BLASTX nr result
ID: Zingiber24_contig00004546
seq
BLASTX 2.2.25 [Feb-01-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= Zingiber24_contig00004546
(202 letters)
Database: ./nr
37,332,560 sequences; 13,225,080,153 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
ref|XP_003602364.1| RNA-binding protein [Medicago truncatula] gi... 70 4e-10
ref|XP_003602366.1| RNA-binding protein [Medicago truncatula] gi... 68 1e-09
ref|XP_003602365.1| RNA-binding protein [Medicago truncatula] gi... 68 1e-09
ref|XP_004502748.1| PREDICTED: pre-mRNA-splicing factor SF2-like... 68 1e-09
ref|XP_004502743.1| PREDICTED: pre-mRNA-splicing factor SF2-like... 68 1e-09
gb|EMT26128.1| Pre-mRNA-splicing factor SF2 [Aegilops tauschii] 65 7e-09
ref|XP_006581683.1| PREDICTED: pre-mRNA-splicing factor SF2-like... 65 9e-09
ref|XP_006581682.1| PREDICTED: pre-mRNA-splicing factor SF2-like... 65 9e-09
ref|XP_006581678.1| PREDICTED: pre-mRNA-splicing factor SF2-like... 65 9e-09
ref|XP_006577814.1| PREDICTED: uncharacterized protein LOC100786... 65 9e-09
ref|XP_006374084.1| hypothetical protein POPTR_0015s00690g [Popu... 65 9e-09
gb|EMJ20418.1| hypothetical protein PRUPE_ppa017674mg, partial [... 65 9e-09
ref|XP_006577812.1| PREDICTED: uncharacterized protein LOC100786... 65 9e-09
ref|XP_003526756.1| PREDICTED: pre-mRNA-splicing factor SF2-like... 65 9e-09
gb|ACU24484.1| unknown [Glycine max] 65 9e-09
ref|NP_001242110.1| uncharacterized protein LOC100786491 [Glycin... 65 9e-09
gb|ESW08439.1| hypothetical protein PHAVU_009G046000g [Phaseolus... 65 1e-08
gb|EXC10292.1| Pre-mRNA-splicing factor SF2 [Morus notabilis] 64 2e-08
gb|ABR18062.1| unknown [Picea sitchensis] 64 2e-08
ref|XP_006376671.1| pre-mRNA splicing factor family protein [Pop... 64 2e-08
>ref|XP_003602364.1| RNA-binding protein [Medicago truncatula]
gi|355491412|gb|AES72615.1| RNA-binding protein
[Medicago truncatula]
Length = 380
Score = 69.7 bits (169), Expect = 4e-10
Identities = 33/46 (71%), Positives = 38/46 (82%)
Frame = -3
Query: 140 FTVATMSSRLSRTLYVGNLPIDIRESEVEDLFRKYGHIVEIQLKNP 3
F + MSSR SRT+YVGNLP DIRESE+EDLF KYG I+EI+LK P
Sbjct: 103 FLQSNMSSRFSRTIYVGNLPADIRESEIEDLFYKYGRIMEIELKVP 148
>ref|XP_003602366.1| RNA-binding protein [Medicago truncatula]
gi|355491414|gb|AES72617.1| RNA-binding protein
[Medicago truncatula]
Length = 273
Score = 68.2 bits (165), Expect = 1e-09
Identities = 32/41 (78%), Positives = 36/41 (87%)
Frame = -3
Query: 125 MSSRLSRTLYVGNLPIDIRESEVEDLFRKYGHIVEIQLKNP 3
MSSR SRT+YVGNLP DIRESE+EDLF KYG I+EI+LK P
Sbjct: 1 MSSRFSRTIYVGNLPADIRESEIEDLFYKYGRIMEIELKVP 41
>ref|XP_003602365.1| RNA-binding protein [Medicago truncatula]
gi|355491413|gb|AES72616.1| RNA-binding protein
[Medicago truncatula]
Length = 272
Score = 68.2 bits (165), Expect = 1e-09
Identities = 32/41 (78%), Positives = 36/41 (87%)
Frame = -3
Query: 125 MSSRLSRTLYVGNLPIDIRESEVEDLFRKYGHIVEIQLKNP 3
MSSR SRT+YVGNLP DIRESE+EDLF KYG I+EI+LK P
Sbjct: 1 MSSRFSRTIYVGNLPADIRESEIEDLFYKYGRIMEIELKVP 41
>ref|XP_004502748.1| PREDICTED: pre-mRNA-splicing factor SF2-like isoform X6 [Cicer
arietinum]
Length = 272
Score = 67.8 bits (164), Expect = 1e-09
Identities = 32/41 (78%), Positives = 36/41 (87%)
Frame = -3
Query: 125 MSSRLSRTLYVGNLPIDIRESEVEDLFRKYGHIVEIQLKNP 3
MSSR SRT+YVGNLP DIRESE+EDLF KYG I+EI+LK P
Sbjct: 1 MSSRFSRTIYVGNLPSDIRESEIEDLFYKYGRIMEIELKVP 41
>ref|XP_004502743.1| PREDICTED: pre-mRNA-splicing factor SF2-like isoform X1 [Cicer
arietinum] gi|502136595|ref|XP_004502744.1| PREDICTED:
pre-mRNA-splicing factor SF2-like isoform X2 [Cicer
arietinum] gi|502136597|ref|XP_004502745.1| PREDICTED:
pre-mRNA-splicing factor SF2-like isoform X3 [Cicer
arietinum] gi|502136599|ref|XP_004502746.1| PREDICTED:
pre-mRNA-splicing factor SF2-like isoform X4 [Cicer
arietinum] gi|502136601|ref|XP_004502747.1| PREDICTED:
pre-mRNA-splicing factor SF2-like isoform X5 [Cicer
arietinum]
Length = 273
Score = 67.8 bits (164), Expect = 1e-09
Identities = 32/41 (78%), Positives = 36/41 (87%)
Frame = -3
Query: 125 MSSRLSRTLYVGNLPIDIRESEVEDLFRKYGHIVEIQLKNP 3
MSSR SRT+YVGNLP DIRESE+EDLF KYG I+EI+LK P
Sbjct: 1 MSSRFSRTIYVGNLPSDIRESEIEDLFYKYGRIMEIELKVP 41
>gb|EMT26128.1| Pre-mRNA-splicing factor SF2 [Aegilops tauschii]
Length = 268
Score = 65.5 bits (158), Expect = 7e-09
Identities = 38/66 (57%), Positives = 40/66 (60%), Gaps = 8/66 (12%)
Frame = -3
Query: 176 SCSVPAFLLGTIFTVAT--------MSSRLSRTLYVGNLPIDIRESEVEDLFRKYGHIVE 21
SC +P F L A MS R SRT+YVGNLP DIRE EVEDLF KYG IVE
Sbjct: 19 SCMLPTFHLANTAARAAVGCSKQGRMSRRWSRTIYVGNLPGDIREREVEDLFYKYGRIVE 78
Query: 20 IQLKNP 3
I LK P
Sbjct: 79 IDLKVP 84
>ref|XP_006581683.1| PREDICTED: pre-mRNA-splicing factor SF2-like isoform X7 [Glycine
max]
Length = 262
Score = 65.1 bits (157), Expect = 9e-09
Identities = 30/41 (73%), Positives = 35/41 (85%)
Frame = -3
Query: 125 MSSRLSRTLYVGNLPIDIRESEVEDLFRKYGHIVEIQLKNP 3
MS R SRT+YVGNLP DIRESE+EDLF KYG I++I+LK P
Sbjct: 1 MSGRFSRTIYVGNLPSDIRESEIEDLFYKYGRIMDIELKVP 41
>ref|XP_006581682.1| PREDICTED: pre-mRNA-splicing factor SF2-like isoform X6 [Glycine
max]
Length = 299
Score = 65.1 bits (157), Expect = 9e-09
Identities = 30/41 (73%), Positives = 35/41 (85%)
Frame = -3
Query: 125 MSSRLSRTLYVGNLPIDIRESEVEDLFRKYGHIVEIQLKNP 3
MS R SRT+YVGNLP DIRESE+EDLF KYG I++I+LK P
Sbjct: 1 MSGRFSRTIYVGNLPSDIRESEIEDLFYKYGRIMDIELKVP 41
>ref|XP_006581678.1| PREDICTED: pre-mRNA-splicing factor SF2-like isoform X2 [Glycine
max] gi|571460367|ref|XP_006581679.1| PREDICTED:
pre-mRNA-splicing factor SF2-like isoform X3 [Glycine
max] gi|571460369|ref|XP_006581680.1| PREDICTED:
pre-mRNA-splicing factor SF2-like isoform X4 [Glycine
max] gi|571460371|ref|XP_006581681.1| PREDICTED:
pre-mRNA-splicing factor SF2-like isoform X5 [Glycine
max]
Length = 300
Score = 65.1 bits (157), Expect = 9e-09
Identities = 30/41 (73%), Positives = 35/41 (85%)
Frame = -3
Query: 125 MSSRLSRTLYVGNLPIDIRESEVEDLFRKYGHIVEIQLKNP 3
MS R SRT+YVGNLP DIRESE+EDLF KYG I++I+LK P
Sbjct: 1 MSGRFSRTIYVGNLPSDIRESEIEDLFYKYGRIMDIELKVP 41
>ref|XP_006577814.1| PREDICTED: uncharacterized protein LOC100786491 isoform X3 [Glycine
max]
Length = 266
Score = 65.1 bits (157), Expect = 9e-09
Identities = 30/41 (73%), Positives = 35/41 (85%)
Frame = -3
Query: 125 MSSRLSRTLYVGNLPIDIRESEVEDLFRKYGHIVEIQLKNP 3
MS R SRT+YVGNLP DIRESE+EDLF KYG I++I+LK P
Sbjct: 1 MSGRFSRTIYVGNLPSDIRESEIEDLFYKYGRIMDIELKVP 41
>ref|XP_006374084.1| hypothetical protein POPTR_0015s00690g [Populus trichocarpa]
gi|550321685|gb|ERP51881.1| hypothetical protein
POPTR_0015s00690g [Populus trichocarpa]
Length = 260
Score = 65.1 bits (157), Expect = 9e-09
Identities = 29/41 (70%), Positives = 35/41 (85%)
Frame = -3
Query: 125 MSSRLSRTLYVGNLPIDIRESEVEDLFRKYGHIVEIQLKNP 3
MS R SRT+YVGNLP DIRESE+EDLF KYG I++++LK P
Sbjct: 1 MSGRFSRTIYVGNLPADIRESEIEDLFYKYGRILDVELKIP 41
>gb|EMJ20418.1| hypothetical protein PRUPE_ppa017674mg, partial [Prunus persica]
Length = 252
Score = 65.1 bits (157), Expect = 9e-09
Identities = 31/41 (75%), Positives = 35/41 (85%)
Frame = -3
Query: 125 MSSRLSRTLYVGNLPIDIRESEVEDLFRKYGHIVEIQLKNP 3
MS R SRT+YVGNLP DIRESEVE+LF KYG IV+I+LK P
Sbjct: 1 MSGRFSRTIYVGNLPSDIRESEVEELFYKYGRIVDIELKIP 41
>ref|XP_006577812.1| PREDICTED: uncharacterized protein LOC100786491 isoform X1 [Glycine
max] gi|571448372|ref|XP_006577813.1| PREDICTED:
uncharacterized protein LOC100786491 isoform X2 [Glycine
max]
Length = 267
Score = 65.1 bits (157), Expect = 9e-09
Identities = 30/41 (73%), Positives = 35/41 (85%)
Frame = -3
Query: 125 MSSRLSRTLYVGNLPIDIRESEVEDLFRKYGHIVEIQLKNP 3
MS R SRT+YVGNLP DIRESE+EDLF KYG I++I+LK P
Sbjct: 1 MSGRFSRTIYVGNLPSDIRESEIEDLFYKYGRIMDIELKVP 41
>ref|XP_003526756.1| PREDICTED: pre-mRNA-splicing factor SF2-like isoform X1 [Glycine
max]
Length = 263
Score = 65.1 bits (157), Expect = 9e-09
Identities = 30/41 (73%), Positives = 35/41 (85%)
Frame = -3
Query: 125 MSSRLSRTLYVGNLPIDIRESEVEDLFRKYGHIVEIQLKNP 3
MS R SRT+YVGNLP DIRESE+EDLF KYG I++I+LK P
Sbjct: 1 MSGRFSRTIYVGNLPSDIRESEIEDLFYKYGRIMDIELKVP 41
>gb|ACU24484.1| unknown [Glycine max]
Length = 267
Score = 65.1 bits (157), Expect = 9e-09
Identities = 30/41 (73%), Positives = 35/41 (85%)
Frame = -3
Query: 125 MSSRLSRTLYVGNLPIDIRESEVEDLFRKYGHIVEIQLKNP 3
MS R SRT+YVGNLP DIRESE+EDLF KYG I++I+LK P
Sbjct: 1 MSGRFSRTIYVGNLPSDIRESEIEDLFYKYGRIMDIELKVP 41
>ref|NP_001242110.1| uncharacterized protein LOC100786491 [Glycine max]
gi|255636783|gb|ACU18725.1| unknown [Glycine max]
Length = 267
Score = 65.1 bits (157), Expect = 9e-09
Identities = 30/41 (73%), Positives = 35/41 (85%)
Frame = -3
Query: 125 MSSRLSRTLYVGNLPIDIRESEVEDLFRKYGHIVEIQLKNP 3
MS R SRT+YVGNLP DIRESE+EDLF KYG I++I+LK P
Sbjct: 1 MSGRFSRTIYVGNLPSDIRESEIEDLFYKYGRIMDIELKVP 41
>gb|ESW08439.1| hypothetical protein PHAVU_009G046000g [Phaseolus vulgaris]
gi|561009533|gb|ESW08440.1| hypothetical protein
PHAVU_009G046000g [Phaseolus vulgaris]
Length = 260
Score = 64.7 bits (156), Expect = 1e-08
Identities = 29/41 (70%), Positives = 35/41 (85%)
Frame = -3
Query: 125 MSSRLSRTLYVGNLPIDIRESEVEDLFRKYGHIVEIQLKNP 3
MS R SRT+YVGNLP DIRESE+EDLF KYG +++I+LK P
Sbjct: 1 MSGRFSRTIYVGNLPSDIRESEIEDLFYKYGRVMDIELKIP 41
>gb|EXC10292.1| Pre-mRNA-splicing factor SF2 [Morus notabilis]
Length = 389
Score = 64.3 bits (155), Expect = 2e-08
Identities = 33/41 (80%), Positives = 33/41 (80%)
Frame = -3
Query: 125 MSSRLSRTLYVGNLPIDIRESEVEDLFRKYGHIVEIQLKNP 3
MSSR SRTLYVGNLP DIRE EVEDLF KYG IV I LK P
Sbjct: 1 MSSRASRTLYVGNLPGDIREREVEDLFYKYGRIVHIDLKVP 41
>gb|ABR18062.1| unknown [Picea sitchensis]
Length = 331
Score = 64.3 bits (155), Expect = 2e-08
Identities = 33/41 (80%), Positives = 34/41 (82%)
Frame = -3
Query: 125 MSSRLSRTLYVGNLPIDIRESEVEDLFRKYGHIVEIQLKNP 3
MSSR SRTLYVGNLP DIRE EVEDLF KYG IV+I LK P
Sbjct: 1 MSSRASRTLYVGNLPGDIREREVEDLFYKYGPIVDIDLKIP 41
>ref|XP_006376671.1| pre-mRNA splicing factor family protein [Populus trichocarpa]
gi|550326255|gb|ERP54468.1| pre-mRNA splicing factor
family protein [Populus trichocarpa]
Length = 279
Score = 63.9 bits (154), Expect = 2e-08
Identities = 29/41 (70%), Positives = 35/41 (85%)
Frame = -3
Query: 125 MSSRLSRTLYVGNLPIDIRESEVEDLFRKYGHIVEIQLKNP 3
MS R SRT+YVGNLP DIRES+VEDLF KYG I++++LK P
Sbjct: 1 MSGRFSRTIYVGNLPADIRESKVEDLFYKYGRILDVELKIP 41