BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Zingiber24_contig00005633
         (1586 letters)

Database: ./nr 
           37,332,560 sequences; 13,225,080,153 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gb|ESW31915.1| hypothetical protein PHAVU_002G278900g [Phaseolus...   204   7e-50
gb|AGC24022.1| coat protein, partial [Rhabdovirus YHG-2013]           156   2e-35
gb|AFK43045.1| unknown [Lotus japonicus]                              144   1e-31
gb|ESW31914.1| hypothetical protein PHAVU_002G278800g [Phaseolus...   143   2e-31
gb|ADE61669.1| nucleocapsid protein [Northern cereal mosaic virus]     85   8e-14
ref|NP_057954.1| nucleocapsid protein [Northern cereal mosaic vi...    84   1e-13
ref|YP_002308371.1| N protein [Lettuce yellow mottle virus] gi|1...    74   1e-10
emb|CAG34087.1| nucleocapsid protein [Lettuce necrotic yellows v...    74   2e-10
gb|AAU12861.1| coat protein [Lettuce big-vein associated virus]        73   3e-10
ref|YP_006576501.2| nucleocapsid protein [Persimmon virus A] gi|...    72   5e-10
ref|YP_425087.1| nucleocapsid protein [Lettuce necrotic yellows ...    72   5e-10
emb|CAG34090.1| nucleocapsid protein [Lettuce necrotic yellows v...    72   5e-10
emb|CAG34086.1| nucleocapsid protein [Lettuce necrotic yellows v...    72   5e-10
emb|CAG34083.1| nucleocapsid protein [Lettuce necrotic yellows v...    72   5e-10
emb|CAG34089.1| nucleocapsid protein [Lettuce necrotic yellows v...    72   5e-10
emb|CAG34088.1| nucleocapsid protein [Lettuce necrotic yellows v...    72   5e-10
emb|CAG34082.1| nucleocapsid protein [Lettuce necrotic yellows v...    72   5e-10
gb|AAU12860.1| coat protein [Lettuce big-vein associated virus]        72   7e-10
gb|AAQ77394.1| coat protein [Lettuce big-vein associated virus]        72   7e-10
gb|AAU12862.1| coat protein [Lettuce big-vein associated virus]        71   1e-09

>gb|ESW31915.1| hypothetical protein PHAVU_002G278900g [Phaseolus vulgaris]
            gi|561033337|gb|ESW31916.1| hypothetical protein
            PHAVU_002G278900g [Phaseolus vulgaris]
          Length = 268

 Score =  204 bits (520), Expect = 7e-50
 Identities = 106/257 (41%), Positives = 154/257 (59%)
 Frame = +1

Query: 583  SIADERYDEYPEEMISRQGPFEPITATVDVEEESAVYSYLACSMLRLFTKPVANYIKAWN 762
            S+ D  YD  PE   +      P+  T +  EE+  YSYLA S+LRLF     NYI A+N
Sbjct: 7    SLEDISYDSLPERFPTTNRAHAPMPNTNNNAEEARAYSYLASSLLRLFRTNEDNYIGAFN 66

Query: 763  RITAGYAKFYRKQAGMRLPTPTEESMRGLSNWFAVDPRAKVTLYRILWLGNSTEEYMGFK 942
             I  GY++FY +Q  +  P PT E +R LS++F+     K TL+RIL+ G  T++  G +
Sbjct: 67   HIVTGYSRFYNRQMPIFPPQPTVEGIRTLSHYFSHCGVFKATLFRILYCGGGTKKAEGLR 126

Query: 943  KFLYDMHLTYTGMHIVDILLQLCEQLNCSPGGVLALINCRETERQVQCLTHLLKILADTG 1122
             FLY+ HL+ TGMHI  I   L ++LNC P  +L+ +  +E E+Q+ CL  +L++   + 
Sbjct: 127  SFLYENHLSNTGMHIWSIFGSLVDKLNCKPAVILSALQKKEYEQQLSCLETMLELAERSD 186

Query: 1123 ECHKKRMWRYGRIFDETFMADLQTKACPKLVYIMASALQMVAPERHSGILKIAQLADVSE 1302
              HK+RMWRYGR+FDE+FM  LQTK C  L YI+ASAL+ + P  +  IL IAQ  D+S 
Sbjct: 187  GLHKRRMWRYGRLFDESFMLPLQTKHCRGLAYILASALKRIEPLSNQNILNIAQFKDLSM 246

Query: 1303 ENKKKCKVAAKQMLQSI 1353
            E +       + +++ +
Sbjct: 247  EKRNYLAAVGENLIKYV 263


>gb|AGC24022.1| coat protein, partial [Rhabdovirus YHG-2013]
          Length = 306

 Score =  156 bits (395), Expect = 2e-35
 Identities = 98/296 (33%), Positives = 148/296 (50%), Gaps = 4/296 (1%)
 Frame = +1

Query: 244  DPIEERINKYLQKPIVLPEIPEEFAKFDSITADLRPV----KYDFPDNALAGQAGITLER 411
            DP+     K  +  +  PEIP           D R +    K DF D+    Q G  + +
Sbjct: 7    DPLALLRAKLERLRLETPEIPVANLGLFKDVPDFRELLDEEKKDFRDDEYLEQEGFYIYK 66

Query: 412  HTVEEVAILGRKVIPMISSGFSKRGVAALFPLAYNLKAPRVNSTGEYVFPDVERIITSIA 591
              ++ +A LGR V+PM+S GF+  G+  LF LAYNL+ P  +  G  +F D++    ++ 
Sbjct: 67   SDLDSLAQLGRAVMPMLSHGFNTHGIVGLFRLAYNLRVPNTSGEG-MIFEDMDPD-HALY 124

Query: 592  DERYDEYPEEMISRQGPFEPITATVDVEEESAVYSYLACSMLRLFTKPVANYIKAWNRIT 771
            D   +  P    S + P      T+D  +E+  Y Y+A S LRLF KPV NY+ AW+ I 
Sbjct: 125  DITGEYVPNVQHSGRAPPAAYEPTIDPAKEAMFYCYIAASTLRLFKKPVENYVHAWDSIV 184

Query: 772  AGYAKFYRKQAGMRLPTPTEESMRGLSNWFAVDPRAKVTLYRILWLGNSTEEYMGFKKFL 951
              +  FY       +  PT +S+ GL   F+ D R ++TLY+IL+     +   G ++FL
Sbjct: 185  NKFNSFYGFVPPRAIMPPTIQSLTGLHAAFSSDTRMRMTLYKILYHAKRDQSLDGLRRFL 244

Query: 952  YDMHLTYTGMHIVDILLQLCEQLNCSPGGVLALINCRETERQVQCLTHLLKILADT 1119
            Y+MHLT TG+H V I   L   LN   G +L  ++    ERQ + L  + ++   T
Sbjct: 245  YEMHLTNTGVHAVGIFANLVSILNMESGYILKTMHTAMFERQFEALKRMNRMATST 300


>gb|AFK43045.1| unknown [Lotus japonicus]
          Length = 166

 Score =  144 bits (363), Expect = 1e-31
 Identities = 67/159 (42%), Positives = 107/159 (67%)
 Frame = +1

Query: 880  KVTLYRILWLGNSTEEYMGFKKFLYDMHLTYTGMHIVDILLQLCEQLNCSPGGVLALINC 1059
            KVTL+++L+  +S    +G K+FLYD+HL   G+H+V+I ++LC+ LN     ++ ++N 
Sbjct: 5    KVTLFKLLYASSSNNRALGLKRFLYDLHLANPGLHVVNISIRLCKVLNVPGQKLIDIMNV 64

Query: 1060 RETERQVQCLTHLLKILADTGECHKKRMWRYGRIFDETFMADLQTKACPKLVYIMASALQ 1239
             E  RQ   L  +++++    + HK++MWR+GRIFD TFMA+LQTKAC KLVYI+A AL+
Sbjct: 65   GEFRRQAVALAEMIRLVVIKADDHKRKMWRFGRIFDSTFMAELQTKACSKLVYILAYALK 124

Query: 1240 MVAPERHSGILKIAQLADVSEENKKKCKVAAKQMLQSIK 1356
               P  +  IL I QL + S + K K   AA+++++S++
Sbjct: 125  SEQPHGNENILDIVQLQNFSPDMKHKLSAAAQKVIKSLR 163


>gb|ESW31914.1| hypothetical protein PHAVU_002G278800g [Phaseolus vulgaris]
          Length = 224

 Score =  143 bits (360), Expect = 2e-31
 Identities = 84/203 (41%), Positives = 118/203 (58%)
 Frame = +1

Query: 361 DFPDNALAGQAGITLERHTVEEVAILGRKVIPMISSGFSKRGVAALFPLAYNLKAPRVNS 540
           DF DN+  G+  I L+R   + +A LGRK IPM+ SGFS+R   A+F LAY LK    ++
Sbjct: 26  DFLDNSHLGKTAILLDRCDDKFIARLGRKTIPMMVSGFSQRAAGAIFVLAYALKD---SA 82

Query: 541 TGEYVFPDVERIITSIADERYDEYPEEMISRQGPFEPITATVDVEEESAVYSYLACSMLR 720
            G+YVF D+      + D  Y+E P +M +      P+    +  EE+  YSYLA S+LR
Sbjct: 83  DGDYVF-DMPAEALLLEDILYEELPNKMPATNRAHAPMPKMNNNAEEAQAYSYLAASLLR 141

Query: 721 LFTKPVANYIKAWNRITAGYAKFYRKQAGMRLPTPTEESMRGLSNWFAVDPRAKVTLYRI 900
           LF     NYI A+N I   Y++FY KQ  +  P PT E +R LSN+F+ D   K TL+RI
Sbjct: 142 LFRTNEDNYIGAFNHIVTEYSRFYNKQMPIAPPQPTLEGIRTLSNYFSGDSVFKTTLFRI 201

Query: 901 LWLGNSTEEYMGFKKFLYDMHLT 969
           L+ G   ++    + FLY+ HL+
Sbjct: 202 LYCGGGIKKAKRLRSFLYESHLS 224


>gb|ADE61669.1| nucleocapsid protein [Northern cereal mosaic virus]
          Length = 431

 Score = 85.1 bits (209), Expect = 8e-14
 Identities = 47/186 (25%), Positives = 88/186 (47%), Gaps = 4/186 (2%)
 Frame = +1

Query: 694  SYLACSMLRLFTKPVANYIKAWNRITAGYAKFYRKQAGMRLPTPTEESMRGLSNWFAVDP 873
            S+++  +++L  K  +N +  WN +   Y  FY +     +P P  + + GL N+   DP
Sbjct: 169  SFISAFLMKLIVKQQSNVVDGWNGMLERYTNFYGESPITAVPKPNADWLAGLKNYLISDP 228

Query: 874  RAKVTLYRILWLGNST----EEYMGFKKFLYDMHLTYTGMHIVDILLQLCEQLNCSPGGV 1041
            +   T  R++    +     ++     ++L  + L+ TGMH   + L++ +Q N     +
Sbjct: 229  KIGHTWVRVISAAENALSVGDKSFQMVRYLASLPLSLTGMHAYKLFLEVQKQSNLGMQWL 288

Query: 1042 LALINCRETERQVQCLTHLLKILADTGECHKKRMWRYGRIFDETFMADLQTKACPKLVYI 1221
            L  +   +T   ++ +  +LK         K   +RY RI    +  +LQTK CP+LVY+
Sbjct: 289  LEEMVSPKTLPALEGIAKILKYFESRTSTRKPPYFRYARIMSPAYFQELQTKNCPELVYL 348

Query: 1222 MASALQ 1239
            +   LQ
Sbjct: 349  LVCLLQ 354


>ref|NP_057954.1| nucleocapsid protein [Northern cereal mosaic virus]
            gi|81975130|sp|Q9JGU1.1|NCAP_NCMV RecName:
            Full=Nucleoprotein; Short=NP; AltName: Full=Nucleocapsid
            protein; Short=Protein N gi|7707668|dbj|BAA95344.1|
            nucleocapsid protein [Northern cereal mosaic virus]
          Length = 431

 Score = 84.3 bits (207), Expect = 1e-13
 Identities = 47/186 (25%), Positives = 88/186 (47%), Gaps = 4/186 (2%)
 Frame = +1

Query: 694  SYLACSMLRLFTKPVANYIKAWNRITAGYAKFYRKQAGMRLPTPTEESMRGLSNWFAVDP 873
            S+++  +++L  K  +N +  WN +   Y  FY +     +P P  + + GL N+   DP
Sbjct: 169  SFISAFLMKLIVKQQSNIVDGWNGMLERYTNFYGESPITAVPKPNADWLAGLKNYLISDP 228

Query: 874  RAKVTLYRILWLGNST----EEYMGFKKFLYDMHLTYTGMHIVDILLQLCEQLNCSPGGV 1041
            +   T  R++    +     ++     ++L  + L+ TGMH   + L++ +Q N     +
Sbjct: 229  KIGHTWVRVISAAENALSVGDKSFQMVRYLASLPLSLTGMHAYKLFLEVQKQSNLGMQWL 288

Query: 1042 LALINCRETERQVQCLTHLLKILADTGECHKKRMWRYGRIFDETFMADLQTKACPKLVYI 1221
            L  +   +T   ++ +  +LK         K   +RY RI    +  +LQTK CP+LVY+
Sbjct: 289  LEEMVSPKTLPALEGIAKILKNFESRTSTRKPPYFRYARIMSPAYFQELQTKNCPELVYL 348

Query: 1222 MASALQ 1239
            +   LQ
Sbjct: 349  LVCLLQ 354


>ref|YP_002308371.1| N protein [Lettuce yellow mottle virus] gi|157427483|gb|ABV56124.1| N
            protein [Lettuce yellow mottle virus]
          Length = 452

 Score = 74.3 bits (181), Expect = 1e-10
 Identities = 61/243 (25%), Positives = 109/243 (44%), Gaps = 11/243 (4%)
 Frame = +1

Query: 658  ATVDVEEESAVYSYLACSMLRLFTKPVANYIKAWNRITAGYAKFYRKQAGM-RLPTPTEE 834
            A V  E E+A Y +LA  +++L  K   ++I+   R+   ++ +Y   + + +   PTE 
Sbjct: 195  AQVVDETEAAAYGFLAAIIIKLCAKTAESFIEGLPRVRDRFSSWYDTSSQVIKTFNPTES 254

Query: 835  SMRGLSNWFAVDPRAKVTLYRILWLG-NSTEE------YMGFKKFLYDMHLTYTGMHIVD 993
             +  L   F   P    T   +LW+  N   E        G   +L     +Y GMH   
Sbjct: 255  VLNTLRTGFGRRPEILSTW--VLWVAYNENREDPLLITQQGLLTYLAGQQFSYPGMHAYT 312

Query: 994  ILLQLCEQLNCSPGGVLALINCRETERQVQCLTHLLKILADTGECHKKRM--WRYGRIFD 1167
            +L+++ EQ     G +L  ++C  T   V+ +  ++K    T + H KR   +RY R +D
Sbjct: 313  LLIEIHEQTGIKFGQLLREMDCPATRAGVKEVLDIIKDFEIT-KLHPKRTTYFRYARNWD 371

Query: 1168 ETFMADLQTKACPKLVYIMASALQMVAPERHSG-ILKIAQLADVSEENKKKCKVAAKQML 1344
              +   LQ+  C  LVY+ AS  + ++ +   G   +I  +  +    K++ +  A +M 
Sbjct: 372  PKYFGTLQSTQCKTLVYVAASVCKKISAQGEKGDPTEIYAIKTLDATIKERLEAVANRMA 431

Query: 1345 QSI 1353
              I
Sbjct: 432  HKI 434


>emb|CAG34087.1| nucleocapsid protein [Lettuce necrotic yellows virus]
          Length = 459

 Score = 73.6 bits (179), Expect = 2e-10
 Identities = 69/268 (25%), Positives = 120/268 (44%), Gaps = 12/268 (4%)
 Frame = +1

Query: 598  RYDEYPEEMISRQGPFEPITATVDVEE-ESAVYSYLACSMLRLFTKPVANYIKAWNRITA 774
            RY+   ++M  ++       ATV   E E+A Y +LA S+L+L+ K   +Y+    +I  
Sbjct: 178  RYEAIIKKMEDQEAGLGTSKATVVTSETEAAAYGFLAASLLKLYAKSTESYVAGLAQIRN 237

Query: 775  GYAKFYR-KQAGMRLPTPTEESMRGLSNWFAVDPRAKVTLYRILWLG---NSTEEYM--- 933
             +A +Y   +A +    PTE ++  L   FA  P    T    LW+    N T   +   
Sbjct: 238  RFAAWYDCPKAVLDAFQPTEAALVSLRAAFARRPEVLSTW--TLWVAVNENRTPGLLVTQ 295

Query: 934  -GFKKFLYDMHLTYTGMHIVDILLQLCEQLNCSPGGVLALINCRETERQVQCLTHLLKIL 1110
             G   +L      Y GMH   +L+++ E        +L  ++C  T   V+    L++  
Sbjct: 296  QGLLNYLACQQFAYPGMHAYTLLIEIHEHTGMKFSDLLVEMDCPATRAGVREALELIRDY 355

Query: 1111 ADTGECHKKRM--WRYGRIFDETFMADLQTKACPKLVYIMASALQMVAPERHSG-ILKIA 1281
              T + H KR   +RY R +D  +   LQ+  C  LVY+ AS  + V+ +  +G  ++I 
Sbjct: 356  EITKD-HPKRTTYFRYARNWDPKYFGALQSTECKTLVYVAASVSKKVSAQGANGDPMEIF 414

Query: 1282 QLADVSEENKKKCKVAAKQMLQSIKEPL 1365
             + ++    K +    A+ M   I + +
Sbjct: 415  AIKNLDATIKARLDPVAENMAGKILDQM 442


>gb|AAU12861.1| coat protein [Lettuce big-vein associated virus]
          Length = 397

 Score = 73.2 bits (178), Expect = 3e-10
 Identities = 74/302 (24%), Positives = 129/302 (42%), Gaps = 13/302 (4%)
 Frame = +1

Query: 475  SKRGVAALFPLAYNLKAPRVNSTGEYVFP------DVERIITSIADERYDEYPEEMISRQ 636
            S R +AA   + +N+++  V+     +FP      D   +     +    +Y + M+   
Sbjct: 65   SPRAIAAALIMTWNMRS--VDPVAVRIFPAKDKGKDTADVDVKNLEVAGVDYIDAMVE-- 120

Query: 637  GPFEPITATVDVEEESAVYS--YLACSMLRLFTKPVANYIKAWNR--ITAGYAKFYRKQA 804
                  T   DV +   + +  ++A S L++F K    + +AW    I   YA F + + 
Sbjct: 121  ------TNVKDVSDIEIIRAGAFIAASTLKMFAKSFTGWTQAWEHKHIQKRYADFCKTEY 174

Query: 805  GMRLPTPTEESMRGLSNWFAVDPRAKVTLYRILW-LGNSTEEYMGFKKFLYDMHLTYTGM 981
              +  T   +    +   +      + TL RIL+ LG+ T+   G  + L+D HL  TGM
Sbjct: 175  PFKEFTTNTKCAETMYEAYQGQKLYQGTLGRILYALGDVTDP--GQTEMLFDQHLANTGM 232

Query: 982  HIVDILLQLCEQLNCSPGGVLALINCRETERQVQCLTHLL-KILADTGECHKKRMWRYGR 1158
            HI+         +  +  G+L+ +N  +    +  L  L+ + L+       +  WR+ R
Sbjct: 233  HIIPQFTNAQLSIGATTAGLLSALNYGQNFGTLMQLKKLINESLSKPPGPDNRATWRFAR 292

Query: 1159 IFDETFMADLQTKACPKLVYIMASALQM-VAPERHSGILKIAQLADVSEENKKKCKVAAK 1335
            IFD +    LQTK C   V I+A+   M       S  L IA L  ++ E K+  +  AK
Sbjct: 293  IFDPSVFQTLQTKYCADTVAILANINSMGKLSTETSNPLNIAVLKQMAPERKRYTRQVAK 352

Query: 1336 QM 1341
             +
Sbjct: 353  NI 354


>ref|YP_006576501.2| nucleocapsid protein [Persimmon virus A] gi|507833975|dbj|BAM36030.2|
            nucleocapsid protein [Persimmon virus A]
          Length = 450

 Score = 72.4 bits (176), Expect = 5e-10
 Identities = 78/348 (22%), Positives = 149/348 (42%), Gaps = 36/348 (10%)
 Frame = +1

Query: 400  TLERHTVEEVAILGRKVIPMISSG-FSKRGVAALFPLAYNLKAPR-------VNSTGEYV 555
            +L   TV+++ ++G   I  I +G  S   V  L  LA +L+ P           T ++ 
Sbjct: 86   SLSEITVDQLCVVGAATIKRIKNGDTSNLTVDGLIYLATSLRDPSNPEVALLTAPTAKFG 145

Query: 556  FPDVERIITSIADERYDEYPE-----------------EMISRQGPFEPITATVDVEEES 684
             P    I  +  D +    P+                 +++  +       ++V  E ++
Sbjct: 146  APAALTIDLTNTDSQQATNPKISVKAQKLIDRRKKEASQIVDEEEKKNDDVSSVSKEGQA 205

Query: 685  AVYSYLACSMLRLFTKPVANYIKAWNRITAGYAKFYRKQAGMRLPTPTEESMRG-LSNWF 861
            + Y ++A  ++RL+++   ++  + + + + +  +Y + + +      EE++   L    
Sbjct: 206  SAYCFIAAYLMRLYSRTAESFCASLDLMRSRFGSWYTEGSSILDSFEMEETIADDLKGML 265

Query: 862  AVDPRAKVTLYRILWLGNSTEEYM------GFKKFLYDMHLTYTGMHIVDILLQLCEQLN 1023
            +  P    T   ++W+  +    +      G  ++L     +YT +H+V   L + +   
Sbjct: 266  SKKPNILNTW--VMWVAFNENASVLDRNNRGLMEYLAGQIFSYTSLHVVTQTLAIQQYTK 323

Query: 1024 CSPGGVLALINCRETERQVQCLTHLLKILADTGECHKKR--MWRYGRIFDETFMADLQTK 1197
            C    +L+ +    T   VQ L  L++    T   H  R   +RY R +D  + A LQTK
Sbjct: 324  CDMAMLLSELESPMTRGTVQELYKLIRDYEVT-TLHPDRTTFFRYARNWDAGYFAPLQTK 382

Query: 1198 ACPKLVYIMASALQMVAPE-RHSGILKIAQLADVSEENKKKC-KVAAK 1335
             C  LVY+ AS ++++AP    S   KI  L+D+ E  K K  KVA K
Sbjct: 383  KCTNLVYLTASVIKLIAPTGARSDPTKIYGLSDLGEMTKTKLDKVAMK 430


>ref|YP_425087.1| nucleocapsid protein [Lettuce necrotic yellows virus]
            gi|75568834|sp|Q86134.1|NCAP_LNYV3 RecName:
            Full=Nucleoprotein; Short=NP; AltName: Full=Nucleocapsid
            protein; Short=Protein N gi|532495|gb|AAA47287.1|
            nucleocapsid protein [Lettuce necrotic yellows virus]
            gi|83318569|emb|CAI30421.1| nucleocapsid protein [Lettuce
            necrotic yellows virus]
          Length = 459

 Score = 72.4 bits (176), Expect = 5e-10
 Identities = 68/268 (25%), Positives = 120/268 (44%), Gaps = 12/268 (4%)
 Frame = +1

Query: 598  RYDEYPEEMISRQGPFEPITATVDVEE-ESAVYSYLACSMLRLFTKPVANYIKAWNRITA 774
            RY+   ++M  ++       ATV   E E+A Y +LA ++L+L+ K   +Y+    +I  
Sbjct: 178  RYEAIIKKMEDQEAGLGTSKATVVTSETEAAAYGFLAATLLKLYAKSTESYVAGLAQIRN 237

Query: 775  GYAKFYR-KQAGMRLPTPTEESMRGLSNWFAVDPRAKVTLYRILWLG---NSTEEYM--- 933
             +A +Y   +A +    PTE ++  L   FA  P    T    LW+    N T   +   
Sbjct: 238  RFAAWYDCPKAVLDAFQPTEAALVSLRAAFARRPEVLSTW--TLWVAVNENRTPGLLVTQ 295

Query: 934  -GFKKFLYDMHLTYTGMHIVDILLQLCEQLNCSPGGVLALINCRETERQVQCLTHLLKIL 1110
             G   +L      Y GMH   +L+++ E        +L  ++C  T   V+    L++  
Sbjct: 296  QGLLNYLACQQFAYPGMHAYTLLIEIHEHTGMKFSDLLVEMDCPATRAGVREALELIRDY 355

Query: 1111 ADTGECHKKRM--WRYGRIFDETFMADLQTKACPKLVYIMASALQMVAPERHSG-ILKIA 1281
              T + H KR   +RY R +D  +   LQ+  C  LVY+ AS  + V+ +  +G  ++I 
Sbjct: 356  EITKD-HPKRTTYFRYARNWDPKYFGALQSTECKTLVYVAASVSKKVSAQGANGDPMEIF 414

Query: 1282 QLADVSEENKKKCKVAAKQMLQSIKEPL 1365
             + ++    K +    A+ M   I + +
Sbjct: 415  AIKNLDATIKARLDPVAENMAGKILDQM 442


>emb|CAG34090.1| nucleocapsid protein [Lettuce necrotic yellows virus]
          Length = 459

 Score = 72.4 bits (176), Expect = 5e-10
 Identities = 65/248 (26%), Positives = 111/248 (44%), Gaps = 11/248 (4%)
 Frame = +1

Query: 655  TATVDVEEESAVYSYLACSMLRLFTKPVANYIKAWNRITAGYAKFYR-KQAGMRLPTPTE 831
            T  V  E E+A Y +LA ++L+L+ K   +YI    +I   +A +Y   +A +    PTE
Sbjct: 198  TTVVTSETEAAAYGFLAATLLKLYAKSTESYIAGLAQIRNRFAAWYDCPKAVLDAFQPTE 257

Query: 832  ESMRGLSNWFAVDPRAKVTLYRILWLG---NSTEEYM----GFKKFLYDMHLTYTGMHIV 990
             ++  L   FA  P    T    LW+    N T   +    G   +L      Y GMH  
Sbjct: 258  AALVSLRAAFARRPEVLSTW--TLWVAVNENRTPGLLVTQQGLLNYLACQQFAYPGMHAY 315

Query: 991  DILLQLCEQLNCSPGGVLALINCRETERQVQCLTHLLKILADTGECHKKRM--WRYGRIF 1164
             +L+++ E        +L  ++C  T   V+    L++    T + H KR   +RY R +
Sbjct: 316  TLLMEIHEHTGMKFSDLLVEMDCPATRAGVREALELIRDYEITKD-HPKRTTYFRYARNW 374

Query: 1165 DETFMADLQTKACPKLVYIMASALQMVAPERHSG-ILKIAQLADVSEENKKKCKVAAKQM 1341
            D  +   LQ+  C  LVY+ AS  + V+ +  +G  ++I  + ++    K +    A+ M
Sbjct: 375  DPKYFGALQSTECKTLVYVAASVSKKVSAQGANGDPMEIFAIKNLDATIKARLDPVAENM 434

Query: 1342 LQSIKEPL 1365
               I + +
Sbjct: 435  AGKILDQM 442


>emb|CAG34086.1| nucleocapsid protein [Lettuce necrotic yellows virus]
          Length = 459

 Score = 72.4 bits (176), Expect = 5e-10
 Identities = 65/248 (26%), Positives = 111/248 (44%), Gaps = 11/248 (4%)
 Frame = +1

Query: 655  TATVDVEEESAVYSYLACSMLRLFTKPVANYIKAWNRITAGYAKFYR-KQAGMRLPTPTE 831
            T  V  E E+A Y +LA ++L+L+ K   +YI    +I   +A +Y   +A +    PTE
Sbjct: 198  TTVVTSETEAAAYGFLAATLLKLYAKSTESYIAGLAQIRNRFAAWYDCPKAVLDAFQPTE 257

Query: 832  ESMRGLSNWFAVDPRAKVTLYRILWLG---NSTEEYM----GFKKFLYDMHLTYTGMHIV 990
             ++  L   FA  P    T    LW+    N T   +    G   +L      Y GMH  
Sbjct: 258  AALVSLRAAFARRPEVLSTW--TLWVAVNENRTPGLLVTQQGLLNYLACQQFAYPGMHAY 315

Query: 991  DILLQLCEQLNCSPGGVLALINCRETERQVQCLTHLLKILADTGECHKKRM--WRYGRIF 1164
             +L+++ E        +L  ++C  T   V+    L++    T + H KR   +RY R +
Sbjct: 316  TLLIEIHEHTGMKFSDLLVEMDCPATRAGVREALELIRDYEITKD-HPKRTTYFRYARNW 374

Query: 1165 DETFMADLQTKACPKLVYIMASALQMVAPERHSG-ILKIAQLADVSEENKKKCKVAAKQM 1341
            D  +   LQ+  C  LVY+ AS  + V+ +  +G  ++I  + ++    K +    A+ M
Sbjct: 375  DPKYFGALQSTECKTLVYVAASVSKKVSAQGANGDPMEIFAIKNLDATIKARLDPVAENM 434

Query: 1342 LQSIKEPL 1365
               I + +
Sbjct: 435  AGKILDQM 442


>emb|CAG34083.1| nucleocapsid protein [Lettuce necrotic yellows virus]
          Length = 459

 Score = 72.4 bits (176), Expect = 5e-10
 Identities = 68/268 (25%), Positives = 120/268 (44%), Gaps = 12/268 (4%)
 Frame = +1

Query: 598  RYDEYPEEMISRQGPFEPITATVDVEE-ESAVYSYLACSMLRLFTKPVANYIKAWNRITA 774
            RY+   ++M  ++       ATV   E E+A Y +LA ++L+L+ K   +Y+    +I  
Sbjct: 178  RYEAIIKKMEDQEAGLGTSKATVVTSETEAAAYGFLAATLLKLYAKSTESYVAGLAQIRN 237

Query: 775  GYAKFYR-KQAGMRLPTPTEESMRGLSNWFAVDPRAKVTLYRILWLG---NSTEEYM--- 933
             +A +Y   +A +    PTE ++  L   FA  P    T    LW+    N T   +   
Sbjct: 238  RFAAWYDCPKAVLDAFQPTEAALVSLRAAFARRPEVLSTW--TLWVAVNENRTPGLLVTQ 295

Query: 934  -GFKKFLYDMHLTYTGMHIVDILLQLCEQLNCSPGGVLALINCRETERQVQCLTHLLKIL 1110
             G   +L      Y GMH   +L+++ E        +L  ++C  T   V+    L++  
Sbjct: 296  QGLLNYLACQQFAYPGMHAYTLLIEIHEHTGMKFSDLLVEMDCPATRAGVREALELIRDY 355

Query: 1111 ADTGECHKKRM--WRYGRIFDETFMADLQTKACPKLVYIMASALQMVAPERHSG-ILKIA 1281
              T + H KR   +RY R +D  +   LQ+  C  LVY+ AS  + V+ +  +G  ++I 
Sbjct: 356  EITKD-HPKRTTYFRYARNWDPKYFGALQSTECKTLVYVAASVSKKVSAQGANGDPMEIF 414

Query: 1282 QLADVSEENKKKCKVAAKQMLQSIKEPL 1365
             + ++    K +    A+ M   I + +
Sbjct: 415  AIKNLDATIKARLDPVAENMAGKILDQM 442


>emb|CAG34089.1| nucleocapsid protein [Lettuce necrotic yellows virus]
          Length = 459

 Score = 72.4 bits (176), Expect = 5e-10
 Identities = 65/248 (26%), Positives = 111/248 (44%), Gaps = 11/248 (4%)
 Frame = +1

Query: 655  TATVDVEEESAVYSYLACSMLRLFTKPVANYIKAWNRITAGYAKFYR-KQAGMRLPTPTE 831
            T  V  E E+A Y +LA ++L+L+ K   +YI    +I   +A +Y   +A +    PTE
Sbjct: 198  TTVVTSETEAAAYGFLAATLLKLYAKSTESYIAGLAQIRNRFAAWYDCPKAVLDAFQPTE 257

Query: 832  ESMRGLSNWFAVDPRAKVTLYRILWLG---NSTEEYM----GFKKFLYDMHLTYTGMHIV 990
             ++  L   FA  P    T    LW+    N T   +    G   +L      Y GMH  
Sbjct: 258  AALVSLRAAFARRPEVLSTW--TLWVAVNENRTPGLLVTQQGLLNYLACQQFAYPGMHAY 315

Query: 991  DILLQLCEQLNCSPGGVLALINCRETERQVQCLTHLLKILADTGECHKKRM--WRYGRIF 1164
             +L+++ E        +L  ++C  T   V+    L++    T + H KR   +RY R +
Sbjct: 316  TLLIEIHEHTGMKFSDLLVEMDCPATRAGVREALELIRDYEITKD-HPKRTTYFRYARNW 374

Query: 1165 DETFMADLQTKACPKLVYIMASALQMVAPERHSG-ILKIAQLADVSEENKKKCKVAAKQM 1341
            D  +   LQ+  C  LVY+ AS  + V+ +  +G  ++I  + ++    K +    A+ M
Sbjct: 375  DPKYFGALQSTECKTLVYVAASVSKKVSAQGANGDPMEIFAIKNLDATIKARLDPVAENM 434

Query: 1342 LQSIKEPL 1365
               I + +
Sbjct: 435  AGKILDQM 442


>emb|CAG34088.1| nucleocapsid protein [Lettuce necrotic yellows virus]
          Length = 459

 Score = 72.4 bits (176), Expect = 5e-10
 Identities = 65/248 (26%), Positives = 111/248 (44%), Gaps = 11/248 (4%)
 Frame = +1

Query: 655  TATVDVEEESAVYSYLACSMLRLFTKPVANYIKAWNRITAGYAKFYR-KQAGMRLPTPTE 831
            T  V  E E+A Y +LA ++L+L+ K   +YI    +I   +A +Y   +A +    PTE
Sbjct: 198  TTVVTSETEAAAYGFLAATLLKLYAKSTESYIAGLAQIRNRFAAWYDCPKAVLDAFQPTE 257

Query: 832  ESMRGLSNWFAVDPRAKVTLYRILWLG---NSTEEYM----GFKKFLYDMHLTYTGMHIV 990
             ++  L   FA  P    T    LW+    N T   +    G   +L      Y GMH  
Sbjct: 258  AALVSLRAAFARRPEVLSTW--TLWVAVNENRTPGLLVTQQGLLNYLACQQFAYPGMHAY 315

Query: 991  DILLQLCEQLNCSPGGVLALINCRETERQVQCLTHLLKILADTGECHKKRM--WRYGRIF 1164
             +L+++ E        +L  ++C  T   V+    L++    T + H KR   +RY R +
Sbjct: 316  TLLIEIHEHTGMKFSDLLVEMDCPATRAGVREALELIRDYEITKD-HPKRTTYFRYARNW 374

Query: 1165 DETFMADLQTKACPKLVYIMASALQMVAPERHSG-ILKIAQLADVSEENKKKCKVAAKQM 1341
            D  +   LQ+  C  LVY+ AS  + V+ +  +G  ++I  + ++    K +    A+ M
Sbjct: 375  DPKYFGALQSTECKTLVYVAASVSKKVSAQGANGDPMEIFAIKNLDATIKARLDPVAENM 434

Query: 1342 LQSIKEPL 1365
               I + +
Sbjct: 435  AGKILDQM 442


>emb|CAG34082.1| nucleocapsid protein [Lettuce necrotic yellows virus]
            gi|67508749|emb|CAG34084.1| nucleocapsid protein [Lettuce
            necrotic yellows virus] gi|67508751|emb|CAG34085.1|
            nucleocapsid protein [Lettuce necrotic yellows virus]
          Length = 459

 Score = 72.4 bits (176), Expect = 5e-10
 Identities = 65/248 (26%), Positives = 111/248 (44%), Gaps = 11/248 (4%)
 Frame = +1

Query: 655  TATVDVEEESAVYSYLACSMLRLFTKPVANYIKAWNRITAGYAKFYR-KQAGMRLPTPTE 831
            T  V  E E+A Y +LA ++L+L+ K   +YI    +I   +A +Y   +A +    PTE
Sbjct: 198  TTVVTSETEAAAYGFLAATLLKLYAKSTESYIAGLAQIRNRFAAWYDCPKAVLDAFQPTE 257

Query: 832  ESMRGLSNWFAVDPRAKVTLYRILWLG---NSTEEYM----GFKKFLYDMHLTYTGMHIV 990
             ++  L   FA  P    T    LW+    N T   +    G   +L      Y GMH  
Sbjct: 258  AALVSLRAAFARRPEVLSTW--TLWVAVNENRTPGLLVTQQGLLNYLACQQFAYPGMHAY 315

Query: 991  DILLQLCEQLNCSPGGVLALINCRETERQVQCLTHLLKILADTGECHKKRM--WRYGRIF 1164
             +L+++ E        +L  ++C  T   V+    L++    T + H KR   +RY R +
Sbjct: 316  TLLIEIHEHTGMKFSDLLVEMDCPATRAGVREALELIRDYEITKD-HPKRTTYFRYARNW 374

Query: 1165 DETFMADLQTKACPKLVYIMASALQMVAPERHSG-ILKIAQLADVSEENKKKCKVAAKQM 1341
            D  +   LQ+  C  LVY+ AS  + V+ +  +G  ++I  + ++    K +    A+ M
Sbjct: 375  DPKYFGALQSTECKTLVYVAASVSKKVSAQGANGDPMEIFAIKNLDATIKARLDPVAENM 434

Query: 1342 LQSIKEPL 1365
               I + +
Sbjct: 435  AGKILDQM 442


>gb|AAU12860.1| coat protein [Lettuce big-vein associated virus]
          Length = 397

 Score = 72.0 bits (175), Expect = 7e-10
 Identities = 73/302 (24%), Positives = 128/302 (42%), Gaps = 13/302 (4%)
 Frame = +1

Query: 475  SKRGVAALFPLAYNLKAPRVNSTGEYVFP------DVERIITSIADERYDEYPEEMISRQ 636
            S R +AA   + +N+++  V+     +FP      D   +     +    +Y + M+   
Sbjct: 65   SPRAIAAALIMTWNMRS--VDPVAVRIFPAKDKGKDTADVDVKNLEVAGVDYIDAMVE-- 120

Query: 637  GPFEPITATVDVEEESAVYS--YLACSMLRLFTKPVANYIKAWNR--ITAGYAKFYRKQA 804
                  T   DV +   + +  ++A S L++F K    + +AW    I   YA F + + 
Sbjct: 121  ------TNVKDVSDIEIIRAGAFIAASTLKMFAKSFTGWTQAWEHKHIQKRYADFCKTEY 174

Query: 805  GMRLPTPTEESMRGLSNWFAVDPRAKVTLYRILW-LGNSTEEYMGFKKFLYDMHLTYTGM 981
              +  T   +    +   +      + TL RIL+ LG+ T+      + L+D HL  TGM
Sbjct: 175  SFKEFTTNTKCAETMYEAYQGQKLYQRTLGRILYALGDVTDPRQ--TEMLFDQHLANTGM 232

Query: 982  HIVDILLQLCEQLNCSPGGVLALINCRETERQVQCLTHLL-KILADTGECHKKRMWRYGR 1158
            HI+         +  +  G+L+ +N  +    +  L  L+ + L+       +  WR+ R
Sbjct: 233  HIIPQFTNAQLSIGATTAGLLSALNYGQNFGTLMQLKKLINESLSKPPGPDNRATWRFAR 292

Query: 1159 IFDETFMADLQTKACPKLVYIMASALQM-VAPERHSGILKIAQLADVSEENKKKCKVAAK 1335
            IFD +    LQTK C   V I+A+   M       S  L IA L  ++ E K+  +  AK
Sbjct: 293  IFDPSVFQTLQTKYCADTVAILANINSMGKLSTETSNPLNIAVLKQMAPERKRYTRQVAK 352

Query: 1336 QM 1341
             +
Sbjct: 353  NI 354


>gb|AAQ77394.1| coat protein [Lettuce big-vein associated virus]
          Length = 397

 Score = 72.0 bits (175), Expect = 7e-10
 Identities = 74/302 (24%), Positives = 128/302 (42%), Gaps = 13/302 (4%)
 Frame = +1

Query: 475  SKRGVAALFPLAYNLKAPRVNSTGEYVFP------DVERIITSIADERYDEYPEEMISRQ 636
            S R +AA   + +N+++  V+     +FP      D   +     +    +Y + M+   
Sbjct: 65   SPRAIAAALIMTWNMRS--VDPVAVRIFPAKDKGKDTADVDVKNLEVAGVDYIDAMVE-- 120

Query: 637  GPFEPITATVDVEEESAVYS--YLACSMLRLFTKPVANYIKAWNR--ITAGYAKFYRKQA 804
                  T   DV +   + +  ++A S L++F K    + +AW    I   YA F + + 
Sbjct: 121  ------TNVKDVSDIEIIRAGAFIAASTLKMFAKSFTGWTQAWEHKHIQKRYADFCKTEY 174

Query: 805  GMRLPTPTEESMRGLSNWFAVDPRAKVTLYRILW-LGNSTEEYMGFKKFLYDMHLTYTGM 981
              +  T   +    +   +      + TL RIL+ LG+ T+      + L+D HL  TGM
Sbjct: 175  PFKEFTTNTKCAETMYEAYQGQKLYQGTLGRILYALGDVTDPRQ--TEMLFDQHLANTGM 232

Query: 982  HIVDILLQLCEQLNCSPGGVLALINCRETERQVQCLTHLL-KILADTGECHKKRMWRYGR 1158
            HI+         L  +  G+L+ +N  +    +  L  L+ + L+       +  WR+ R
Sbjct: 233  HIIPQFTNAQLSLGATTAGLLSALNYGQNFGTLMQLKKLINESLSKPPGPDNRATWRFAR 292

Query: 1159 IFDETFMADLQTKACPKLVYIMASALQM-VAPERHSGILKIAQLADVSEENKKKCKVAAK 1335
            IFD +    LQTK C   V I+A+   M       S  L IA L  ++ E K+  +  AK
Sbjct: 293  IFDPSVFQTLQTKYCADTVAILANINSMGKLSTETSNPLNIAVLKQMAPERKRYTRQVAK 352

Query: 1336 QM 1341
             +
Sbjct: 353  NI 354


>gb|AAU12862.1| coat protein [Lettuce big-vein associated virus]
          Length = 397

 Score = 71.2 bits (173), Expect = 1e-09
 Identities = 73/302 (24%), Positives = 128/302 (42%), Gaps = 13/302 (4%)
 Frame = +1

Query: 475  SKRGVAALFPLAYNLKAPRVNSTGEYVFP------DVERIITSIADERYDEYPEEMISRQ 636
            S R +AA   + +N+++  V+     +FP      D   +     +    +Y + M+   
Sbjct: 65   SPRAIAAALIMTWNMRS--VDPVAVRIFPAKDKGKDTADVDVKNLEVAGVDYIDAMVE-- 120

Query: 637  GPFEPITATVDVEEESAVYS--YLACSMLRLFTKPVANYIKAWNR--ITAGYAKFYRKQA 804
                  T   DV +   + +  ++A S L++F K    + +AW    I   YA F + + 
Sbjct: 121  ------TNVKDVSDIEIIRAGAFIAASTLKMFAKSFTGWTQAWEHKHIQKRYADFCKTEY 174

Query: 805  GMRLPTPTEESMRGLSNWFAVDPRAKVTLYRILW-LGNSTEEYMGFKKFLYDMHLTYTGM 981
              +  T   +    +   +      + TL RIL+ LG+ T+      + L+D HL  TGM
Sbjct: 175  PFKEFTTNTKCAETMYEAYQGQKLYQGTLGRILYALGDVTDPRQ--TEMLFDQHLANTGM 232

Query: 982  HIVDILLQLCEQLNCSPGGVLALINCRETERQVQCLTHLL-KILADTGECHKKRMWRYGR 1158
            HI+         +  +  G+L+ +N  +    +  L  L+ + L+       +  WR+ R
Sbjct: 233  HIIPQFTNAQLSIGATTAGLLSALNYGQNFGALMQLKKLINESLSKPPGPDNRATWRFAR 292

Query: 1159 IFDETFMADLQTKACPKLVYIMASALQM-VAPERHSGILKIAQLADVSEENKKKCKVAAK 1335
            IFD +    LQTK C   V I+A+   M       S  L IA L  ++ E K+  +  AK
Sbjct: 293  IFDPSVFQTLQTKYCADTVAILANINSMGKLSTETSNPLNIAVLKQMAPERKRYTRQVAK 352

Query: 1336 QM 1341
             +
Sbjct: 353  NI 354