BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Zingiber24_contig00005240
         (646 letters)

Database: ./nr 
           37,332,560 sequences; 13,225,080,153 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

ref|XP_004973285.1| PREDICTED: chloroplastic group IIA intron sp...   216   6e-54
ref|XP_004973284.1| PREDICTED: chloroplastic group IIA intron sp...   214   1e-53
ref|XP_002444215.1| hypothetical protein SORBIDRAFT_07g015120 [S...   210   3e-52
ref|XP_006660084.1| PREDICTED: chloroplastic group IIA intron sp...   209   4e-52
tpg|DAA49208.1| TPA: chloroplast RNA splicing1 [Zea mays]             207   2e-51
tpg|DAA49210.1| TPA: chloroplast RNA splicing1 [Zea mays]             206   5e-51
tpg|DAA49209.1| TPA: chloroplast RNA splicing1 [Zea mays]             206   5e-51
ref|NP_001105008.1| chloroplastic group IIA intron splicing faci...   206   5e-51
ref|XP_006842364.1| hypothetical protein AMTR_s00079p00185530 [A...   204   1e-50
ref|XP_003573775.1| PREDICTED: chloroplastic group IIA intron sp...   204   2e-50
gb|EOY04147.1| maize chloroplast splicing factor CRS1, putative ...   201   1e-49
gb|EOY04146.1| maize chloroplast splicing factor CRS1, putative ...   201   1e-49
gb|EOY04145.1| maize chloroplast splicing factor CRS1, putative ...   201   1e-49
gb|EOY04144.1| maize chloroplast splicing factor CRS1, putative ...   201   1e-49
gb|EOY04143.1| maize chloroplast splicing factor CRS1, putative ...   201   1e-49
ref|NP_001061635.1| Os08g0360100 [Oryza sativa Japonica Group] g...   200   3e-49
gb|EEE68561.1| hypothetical protein OsJ_27045 [Oryza sativa Japo...   200   3e-49
dbj|BAJ86158.1| predicted protein [Hordeum vulgare subsp. vulgare]    200   3e-49
dbj|BAJ90288.1| predicted protein [Hordeum vulgare subsp. vulgare]    200   3e-49
ref|XP_006357840.1| PREDICTED: chloroplastic group IIA intron sp...   199   4e-49

>ref|XP_004973285.1| PREDICTED: chloroplastic group IIA intron splicing facilitator
           CRS1, chloroplastic-like isoform X2 [Setaria italica]
          Length = 736

 Score =  216 bits (549), Expect = 6e-54
 Identities = 114/216 (52%), Positives = 146/216 (67%), Gaps = 3/216 (1%)
 Frame = -1

Query: 643 VVEEIQRGW-RNDELVMVRIVEPLRRNMDRAREIVETKTGGLVVWIKRDFLVIYRGEKYG 467
           VVE+++R W R +EL  VRIVEPLRRNMDRAREI+E KTGGLV+W K D   +YRG  Y 
Sbjct: 202 VVEDLRREWARGEELAAVRIVEPLRRNMDRAREILEIKTGGLVIWTKGDIHFVYRGSNYQ 261

Query: 466 MIL-HTPSCYNAVDQVNLGIFDSNRAIFSV-NSGGIMEDMENNIYLTNKNSETQHPVEGS 293
             + H+     +V  V+   ++ +RA     N G ++ D  +       + + + P++G+
Sbjct: 262 QNMKHSQYSVASVQNVSPVKYNVHRAQIKYGNEGEVLTDGNSK-----GDDKDEEPIKGT 316

Query: 292 LYEREANRLLDGLGPRFIDWWWRTPMPVDADLLPEVVXXXXXXXXXXXXXXRVKLTDDEL 113
           LYERE NRLLD LGPRF+DWWW TP+PVDADLLPE V              R  L D+EL
Sbjct: 317 LYEREVNRLLDSLGPRFVDWWWNTPLPVDADLLPEFVPGFKTPFRQCPPGVRPTLADEEL 376

Query: 112 TYLRKLARSLPTHFALGRNTKLQGLASSIIKLWKKS 5
           TYLRKLAR LPTHFALGRN++LQGLA++I+KLW+KS
Sbjct: 377 TYLRKLARPLPTHFALGRNSRLQGLAAAILKLWEKS 412


>ref|XP_004973284.1| PREDICTED: chloroplastic group IIA intron splicing facilitator
           CRS1, chloroplastic-like isoform X1 [Setaria italica]
          Length = 748

 Score =  214 bits (546), Expect = 1e-53
 Identities = 116/223 (52%), Positives = 149/223 (66%), Gaps = 10/223 (4%)
 Frame = -1

Query: 643 VVEEIQRGW-RNDELVMVRIVEPLRRNMDRAREIVETKTGGLVVWIKRDFLVIYRGEKYG 467
           VVE+++R W R +EL  VRIVEPLRRNMDRAREI+E KTGGLV+W K D   +YRG  Y 
Sbjct: 202 VVEDLRREWARGEELAAVRIVEPLRRNMDRAREILEIKTGGLVIWTKGDIHFVYRGSNYQ 261

Query: 466 MIL-HTPSCYNAVDQVNLGIFDSNRAIFSV-NSGGIMEDMEN---NIYLTNKNS----ET 314
             + H+     +V  V+   ++ +RA     N G ++ D  +   ++   N  S    + 
Sbjct: 262 QNMKHSQYSVASVQNVSPVKYNVHRAQIKYGNEGEVLTDGNSKGDDVIQENDQSVCGQKD 321

Query: 313 QHPVEGSLYEREANRLLDGLGPRFIDWWWRTPMPVDADLLPEVVXXXXXXXXXXXXXXRV 134
           + P++G+LYERE NRLLD LGPRF+DWWW TP+PVDADLLPE V              R 
Sbjct: 322 EEPIKGTLYEREVNRLLDSLGPRFVDWWWNTPLPVDADLLPEFVPGFKTPFRQCPPGVRP 381

Query: 133 KLTDDELTYLRKLARSLPTHFALGRNTKLQGLASSIIKLWKKS 5
            L D+ELTYLRKLAR LPTHFALGRN++LQGLA++I+KLW+KS
Sbjct: 382 TLADEELTYLRKLARPLPTHFALGRNSRLQGLAAAILKLWEKS 424


>ref|XP_002444215.1| hypothetical protein SORBIDRAFT_07g015120 [Sorghum bicolor]
           gi|241940565|gb|EES13710.1| hypothetical protein
           SORBIDRAFT_07g015120 [Sorghum bicolor]
          Length = 728

 Score =  210 bits (535), Expect = 3e-52
 Identities = 116/216 (53%), Positives = 144/216 (66%), Gaps = 3/216 (1%)
 Frame = -1

Query: 643 VVEEIQRGWRN-DELVMVRIVEPLRRNMDRAREIVETKTGGLVVWIKRDFLVIYRGEKYG 467
           VVEE++R W + +EL  VRIVEPLRR+MDRAREI+E KTGGLVVW K D   +Y+G KY 
Sbjct: 199 VVEEMRREWASGEELAAVRIVEPLRRSMDRAREILEIKTGGLVVWTKGDIHFVYKGSKYQ 258

Query: 466 MILHTPSCYNAVDQVNLGIFDSNRAIFSVNSGGIMED--MENNIYLTNKNSETQHPVEGS 293
              +    +  V  V+ G      ++   N  G  +D   EN+  +  +  E   PV+G+
Sbjct: 259 Q--NAKHSHTFVTNVHKG------SLVKQNVRGEADDAFQENDQSICGQKDE--EPVKGT 308

Query: 292 LYEREANRLLDGLGPRFIDWWWRTPMPVDADLLPEVVXXXXXXXXXXXXXXRVKLTDDEL 113
           LYERE NRLLD LGPRF+DWWW TP+PVDADLLPE +              R  L D+EL
Sbjct: 309 LYEREVNRLLDTLGPRFVDWWWDTPLPVDADLLPEFIPGFKTPFRQCPPGVRPTLADEEL 368

Query: 112 TYLRKLARSLPTHFALGRNTKLQGLASSIIKLWKKS 5
           TYLRKLAR LPTHFALGRNT+LQGLA++I+KLW+KS
Sbjct: 369 TYLRKLARPLPTHFALGRNTRLQGLAAAILKLWEKS 404


>ref|XP_006660084.1| PREDICTED: chloroplastic group IIA intron splicing facilitator
           CRS1, chloroplastic-like [Oryza brachyantha]
          Length = 621

 Score =  209 bits (533), Expect = 4e-52
 Identities = 115/215 (53%), Positives = 139/215 (64%), Gaps = 2/215 (0%)
 Frame = -1

Query: 643 VVEEIQRGW--RNDELVMVRIVEPLRRNMDRAREIVETKTGGLVVWIKRDFLVIYRGEKY 470
           VVEE++  W  R  EL  VRIVEPL+RNMDRAREI+E KTGG+VVW K D   +YRG  Y
Sbjct: 74  VVEELRGAWARRVQELAGVRIVEPLQRNMDRAREILEIKTGGIVVWTKGDIHFVYRGANY 133

Query: 469 GMILHTPSCYNAVDQVNLGIFDSNRAIFSVNSGGIMEDMENNIYLTNKNSETQHPVEGSL 290
             I ++   ++ V    +    +N        G   E    N    + + + + PV+G+L
Sbjct: 134 --IENSKRHHDFVHNEEVSPVTANFPASQGKYGSKAESFHENDQSIDVHKDNE-PVKGTL 190

Query: 289 YEREANRLLDGLGPRFIDWWWRTPMPVDADLLPEVVXXXXXXXXXXXXXXRVKLTDDELT 110
           YERE NRLLD LGPRF+DWWW TP+PVDADLLPEVV              R  L D ELT
Sbjct: 191 YEREVNRLLDSLGPRFVDWWWNTPLPVDADLLPEVVPGFKTPFRQCPPGVRPTLADQELT 250

Query: 109 YLRKLARSLPTHFALGRNTKLQGLASSIIKLWKKS 5
           YLRKLAR LPTHFALGRNTKLQGLA++I+KLW+KS
Sbjct: 251 YLRKLARPLPTHFALGRNTKLQGLAAAILKLWEKS 285


>tpg|DAA49208.1| TPA: chloroplast RNA splicing1 [Zea mays]
          Length = 496

 Score =  207 bits (527), Expect = 2e-51
 Identities = 117/225 (52%), Positives = 147/225 (65%), Gaps = 12/225 (5%)
 Frame = -1

Query: 643 VVEEIQRGWRN-DELVMVRIVEPLRRNMDRAREIVETKTGGLVVWIKRDFLVIYRGEKYG 467
           VV+E++R W + +EL  VRIVEPLRR+MDRAREI+E KTGGLVVW K D   +YRG KY 
Sbjct: 200 VVKEVRREWASGEELAAVRIVEPLRRSMDRAREILEIKTGGLVVWTKGDMHFVYRGSKYQ 259

Query: 466 M-ILHTPSCYNAVDQVNLGIFDSNRAIFS--------VNSGGIMED--MENNIYLTNKNS 320
               H+ +    V +  L   + +  +          +N+ G  +D   EN+  +  +  
Sbjct: 260 QNAKHSHTFLTNVHKGYLVKHNVHTTLLKYGSIGPVLINNYGEADDAFQENDQSICGQKD 319

Query: 319 ETQHPVEGSLYEREANRLLDGLGPRFIDWWWRTPMPVDADLLPEVVXXXXXXXXXXXXXX 140
           E   PV+G+LYERE NRLLD LGPRF+DWWW TP+PVDADLLPE V              
Sbjct: 320 E--EPVKGTLYEREVNRLLDTLGPRFVDWWWDTPLPVDADLLPEFVPGFKTPYRLCPPGV 377

Query: 139 RVKLTDDELTYLRKLARSLPTHFALGRNTKLQGLASSIIKLWKKS 5
           R  L D+ELTYLRKLAR LPTHFALGRNT+LQGLA++I+KLW+KS
Sbjct: 378 RPTLADEELTYLRKLARLLPTHFALGRNTRLQGLAAAILKLWEKS 422


>tpg|DAA49210.1| TPA: chloroplast RNA splicing1 [Zea mays]
          Length = 467

 Score =  206 bits (524), Expect = 5e-51
 Identities = 113/214 (52%), Positives = 141/214 (65%), Gaps = 1/214 (0%)
 Frame = -1

Query: 643 VVEEIQRGWRN-DELVMVRIVEPLRRNMDRAREIVETKTGGLVVWIKRDFLVIYRGEKYG 467
           VV+E++R W + +EL  VRIVEPLRR+MDRAREI+E KTGGLVVW K D   +YRG KY 
Sbjct: 200 VVKEVRREWASGEELAAVRIVEPLRRSMDRAREILEIKTGGLVVWTKGDMHFVYRGSKYQ 259

Query: 466 MILHTPSCYNAVDQVNLGIFDSNRAIFSVNSGGIMEDMENNIYLTNKNSETQHPVEGSLY 287
                    NA          S+  + +V+     ++ + +I       + + PV+G+LY
Sbjct: 260 Q--------NAKH--------SHTFLTNVHKDDAFQENDQSIC----GQKDEEPVKGTLY 299

Query: 286 EREANRLLDGLGPRFIDWWWRTPMPVDADLLPEVVXXXXXXXXXXXXXXRVKLTDDELTY 107
           ERE NRLLD LGPRF+DWWW TP+PVDADLLPE V              R  L D+ELTY
Sbjct: 300 EREVNRLLDTLGPRFVDWWWDTPLPVDADLLPEFVPGFKTPYRLCPPGVRPTLADEELTY 359

Query: 106 LRKLARSLPTHFALGRNTKLQGLASSIIKLWKKS 5
           LRKLAR LPTHFALGRNT+LQGLA++I+KLW+KS
Sbjct: 360 LRKLARLLPTHFALGRNTRLQGLAAAILKLWEKS 393


>tpg|DAA49209.1| TPA: chloroplast RNA splicing1 [Zea mays]
          Length = 715

 Score =  206 bits (524), Expect = 5e-51
 Identities = 113/214 (52%), Positives = 141/214 (65%), Gaps = 1/214 (0%)
 Frame = -1

Query: 643 VVEEIQRGWRN-DELVMVRIVEPLRRNMDRAREIVETKTGGLVVWIKRDFLVIYRGEKYG 467
           VV+E++R W + +EL  VRIVEPLRR+MDRAREI+E KTGGLVVW K D   +YRG KY 
Sbjct: 200 VVKEVRREWASGEELAAVRIVEPLRRSMDRAREILEIKTGGLVVWTKGDMHFVYRGSKYQ 259

Query: 466 MILHTPSCYNAVDQVNLGIFDSNRAIFSVNSGGIMEDMENNIYLTNKNSETQHPVEGSLY 287
                    NA          S+  + +V+     ++ + +I       + + PV+G+LY
Sbjct: 260 Q--------NAKH--------SHTFLTNVHKDDAFQENDQSIC----GQKDEEPVKGTLY 299

Query: 286 EREANRLLDGLGPRFIDWWWRTPMPVDADLLPEVVXXXXXXXXXXXXXXRVKLTDDELTY 107
           ERE NRLLD LGPRF+DWWW TP+PVDADLLPE V              R  L D+ELTY
Sbjct: 300 EREVNRLLDTLGPRFVDWWWDTPLPVDADLLPEFVPGFKTPYRLCPPGVRPTLADEELTY 359

Query: 106 LRKLARSLPTHFALGRNTKLQGLASSIIKLWKKS 5
           LRKLAR LPTHFALGRNT+LQGLA++I+KLW+KS
Sbjct: 360 LRKLARLLPTHFALGRNTRLQGLAAAILKLWEKS 393


>ref|NP_001105008.1| chloroplastic group IIA intron splicing facilitator CRS1,
           chloroplastic precursor [Zea mays]
           gi|75173308|sp|Q9FYT6.1|CRS1_MAIZE RecName:
           Full=Chloroplastic group IIA intron splicing facilitator
           CRS1, chloroplastic; AltName: Full=Chloroplastic RNA
           splicing factor 1; AltName: Full=Protein CHLOROPLAST RNA
           SPLICING 1; Flags: Precursor
           gi|9837550|gb|AAG00595.1|AF290414_1 CRS1 [Zea mays]
          Length = 715

 Score =  206 bits (524), Expect = 5e-51
 Identities = 113/214 (52%), Positives = 141/214 (65%), Gaps = 1/214 (0%)
 Frame = -1

Query: 643 VVEEIQRGWRN-DELVMVRIVEPLRRNMDRAREIVETKTGGLVVWIKRDFLVIYRGEKYG 467
           VV+E++R W + +EL  VRIVEPLRR+MDRAREI+E KTGGLVVW K D   +YRG KY 
Sbjct: 200 VVKEVRREWASGEELAAVRIVEPLRRSMDRAREILEIKTGGLVVWTKGDMHFVYRGSKYQ 259

Query: 466 MILHTPSCYNAVDQVNLGIFDSNRAIFSVNSGGIMEDMENNIYLTNKNSETQHPVEGSLY 287
                    NA          S+  + +V+     ++ + +I       + + PV+G+LY
Sbjct: 260 Q--------NAKH--------SHTFLTNVHKDDAFQENDQSIC----GQKDEEPVKGTLY 299

Query: 286 EREANRLLDGLGPRFIDWWWRTPMPVDADLLPEVVXXXXXXXXXXXXXXRVKLTDDELTY 107
           ERE NRLLD LGPRF+DWWW TP+PVDADLLPE V              R  L D+ELTY
Sbjct: 300 EREVNRLLDTLGPRFVDWWWDTPLPVDADLLPEFVPGSKTPYRLCPPGVRPTLADEELTY 359

Query: 106 LRKLARSLPTHFALGRNTKLQGLASSIIKLWKKS 5
           LRKLAR LPTHFALGRNT+LQGLA++I+KLW+KS
Sbjct: 360 LRKLARLLPTHFALGRNTRLQGLAAAILKLWEKS 393


>ref|XP_006842364.1| hypothetical protein AMTR_s00079p00185530 [Amborella trichopoda]
           gi|548844430|gb|ERN04039.1| hypothetical protein
           AMTR_s00079p00185530 [Amborella trichopoda]
          Length = 886

 Score =  204 bits (520), Expect = 1e-50
 Identities = 111/213 (52%), Positives = 140/213 (65%)
 Frame = -1

Query: 643 VVEEIQRGWRNDELVMVRIVEPLRRNMDRAREIVETKTGGLVVWIKRDFLVIYRGEKYGM 464
           V+ EI   W+  EL M++   PL RNMDRA EIVETKTGGLVVW K+  LV+YRG  Y  
Sbjct: 362 VMNEIYAVWKKRELAMLKFDVPLCRNMDRATEIVETKTGGLVVWRKKGTLVVYRGTNY-- 419

Query: 463 ILHTPSCYNAVDQVNLGIFDSNRAIFSVNSGGIMEDMENNIYLTNKNSETQHPVEGSLYE 284
             H+ S  +  +  +L +FD N+   S  +G +    +  IY    +   +     +L+E
Sbjct: 420 --HSLSKTSETNPWSLELFDDNK--ISAPNGFLNFKDDTMIYQAGSDGLMKE----TLFE 471

Query: 283 REANRLLDGLGPRFIDWWWRTPMPVDADLLPEVVXXXXXXXXXXXXXXRVKLTDDELTYL 104
           REANRLLD LGPRFIDWWW TP+PVDADLLPEV+              + KLTD+ELTYL
Sbjct: 472 REANRLLDELGPRFIDWWWSTPLPVDADLLPEVIPNFRPPLRLCPPHMQSKLTDEELTYL 531

Query: 103 RKLARSLPTHFALGRNTKLQGLASSIIKLWKKS 5
           RK A+ LPTHFALG+NTKLQGLA++I+KLW+KS
Sbjct: 532 RKFAKHLPTHFALGKNTKLQGLAAAILKLWEKS 564


>ref|XP_003573775.1| PREDICTED: chloroplastic group IIA intron splicing facilitator
           CRS1, chloroplastic-like [Brachypodium distachyon]
          Length = 730

 Score =  204 bits (518), Expect = 2e-50
 Identities = 115/222 (51%), Positives = 143/222 (64%), Gaps = 9/222 (4%)
 Frame = -1

Query: 643 VVEEIQRGWRN-DELVMVRIVEPLRRNMDRAREIVETKTGGLVVWIKRDFLVIYRGEKYG 467
           VVE+++  W +  EL  VRIVEPLRR MDRAREI+E KTGGLVVW K D   +YRG  Y 
Sbjct: 193 VVEDVRSEWSSGQELAGVRIVEPLRRCMDRAREILEIKTGGLVVWTKGDIHFVYRGSDY- 251

Query: 466 MILHTPSCYNAVDQVNL-----GIFDSNRAIFSVNSG---GIMEDMENNIYLTNKNSETQ 311
            + +    +N V  +         + SN  +   ++G   G   + +++I +       +
Sbjct: 252 -VHNMKYSHNFVADIQKVRTPQEKYKSNVELLGKHNGKAKGAFREKDSSIDIQTY----E 306

Query: 310 HPVEGSLYEREANRLLDGLGPRFIDWWWRTPMPVDADLLPEVVXXXXXXXXXXXXXXRVK 131
            PV+G+LYERE NRLLD LGPRFIDWWW TP+PVDADLLPEVV              R  
Sbjct: 307 EPVKGTLYEREVNRLLDSLGPRFIDWWWNTPLPVDADLLPEVVLGFKTPFRQCPPGVRPT 366

Query: 130 LTDDELTYLRKLARSLPTHFALGRNTKLQGLASSIIKLWKKS 5
           L D+ELTYLRKLAR LP HFALGRNTKLQGLA++I+KLW+KS
Sbjct: 367 LADEELTYLRKLARPLPAHFALGRNTKLQGLAAAILKLWEKS 408


>gb|EOY04147.1| maize chloroplast splicing factor CRS1, putative isoform 5
           [Theobroma cacao]
          Length = 788

 Score =  201 bits (512), Expect = 1e-49
 Identities = 115/234 (49%), Positives = 142/234 (60%), Gaps = 21/234 (8%)
 Frame = -1

Query: 643 VVEEIQRGWRNDELVMVRIVEPLRRNMDRAREIVETKTGGLVVWIKRDFLVIYRGEKYGM 464
           VV+EI+  WR +ELVMV+   PL RNMDRAREI+E KT GLVVW K+D LV+YRG  +G+
Sbjct: 249 VVDEIKLAWRKNELVMVKFGVPLCRNMDRAREIIEMKTRGLVVWGKKDALVVYRGCSHGL 308

Query: 463 I-----LHTPSCYNAVD-------------QVNLGIFDSNRAIFSVNSGGIMEDMENN-- 344
                 +  P C +  +              +N+ +   N +  ++ SG   ED E    
Sbjct: 309 TSKISSMKYPRCADGQEISSSTFSHLTSSNNINMSLEKFNGS--TLQSGLYREDREKESM 366

Query: 343 -IYLTNKNSETQHPVEGSLYEREANRLLDGLGPRFIDWWWRTPMPVDADLLPEVVXXXXX 167
            I +  K  E   PV GSLYERE +RLLDGLGPRFIDWW R P+P+DADLLPE V     
Sbjct: 367 PINIFMKEDENNQPVIGSLYERETDRLLDGLGPRFIDWWMRKPLPIDADLLPEEVPGFRP 426

Query: 166 XXXXXXXXXRVKLTDDELTYLRKLARSLPTHFALGRNTKLQGLASSIIKLWKKS 5
                    R  LTDDEL YLRKL   LP HFALG+N  LQGLA++I+KLW+KS
Sbjct: 427 PLRLSPPNTRPNLTDDELKYLRKLTHPLPFHFALGKNRNLQGLAAAILKLWEKS 480


>gb|EOY04146.1| maize chloroplast splicing factor CRS1, putative isoform 4
           [Theobroma cacao]
          Length = 767

 Score =  201 bits (512), Expect = 1e-49
 Identities = 115/234 (49%), Positives = 142/234 (60%), Gaps = 21/234 (8%)
 Frame = -1

Query: 643 VVEEIQRGWRNDELVMVRIVEPLRRNMDRAREIVETKTGGLVVWIKRDFLVIYRGEKYGM 464
           VV+EI+  WR +ELVMV+   PL RNMDRAREI+E KT GLVVW K+D LV+YRG  +G+
Sbjct: 223 VVDEIKLAWRKNELVMVKFGVPLCRNMDRAREIIEMKTRGLVVWGKKDALVVYRGCSHGL 282

Query: 463 I-----LHTPSCYNAVD-------------QVNLGIFDSNRAIFSVNSGGIMEDMENN-- 344
                 +  P C +  +              +N+ +   N +  ++ SG   ED E    
Sbjct: 283 TSKISSMKYPRCADGQEISSSTFSHLTSSNNINMSLEKFNGS--TLQSGLYREDREKESM 340

Query: 343 -IYLTNKNSETQHPVEGSLYEREANRLLDGLGPRFIDWWWRTPMPVDADLLPEVVXXXXX 167
            I +  K  E   PV GSLYERE +RLLDGLGPRFIDWW R P+P+DADLLPE V     
Sbjct: 341 PINIFMKEDENNQPVIGSLYERETDRLLDGLGPRFIDWWMRKPLPIDADLLPEEVPGFRP 400

Query: 166 XXXXXXXXXRVKLTDDELTYLRKLARSLPTHFALGRNTKLQGLASSIIKLWKKS 5
                    R  LTDDEL YLRKL   LP HFALG+N  LQGLA++I+KLW+KS
Sbjct: 401 PLRLSPPNTRPNLTDDELKYLRKLTHPLPFHFALGKNRNLQGLAAAILKLWEKS 454


>gb|EOY04145.1| maize chloroplast splicing factor CRS1, putative isoform 3
           [Theobroma cacao]
          Length = 788

 Score =  201 bits (512), Expect = 1e-49
 Identities = 115/234 (49%), Positives = 142/234 (60%), Gaps = 21/234 (8%)
 Frame = -1

Query: 643 VVEEIQRGWRNDELVMVRIVEPLRRNMDRAREIVETKTGGLVVWIKRDFLVIYRGEKYGM 464
           VV+EI+  WR +ELVMV+   PL RNMDRAREI+E KT GLVVW K+D LV+YRG  +G+
Sbjct: 223 VVDEIKLAWRKNELVMVKFGVPLCRNMDRAREIIEMKTRGLVVWGKKDALVVYRGCSHGL 282

Query: 463 I-----LHTPSCYNAVD-------------QVNLGIFDSNRAIFSVNSGGIMEDMENN-- 344
                 +  P C +  +              +N+ +   N +  ++ SG   ED E    
Sbjct: 283 TSKISSMKYPRCADGQEISSSTFSHLTSSNNINMSLEKFNGS--TLQSGLYREDREKESM 340

Query: 343 -IYLTNKNSETQHPVEGSLYEREANRLLDGLGPRFIDWWWRTPMPVDADLLPEVVXXXXX 167
            I +  K  E   PV GSLYERE +RLLDGLGPRFIDWW R P+P+DADLLPE V     
Sbjct: 341 PINIFMKEDENNQPVIGSLYERETDRLLDGLGPRFIDWWMRKPLPIDADLLPEEVPGFRP 400

Query: 166 XXXXXXXXXRVKLTDDELTYLRKLARSLPTHFALGRNTKLQGLASSIIKLWKKS 5
                    R  LTDDEL YLRKL   LP HFALG+N  LQGLA++I+KLW+KS
Sbjct: 401 PLRLSPPNTRPNLTDDELKYLRKLTHPLPFHFALGKNRNLQGLAAAILKLWEKS 454


>gb|EOY04144.1| maize chloroplast splicing factor CRS1, putative isoform 2
           [Theobroma cacao]
          Length = 804

 Score =  201 bits (512), Expect = 1e-49
 Identities = 115/234 (49%), Positives = 142/234 (60%), Gaps = 21/234 (8%)
 Frame = -1

Query: 643 VVEEIQRGWRNDELVMVRIVEPLRRNMDRAREIVETKTGGLVVWIKRDFLVIYRGEKYGM 464
           VV+EI+  WR +ELVMV+   PL RNMDRAREI+E KT GLVVW K+D LV+YRG  +G+
Sbjct: 249 VVDEIKLAWRKNELVMVKFGVPLCRNMDRAREIIEMKTRGLVVWGKKDALVVYRGCSHGL 308

Query: 463 I-----LHTPSCYNAVD-------------QVNLGIFDSNRAIFSVNSGGIMEDMENN-- 344
                 +  P C +  +              +N+ +   N +  ++ SG   ED E    
Sbjct: 309 TSKISSMKYPRCADGQEISSSTFSHLTSSNNINMSLEKFNGS--TLQSGLYREDREKESM 366

Query: 343 -IYLTNKNSETQHPVEGSLYEREANRLLDGLGPRFIDWWWRTPMPVDADLLPEVVXXXXX 167
            I +  K  E   PV GSLYERE +RLLDGLGPRFIDWW R P+P+DADLLPE V     
Sbjct: 367 PINIFMKEDENNQPVIGSLYERETDRLLDGLGPRFIDWWMRKPLPIDADLLPEEVPGFRP 426

Query: 166 XXXXXXXXXRVKLTDDELTYLRKLARSLPTHFALGRNTKLQGLASSIIKLWKKS 5
                    R  LTDDEL YLRKL   LP HFALG+N  LQGLA++I+KLW+KS
Sbjct: 427 PLRLSPPNTRPNLTDDELKYLRKLTHPLPFHFALGKNRNLQGLAAAILKLWEKS 480


>gb|EOY04143.1| maize chloroplast splicing factor CRS1, putative isoform 1
           [Theobroma cacao]
          Length = 818

 Score =  201 bits (512), Expect = 1e-49
 Identities = 115/234 (49%), Positives = 142/234 (60%), Gaps = 21/234 (8%)
 Frame = -1

Query: 643 VVEEIQRGWRNDELVMVRIVEPLRRNMDRAREIVETKTGGLVVWIKRDFLVIYRGEKYGM 464
           VV+EI+  WR +ELVMV+   PL RNMDRAREI+E KT GLVVW K+D LV+YRG  +G+
Sbjct: 249 VVDEIKLAWRKNELVMVKFGVPLCRNMDRAREIIEMKTRGLVVWGKKDALVVYRGCSHGL 308

Query: 463 I-----LHTPSCYNAVD-------------QVNLGIFDSNRAIFSVNSGGIMEDMENN-- 344
                 +  P C +  +              +N+ +   N +  ++ SG   ED E    
Sbjct: 309 TSKISSMKYPRCADGQEISSSTFSHLTSSNNINMSLEKFNGS--TLQSGLYREDREKESM 366

Query: 343 -IYLTNKNSETQHPVEGSLYEREANRLLDGLGPRFIDWWWRTPMPVDADLLPEVVXXXXX 167
            I +  K  E   PV GSLYERE +RLLDGLGPRFIDWW R P+P+DADLLPE V     
Sbjct: 367 PINIFMKEDENNQPVIGSLYERETDRLLDGLGPRFIDWWMRKPLPIDADLLPEEVPGFRP 426

Query: 166 XXXXXXXXXRVKLTDDELTYLRKLARSLPTHFALGRNTKLQGLASSIIKLWKKS 5
                    R  LTDDEL YLRKL   LP HFALG+N  LQGLA++I+KLW+KS
Sbjct: 427 PLRLSPPNTRPNLTDDELKYLRKLTHPLPFHFALGKNRNLQGLAAAILKLWEKS 480


>ref|NP_001061635.1| Os08g0360100 [Oryza sativa Japonica Group]
           gi|75132343|sp|Q6YYA3.1|CRS1_ORYSJ RecName:
           Full=Chloroplastic group IIA intron splicing facilitator
           CRS1, chloroplastic; AltName: Full=Chloroplastic RNA
           splicing factor 1; AltName: Full=Protein CHLOROPLAST RNA
           SPLICING 1; Flags: Precursor gi|38637564|dbj|BAD03815.1|
           putative CRS1 [Oryza sativa Japonica Group]
           gi|113623604|dbj|BAF23549.1| Os08g0360100 [Oryza sativa
           Japonica Group]
          Length = 725

 Score =  200 bits (509), Expect = 3e-49
 Identities = 115/218 (52%), Positives = 135/218 (61%), Gaps = 5/218 (2%)
 Frame = -1

Query: 643 VVEEIQRGW-RNDELVMVRIVEPLRRNMDRAREIVETKTGGLVVWIKRDFLVIYRGEKYG 467
           VVEE++  W +  EL  VRIVEPLRR MDRAREI+E KTGGLVVW +     +YRG  Y 
Sbjct: 185 VVEEVRGQWAKGQELAGVRIVEPLRRCMDRAREILEIKTGGLVVWTRGGIHFVYRGSSY- 243

Query: 466 MILHTPSCYNAVDQVNLGIFDSNRAIFSVNSGGIMEDMENNIYLTNKNSETQH----PVE 299
                 +     D VN    +    + S N     +    +  LTN N E       P++
Sbjct: 244 ----LENAKRHRDFVNYN--EELSPVTSNNPTSQGKYWSKDETLTNDNDEADDKDDKPIK 297

Query: 298 GSLYEREANRLLDGLGPRFIDWWWRTPMPVDADLLPEVVXXXXXXXXXXXXXXRVKLTDD 119
           G+LYERE NRLLD LGPRFIDWWW TP+PVDADLLPEVV              R  L D+
Sbjct: 298 GTLYEREVNRLLDSLGPRFIDWWWNTPLPVDADLLPEVVPDFKTPFRQCPPGVRPALADE 357

Query: 118 ELTYLRKLARSLPTHFALGRNTKLQGLASSIIKLWKKS 5
           ELTYLRK AR LPTHF LGRNTKLQGLA++I+KLW+KS
Sbjct: 358 ELTYLRKHARPLPTHFVLGRNTKLQGLAAAILKLWEKS 395


>gb|EEE68561.1| hypothetical protein OsJ_27045 [Oryza sativa Japonica Group]
          Length = 725

 Score =  200 bits (509), Expect = 3e-49
 Identities = 115/218 (52%), Positives = 135/218 (61%), Gaps = 5/218 (2%)
 Frame = -1

Query: 643 VVEEIQRGW-RNDELVMVRIVEPLRRNMDRAREIVETKTGGLVVWIKRDFLVIYRGEKYG 467
           VVEE++  W +  EL  VRIVEPLRR MDRAREI+E KTGGLVVW +     +YRG  Y 
Sbjct: 185 VVEEVRGQWAKGQELAGVRIVEPLRRCMDRAREILEIKTGGLVVWTRGGIHFVYRGSSY- 243

Query: 466 MILHTPSCYNAVDQVNLGIFDSNRAIFSVNSGGIMEDMENNIYLTNKNSETQH----PVE 299
                 +     D VN    +    + S N     +    +  LTN N E       P++
Sbjct: 244 ----LENAKRHRDFVNYN--EELSPVTSNNPTSQGKYWSKDETLTNDNDEADDKDDKPIK 297

Query: 298 GSLYEREANRLLDGLGPRFIDWWWRTPMPVDADLLPEVVXXXXXXXXXXXXXXRVKLTDD 119
           G+LYERE NRLLD LGPRFIDWWW TP+PVDADLLPEVV              R  L D+
Sbjct: 298 GTLYEREVNRLLDSLGPRFIDWWWNTPLPVDADLLPEVVPDFKTPFRQCPPGVRPALADE 357

Query: 118 ELTYLRKLARSLPTHFALGRNTKLQGLASSIIKLWKKS 5
           ELTYLRK AR LPTHF LGRNTKLQGLA++I+KLW+KS
Sbjct: 358 ELTYLRKHARPLPTHFVLGRNTKLQGLAAAILKLWEKS 395


>dbj|BAJ86158.1| predicted protein [Hordeum vulgare subsp. vulgare]
          Length = 730

 Score =  200 bits (508), Expect = 3e-49
 Identities = 114/223 (51%), Positives = 137/223 (61%), Gaps = 10/223 (4%)
 Frame = -1

Query: 643 VVEEIQRGWRN-DELVMVRIVEPLRRNMDRAREIVETKTGGLVVWIKRDFLVIYRGEKY- 470
           VVE++ R W    EL  VR+VEPLRR MDRAREI+E K+GGLVVW K D   +YRG  Y 
Sbjct: 185 VVEDVCRVWSGGQELAAVRVVEPLRRCMDRAREILEIKSGGLVVWTKGDVHFVYRGSSYL 244

Query: 469 GMILHTPSCYNAVDQVNLGIFDS--------NRAIFSVNSGGIMEDMENNIYLTNKNSET 314
             I H       + +V L    +        + A  S N       +   I  +      
Sbjct: 245 ENIKHRQKSIADIQRVPLEKCTAPGPQWKHESNAEPSTNHNDDAHGVFRGIDPSLAVHAY 304

Query: 313 QHPVEGSLYEREANRLLDGLGPRFIDWWWRTPMPVDADLLPEVVXXXXXXXXXXXXXXRV 134
           + PVEG+LYERE NRLLD LGPRF+DWWW TP+PVDADLLPEVV              R 
Sbjct: 305 EEPVEGTLYEREVNRLLDSLGPRFVDWWWNTPLPVDADLLPEVVPGFKTPFRQCPPGVRP 364

Query: 133 KLTDDELTYLRKLARSLPTHFALGRNTKLQGLASSIIKLWKKS 5
            L D+ELTYLRKLAR LPTHFALGRNT+LQGLA++++KLW+KS
Sbjct: 365 TLADEELTYLRKLARPLPTHFALGRNTRLQGLAAAVLKLWEKS 407


>dbj|BAJ90288.1| predicted protein [Hordeum vulgare subsp. vulgare]
          Length = 630

 Score =  200 bits (508), Expect = 3e-49
 Identities = 114/223 (51%), Positives = 137/223 (61%), Gaps = 10/223 (4%)
 Frame = -1

Query: 643 VVEEIQRGWRN-DELVMVRIVEPLRRNMDRAREIVETKTGGLVVWIKRDFLVIYRGEKY- 470
           VVE++ R W    EL  VR+VEPLRR MDRAREI+E K+GGLVVW K D   +YRG  Y 
Sbjct: 185 VVEDVCRVWSGGQELAAVRVVEPLRRCMDRAREILEIKSGGLVVWTKGDVHFVYRGSSYL 244

Query: 469 GMILHTPSCYNAVDQVNLGIFDS--------NRAIFSVNSGGIMEDMENNIYLTNKNSET 314
             I H       + +V L    +        + A  S N       +   I  +      
Sbjct: 245 ENIKHRQKSIADIQRVPLEKCTAPGPQWKHESNAEPSTNHNDDAHGVFRGIDPSLAVHAY 304

Query: 313 QHPVEGSLYEREANRLLDGLGPRFIDWWWRTPMPVDADLLPEVVXXXXXXXXXXXXXXRV 134
           + PVEG+LYERE NRLLD LGPRF+DWWW TP+PVDADLLPEVV              R 
Sbjct: 305 EEPVEGTLYEREVNRLLDSLGPRFVDWWWNTPLPVDADLLPEVVPGFKTPFRQCPPGVRP 364

Query: 133 KLTDDELTYLRKLARSLPTHFALGRNTKLQGLASSIIKLWKKS 5
            L D+ELTYLRKLAR LPTHFALGRNT+LQGLA++++KLW+KS
Sbjct: 365 TLADEELTYLRKLARPLPTHFALGRNTRLQGLAAAVLKLWEKS 407


>ref|XP_006357840.1| PREDICTED: chloroplastic group IIA intron splicing facilitator
           CRS1, chloroplastic-like [Solanum tuberosum]
          Length = 802

 Score =  199 bits (507), Expect = 4e-49
 Identities = 112/217 (51%), Positives = 139/217 (64%), Gaps = 5/217 (2%)
 Frame = -1

Query: 643 VVEEIQRGWRNDELVMVRIVEPLRRNMDRAREIVETKTGGLVVWIKRDFLVIYRGEKYGM 464
           VV++I   W+N+EL M++   PL RNMDRAREIVE KTGG VVW+K++ LV+YRG  Y +
Sbjct: 271 VVDQIHFIWKNNELAMLKFDLPLCRNMDRAREIVEMKTGGFVVWMKQNALVVYRGCSYTL 330

Query: 463 ----ILHTPSCYNAVDQVNLGIFDSNRAIFS-VNSGGIMEDMENNIYLTNKNSETQHPVE 299
               + H   C +        I     +IFS +NS G  ED    +     + E    + 
Sbjct: 331 QQKELQHDFLCSHQNSSFTENI--KQTSIFSPLNSSGSSED---EMISVGNSEEDSLAMN 385

Query: 298 GSLYEREANRLLDGLGPRFIDWWWRTPMPVDADLLPEVVXXXXXXXXXXXXXXRVKLTDD 119
            SLY REANRLLD LGPR++DWWW  P+PV+ADLLPEVV              R KLTDD
Sbjct: 386 ESLYVREANRLLDDLGPRYVDWWWPKPLPVNADLLPEVVPGFKPPFRLCPPRSRSKLTDD 445

Query: 118 ELTYLRKLARSLPTHFALGRNTKLQGLASSIIKLWKK 8
           ELT LRKLARSLPTHF LGRN KLQGLA++++KLW+K
Sbjct: 446 ELTQLRKLARSLPTHFVLGRNRKLQGLAAAVVKLWEK 482