BLASTX nr result
ID: Zingiber24_contig00003477
seq
BLASTX 2.2.25 [Feb-01-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= Zingiber24_contig00003477
(559 letters)
Database: ./nr
37,332,560 sequences; 13,225,080,153 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
sp|P40621.1|HMGL_WHEAT RecName: Full=HMG1/2-like protein gi|2180... 60 5e-07
gb|EMT12582.1| HMG1/2-like protein [Aegilops tauschii] 60 5e-07
gb|AEX55234.1| HMG transcription factor [Allium sativum] 60 5e-07
tpg|DAA40705.1| TPA: hypothetical protein ZEAMMB73_374315 [Zea m... 59 6e-07
tpg|DAA40704.1| TPA: hypothetical protein ZEAMMB73_374315 [Zea m... 59 6e-07
gb|ACR37707.1| unknown [Zea mays] gi|414590135|tpg|DAA40706.1| T... 59 6e-07
ref|NP_001151148.1| LOC100284781 [Zea mays] gi|195644628|gb|ACG4... 59 6e-07
gb|AFK40425.1| unknown [Lotus japonicus] 59 8e-07
ref|XP_004966522.1| PREDICTED: DNA-binding protein MNB1B-like [S... 59 1e-06
ref|XP_006656519.1| PREDICTED: DNA-binding protein MNB1B-like [O... 58 2e-06
gb|EMJ03926.1| hypothetical protein PRUPE_ppa012972mg [Prunus pe... 58 2e-06
ref|XP_004957577.1| PREDICTED: HMG1/2-like protein-like [Setaria... 57 3e-06
ref|XP_002270185.1| PREDICTED: high mobility group B protein 1 i... 57 3e-06
ref|XP_002269398.1| PREDICTED: high mobility group B protein 1 i... 57 3e-06
ref|NP_001058640.1| Os06g0728000 [Oryza sativa Japonica Group] g... 57 4e-06
gb|EOY07227.1| High mobility group B1 isoform 5 [Theobroma cacao... 57 4e-06
gb|EOY07225.1| High mobility group B1 isoform 3 [Theobroma cacao... 57 4e-06
gb|EOY07224.1| High mobility group B1 isoform 2, partial [Theobr... 57 4e-06
gb|EOY07223.1| High mobility group B1, putative isoform 1 [Theob... 57 4e-06
gb|AFK36830.1| unknown [Medicago truncatula] 57 4e-06
>sp|P40621.1|HMGL_WHEAT RecName: Full=HMG1/2-like protein gi|21803|emb|CAA77641.1| high
mobility group protein [Triticum aestivum]
gi|114145392|dbj|BAF30985.1| high mobility globular
protein [Triticum aestivum] gi|474386176|gb|EMS64958.1|
HMG1/2-like protein [Triticum urartu]
Length = 161
Score = 59.7 bits (143), Expect = 5e-07
Identities = 26/42 (61%), Positives = 32/42 (76%)
Frame = +3
Query: 3 KWKSLSEDEKAPYVAKAARLKSDYTKTMAAYNKAQSGGGSRP 128
+WKSLSE EKAPYVAKA +LK +Y K +AAYNK +S + P
Sbjct: 80 RWKSLSESEKAPYVAKANKLKGEYNKAIAAYNKGESAAAAAP 121
>gb|EMT12582.1| HMG1/2-like protein [Aegilops tauschii]
Length = 161
Score = 59.7 bits (143), Expect = 5e-07
Identities = 26/42 (61%), Positives = 32/42 (76%)
Frame = +3
Query: 3 KWKSLSEDEKAPYVAKAARLKSDYTKTMAAYNKAQSGGGSRP 128
+WKSLSE EKAPYVAKA +LK +Y K +AAYNK +S + P
Sbjct: 80 RWKSLSESEKAPYVAKANKLKGEYNKAIAAYNKGESAAAAAP 121
>gb|AEX55234.1| HMG transcription factor [Allium sativum]
Length = 115
Score = 59.7 bits (143), Expect = 5e-07
Identities = 28/41 (68%), Positives = 33/41 (80%)
Frame = +3
Query: 3 KWKSLSEDEKAPYVAKAARLKSDYTKTMAAYNKAQSGGGSR 125
KWKSL+ EKAPY AKAA+ K++YTKTMAAYNK S G S+
Sbjct: 40 KWKSLTAAEKAPYEAKAAKRKAEYTKTMAAYNKKLSDGASK 80
>tpg|DAA40705.1| TPA: hypothetical protein ZEAMMB73_374315 [Zea mays]
Length = 120
Score = 59.3 bits (142), Expect = 6e-07
Identities = 27/38 (71%), Positives = 31/38 (81%)
Frame = +3
Query: 6 WKSLSEDEKAPYVAKAARLKSDYTKTMAAYNKAQSGGG 119
WKSLS+ EKAPYV+KA +LK +YTK M AYN QSGGG
Sbjct: 67 WKSLSDAEKAPYVSKAEKLKVEYTKKMDAYNNKQSGGG 104
>tpg|DAA40704.1| TPA: hypothetical protein ZEAMMB73_374315 [Zea mays]
Length = 140
Score = 59.3 bits (142), Expect = 6e-07
Identities = 27/38 (71%), Positives = 31/38 (81%)
Frame = +3
Query: 6 WKSLSEDEKAPYVAKAARLKSDYTKTMAAYNKAQSGGG 119
WKSLS+ EKAPYV+KA +LK +YTK M AYN QSGGG
Sbjct: 87 WKSLSDAEKAPYVSKAEKLKVEYTKKMDAYNNKQSGGG 124
>gb|ACR37707.1| unknown [Zea mays] gi|414590135|tpg|DAA40706.1| TPA: HMG1/2-like
protein [Zea mays]
Length = 127
Score = 59.3 bits (142), Expect = 6e-07
Identities = 27/38 (71%), Positives = 31/38 (81%)
Frame = +3
Query: 6 WKSLSEDEKAPYVAKAARLKSDYTKTMAAYNKAQSGGG 119
WKSLS+ EKAPYV+KA +LK +YTK M AYN QSGGG
Sbjct: 67 WKSLSDAEKAPYVSKAEKLKVEYTKKMDAYNNKQSGGG 104
>ref|NP_001151148.1| LOC100284781 [Zea mays] gi|195644628|gb|ACG41782.1| HMG1/2-like
protein [Zea mays]
Length = 127
Score = 59.3 bits (142), Expect = 6e-07
Identities = 27/38 (71%), Positives = 31/38 (81%)
Frame = +3
Query: 6 WKSLSEDEKAPYVAKAARLKSDYTKTMAAYNKAQSGGG 119
WKSLS+ EKAPYV+KA +LK +YTK M AYN QSGGG
Sbjct: 67 WKSLSDAEKAPYVSKAEKLKVEYTKKMDAYNNKQSGGG 104
>gb|AFK40425.1| unknown [Lotus japonicus]
Length = 152
Score = 58.9 bits (141), Expect = 8e-07
Identities = 27/38 (71%), Positives = 31/38 (81%)
Frame = +3
Query: 3 KWKSLSEDEKAPYVAKAARLKSDYTKTMAAYNKAQSGG 116
KWKS+SE EKAPYVAKA + K+DY KTM AYNK Q+ G
Sbjct: 82 KWKSMSEAEKAPYVAKAEKRKADYEKTMKAYNKKQAEG 119
>ref|XP_004966522.1| PREDICTED: DNA-binding protein MNB1B-like [Setaria italica]
Length = 158
Score = 58.5 bits (140), Expect = 1e-06
Identities = 25/44 (56%), Positives = 35/44 (79%)
Frame = +3
Query: 3 KWKSLSEDEKAPYVAKAARLKSDYTKTMAAYNKAQSGGGSRPAP 134
+WKSL++ +KAPYVAKA +LKS+Y K +AAYNK +S ++ AP
Sbjct: 79 RWKSLTDADKAPYVAKANKLKSEYNKAIAAYNKGESTAAAKKAP 122
>ref|XP_006656519.1| PREDICTED: DNA-binding protein MNB1B-like [Oryza brachyantha]
Length = 157
Score = 57.8 bits (138), Expect = 2e-06
Identities = 26/43 (60%), Positives = 33/43 (76%)
Frame = +3
Query: 3 KWKSLSEDEKAPYVAKAARLKSDYTKTMAAYNKAQSGGGSRPA 131
+WKSLSE +KAPYVAKA +LK++Y K +AAYNK +S PA
Sbjct: 80 RWKSLSEADKAPYVAKANKLKAEYNKAIAAYNKGESTAKKAPA 122
>gb|EMJ03926.1| hypothetical protein PRUPE_ppa012972mg [Prunus persica]
Length = 147
Score = 57.8 bits (138), Expect = 2e-06
Identities = 26/40 (65%), Positives = 33/40 (82%)
Frame = +3
Query: 3 KWKSLSEDEKAPYVAKAARLKSDYTKTMAAYNKAQSGGGS 122
KWKSLS+ EKAPYVAKA + K++Y KTM AYNK+ + GG+
Sbjct: 76 KWKSLSDAEKAPYVAKAEKRKTEYNKTMQAYNKSIAEGGN 115
>ref|XP_004957577.1| PREDICTED: HMG1/2-like protein-like [Setaria italica]
Length = 126
Score = 57.0 bits (136), Expect = 3e-06
Identities = 26/38 (68%), Positives = 30/38 (78%)
Frame = +3
Query: 3 KWKSLSEDEKAPYVAKAARLKSDYTKTMAAYNKAQSGG 116
KWKSLSE EKAP+V KA +LK++YTK M AYN SGG
Sbjct: 66 KWKSLSEAEKAPFVTKAEKLKAEYTKKMDAYNNKPSGG 103
>ref|XP_002270185.1| PREDICTED: high mobility group B protein 1 isoform 2 [Vitis
vinifera]
Length = 156
Score = 57.0 bits (136), Expect = 3e-06
Identities = 27/35 (77%), Positives = 29/35 (82%)
Frame = +3
Query: 3 KWKSLSEDEKAPYVAKAARLKSDYTKTMAAYNKAQ 107
KWKSLSE +KAPY AKAA+ KSDY K MAAYNK Q
Sbjct: 94 KWKSLSEADKAPYEAKAAKRKSDYEKLMAAYNKKQ 128
>ref|XP_002269398.1| PREDICTED: high mobility group B protein 1 isoform 1 [Vitis
vinifera] gi|147854340|emb|CAN83423.1| hypothetical
protein VITISV_023376 [Vitis vinifera]
Length = 166
Score = 57.0 bits (136), Expect = 3e-06
Identities = 27/35 (77%), Positives = 29/35 (82%)
Frame = +3
Query: 3 KWKSLSEDEKAPYVAKAARLKSDYTKTMAAYNKAQ 107
KWKSLSE +KAPY AKAA+ KSDY K MAAYNK Q
Sbjct: 94 KWKSLSEADKAPYEAKAAKRKSDYEKLMAAYNKKQ 128
>ref|NP_001058640.1| Os06g0728000 [Oryza sativa Japonica Group]
gi|3885888|gb|AAC78104.1| high mobility group protein
[Oryza sativa Japonica Group] gi|23345287|gb|AAN28722.1|
HMG1 protein [Oryza sativa Indica Group]
gi|30267833|gb|AAP21609.1| HMGB1 [Oryza sativa Indica
Group] gi|54291150|dbj|BAD61823.1| HMGB1 [Oryza sativa
Japonica Group] gi|113596680|dbj|BAF20554.1|
Os06g0728000 [Oryza sativa Japonica Group]
gi|213959190|gb|ACJ54929.1| HMG protein [Oryza sativa
Japonica Group] gi|215692803|dbj|BAG88247.1| unnamed
protein product [Oryza sativa Japonica Group]
gi|222636260|gb|EEE66392.1| hypothetical protein
OsJ_22728 [Oryza sativa Japonica Group]
Length = 157
Score = 56.6 bits (135), Expect = 4e-06
Identities = 25/43 (58%), Positives = 33/43 (76%)
Frame = +3
Query: 3 KWKSLSEDEKAPYVAKAARLKSDYTKTMAAYNKAQSGGGSRPA 131
+WKSL+E +KAPYVAKA +LK++Y K +AAYNK +S PA
Sbjct: 80 RWKSLTEADKAPYVAKANKLKAEYNKAIAAYNKGESTAKKAPA 122
>gb|EOY07227.1| High mobility group B1 isoform 5 [Theobroma cacao]
gi|508715332|gb|EOY07229.1| High mobility group B1
isoform 5 [Theobroma cacao]
Length = 167
Score = 56.6 bits (135), Expect = 4e-06
Identities = 26/35 (74%), Positives = 29/35 (82%)
Frame = +3
Query: 3 KWKSLSEDEKAPYVAKAARLKSDYTKTMAAYNKAQ 107
KWKSLSEDEKAPY AKAA+ K+DY K M AYN+ Q
Sbjct: 91 KWKSLSEDEKAPYEAKAAKRKADYEKQMNAYNRKQ 125
>gb|EOY07225.1| High mobility group B1 isoform 3 [Theobroma cacao]
gi|508715331|gb|EOY07228.1| High mobility group B1
isoform 3 [Theobroma cacao] gi|508715333|gb|EOY07230.1|
High mobility group B1 isoform 3 [Theobroma cacao]
Length = 177
Score = 56.6 bits (135), Expect = 4e-06
Identities = 26/35 (74%), Positives = 29/35 (82%)
Frame = +3
Query: 3 KWKSLSEDEKAPYVAKAARLKSDYTKTMAAYNKAQ 107
KWKSLSEDEKAPY AKAA+ K+DY K M AYN+ Q
Sbjct: 91 KWKSLSEDEKAPYEAKAAKRKADYEKQMNAYNRKQ 125
>gb|EOY07224.1| High mobility group B1 isoform 2, partial [Theobroma cacao]
Length = 162
Score = 56.6 bits (135), Expect = 4e-06
Identities = 26/35 (74%), Positives = 29/35 (82%)
Frame = +3
Query: 3 KWKSLSEDEKAPYVAKAARLKSDYTKTMAAYNKAQ 107
KWKSLSEDEKAPY AKAA+ K+DY K M AYN+ Q
Sbjct: 91 KWKSLSEDEKAPYEAKAAKRKADYEKQMNAYNRKQ 125
>gb|EOY07223.1| High mobility group B1, putative isoform 1 [Theobroma cacao]
gi|508715329|gb|EOY07226.1| High mobility group B1,
putative isoform 1 [Theobroma cacao]
Length = 172
Score = 56.6 bits (135), Expect = 4e-06
Identities = 26/35 (74%), Positives = 29/35 (82%)
Frame = +3
Query: 3 KWKSLSEDEKAPYVAKAARLKSDYTKTMAAYNKAQ 107
KWKSLSEDEKAPY AKAA+ K+DY K M AYN+ Q
Sbjct: 91 KWKSLSEDEKAPYEAKAAKRKADYEKQMNAYNRKQ 125
>gb|AFK36830.1| unknown [Medicago truncatula]
Length = 155
Score = 56.6 bits (135), Expect = 4e-06
Identities = 26/38 (68%), Positives = 30/38 (78%)
Frame = +3
Query: 3 KWKSLSEDEKAPYVAKAARLKSDYTKTMAAYNKAQSGG 116
KWKSLSE EKAPY AKA + K++Y KTM AYNK Q+ G
Sbjct: 83 KWKSLSEAEKAPYAAKAEKRKAEYEKTMKAYNKKQAEG 120