BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Zingiber24_contig00008627
         (333 letters)

Database: ./nr 
           37,332,560 sequences; 13,225,080,153 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

ref|NP_001062402.1| Os08g0543600 [Oryza sativa Japonica Group] g...    63   4e-08
gb|EEC83977.1| hypothetical protein OsI_30116 [Oryza sativa Indi...    61   1e-07
ref|XP_004974094.1| PREDICTED: mediator of RNA polymerase II tra...    56   4e-06
ref|XP_004974093.1| PREDICTED: mediator of RNA polymerase II tra...    56   4e-06
ref|XP_004974092.1| PREDICTED: mediator of RNA polymerase II tra...    56   4e-06
ref|XP_002444647.1| hypothetical protein SORBIDRAFT_07g025350 [S...    56   4e-06

>ref|NP_001062402.1| Os08g0543600 [Oryza sativa Japonica Group]
            gi|42407848|dbj|BAD08991.1| unknown protein [Oryza sativa
            Japonica Group] gi|42408545|dbj|BAD09723.1| unknown
            protein [Oryza sativa Japonica Group]
            gi|113624371|dbj|BAF24316.1| Os08g0543600 [Oryza sativa
            Japonica Group] gi|215694821|dbj|BAG90012.1| unnamed
            protein product [Oryza sativa Japonica Group]
          Length = 837

 Score = 63.2 bits (152), Expect = 4e-08
 Identities = 36/90 (40%), Positives = 53/90 (58%), Gaps = 1/90 (1%)
 Frame = -1

Query: 270  PRPNDARS-NLIQGLSNVTISNKLKNVQEANALPSGAKLGNVFVHSAVGNTSNLDRTNLS 94
            P+PND+   N++QG+ +VTI++K+K++QE N      + G   +H+   N    +R+ L 
Sbjct: 754  PKPNDSVGYNIVQGIGDVTIASKVKDIQE-NGFSDEVRPGQSSMHAVSANGVRQERSGLP 812

Query: 93   WQNKGTGNGRHSLGGKQLGRSSGSNMISRR 4
                  GN RH  GGKQ GRS+G   ISRR
Sbjct: 813  -----AGNTRHGYGGKQQGRSTGPAYISRR 837


>gb|EEC83977.1| hypothetical protein OsI_30116 [Oryza sativa Indica Group]
          Length = 837

 Score = 61.2 bits (147), Expect = 1e-07
 Identities = 35/90 (38%), Positives = 53/90 (58%), Gaps = 1/90 (1%)
 Frame = -1

Query: 270  PRPNDARS-NLIQGLSNVTISNKLKNVQEANALPSGAKLGNVFVHSAVGNTSNLDRTNLS 94
            P+PN++   N++QG+ +VTI++K+K++QE N      + G   +H+   N    +R+ L 
Sbjct: 754  PKPNNSVGYNIVQGIGDVTIASKVKDIQE-NGFSDEVRPGQSSMHAVSANGVRQERSGLP 812

Query: 93   WQNKGTGNGRHSLGGKQLGRSSGSNMISRR 4
                  GN RH  GGKQ GRS+G   ISRR
Sbjct: 813  -----AGNTRHGYGGKQQGRSTGPAYISRR 837


>ref|XP_004974094.1| PREDICTED: mediator of RNA polymerase II transcription subunit
           15-like isoform X3 [Setaria italica]
          Length = 795

 Score = 56.2 bits (134), Expect = 4e-06
 Identities = 34/81 (41%), Positives = 45/81 (55%)
 Frame = -1

Query: 246 NLIQGLSNVTISNKLKNVQEANALPSGAKLGNVFVHSAVGNTSNLDRTNLSWQNKGTGNG 67
           N+IQG+S+VTIS K++N Q+ N      + G   +H+A  N    D        KG  N 
Sbjct: 724 NIIQGVSDVTISGKVRNTQD-NGFSDEVRTGQPSMHTAAVNGVRHD--------KGASNI 774

Query: 66  RHSLGGKQLGRSSGSNMISRR 4
           RH  GGKQ GRS+G+   SRR
Sbjct: 775 RHGYGGKQQGRSTGTAYNSRR 795


>ref|XP_004974093.1| PREDICTED: mediator of RNA polymerase II transcription subunit
           15-like isoform X2 [Setaria italica]
          Length = 810

 Score = 56.2 bits (134), Expect = 4e-06
 Identities = 34/81 (41%), Positives = 45/81 (55%)
 Frame = -1

Query: 246 NLIQGLSNVTISNKLKNVQEANALPSGAKLGNVFVHSAVGNTSNLDRTNLSWQNKGTGNG 67
           N+IQG+S+VTIS K++N Q+ N      + G   +H+A  N    D        KG  N 
Sbjct: 739 NIIQGVSDVTISGKVRNTQD-NGFSDEVRTGQPSMHTAAVNGVRHD--------KGASNI 789

Query: 66  RHSLGGKQLGRSSGSNMISRR 4
           RH  GGKQ GRS+G+   SRR
Sbjct: 790 RHGYGGKQQGRSTGTAYNSRR 810


>ref|XP_004974092.1| PREDICTED: mediator of RNA polymerase II transcription subunit
           15-like isoform X1 [Setaria italica]
          Length = 814

 Score = 56.2 bits (134), Expect = 4e-06
 Identities = 34/81 (41%), Positives = 45/81 (55%)
 Frame = -1

Query: 246 NLIQGLSNVTISNKLKNVQEANALPSGAKLGNVFVHSAVGNTSNLDRTNLSWQNKGTGNG 67
           N+IQG+S+VTIS K++N Q+ N      + G   +H+A  N    D        KG  N 
Sbjct: 743 NIIQGVSDVTISGKVRNTQD-NGFSDEVRTGQPSMHTAAVNGVRHD--------KGASNI 793

Query: 66  RHSLGGKQLGRSSGSNMISRR 4
           RH  GGKQ GRS+G+   SRR
Sbjct: 794 RHGYGGKQQGRSTGTAYNSRR 814


>ref|XP_002444647.1| hypothetical protein SORBIDRAFT_07g025350 [Sorghum bicolor]
           gi|241940997|gb|EES14142.1| hypothetical protein
           SORBIDRAFT_07g025350 [Sorghum bicolor]
          Length = 806

 Score = 56.2 bits (134), Expect = 4e-06
 Identities = 33/81 (40%), Positives = 46/81 (56%)
 Frame = -1

Query: 246 NLIQGLSNVTISNKLKNVQEANALPSGAKLGNVFVHSAVGNTSNLDRTNLSWQNKGTGNG 67
           N+IQG+S+VTIS K++N Q+ N      + G   + +A  N +  D        KG  N 
Sbjct: 735 NIIQGVSDVTISGKVRNTQD-NGFLDEVRTGQPSMVTAAANGARHD--------KGANNI 785

Query: 66  RHSLGGKQLGRSSGSNMISRR 4
           RH  GGKQ GRS+G+  +SRR
Sbjct: 786 RHGYGGKQQGRSTGTTYLSRR 806