BLASTX nr result
ID: Zingiber24_contig00008428
seq
BLASTX 2.2.25 [Feb-01-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= Zingiber24_contig00008428
(389 letters)
Database: ./nr
37,332,560 sequences; 13,225,080,153 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
ref|XP_002525676.1| transcription initiation factor brf1, putati... 74 3e-11
ref|XP_006479195.1| PREDICTED: transcription factor IIIB 90 kDa ... 72 8e-11
ref|XP_006443522.1| hypothetical protein CICLE_v10019321mg [Citr... 72 8e-11
ref|XP_006443520.1| hypothetical protein CICLE_v10019321mg [Citr... 72 8e-11
ref|XP_006369550.1| hypothetical protein POPTR_0001s25330g [Popu... 70 4e-10
emb|CBI31214.3| unnamed protein product [Vitis vinifera] 69 6e-10
gb|EOY10448.1| Cyclin/Brf1-like TBP-binding protein, putative is... 69 8e-10
ref|XP_004229719.1| PREDICTED: transcription factor IIIB 90 kDa ... 68 1e-09
ref|XP_006443519.1| hypothetical protein CICLE_v10019321mg [Citr... 67 2e-09
ref|XP_004296706.1| PREDICTED: transcription factor IIIB 90 kDa ... 66 4e-09
ref|XP_006354652.1| PREDICTED: transcription factor IIIB 90 kDa ... 65 9e-09
ref|NP_187547.2| Cyclin/Brf1-like TBP-binding protein [Arabidops... 65 1e-08
gb|AAF14044.1|AC011436_28 putative transcription factor [Arabido... 65 1e-08
ref|XP_006297259.1| hypothetical protein CARUB_v10013272mg [Caps... 64 2e-08
ref|XP_002882615.1| RNA polymerase II transcription factor [Arab... 64 2e-08
ref|XP_006392930.1| hypothetical protein EUTSA_v10011362mg [Eutr... 64 3e-08
ref|XP_004157302.1| PREDICTED: transcription factor IIIB 60 kDa ... 64 3e-08
ref|XP_004135795.1| PREDICTED: transcription factor IIIB 60 kDa ... 64 3e-08
ref|XP_006826322.1| hypothetical protein AMTR_s00004p00092300 [A... 63 4e-08
gb|EXC18103.1| Transcription factor IIIB 90 kDa subunit [Morus n... 62 1e-07
>ref|XP_002525676.1| transcription initiation factor brf1, putative [Ricinus communis]
gi|223534976|gb|EEF36659.1| transcription initiation
factor brf1, putative [Ricinus communis]
Length = 625
Score = 73.6 bits (179), Expect = 3e-11
Identities = 41/95 (43%), Positives = 54/95 (56%)
Frame = +3
Query: 6 AALVKSKKEKKQRRIAEVKNMIPARTPLEAVRRMLMKKTFSAKVNYEALETMFSSEQNHA 185
AAL KSKKEK+Q+R AE KN +PA++ EA R+ML KK S+K+NY+ LE +F +
Sbjct: 493 AALAKSKKEKQQKRAAEAKNSVPAQSASEAARQMLTKKRLSSKINYDVLEKLFDEPGSKD 552
Query: 186 KKQKVELDVGDPHETLDKKDDHADILDNKDDDGPG 290
K+ D E + D D DD GPG
Sbjct: 553 PKKLRTESESDTDEKFPQTD------DRNDDLGPG 581
>ref|XP_006479195.1| PREDICTED: transcription factor IIIB 90 kDa subunit-like isoform X2
[Citrus sinensis]
Length = 618
Score = 72.0 bits (175), Expect = 8e-11
Identities = 41/95 (43%), Positives = 56/95 (58%), Gaps = 4/95 (4%)
Frame = +3
Query: 6 AALVKSKKEKKQRRIAEVKNMIPARTPLEAVRRMLMKKTFSAKVNYEALETMF----SSE 173
AA+ KS+KEK+Q+R AE KN PA+T LEA RRML KK S+K+NY+ LE +F +SE
Sbjct: 489 AAVAKSRKEKQQKRAAEAKNSGPAQTALEATRRMLTKKRLSSKINYDVLEKLFDDSVTSE 548
Query: 174 QNHAKKQKVELDVGDPHETLDKKDDHADILDNKDD 278
K+ D D KK+ ++ L + D
Sbjct: 549 NPKKKRTDSHSDYDDKFPNNGKKEHESEDLGPEGD 583
>ref|XP_006443522.1| hypothetical protein CICLE_v10019321mg [Citrus clementina]
gi|568851023|ref|XP_006479194.1| PREDICTED:
transcription factor IIIB 90 kDa subunit-like isoform X1
[Citrus sinensis] gi|557545784|gb|ESR56762.1|
hypothetical protein CICLE_v10019321mg [Citrus
clementina]
Length = 620
Score = 72.0 bits (175), Expect = 8e-11
Identities = 41/95 (43%), Positives = 56/95 (58%), Gaps = 4/95 (4%)
Frame = +3
Query: 6 AALVKSKKEKKQRRIAEVKNMIPARTPLEAVRRMLMKKTFSAKVNYEALETMF----SSE 173
AA+ KS+KEK+Q+R AE KN PA+T LEA RRML KK S+K+NY+ LE +F +SE
Sbjct: 491 AAVAKSRKEKQQKRAAEAKNSGPAQTALEATRRMLTKKRLSSKINYDVLEKLFDDSVTSE 550
Query: 174 QNHAKKQKVELDVGDPHETLDKKDDHADILDNKDD 278
K+ D D KK+ ++ L + D
Sbjct: 551 NPKKKRTDSHSDYDDKFPNNGKKEHESEDLGPEGD 585
>ref|XP_006443520.1| hypothetical protein CICLE_v10019321mg [Citrus clementina]
gi|567902066|ref|XP_006443521.1| hypothetical protein
CICLE_v10019321mg [Citrus clementina]
gi|557545782|gb|ESR56760.1| hypothetical protein
CICLE_v10019321mg [Citrus clementina]
gi|557545783|gb|ESR56761.1| hypothetical protein
CICLE_v10019321mg [Citrus clementina]
Length = 543
Score = 72.0 bits (175), Expect = 8e-11
Identities = 41/95 (43%), Positives = 56/95 (58%), Gaps = 4/95 (4%)
Frame = +3
Query: 6 AALVKSKKEKKQRRIAEVKNMIPARTPLEAVRRMLMKKTFSAKVNYEALETMF----SSE 173
AA+ KS+KEK+Q+R AE KN PA+T LEA RRML KK S+K+NY+ LE +F +SE
Sbjct: 414 AAVAKSRKEKQQKRAAEAKNSGPAQTALEATRRMLTKKRLSSKINYDVLEKLFDDSVTSE 473
Query: 174 QNHAKKQKVELDVGDPHETLDKKDDHADILDNKDD 278
K+ D D KK+ ++ L + D
Sbjct: 474 NPKKKRTDSHSDYDDKFPNNGKKEHESEDLGPEGD 508
>ref|XP_006369550.1| hypothetical protein POPTR_0001s25330g [Populus trichocarpa]
gi|550348149|gb|ERP66119.1| hypothetical protein
POPTR_0001s25330g [Populus trichocarpa]
Length = 508
Score = 69.7 bits (169), Expect = 4e-10
Identities = 38/96 (39%), Positives = 54/96 (56%), Gaps = 1/96 (1%)
Frame = +3
Query: 6 AALVKSKKEKKQRRIAEVKNMIPARTPLEAVRRMLMKKTFSAKVNYEALETMFSS-EQNH 182
A L KSKKE +Q+R AE +N +PA++ EAV RML KK S+K+NY+ LE +F E
Sbjct: 380 ADLAKSKKEMQQKRAAEARNSVPAKSAAEAVHRMLTKKRISSKINYDVLEKLFEEPEAKD 439
Query: 183 AKKQKVELDVGDPHETLDKKDDHADILDNKDDDGPG 290
AK+ + E + L + D ++DG G
Sbjct: 440 AKRPRTESHPDPVEKVLHTDGKDHKLEDTNENDGLG 475
>emb|CBI31214.3| unnamed protein product [Vitis vinifera]
Length = 622
Score = 68.9 bits (167), Expect = 6e-10
Identities = 35/89 (39%), Positives = 53/89 (59%)
Frame = +3
Query: 6 AALVKSKKEKKQRRIAEVKNMIPARTPLEAVRRMLMKKTFSAKVNYEALETMFSSEQNHA 185
AA+ KS+KE++Q+R AE KN +PA+T EA R+ML KK S+K+NY+ LE +F
Sbjct: 494 AAVAKSRKERQQKRAAEAKNTVPAQTAAEATRQMLTKKRLSSKINYDVLEKLFDDSVPSE 553
Query: 186 KKQKVELDVGDPHETLDKKDDHADILDNK 272
+K+ E+ + +DH + NK
Sbjct: 554 NPKKIRT------ESQTENNDHKAPISNK 576
>gb|EOY10448.1| Cyclin/Brf1-like TBP-binding protein, putative isoform 1 [Theobroma
cacao]
Length = 605
Score = 68.6 bits (166), Expect = 8e-10
Identities = 40/102 (39%), Positives = 59/102 (57%), Gaps = 7/102 (6%)
Frame = +3
Query: 6 AALVKSKKEKKQRRIAEVKNMIPARTPLEAVRRMLMKKTFSAKVNYEALETMFS---SEQ 176
A + KS+KE++Q+R AE KN P +T EA RRML +K S+K+NY+ALE +F +
Sbjct: 479 AVVAKSRKERQQKRAAEAKNSGPPQTAAEATRRMLARKRLSSKINYDALEKLFDEPVASS 538
Query: 177 NHAKKQKVELDVGDPHETLDK----KDDHADILDNKDDDGPG 290
KKQK E + + + K + D AD ++ + DG G
Sbjct: 539 EKPKKQKNESHSDEKEDKVSKIGKEEGDLADEYNDVEGDGGG 580
>ref|XP_004229719.1| PREDICTED: transcription factor IIIB 90 kDa subunit-like [Solanum
lycopersicum]
Length = 615
Score = 68.2 bits (165), Expect = 1e-09
Identities = 39/92 (42%), Positives = 56/92 (60%), Gaps = 1/92 (1%)
Frame = +3
Query: 6 AALVKSKKEKKQRRIAEVKNMIPARTPLEAVRRMLMKKTFSAKVNYEALETMF-SSEQNH 182
A++ KSKKEK+Q+R AE+KN PA+T EA ++ML KK S K+NY+ LE +F S +
Sbjct: 499 ASVAKSKKEKQQKRAAELKNTGPAQTAAEATKQMLAKKRLSNKINYDVLEKLFDDSAPEN 558
Query: 183 AKKQKVELDVGDPHETLDKKDDHADILDNKDD 278
KK + D D + K D ++ +N DD
Sbjct: 559 PKKARTAYDSTDDYGVKSDKID-PEVDENYDD 589
>ref|XP_006443519.1| hypothetical protein CICLE_v10019321mg [Citrus clementina]
gi|557545781|gb|ESR56759.1| hypothetical protein
CICLE_v10019321mg [Citrus clementina]
Length = 567
Score = 67.0 bits (162), Expect = 2e-09
Identities = 32/53 (60%), Positives = 41/53 (77%)
Frame = +3
Query: 6 AALVKSKKEKKQRRIAEVKNMIPARTPLEAVRRMLMKKTFSAKVNYEALETMF 164
AA+ KS+KEK+Q+R AE KN PA+T LEA RRML KK S+K+NY+ LE +F
Sbjct: 491 AAVAKSRKEKQQKRAAEAKNSGPAQTALEATRRMLTKKRLSSKINYDVLEKLF 543
>ref|XP_004296706.1| PREDICTED: transcription factor IIIB 90 kDa subunit-like [Fragaria
vesca subsp. vesca]
Length = 620
Score = 66.2 bits (160), Expect = 4e-09
Identities = 39/99 (39%), Positives = 61/99 (61%), Gaps = 6/99 (6%)
Frame = +3
Query: 3 DAALVKSKKEKKQRRIAEVKNMIPARTPLEAVRRMLMKKTFSAKVNYEALETMFSSEQ-- 176
+AA+ K KKE++ R AE KN PA+T EAV +ML KK S+K+N++ LE MF + +
Sbjct: 489 EAAVAKRKKERQLARAAEAKNSTPAQTAAEAVHQMLTKKRLSSKINFDVLEDMFETSEGP 548
Query: 177 NHAKKQKVELDVGD----PHETLDKKDDHADILDNKDDD 281
+ +KK+K++ + + PH++ + K D KDDD
Sbjct: 549 DVSKKRKIDSHLDNDNKMPHDSEELKYD-----AYKDDD 582
>ref|XP_006354652.1| PREDICTED: transcription factor IIIB 90 kDa subunit-like [Solanum
tuberosum]
Length = 615
Score = 65.1 bits (157), Expect = 9e-09
Identities = 36/82 (43%), Positives = 50/82 (60%), Gaps = 1/82 (1%)
Frame = +3
Query: 6 AALVKSKKEKKQRRIAEVKNMIPARTPLEAVRRMLMKKTFSAKVNYEALETMF-SSEQNH 182
A++ KSKKEK+Q+R AE+KN PA+T EA ++ML KK S K+NY+ LE +F S +
Sbjct: 499 ASVAKSKKEKQQKRAAELKNTGPAQTAAEATKQMLAKKRLSNKINYDVLEKLFDDSLPEN 558
Query: 183 AKKQKVELDVGDPHETLDKKDD 248
KK + D D + K D
Sbjct: 559 PKKARTAYDSTDDYGVKSDKID 580
>ref|NP_187547.2| Cyclin/Brf1-like TBP-binding protein [Arabidopsis thaliana]
gi|110741698|dbj|BAE98795.1| putative transcription
factor [Arabidopsis thaliana]
gi|332641235|gb|AEE74756.1| Cyclin/Brf1-like TBP-binding
protein [Arabidopsis thaliana]
Length = 604
Score = 64.7 bits (156), Expect = 1e-08
Identities = 36/95 (37%), Positives = 56/95 (58%), Gaps = 3/95 (3%)
Frame = +3
Query: 6 AALVKSKKEKKQRRIAEVKNMIPARTPLEAVRRMLMKKTFSAKVNYEALETMF--SSEQN 179
A KS+KEK+Q++ E KN P T +EAVRR L KK S+ +NY+ LE++F S+ +
Sbjct: 469 ADAAKSRKEKQQKKAEEAKNAAPPATAVEAVRRTLDKKRLSSVINYDVLESLFDTSAPEK 528
Query: 180 HAKKQKVELDV-GDPHETLDKKDDHADILDNKDDD 281
K+ K E D+ E + K + + +N+D+D
Sbjct: 529 SPKRSKTETDIEKKKEENKEMKSNEHENGENEDED 563
>gb|AAF14044.1|AC011436_28 putative transcription factor [Arabidopsis thaliana]
Length = 600
Score = 64.7 bits (156), Expect = 1e-08
Identities = 36/95 (37%), Positives = 56/95 (58%), Gaps = 3/95 (3%)
Frame = +3
Query: 6 AALVKSKKEKKQRRIAEVKNMIPARTPLEAVRRMLMKKTFSAKVNYEALETMF--SSEQN 179
A KS+KEK+Q++ E KN P T +EAVRR L KK S+ +NY+ LE++F S+ +
Sbjct: 465 ADAAKSRKEKQQKKAEEAKNAAPPATAVEAVRRTLDKKRLSSVINYDVLESLFDTSAPEK 524
Query: 180 HAKKQKVELDV-GDPHETLDKKDDHADILDNKDDD 281
K+ K E D+ E + K + + +N+D+D
Sbjct: 525 SPKRSKTETDIEKKKEENKEMKSNEHENGENEDED 559
>ref|XP_006297259.1| hypothetical protein CARUB_v10013272mg [Capsella rubella]
gi|482565968|gb|EOA30157.1| hypothetical protein
CARUB_v10013272mg [Capsella rubella]
Length = 600
Score = 64.3 bits (155), Expect = 2e-08
Identities = 32/95 (33%), Positives = 55/95 (57%)
Frame = +3
Query: 6 AALVKSKKEKKQRRIAEVKNMIPARTPLEAVRRMLMKKTFSAKVNYEALETMFSSEQNHA 185
A+ +S+KEK+Q++ E KN P T +EAVRR L+KK + +NY+ LE +F +
Sbjct: 469 ASKKQSRKEKQQKKAEEEKNAAPPATAMEAVRRTLVKKRLTTVINYDVLEELFDTSAGEN 528
Query: 186 KKQKVELDVGDPHETLDKKDDHADILDNKDDDGPG 290
+K + + G E ++K + +I +N+D+ G
Sbjct: 529 LPKKSKTEAGMEKEKKEEKSNEPEIGENEDEAEEG 563
>ref|XP_002882615.1| RNA polymerase II transcription factor [Arabidopsis lyrata subsp.
lyrata] gi|297328455|gb|EFH58874.1| RNA polymerase II
transcription factor [Arabidopsis lyrata subsp. lyrata]
Length = 600
Score = 63.9 bits (154), Expect = 2e-08
Identities = 34/94 (36%), Positives = 51/94 (54%), Gaps = 2/94 (2%)
Frame = +3
Query: 6 AALVKSKKEKKQRRIAEVKNMIPARTPLEAVRRMLMKKTFSAKVNYEALETMF--SSEQN 179
A KS+KEK+Q++ E KN P T +EAVRR L KK S +NY+ LE +F S+ +
Sbjct: 469 ADAAKSRKEKQQKKAEEAKNAAPPATAMEAVRRTLEKKRLSLVINYDVLEELFDTSTAEK 528
Query: 180 HAKKQKVELDVGDPHETLDKKDDHADILDNKDDD 281
K+ K E D+ E + + + D ++D
Sbjct: 529 SPKRSKTETDIEKKKEVKSNEHEKGENEDEAEED 562
>ref|XP_006392930.1| hypothetical protein EUTSA_v10011362mg [Eutrema salsugineum]
gi|557089508|gb|ESQ30216.1| hypothetical protein
EUTSA_v10011362mg [Eutrema salsugineum]
Length = 554
Score = 63.5 bits (153), Expect = 3e-08
Identities = 35/91 (38%), Positives = 55/91 (60%), Gaps = 2/91 (2%)
Frame = +3
Query: 6 AALVKSKKEKKQRRIAEVKNMIPARTPLEAVRRMLMKKTFSAKVNYEALETMF--SSEQN 179
AA+ KS+KEK+Q+R E KN P T +EAV RML KK S +NY+ LE +F S +
Sbjct: 459 AAVTKSRKEKQQKRAEEAKNAPPPATAMEAVGRMLEKKRLSGLINYDLLEELFDTSPVEE 518
Query: 180 HAKKQKVELDVGDPHETLDKKDDHADILDNK 272
K+ +++ D+ + + + K ++H D D +
Sbjct: 519 SPKRSRIKTDMEEKKKEV-KSNEHEDDSDEE 548
>ref|XP_004157302.1| PREDICTED: transcription factor IIIB 60 kDa subunit-like [Cucumis
sativus]
Length = 663
Score = 63.5 bits (153), Expect = 3e-08
Identities = 34/97 (35%), Positives = 57/97 (58%), Gaps = 2/97 (2%)
Frame = +3
Query: 6 AALVKSKKEKKQRRIAEVKNMIPARTPLEAVRRMLMKKTFSAKVNYEALETMF--SSEQN 179
AA+ KS+KE++++R AE KN PA+T EA R+ML KK S+K+NY+ L+ +F S+
Sbjct: 537 AAVAKSRKERQRKRAAEAKNATPAQTAAEATRQMLNKKRLSSKINYDVLDKLFDESAGME 596
Query: 180 HAKKQKVELDVGDPHETLDKKDDHADILDNKDDDGPG 290
+ K+K E + +T + + + ++D G
Sbjct: 597 PSAKKKCEEQAEETEKTRNTTKEFETTEEQEEDYDDG 633
>ref|XP_004135795.1| PREDICTED: transcription factor IIIB 60 kDa subunit-like [Cucumis
sativus]
Length = 643
Score = 63.5 bits (153), Expect = 3e-08
Identities = 34/97 (35%), Positives = 57/97 (58%), Gaps = 2/97 (2%)
Frame = +3
Query: 6 AALVKSKKEKKQRRIAEVKNMIPARTPLEAVRRMLMKKTFSAKVNYEALETMF--SSEQN 179
AA+ KS+KE++++R AE KN PA+T EA R+ML KK S+K+NY+ L+ +F S+
Sbjct: 537 AAVAKSRKERQRKRAAEAKNATPAQTAAEATRQMLNKKRLSSKINYDVLDKLFDESAGME 596
Query: 180 HAKKQKVELDVGDPHETLDKKDDHADILDNKDDDGPG 290
+ K+K E + +T + + + ++D G
Sbjct: 597 PSAKKKCEEQAEETEKTRNTTKEFETTEEQEEDYDDG 633
>ref|XP_006826322.1| hypothetical protein AMTR_s00004p00092300 [Amborella trichopoda]
gi|548830636|gb|ERM93559.1| hypothetical protein
AMTR_s00004p00092300 [Amborella trichopoda]
Length = 737
Score = 63.2 bits (152), Expect = 4e-08
Identities = 35/95 (36%), Positives = 50/95 (52%), Gaps = 3/95 (3%)
Frame = +3
Query: 6 AALVKSKKEKKQRRIAEVKNMIPARTPLEAVRRMLMKKTFSAKVNYEALETMFSSE---Q 176
AA+ K KK+K+Q+R E +N PA+T EA R+ML KK S+K+NYE L +F E +
Sbjct: 555 AAIAKMKKDKQQKRAEEARNATPAQTAAEATRQMLTKKKISSKINYEVLNKLFDEETPAK 614
Query: 177 NHAKKQKVELDVGDPHETLDKKDDHADILDNKDDD 281
+ K Q + + + K H D K D
Sbjct: 615 DEGKTQDGDAEEVPSSKRQRTKSSHGDSRAQKTKD 649
>gb|EXC18103.1| Transcription factor IIIB 90 kDa subunit [Morus notabilis]
Length = 517
Score = 61.6 bits (148), Expect = 1e-07
Identities = 36/94 (38%), Positives = 52/94 (55%), Gaps = 4/94 (4%)
Frame = +3
Query: 15 VKSKKEKKQRRIAEVKNMIPARTPLEAVRRMLMKKTFSAKVNYEALETMFSSEQNHAKKQ 194
+ + K +K+RR + N PA+T EA R+ML KK FS+K+NYEALE FS + KK
Sbjct: 387 LSAPKPRKERRQKQDPNAPPAQTAAEAARQMLSKKRFSSKINYEALEKCFSGDVGPNKKA 446
Query: 195 KVELDVGDPHETLDK----KDDHADILDNKDDDG 284
KV D + K + +D +D +D+ G
Sbjct: 447 KVSGQDDDEDDGSGKGPGGNEKKSDFVDKEDEIG 480