKLAPNLP++KSL L WFEP RD I AEQE+  +  +++SHA +FN+LPADMM
Sbjct: 168 LLADMCQQKLAPNLPYVKSLFLGWFEPLRDQIIAEQELVGERGARASHARYFNMLPADMM 227

Query: 183 AVITMHKLMGLVMTNTGHGSVHLVHAACQIGDAIEQEVRIHRFLEXXXXXXXXXXXSEEV 362
           AVITMHKLMGL+MT +G GSV ++ AACQIG+AIE EVRIH+FLE           +EE 
Sbjct: 228 AVITMHKLMGLLMTGSGDGSVRVIQAACQIGEAIEHEVRIHKFLEKTKKKSNKEMDNEEE 287

Query: 363 EGDS-VMEDQTFLRKKVTTLMKKQKIRQLNMIVKRQDDSKPWGQAAQAMVGSRLIELLMN 539
            GDS + ++Q  LRKKVT LMKKQKIRQ+  IVK+QD+SKPWGQ A A VGSRLIEL++ 
Sbjct: 288 GGDSDIAKEQERLRKKVTDLMKKQKIRQVRNIVKKQDNSKPWGQDAHAKVGSRLIELMIE 347

Query: 540 TAYVQPPVSQSADAPPDIRPAFRHTRSTAGKEPKKLTRRYGV 665
           TAY+QPP SQSAD PPDIRPAF H   T  +E +K +RRYGV
Sbjct: 348 TAYIQPPASQSADGPPDIRPAFTHEMRTVAREQQKSSRRYGV 389


>ref|XP_004956403.1| PREDICTED: DNA-directed RNA polymerase 1B, mitochondrial-like
           [Setaria italica]
          Length = 1005

 Score =  286 bits (732), Expect = 4e-75
 Identities = 145/222 (65%), Positives = 169/222 (76%), Gaps = 1/222 (0%)
 Frame = +3

Query: 3   LLMDMCEQKLAPNLPFIKSLLLDWFEPFRDAIAAEQEICKKNNSKSSHAPFFNLLPADMM 182
           LL DMCEQKLAPNLP+IKSL L WFEP RD IAAEQE+     S++SH P+FN+LPADMM
Sbjct: 190 LLTDMCEQKLAPNLPYIKSLFLGWFEPLRDQIAAEQELVANRGSRASHGPYFNMLPADMM 249

Query: 183 AVITMHKLMGLVMTNTGHGSVHLVHAACQIGDAIEQEVRIHRFLEXXXXXXXXXXXSEEV 362
           AVITMHKLMGL+MT +G GSV ++ AACQIG+AIE EVRIHRFLE           +EE 
Sbjct: 250 AVITMHKLMGLLMTGSGDGSVRVIQAACQIGEAIEHEVRIHRFLEKTRKKSNKEKENEEE 309

Query: 363 EGDS-VMEDQTFLRKKVTTLMKKQKIRQLNMIVKRQDDSKPWGQAAQAMVGSRLIELLMN 539
             DS + ++Q  LRKKVT LMKKQK+RQ+  IVK QDDS+PWGQ A A VGSRLIEL + 
Sbjct: 310 IFDSDIAKEQQRLRKKVTDLMKKQKLRQVRKIVKNQDDSRPWGQDAHAKVGSRLIELFIE 369

Query: 540 TAYVQPPVSQSADAPPDIRPAFRHTRSTAGKEPKKLTRRYGV 665
           TA++QPP SQS+D  PDIRPAFRH   T  KE +K +RRYGV
Sbjct: 370 TAHIQPPASQSSDGLPDIRPAFRHEMRTVPKEQQKHSRRYGV 411


>ref|XP_003577161.1| PREDICTED: DNA-directed RNA polymerase 2,
           chloroplastic/mitochondrial-like [Brachypodium
           distachyon]
          Length = 992

 Score =  280 bits (716), Expect = 3e-73
 Identities = 140/222 (63%), Positives = 170/222 (76%), Gaps = 1/222 (0%)
 Frame = +3

Query: 3   LLMDMCEQKLAPNLPFIKSLLLDWFEPFRDAIAAEQEICKKNNSKSSHAPFFNLLPADMM 182
           LL DMCE KLAPNLP++KSL L WFEP RD I AEQE+  +  +++SHAP+FN+LPADMM
Sbjct: 177 LLADMCEHKLAPNLPYVKSLFLGWFEPLRDQIIAEQELVGERGARASHAPYFNMLPADMM 236

Query: 183 AVITMHKLMGLVMTNTGHGSVHLVHAACQIGDAIEQEVRIHRFLEXXXXXXXXXXXSEEV 362
           AVITMHKLMGL+MT +G GSV ++ AACQIG+AIE EVRIH+FLE           +   
Sbjct: 237 AVITMHKLMGLLMTGSGDGSVRVIQAACQIGEAIEHEVRIHKFLEKTKKKNTKEVDNVVE 296

Query: 363 EGDS-VMEDQTFLRKKVTTLMKKQKIRQLNMIVKRQDDSKPWGQAAQAMVGSRLIELLMN 539
            GDS + ++Q  LRKKVT LMKKQKIRQ+  IVK+QD ++PWGQ A A VGSRLIELL+ 
Sbjct: 297 AGDSDIAKEQQRLRKKVTDLMKKQKIRQVRNIVKKQDSTRPWGQDAHAKVGSRLIELLIE 356

Query: 540 TAYVQPPVSQSADAPPDIRPAFRHTRSTAGKEPKKLTRRYGV 665
           TA++QPPVSQSAD+ PDIRPAF H   T  +E +K +RRYGV
Sbjct: 357 TAHIQPPVSQSADSTPDIRPAFTHEMRTVTREQQKSSRRYGV 398


>ref|XP_002461035.1| hypothetical protein SORBIDRAFT_02g039520 [Sorghum bicolor]
           gi|241924412|gb|EER97556.1| hypothetical protein
           SORBIDRAFT_02g039520 [Sorghum bicolor]
          Length = 976

 Score =  279 bits (714), Expect = 5e-73
 Identities = 142/223 (63%), Positives = 168/223 (75%), Gaps = 2/223 (0%)
 Frame = +3

Query: 3   LLMDMCEQKLAPNLPFIKSLLLDWFEPFRDAIAAEQEICKKNNSKSSHAPFFNLLPADMM 182
           LL DMCEQKLAPNLP+IKSL L WFEP RD I  EQE+     S++SH P+FN+LPADMM
Sbjct: 160 LLADMCEQKLAPNLPYIKSLFLGWFEPLRDQIVTEQELVADPGSRASHGPYFNMLPADMM 219

Query: 183 AVITMHKLMGLVMTNTGHGSVHLVHAACQIGDAIEQEVRIHRFLE-XXXXXXXXXXXSEE 359
           AVITMHKLMGL+MT +G GSV ++ AACQIG+AIE EVRI+RFLE             EE
Sbjct: 220 AVITMHKLMGLLMTGSGDGSVRVIQAACQIGEAIEHEVRINRFLEKTRKKSNKEMEKEEE 279

Query: 360 VEGDS-VMEDQTFLRKKVTTLMKKQKIRQLNMIVKRQDDSKPWGQAAQAMVGSRLIELLM 536
             GD+ + ++Q  LRKKVT LMKKQK+RQ+  IVK QD+S+PWGQ  QA VGSRLIEL M
Sbjct: 280 AAGDTDIAKEQQRLRKKVTDLMKKQKLRQVRNIVKNQDNSRPWGQDVQAKVGSRLIELFM 339

Query: 537 NTAYVQPPVSQSADAPPDIRPAFRHTRSTAGKEPKKLTRRYGV 665
           +TA++QPP SQS+D  PDIRPAFRH   T  KE +K +RRYGV
Sbjct: 340 DTAHIQPPASQSSDGLPDIRPAFRHEMRTVAKEQQKSSRRYGV 382


>ref|XP_006660444.1| PREDICTED: DNA-directed RNA polymerase 1B, mitochondrial-like
           isoform X2 [Oryza brachyantha]
          Length = 839

 Score =  279 bits (713), Expect = 6e-73
 Identities = 138/222 (62%), Positives = 168/222 (75%), Gaps = 1/222 (0%)
 Frame = +3

Query: 3   LLMDMCEQKLAPNLPFIKSLLLDWFEPFRDAIAAEQEICKKNNSKSSHAPFFNLLPADMM 182
           LL DMCE KLAPNLP++KSL L WFEP RD I AEQ++  +  +++SHA +FN+LPADMM
Sbjct: 24  LLADMCEHKLAPNLPYVKSLFLGWFEPLRDQIIAEQDLVCERRARASHARYFNMLPADMM 83

Query: 183 AVITMHKLMGLVMTNTGHGSVHLVHAACQIGDAIEQEVRIHRFLEXXXXXXXXXXXSEEV 362
           AVITMHKLMGL+MT +G GSV ++ AACQIG+AIE EVR+H+FLE           +EE 
Sbjct: 84  AVITMHKLMGLLMTGSGDGSVRVIQAACQIGEAIEHEVRLHKFLEKPKKKRSKEMDNEEE 143

Query: 363 EGDS-VMEDQTFLRKKVTTLMKKQKIRQLNMIVKRQDDSKPWGQAAQAMVGSRLIELLMN 539
            G S + ++Q  LRKKVT LMKK K+RQ+  IVK+QD+SKPWGQ   A VGSRLIEL++ 
Sbjct: 144 VGCSDIAKEQERLRKKVTDLMKKHKLRQVRYIVKKQDNSKPWGQDVHAKVGSRLIELMIE 203

Query: 540 TAYVQPPVSQSADAPPDIRPAFRHTRSTAGKEPKKLTRRYGV 665
           TAY+QPP SQSAD PPDIRPAF H   T  KE +K +RRYGV
Sbjct: 204 TAYIQPPASQSADGPPDIRPAFTHEMRTVAKEQQKSSRRYGV 245


>ref|NP_001104931.1| RNA polymerase T phage-like 1 [Zea mays]
           gi|4559304|gb|AAD22976.1|AF127021_1 T7-like RNA
           polymerase [Zea mays]
          Length = 975

 Score =  277 bits (708), Expect = 2e-72
 Identities = 140/222 (63%), Positives = 167/222 (75%), Gaps = 1/222 (0%)
 Frame = +3

Query: 3   LLMDMCEQKLAPNLPFIKSLLLDWFEPFRDAIAAEQEICKKNNSKSSHAPFFNLLPADMM 182
           LL DMCEQKLAPNLP++KSL L WFEP RD IA EQE+     S++SH PFF++LPADMM
Sbjct: 160 LLADMCEQKLAPNLPYVKSLFLGWFEPLRDQIATEQELVADPGSRASHGPFFSMLPADMM 219

Query: 183 AVITMHKLMGLVMTNTGHGSVHLVHAACQIGDAIEQEVRIHRFLEXXXXXXXXXXXSEEV 362
           AVITMHKLMGL+MT +G GSV ++ AACQIG+AIE EVRI+RFLE           +EE 
Sbjct: 220 AVITMHKLMGLLMTGSGDGSVRVIQAACQIGEAIEHEVRINRFLEKTRKKNNKEMENEEE 279

Query: 363 EGD-SVMEDQTFLRKKVTTLMKKQKIRQLNMIVKRQDDSKPWGQAAQAMVGSRLIELLMN 539
            GD ++  +Q  LRKKVT LMKKQK+RQ+  IVK QD S+PWGQ A A VGSRLI+L + 
Sbjct: 280 AGDTNIAVEQQRLRKKVTDLMKKQKLRQVRNIVKNQDKSRPWGQDAHAKVGSRLIDLFIG 339

Query: 540 TAYVQPPVSQSADAPPDIRPAFRHTRSTAGKEPKKLTRRYGV 665
           TA++QPP SQS+D  PDIRPAFRH   T  KE +K +RRYGV
Sbjct: 340 TAHIQPPASQSSDGLPDIRPAFRHEMRTMVKEQQKSSRRYGV 381


>tpg|DAA63638.1| TPA: RNA polymerase T phage-like 1 [Zea mays]
          Length = 975

 Score =  276 bits (707), Expect = 3e-72
 Identities = 140/222 (63%), Positives = 167/222 (75%), Gaps = 1/222 (0%)
 Frame = +3

Query: 3   LLMDMCEQKLAPNLPFIKSLLLDWFEPFRDAIAAEQEICKKNNSKSSHAPFFNLLPADMM 182
           LL DMCEQKLAPNLP++KSL L WFEP RD IA EQE+     S++SH PFF++LPADMM
Sbjct: 160 LLADMCEQKLAPNLPYVKSLFLGWFEPLRDQIATEQELVADPGSRASHGPFFSMLPADMM 219

Query: 183 AVITMHKLMGLVMTNTGHGSVHLVHAACQIGDAIEQEVRIHRFLEXXXXXXXXXXXSEEV 362
           AVITMHKLMGL+MT +G GSV ++ AACQIG+AIE EVRI+RFLE           +EE 
Sbjct: 220 AVITMHKLMGLLMTGSGDGSVRVIQAACQIGEAIEHEVRINRFLEKTRKKNNKEMENEEE 279

Query: 363 EGD-SVMEDQTFLRKKVTTLMKKQKIRQLNMIVKRQDDSKPWGQAAQAMVGSRLIELLMN 539
            GD ++  +Q  LRKKVT LMKKQK+RQ+  IVK QD S+PWGQ A A VGSRLI+L + 
Sbjct: 280 AGDTNIAIEQQRLRKKVTDLMKKQKLRQVRNIVKNQDKSRPWGQDAHAKVGSRLIDLFIG 339

Query: 540 TAYVQPPVSQSADAPPDIRPAFRHTRSTAGKEPKKLTRRYGV 665
           TA++QPP SQS+D  PDIRPAFRH   T  KE +K +RRYGV
Sbjct: 340 TAHIQPPASQSSDGLPDIRPAFRHEMRTMVKEQQKSSRRYGV 381


>ref|XP_002267464.1| PREDICTED: DNA-directed RNA polymerase 1, mitochondrial [Vitis
           vinifera]
          Length = 978

 Score =  275 bits (704), Expect = 7e-72
 Identities = 141/223 (63%), Positives = 167/223 (74%), Gaps = 2/223 (0%)
 Frame = +3

Query: 3   LLMDMCEQKLAPNLPFIKSLLLDWFEPFRDAIAAEQEICKKNNSKSSHAPFFNLLPADMM 182
           LL DMCEQKLAPNLP+IKSL L WFEP RD IAAEQ++CK+  +++++AP+F+ LPADMM
Sbjct: 165 LLSDMCEQKLAPNLPYIKSLFLGWFEPLRDVIAAEQDLCKQGKNRAAYAPYFDHLPADMM 224

Query: 183 AVITMHKLMGLVMTNTGHGSVHLVHAACQIGDAIEQEVRIHRFLEXXXXXXXXXXXSEEV 362
           AVITMHKLMGL+MT  G+GS  +V AAC IG+AIE EVRI RF+E           S   
Sbjct: 225 AVITMHKLMGLLMTGEGNGSARVVQAACHIGEAIEHEVRIQRFME---KTKKKSASSNNP 281

Query: 363 EGDS--VMEDQTFLRKKVTTLMKKQKIRQLNMIVKRQDDSKPWGQAAQAMVGSRLIELLM 536
           +G S  V ++Q  LRKKV+ LMKKQK++Q+  IVKRQDDSKPWGQ A   VGSRLIELL+
Sbjct: 282 DGGSNPVTKEQEKLRKKVSMLMKKQKLQQVRQIVKRQDDSKPWGQDANVKVGSRLIELLI 341

Query: 537 NTAYVQPPVSQSADAPPDIRPAFRHTRSTAGKEPKKLTRRYGV 665
            TAY+QPP  Q  D PPDIRPAF HT  T  KE +K TRRYGV
Sbjct: 342 ETAYIQPPADQLGDGPPDIRPAFVHTLKTVIKETQKGTRRYGV 384


>ref|XP_006660443.1| PREDICTED: DNA-directed RNA polymerase 1B, mitochondrial-like
           isoform X1 [Oryza brachyantha]
          Length = 703

 Score =  274 bits (700), Expect = 2e-71
 Identities = 135/218 (61%), Positives = 165/218 (75%), Gaps = 1/218 (0%)
 Frame = +3

Query: 15  MCEQKLAPNLPFIKSLLLDWFEPFRDAIAAEQEICKKNNSKSSHAPFFNLLPADMMAVIT 194
           MCE KLAPNLP++KSL L WFEP RD I AEQ++  +  +++SHA +FN+LPADMMAVIT
Sbjct: 1   MCEHKLAPNLPYVKSLFLGWFEPLRDQIIAEQDLVCERRARASHARYFNMLPADMMAVIT 60

Query: 195 MHKLMGLVMTNTGHGSVHLVHAACQIGDAIEQEVRIHRFLEXXXXXXXXXXXSEEVEGDS 374
           MHKLMGL+MT +G GSV ++ AACQIG+AIE EVR+H+FLE           +EE  G S
Sbjct: 61  MHKLMGLLMTGSGDGSVRVIQAACQIGEAIEHEVRLHKFLEKPKKKRSKEMDNEEEVGCS 120

Query: 375 -VMEDQTFLRKKVTTLMKKQKIRQLNMIVKRQDDSKPWGQAAQAMVGSRLIELLMNTAYV 551
            + ++Q  LRKKVT LMKK K+RQ+  IVK+QD+SKPWGQ   A VGSRLIEL++ TAY+
Sbjct: 121 DIAKEQERLRKKVTDLMKKHKLRQVRYIVKKQDNSKPWGQDVHAKVGSRLIELMIETAYI 180

Query: 552 QPPVSQSADAPPDIRPAFRHTRSTAGKEPKKLTRRYGV 665
           QPP SQSAD PPDIRPAF H   T  KE +K +RRYGV
Sbjct: 181 QPPASQSADGPPDIRPAFTHEMRTVAKEQQKSSRRYGV 218


>sp|Q8VWF8.2|RPOT2_NICSY RecName: Full=DNA-directed RNA polymerase 2,
           chloroplastic/mitochondrial; AltName: Full=NsRpoT-B;
           AltName: Full=T7 bacteriophage-type single subunit RNA
           polymerase 2; Flags: Precursor
           gi|21425639|emb|CAC82575.2| phage-type RNA polymerase
           [Nicotiana sylvestris]
          Length = 1020

 Score =  273 bits (697), Expect = 4e-71
 Identities = 137/221 (61%), Positives = 164/221 (74%)
 Frame = +3

Query: 3   LLMDMCEQKLAPNLPFIKSLLLDWFEPFRDAIAAEQEICKKNNSKSSHAPFFNLLPADMM 182
           LL DMCEQKLAPNLP++KSL L WFEP RD IA EQE+C +  SK+++A +F  LPADMM
Sbjct: 207 LLFDMCEQKLAPNLPYVKSLFLGWFEPLRDKIAEEQELCSQGKSKAAYAKYFYQLPADMM 266

Query: 183 AVITMHKLMGLVMTNTGHGSVHLVHAACQIGDAIEQEVRIHRFLEXXXXXXXXXXXSEEV 362
           AVITMHKLMGL+MT   HG+  +V AA  IGDAIEQEVRIH FLE            +E 
Sbjct: 267 AVITMHKLMGLLMTGGDHGTARVVQAALVIGDAIEQEVRIHNFLEKTKKQKAEKDKQKE- 325

Query: 363 EGDSVMEDQTFLRKKVTTLMKKQKIRQLNMIVKRQDDSKPWGQAAQAMVGSRLIELLMNT 542
           +G+ V ++Q  LRKKVT LMKKQK+R +  IV+RQDDSKPWGQ A+A VGSRLI+LL+ T
Sbjct: 326 DGEHVTQEQEKLRKKVTNLMKKQKLRAVGQIVRRQDDSKPWGQDARAKVGSRLIDLLLQT 385

Query: 543 AYVQPPVSQSADAPPDIRPAFRHTRSTAGKEPKKLTRRYGV 665
           AY+QPP +Q A  PPDIRPAF H+  T  KE K  +RRYG+
Sbjct: 386 AYIQPPANQLAVDPPDIRPAFVHSVRTVAKETKSASRRYGI 426


>sp|Q8L6J3.2|RPO2B_TOBAC RecName: Full=DNA-directed RNA polymerase 2B,
           chloroplastic/mitochondrial; AltName:
           Full=NictaRpoT2-tom; AltName: Full=T7 bacteriophage-type
           single subunit RNA polymerase 2B; Flags: Precursor
           gi|21425665|emb|CAC95020.1| mitochondrial and
           chloroplast RNA polymerase [Nicotiana tabacum]
          Length = 1021

 Score =  272 bits (695), Expect = 8e-71
 Identities = 137/221 (61%), Positives = 163/221 (73%)
 Frame = +3

Query: 3   LLMDMCEQKLAPNLPFIKSLLLDWFEPFRDAIAAEQEICKKNNSKSSHAPFFNLLPADMM 182
           LL DMCEQKLAPNLP++KSL L WFEP RD IA EQE+C +  SK+++A +   LPADMM
Sbjct: 208 LLFDMCEQKLAPNLPYVKSLFLGWFEPLRDKIAEEQELCSQGKSKAAYAKYLYQLPADMM 267

Query: 183 AVITMHKLMGLVMTNTGHGSVHLVHAACQIGDAIEQEVRIHRFLEXXXXXXXXXXXSEEV 362
           AVITMHKLMGL+MT   HG+  +V AA  IGDAIEQEVRIH FLE            +E 
Sbjct: 268 AVITMHKLMGLLMTGGDHGTARVVQAALVIGDAIEQEVRIHNFLEKTKKQKAEKDKQKE- 326

Query: 363 EGDSVMEDQTFLRKKVTTLMKKQKIRQLNMIVKRQDDSKPWGQAAQAMVGSRLIELLMNT 542
           +G+ V ++Q  LRKKVT LMKKQK+R +  IV+RQDDSKPWGQ A+A VGSRLIELL+ T
Sbjct: 327 DGEHVTQEQEKLRKKVTNLMKKQKLRAVGQIVRRQDDSKPWGQDAKAKVGSRLIELLLQT 386

Query: 543 AYVQPPVSQSADAPPDIRPAFRHTRSTAGKEPKKLTRRYGV 665
           AY+QPP +Q A  PPDIRPAF H+  T  KE K  +RRYG+
Sbjct: 387 AYIQPPANQLAVDPPDIRPAFLHSVRTVAKETKSASRRYGI 427


>ref|XP_002278535.1| PREDICTED: DNA-directed RNA polymerase 2,
           chloroplastic/mitochondrial [Vitis vinifera]
           gi|298204431|emb|CBI16911.3| unnamed protein product
           [Vitis vinifera]
          Length = 1035

 Score =  271 bits (692), Expect = 2e-70
 Identities = 140/223 (62%), Positives = 165/223 (73%), Gaps = 2/223 (0%)
 Frame = +3

Query: 3   LLMDMCEQKLAPNLPFIKSLLLDWFEPFRDAIAAEQEICKKNNSKSSHAPFFNLLPADMM 182
           LLMDMCEQKLAPNLP++KSL L WFEP RDAI  EQE+C+   +K+++AP+F+ LPADMM
Sbjct: 219 LLMDMCEQKLAPNLPYMKSLFLGWFEPLRDAIVKEQELCRLGKNKAAYAPYFDQLPADMM 278

Query: 183 AVITMHKLMGLVMTNTGHGSVHLVHAACQIGDAIEQEVRIHRFLEXXXXXXXXXXXSEEV 362
           +VITMHKL+GL+MT   HGS  +V AAC IGDAIEQEVRIH FLE           + E 
Sbjct: 279 SVITMHKLVGLLMTGGEHGSTRVVQAACVIGDAIEQEVRIHNFLEKTKRKKVGKDKNVEG 338

Query: 363 EG-DSVMEDQTFLRKKVTTLMKKQKIRQLNMIVKRQDDSKPWGQAAQAMVGSRLIELLMN 539
            G D V+ +Q  LRKKVT LMKKQK+     IVK  D+SKPWG  A+A VGSRLIELLM 
Sbjct: 339 GGFDPVIHEQEKLRKKVTNLMKKQKLHAARQIVKGHDNSKPWGPEAKAKVGSRLIELLMQ 398

Query: 540 TAYVQPPV-SQSADAPPDIRPAFRHTRSTAGKEPKKLTRRYGV 665
           TAY+QPPV +Q AD PPDIRPAF HT  T  +E KK+ RR+GV
Sbjct: 399 TAYIQPPVDNQLADTPPDIRPAFVHTFKTVMREAKKIGRRFGV 441


>emb|CBI27412.3| unnamed protein product [Vitis vinifera]
          Length = 810

 Score =  270 bits (691), Expect = 2e-70
 Identities = 138/219 (63%), Positives = 164/219 (74%), Gaps = 2/219 (0%)
 Frame = +3

Query: 15  MCEQKLAPNLPFIKSLLLDWFEPFRDAIAAEQEICKKNNSKSSHAPFFNLLPADMMAVIT 194
           MCEQKLAPNLP+IKSL L WFEP RD IAAEQ++CK+  +++++AP+F+ LPADMMAVIT
Sbjct: 1   MCEQKLAPNLPYIKSLFLGWFEPLRDVIAAEQDLCKQGKNRAAYAPYFDHLPADMMAVIT 60

Query: 195 MHKLMGLVMTNTGHGSVHLVHAACQIGDAIEQEVRIHRFLEXXXXXXXXXXXSEEVEGDS 374
           MHKLMGL+MT  G+GS  +V AAC IG+AIE EVRI RF+E           S   +G S
Sbjct: 61  MHKLMGLLMTGEGNGSARVVQAACHIGEAIEHEVRIQRFME---KTKKKSASSNNPDGGS 117

Query: 375 --VMEDQTFLRKKVTTLMKKQKIRQLNMIVKRQDDSKPWGQAAQAMVGSRLIELLMNTAY 548
             V ++Q  LRKKV+ LMKKQK++Q+  IVKRQDDSKPWGQ A   VGSRLIELL+ TAY
Sbjct: 118 NPVTKEQEKLRKKVSMLMKKQKLQQVRQIVKRQDDSKPWGQDANVKVGSRLIELLIETAY 177

Query: 549 VQPPVSQSADAPPDIRPAFRHTRSTAGKEPKKLTRRYGV 665
           +QPP  Q  D PPDIRPAF HT  T  KE +K TRRYGV
Sbjct: 178 IQPPADQLGDGPPDIRPAFVHTLKTVIKETQKGTRRYGV 216


>dbj|BAB78464.1| T7 bacteriophage-type single subunit RNA polymerase [Nicotiana
           sylvestris] gi|17221595|dbj|BAB78465.1| T7
           bacteriophage-type single subunit RNA polymerase
           [Nicotiana sylvestris]
          Length = 1020

 Score =  270 bits (690), Expect = 3e-70
 Identities = 136/221 (61%), Positives = 163/221 (73%)
 Frame = +3

Query: 3   LLMDMCEQKLAPNLPFIKSLLLDWFEPFRDAIAAEQEICKKNNSKSSHAPFFNLLPADMM 182
           LL DMCEQKLAPNLP++KSL L WFEP RD IA EQE+C +  SK+++A +F  LPADMM
Sbjct: 207 LLFDMCEQKLAPNLPYVKSLFLGWFEPLRDKIAEEQELCSQGKSKAAYAKYFYQLPADMM 266

Query: 183 AVITMHKLMGLVMTNTGHGSVHLVHAACQIGDAIEQEVRIHRFLEXXXXXXXXXXXSEEV 362
           AVITMHKLMGL+MT   HG+  +V AA  IGDAIEQEVRIH FLE            +E 
Sbjct: 267 AVITMHKLMGLLMTGGDHGTARVVQAALVIGDAIEQEVRIHNFLEKTKKQKAEKDKQKE- 325

Query: 363 EGDSVMEDQTFLRKKVTTLMKKQKIRQLNMIVKRQDDSKPWGQAAQAMVGSRLIELLMNT 542
           +G+ V ++Q  LRKKVT LMKKQK+R +  IV+RQDDSKPWGQ A+A VGSRLI+LL+ T
Sbjct: 326 DGEHVTQEQEKLRKKVTNLMKKQKLRAVGQIVRRQDDSKPWGQDARAKVGSRLIDLLLQT 385

Query: 543 AYVQPPVSQSADAPPDIRPAFRHTRSTAGKEPKKLTRRYGV 665
           AY+QPP +Q A  PPDI PAF H+  T  KE K  +RRYG+
Sbjct: 386 AYIQPPANQLAVDPPDIPPAFVHSVRTVAKETKSASRRYGI 426


>emb|CAE52834.1| RNA polymerase [Hordeum vulgare]
          Length = 862

 Score =  270 bits (689), Expect = 4e-70
 Identities = 134/222 (60%), Positives = 165/222 (74%), Gaps = 1/222 (0%)
 Frame = +3

Query: 3   LLMDMCEQKLAPNLPFIKSLLLDWFEPFRDAIAAEQEICKKNNSKSSHAPFFNLLPADMM 182
           LL DMCE KLAPNLP++KSL L WFEP RD I AEQE+  +  +++SHAP+FN+LPADMM
Sbjct: 49  LLADMCEHKLAPNLPYVKSLFLGWFEPLRDQIIAEQELVGERGTRASHAPYFNMLPADMM 108

Query: 183 AVITMHKLMGLVMTNTGHGSVHLVHAACQIGDAIEQEVRIHRFLEXXXXXXXXXXXSEEV 362
           AVITMHKLMGL+MT +G GSV ++ AACQIG+A+E EVRIH+FLE               
Sbjct: 109 AVITMHKLMGLLMTGSGDGSVRVIQAACQIGEAVEHEVRIHKFLEKTKKKNTKEVDKVVE 168

Query: 363 EGDS-VMEDQTFLRKKVTTLMKKQKIRQLNMIVKRQDDSKPWGQAAQAMVGSRLIELLMN 539
            GDS + ++Q  LRKKVT LMKKQKIRQ+  +VK+QD ++PWGQ A A VGSRLIEL + 
Sbjct: 169 PGDSDIAKEQQLLRKKVTDLMKKQKIRQVRHLVKKQDSTRPWGQDAHAKVGSRLIELFIE 228

Query: 540 TAYVQPPVSQSADAPPDIRPAFRHTRSTAGKEPKKLTRRYGV 665
           TA++QPP SQS D+ P+IRPAF H   T  +E K  +RRYGV
Sbjct: 229 TAHIQPPASQSGDSTPEIRPAFTHEMRTVAREQK--SRRYGV 268


>gb|AAF32492.1|AF091838_1 single-subunit RNA polymerase G [Triticum aestivum]
          Length = 1005

 Score =  268 bits (686), Expect = 8e-70
 Identities = 134/223 (60%), Positives = 167/223 (74%), Gaps = 2/223 (0%)
 Frame = +3

Query: 3   LLMDMCEQKLAPNLPFIKSLLLDWFEPFRDAIAAEQEICKKNNSKSSHAPFFNLLPADMM 182
           LL DMCE KLAPNLP++KSL L WFEP RD I AEQE+  +  +++SHAP+FN+LPADMM
Sbjct: 191 LLADMCEHKLAPNLPYVKSLFLSWFEPLRDQIIAEQELVSERGTRASHAPYFNMLPADMM 250

Query: 183 AVITMHKLMGLVMTNTGHGSVHLVHAACQIGDAIEQEVRIHRFLEXXXXXXXXXXXS--E 356
           AVITMHKLMGL+MT +G GSV ++ AACQIG+A+E EVRIH+FLE              E
Sbjct: 251 AVITMHKLMGLLMTGSGDGSVRVIQAACQIGEAVEHEVRIHKFLEKTKKKNTKEVDKVVE 310

Query: 357 EVEGDSVMEDQTFLRKKVTTLMKKQKIRQLNMIVKRQDDSKPWGQAAQAMVGSRLIELLM 536
            V+ D + ++Q  LRKKVT LMKKQKIRQ+  +VK+QD ++PWGQ A A VGSRLIEL +
Sbjct: 311 AVDAD-IAKEQERLRKKVTDLMKKQKIRQVRHLVKKQDSTRPWGQDAHAKVGSRLIELFI 369

Query: 537 NTAYVQPPVSQSADAPPDIRPAFRHTRSTAGKEPKKLTRRYGV 665
            TA++QPP SQS D+ P+IRPAF H   T  +E +K +RRYGV
Sbjct: 370 ETAHIQPPASQSGDSTPEIRPAFTHEMRTVAREQRK-SRRYGV 411


>gb|EMT11393.1| DNA-directed RNA polymerase 2, chloroplastic/mitochondrial
           [Aegilops tauschii]
          Length = 884

 Score =  268 bits (684), Expect = 1e-69
 Identities = 134/223 (60%), Positives = 167/223 (74%), Gaps = 2/223 (0%)
 Frame = +3

Query: 3   LLMDMCEQKLAPNLPFIKSLLLDWFEPFRDAIAAEQEICKKNNSKSSHAPFFNLLPADMM 182
           LL DMCE KLAPNLP++KSL L WFEP RD I AEQE+  +  +++SHAP+FN+LPADMM
Sbjct: 116 LLADMCEHKLAPNLPYVKSLFLGWFEPLRDQIIAEQELVSQRGTRASHAPYFNMLPADMM 175

Query: 183 AVITMHKLMGLVMTNTGHGSVHLVHAACQIGDAIEQEVRIHRFLEXXXXXXXXXXXS--E 356
           AVITMHKLMGL+MT +G GSV ++ AACQIG+A+E EVRIH+FLE              E
Sbjct: 176 AVITMHKLMGLLMTGSGDGSVRVIQAACQIGEAVEHEVRIHKFLEKTKKKNTKEVDKVVE 235

Query: 357 EVEGDSVMEDQTFLRKKVTTLMKKQKIRQLNMIVKRQDDSKPWGQAAQAMVGSRLIELLM 536
            V+ D + ++Q  LRKKVT LMKKQKIRQ+  +VK+QD ++PWGQ A A VGSRLIEL +
Sbjct: 236 AVDAD-IAKEQERLRKKVTDLMKKQKIRQVRHLVKKQDSTRPWGQDAHAKVGSRLIELFI 294

Query: 537 NTAYVQPPVSQSADAPPDIRPAFRHTRSTAGKEPKKLTRRYGV 665
            TA++QPP SQS D+ P+IRPAF H   T  +E +K +RRYGV
Sbjct: 295 ETAHIQPPASQSGDSTPEIRPAFTHEMRTVAREQQK-SRRYGV 336


>gb|EMS47556.1| DNA-directed RNA polymerase 2, chloroplastic/mitochondrial
           [Triticum urartu]
          Length = 854

 Score =  268 bits (684), Expect = 1e-69
 Identities = 134/223 (60%), Positives = 167/223 (74%), Gaps = 2/223 (0%)
 Frame = +3

Query: 3   LLMDMCEQKLAPNLPFIKSLLLDWFEPFRDAIAAEQEICKKNNSKSSHAPFFNLLPADMM 182
           LL DMCE KLAPNLP++KSL L WFEP RD I AEQE+  +  +++SHAP+FN+LPADMM
Sbjct: 67  LLADMCEHKLAPNLPYVKSLFLGWFEPLRDQIIAEQELVSERGTRASHAPYFNMLPADMM 126

Query: 183 AVITMHKLMGLVMTNTGHGSVHLVHAACQIGDAIEQEVRIHRFLEXXXXXXXXXXXS--E 356
           AVITMHKLMGL+MT +G GSV ++ AACQIG+A+E EVRIH+FLE              E
Sbjct: 127 AVITMHKLMGLLMTGSGDGSVRVIQAACQIGEAVEHEVRIHKFLEKTKKKNTKEVDKVVE 186

Query: 357 EVEGDSVMEDQTFLRKKVTTLMKKQKIRQLNMIVKRQDDSKPWGQAAQAMVGSRLIELLM 536
            V+ D + ++Q  LRKKVT LMKKQKIRQ+  +VK+QD ++PWGQ A A VGSRLIEL +
Sbjct: 187 AVDAD-IAKEQERLRKKVTDLMKKQKIRQVRHLVKKQDSTRPWGQDAHAKVGSRLIELFI 245

Query: 537 NTAYVQPPVSQSADAPPDIRPAFRHTRSTAGKEPKKLTRRYGV 665
            TA++QPP SQS D+ P+IRPAF H   T  +E +K +RRYGV
Sbjct: 246 ETAHIQPPASQSGDSTPEIRPAFTHEMRTVAREQQK-SRRYGV 287