BLASTX nr result
ID: Zingiber24_contig00001972
seq
BLASTX 2.2.25 [Feb-01-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= Zingiber24_contig00001972
(565 letters)
Database: ./nr
37,332,560 sequences; 13,225,080,153 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
ref|XP_006428771.1| hypothetical protein CICLE_v10012331mg [Citr... 157 1e-36
ref|XP_006428770.1| hypothetical protein CICLE_v10012331mg [Citr... 157 1e-36
ref|XP_006428769.1| hypothetical protein CICLE_v10012331mg [Citr... 157 1e-36
ref|XP_006428768.1| hypothetical protein CICLE_v10012331mg [Citr... 157 1e-36
ref|XP_006428767.1| hypothetical protein CICLE_v10012331mg [Citr... 157 1e-36
ref|XP_002281642.1| PREDICTED: 31 kDa ribonucleoprotein, chlorop... 157 2e-36
gb|EXC16209.1| 29 kDa ribonucleoprotein B [Morus notabilis] 153 3e-35
ref|XP_002519525.1| ribonucleoprotein, chloroplast, putative [Ri... 149 4e-34
ref|XP_002323470.1| 29 kDa ribonucleoprotein [Populus trichocarp... 147 2e-33
gb|ESW16366.1| hypothetical protein PHAVU_007G150700g [Phaseolus... 146 3e-33
ref|XP_003535181.1| PREDICTED: 29 kDa ribonucleoprotein A, chlor... 145 5e-33
ref|XP_002326357.1| predicted protein [Populus trichocarpa] gi|5... 143 3e-32
gb|EMJ06843.1| hypothetical protein PRUPE_ppa009295mg [Prunus pe... 143 3e-32
ref|XP_004137828.1| PREDICTED: 29 kDa ribonucleoprotein, chlorop... 141 1e-31
ref|XP_006650133.1| PREDICTED: ribonucleoprotein At2g37220, chlo... 140 2e-31
ref|XP_006291486.1| hypothetical protein CARUB_v10017634mg [Caps... 140 2e-31
ref|NP_190914.1| chloroplast RNA-binding protein 29 [Arabidopsis... 140 3e-31
dbj|BAA06519.1| RNA-binding protein cp29 [Arabidopsis thaliana] 140 3e-31
dbj|BAA06518.1| RNA-binding protein cp29 [Arabidopsis thaliana] 140 3e-31
ref|XP_002877921.1| hypothetical protein ARALYDRAFT_348440 [Arab... 139 5e-31
>ref|XP_006428771.1| hypothetical protein CICLE_v10012331mg [Citrus clementina]
gi|568855826|ref|XP_006481497.1| PREDICTED:
ribonucleoprotein At2g37220, chloroplastic-like [Citrus
sinensis] gi|557530828|gb|ESR42011.1| hypothetical
protein CICLE_v10012331mg [Citrus clementina]
Length = 282
Score = 157 bits (398), Expect = 1e-36
Identities = 87/165 (52%), Positives = 109/165 (66%)
Frame = +2
Query: 71 AAATAFLPSLSCHVHTIFSTKPQTLAXXXXXXXXXXXXXXARIKIASFPSYTLLRLLRKE 250
+A++ LPSLS +++KP + + I + S+ L
Sbjct: 5 SASSLVLPSLSPKTLAFYNSKPTSFSLLSSSSSHKLLAKPISISSSFIHSFQPL------ 58
Query: 251 PTLGSGIIPKVAVSSDLDKEEDYEFSDGQAGFSPDLKLFVGNLPFSVDSSQLAGLFQQAG 430
P+ S + VAVSS+ D+EED + + FSPDLKLFVGNLPFSVDS+QLAGLF+ AG
Sbjct: 59 PSSPSRFVRNVAVSSEFDQEEDLLSDEDGSNFSPDLKLFVGNLPFSVDSAQLAGLFETAG 118
Query: 431 NVEMVEVIYDKITGKSRGFGFVTMSTIEEVEIAAQQFNGYTLEGR 565
NVEMVEVIYDK+TG+SRGFGFVTMS++EEVE AAQQFNGY LEGR
Sbjct: 119 NVEMVEVIYDKVTGRSRGFGFVTMSSVEEVEAAAQQFNGYELEGR 163
Score = 68.2 bits (165), Expect = 1e-09
Identities = 33/69 (47%), Positives = 46/69 (66%)
Frame = +2
Query: 359 KLFVGNLPFSVDSSQLAGLFQQAGNVEMVEVIYDKITGKSRGFGFVTMSTIEEVEIAAQQ 538
+++VGNL + VD L LF++ G V +V+YD+ +G+SRGFGFVT S+ EEV+ A
Sbjct: 198 RVYVGNLSWGVDDLALETLFREQGKVLEAKVVYDRESGRSRGFGFVTYSSAEEVDNAIDS 257
Query: 539 FNGYTLEGR 565
NG L GR
Sbjct: 258 LNGVDLAGR 266
>ref|XP_006428770.1| hypothetical protein CICLE_v10012331mg [Citrus clementina]
gi|557530827|gb|ESR42010.1| hypothetical protein
CICLE_v10012331mg [Citrus clementina]
Length = 266
Score = 157 bits (398), Expect = 1e-36
Identities = 87/165 (52%), Positives = 109/165 (66%)
Frame = +2
Query: 71 AAATAFLPSLSCHVHTIFSTKPQTLAXXXXXXXXXXXXXXARIKIASFPSYTLLRLLRKE 250
+A++ LPSLS +++KP + + I + S+ L
Sbjct: 5 SASSLVLPSLSPKTLAFYNSKPTSFSLLSSSSSHKLLAKPISISSSFIHSFQPL------ 58
Query: 251 PTLGSGIIPKVAVSSDLDKEEDYEFSDGQAGFSPDLKLFVGNLPFSVDSSQLAGLFQQAG 430
P+ S + VAVSS+ D+EED + + FSPDLKLFVGNLPFSVDS+QLAGLF+ AG
Sbjct: 59 PSSPSRFVRNVAVSSEFDQEEDLLSDEDGSNFSPDLKLFVGNLPFSVDSAQLAGLFETAG 118
Query: 431 NVEMVEVIYDKITGKSRGFGFVTMSTIEEVEIAAQQFNGYTLEGR 565
NVEMVEVIYDK+TG+SRGFGFVTMS++EEVE AAQQFNGY LEGR
Sbjct: 119 NVEMVEVIYDKVTGRSRGFGFVTMSSVEEVEAAAQQFNGYELEGR 163
Score = 65.5 bits (158), Expect = 9e-09
Identities = 32/69 (46%), Positives = 45/69 (65%)
Frame = +2
Query: 359 KLFVGNLPFSVDSSQLAGLFQQAGNVEMVEVIYDKITGKSRGFGFVTMSTIEEVEIAAQQ 538
+++VGNL + VD L LF++ G V +V+YD+ +G+SRGFGFVT S+ EEV+ A
Sbjct: 198 RVYVGNLSWGVDDLALETLFREQGKVLEAKVVYDRESGRSRGFGFVTYSSAEEVDNAIDS 257
Query: 539 FNGYTLEGR 565
NG GR
Sbjct: 258 LNGVVRFGR 266
>ref|XP_006428769.1| hypothetical protein CICLE_v10012331mg [Citrus clementina]
gi|557530826|gb|ESR42009.1| hypothetical protein
CICLE_v10012331mg [Citrus clementina]
Length = 263
Score = 157 bits (398), Expect = 1e-36
Identities = 87/165 (52%), Positives = 109/165 (66%)
Frame = +2
Query: 71 AAATAFLPSLSCHVHTIFSTKPQTLAXXXXXXXXXXXXXXARIKIASFPSYTLLRLLRKE 250
+A++ LPSLS +++KP + + I + S+ L
Sbjct: 5 SASSLVLPSLSPKTLAFYNSKPTSFSLLSSSSSHKLLAKPISISSSFIHSFQPL------ 58
Query: 251 PTLGSGIIPKVAVSSDLDKEEDYEFSDGQAGFSPDLKLFVGNLPFSVDSSQLAGLFQQAG 430
P+ S + VAVSS+ D+EED + + FSPDLKLFVGNLPFSVDS+QLAGLF+ AG
Sbjct: 59 PSSPSRFVRNVAVSSEFDQEEDLLSDEDGSNFSPDLKLFVGNLPFSVDSAQLAGLFETAG 118
Query: 431 NVEMVEVIYDKITGKSRGFGFVTMSTIEEVEIAAQQFNGYTLEGR 565
NVEMVEVIYDK+TG+SRGFGFVTMS++EEVE AAQQFNGY LEGR
Sbjct: 119 NVEMVEVIYDKVTGRSRGFGFVTMSSVEEVEAAAQQFNGYELEGR 163
Score = 64.7 bits (156), Expect = 2e-08
Identities = 30/64 (46%), Positives = 44/64 (68%)
Frame = +2
Query: 359 KLFVGNLPFSVDSSQLAGLFQQAGNVEMVEVIYDKITGKSRGFGFVTMSTIEEVEIAAQQ 538
+++VGNL + VD L LF++ G V +V+YD+ +G+SRGFGFVT S+ EEV+ A
Sbjct: 198 RVYVGNLSWGVDDLALETLFREQGKVLEAKVVYDRESGRSRGFGFVTYSSAEEVDNAIDS 257
Query: 539 FNGY 550
NG+
Sbjct: 258 LNGF 261
>ref|XP_006428768.1| hypothetical protein CICLE_v10012331mg [Citrus clementina]
gi|557530825|gb|ESR42008.1| hypothetical protein
CICLE_v10012331mg [Citrus clementina]
Length = 271
Score = 157 bits (398), Expect = 1e-36
Identities = 87/165 (52%), Positives = 109/165 (66%)
Frame = +2
Query: 71 AAATAFLPSLSCHVHTIFSTKPQTLAXXXXXXXXXXXXXXARIKIASFPSYTLLRLLRKE 250
+A++ LPSLS +++KP + + I + S+ L
Sbjct: 5 SASSLVLPSLSPKTLAFYNSKPTSFSLLSSSSSHKLLAKPISISSSFIHSFQPL------ 58
Query: 251 PTLGSGIIPKVAVSSDLDKEEDYEFSDGQAGFSPDLKLFVGNLPFSVDSSQLAGLFQQAG 430
P+ S + VAVSS+ D+EED + + FSPDLKLFVGNLPFSVDS+QLAGLF+ AG
Sbjct: 59 PSSPSRFVRNVAVSSEFDQEEDLLSDEDGSNFSPDLKLFVGNLPFSVDSAQLAGLFETAG 118
Query: 431 NVEMVEVIYDKITGKSRGFGFVTMSTIEEVEIAAQQFNGYTLEGR 565
NVEMVEVIYDK+TG+SRGFGFVTMS++EEVE AAQQFNGY LEGR
Sbjct: 119 NVEMVEVIYDKVTGRSRGFGFVTMSSVEEVEAAAQQFNGYELEGR 163
Score = 56.6 bits (135), Expect = 4e-06
Identities = 26/53 (49%), Positives = 38/53 (71%)
Frame = +2
Query: 359 KLFVGNLPFSVDSSQLAGLFQQAGNVEMVEVIYDKITGKSRGFGFVTMSTIEE 517
+++VGNL + VD L LF++ G V +V+YD+ +G+SRGFGFVT S+ EE
Sbjct: 198 RVYVGNLSWGVDDLALETLFREQGKVLEAKVVYDRESGRSRGFGFVTYSSAEE 250
>ref|XP_006428767.1| hypothetical protein CICLE_v10012331mg [Citrus clementina]
gi|557530824|gb|ESR42007.1| hypothetical protein
CICLE_v10012331mg [Citrus clementina]
Length = 297
Score = 157 bits (398), Expect = 1e-36
Identities = 87/165 (52%), Positives = 109/165 (66%)
Frame = +2
Query: 71 AAATAFLPSLSCHVHTIFSTKPQTLAXXXXXXXXXXXXXXARIKIASFPSYTLLRLLRKE 250
+A++ LPSLS +++KP + + I + S+ L
Sbjct: 5 SASSLVLPSLSPKTLAFYNSKPTSFSLLSSSSSHKLLAKPISISSSFIHSFQPL------ 58
Query: 251 PTLGSGIIPKVAVSSDLDKEEDYEFSDGQAGFSPDLKLFVGNLPFSVDSSQLAGLFQQAG 430
P+ S + VAVSS+ D+EED + + FSPDLKLFVGNLPFSVDS+QLAGLF+ AG
Sbjct: 59 PSSPSRFVRNVAVSSEFDQEEDLLSDEDGSNFSPDLKLFVGNLPFSVDSAQLAGLFETAG 118
Query: 431 NVEMVEVIYDKITGKSRGFGFVTMSTIEEVEIAAQQFNGYTLEGR 565
NVEMVEVIYDK+TG+SRGFGFVTMS++EEVE AAQQFNGY LEGR
Sbjct: 119 NVEMVEVIYDKVTGRSRGFGFVTMSSVEEVEAAAQQFNGYELEGR 163
Score = 63.5 bits (153), Expect = 3e-08
Identities = 30/63 (47%), Positives = 43/63 (68%)
Frame = +2
Query: 359 KLFVGNLPFSVDSSQLAGLFQQAGNVEMVEVIYDKITGKSRGFGFVTMSTIEEVEIAAQQ 538
+++VGNL + VD L LF++ G V +V+YD+ +G+SRGFGFVT S+ EEV+ A
Sbjct: 198 RVYVGNLSWGVDDLALETLFREQGKVLEAKVVYDRESGRSRGFGFVTYSSAEEVDNAIDS 257
Query: 539 FNG 547
NG
Sbjct: 258 LNG 260
>ref|XP_002281642.1| PREDICTED: 31 kDa ribonucleoprotein, chloroplastic isoform 1 [Vitis
vinifera]
Length = 288
Score = 157 bits (397), Expect = 2e-36
Identities = 78/104 (75%), Positives = 89/104 (85%)
Frame = +2
Query: 254 TLGSGIIPKVAVSSDLDKEEDYEFSDGQAGFSPDLKLFVGNLPFSVDSSQLAGLFQQAGN 433
TL S + VAVSSD +++ED +G+ FSPDLKLFVGNLPF+VDS+ LAGLF+QAGN
Sbjct: 56 TLSSRFVRNVAVSSDYEQDEDVLSDEGEPSFSPDLKLFVGNLPFNVDSAGLAGLFEQAGN 115
Query: 434 VEMVEVIYDKITGKSRGFGFVTMSTIEEVEIAAQQFNGYTLEGR 565
VEMVEVIYDKITG+SRGFGFVTMST+EEVE AAQQFNGY LEGR
Sbjct: 116 VEMVEVIYDKITGRSRGFGFVTMSTVEEVEAAAQQFNGYELEGR 159
Score = 69.3 bits (168), Expect = 6e-10
Identities = 35/78 (44%), Positives = 47/78 (60%)
Frame = +2
Query: 332 GQAGFSPDLKLFVGNLPFSVDSSQLAGLFQQAGNVEMVEVIYDKITGKSRGFGFVTMSTI 511
G A + +++VGNL + VD L LF + G V VIYD+ TG+SRGFGFVT ++
Sbjct: 196 GGANLNSTNRIYVGNLSWGVDDLALETLFSEQGKVTEARVIYDRETGRSRGFGFVTYNSA 255
Query: 512 EEVEIAAQQFNGYTLEGR 565
EEV A + +G L GR
Sbjct: 256 EEVNRAIESLDGVDLNGR 273
>gb|EXC16209.1| 29 kDa ribonucleoprotein B [Morus notabilis]
Length = 296
Score = 153 bits (386), Expect = 3e-35
Identities = 78/100 (78%), Positives = 89/100 (89%), Gaps = 2/100 (2%)
Frame = +2
Query: 272 IPKVAVSSDLDKEEDYEFSDG--QAGFSPDLKLFVGNLPFSVDSSQLAGLFQQAGNVEMV 445
+PKVAVSS+ D++ED SDG + GFSPDLKLFVGNLPFSVDS+QLAGLF++ GNVEMV
Sbjct: 73 VPKVAVSSEFDQDEDV-LSDGGEEPGFSPDLKLFVGNLPFSVDSAQLAGLFERTGNVEMV 131
Query: 446 EVIYDKITGKSRGFGFVTMSTIEEVEIAAQQFNGYTLEGR 565
EVIYDK TG+SRGFGFVTMS+I+EVE AAQQFNGY LEGR
Sbjct: 132 EVIYDKTTGRSRGFGFVTMSSIDEVEAAAQQFNGYELEGR 171
Score = 73.9 bits (180), Expect = 3e-11
Identities = 35/78 (44%), Positives = 50/78 (64%)
Frame = +2
Query: 332 GQAGFSPDLKLFVGNLPFSVDSSQLAGLFQQAGNVEMVEVIYDKITGKSRGFGFVTMSTI 511
G AG+ +++VGNL + VD++ L LF + G V +V+YD+ +G+SRGFGFVT +T
Sbjct: 204 GGAGYETGNRVYVGNLSWGVDNAALESLFSEQGKVLEAKVVYDRDSGRSRGFGFVTYNTA 263
Query: 512 EEVEIAAQQFNGYTLEGR 565
+EV A NG L GR
Sbjct: 264 DEVNSAINSLNGVDLNGR 281
>ref|XP_002519525.1| ribonucleoprotein, chloroplast, putative [Ricinus communis]
gi|223541388|gb|EEF42939.1| ribonucleoprotein,
chloroplast, putative [Ricinus communis]
Length = 280
Score = 149 bits (377), Expect = 4e-34
Identities = 74/110 (67%), Positives = 91/110 (82%), Gaps = 1/110 (0%)
Frame = +2
Query: 239 LRKEP-TLGSGIIPKVAVSSDLDKEEDYEFSDGQAGFSPDLKLFVGNLPFSVDSSQLAGL 415
L+++P + S +P VA+SS+ +EED ++ FS DLKLFVGNLPF+VDS+QLAGL
Sbjct: 52 LQQQPYSSSSRFVPSVAISSEFGQEEDVSSDGDESSFSQDLKLFVGNLPFNVDSAQLAGL 111
Query: 416 FQQAGNVEMVEVIYDKITGKSRGFGFVTMSTIEEVEIAAQQFNGYTLEGR 565
F+ AGNVEMVEVIYDK+TG+SRGFGFVTMS+I+EVE AAQQFNGY LEGR
Sbjct: 112 FESAGNVEMVEVIYDKVTGRSRGFGFVTMSSIDEVEAAAQQFNGYELEGR 161
Score = 72.0 bits (175), Expect = 1e-10
Identities = 35/69 (50%), Positives = 47/69 (68%)
Frame = +2
Query: 359 KLFVGNLPFSVDSSQLAGLFQQAGNVEMVEVIYDKITGKSRGFGFVTMSTIEEVEIAAQQ 538
+L+VGNL +SVD+ L F + G V +V+YD+ +G+SRGFGFVT S+ EEVE A
Sbjct: 197 RLYVGNLSWSVDNLALESFFSEQGKVVDAKVVYDRESGRSRGFGFVTYSSAEEVENAIDS 256
Query: 539 FNGYTLEGR 565
NG L+GR
Sbjct: 257 LNGAELDGR 265
>ref|XP_002323470.1| 29 kDa ribonucleoprotein [Populus trichocarpa]
gi|222868100|gb|EEF05231.1| 29 kDa ribonucleoprotein
[Populus trichocarpa]
Length = 273
Score = 147 bits (370), Expect = 2e-33
Identities = 85/167 (50%), Positives = 112/167 (67%), Gaps = 2/167 (1%)
Frame = +2
Query: 71 AAATAFLPSLSCHVHTI--FSTKPQTLAXXXXXXXXXXXXXXARIKIASFPSYTLLRLLR 244
+A++ LPSL+ H +TI F +KP +L + +K P LL
Sbjct: 5 SASSLVLPSLN-HPNTIKSFYSKPNSL-------FFLSPSSTSSLK----PVSLLLSFQH 52
Query: 245 KEPTLGSGIIPKVAVSSDLDKEEDYEFSDGQAGFSPDLKLFVGNLPFSVDSSQLAGLFQQ 424
++ L S + VA+SS+ +EED+ + FS DLKLFVGNLPF+VDS++LAGLF+
Sbjct: 53 QQQPLSSRFLKNVAISSEFGQEEDFLSDGDEQSFSQDLKLFVGNLPFNVDSARLAGLFET 112
Query: 425 AGNVEMVEVIYDKITGKSRGFGFVTMSTIEEVEIAAQQFNGYTLEGR 565
AGNVEMVEVIYDK+TG+SRGFGFVTM+TIEEVE A++QFNGY L+GR
Sbjct: 113 AGNVEMVEVIYDKVTGRSRGFGFVTMTTIEEVEAASKQFNGYELDGR 159
Score = 72.8 bits (177), Expect = 6e-11
Identities = 38/89 (42%), Positives = 57/89 (64%), Gaps = 3/89 (3%)
Frame = +2
Query: 308 EEDYEFSDGQAG---FSPDLKLFVGNLPFSVDSSQLAGLFQQAGNVEMVEVIYDKITGKS 478
+++ FS G G F +++VGNL ++VD+ L LF++ G V +V+YD+ +G+S
Sbjct: 170 QKESSFSRGPRGGETFDSGNRVYVGNLSWNVDNLALETLFREKGRVMDAKVVYDRDSGRS 229
Query: 479 RGFGFVTMSTIEEVEIAAQQFNGYTLEGR 565
RGFGFVT S+ EEV+ A NG L+GR
Sbjct: 230 RGFGFVTYSSAEEVDNAIDSLNGAELDGR 258
>gb|ESW16366.1| hypothetical protein PHAVU_007G150700g [Phaseolus vulgaris]
Length = 275
Score = 146 bits (369), Expect = 3e-33
Identities = 76/109 (69%), Positives = 91/109 (83%)
Frame = +2
Query: 239 LRKEPTLGSGIIPKVAVSSDLDKEEDYEFSDGQAGFSPDLKLFVGNLPFSVDSSQLAGLF 418
L+ +L S +P+VAVSS+ D+EE FS GQ+ FSPDLKLFVGNLPFSVDS+QLA +F
Sbjct: 47 LKPTLSLSSRFLPRVAVSSEYDQEEG-TFSSGQS-FSPDLKLFVGNLPFSVDSAQLAEIF 104
Query: 419 QQAGNVEMVEVIYDKITGKSRGFGFVTMSTIEEVEIAAQQFNGYTLEGR 565
+ AGNVE+VEVIYDK TG+SRGFGFVTMS++EEVE A QQFNGY L+GR
Sbjct: 105 ENAGNVEVVEVIYDKTTGRSRGFGFVTMSSVEEVEAAVQQFNGYELDGR 153
Score = 63.5 bits (153), Expect = 3e-08
Identities = 35/82 (42%), Positives = 47/82 (57%)
Frame = +2
Query: 320 EFSDGQAGFSPDLKLFVGNLPFSVDSSQLAGLFQQAGNVEMVEVIYDKITGKSRGFGFVT 499
+FSD + K+ V NL + VD+ L F + G V VIYD+ +G+SRGFGFVT
Sbjct: 183 DFSDSEN------KVHVSNLAWGVDNGTLESFFGEYGKVLEARVIYDRDSGRSRGFGFVT 236
Query: 500 MSTIEEVEIAAQQFNGYTLEGR 565
S+ +EV A Q +G L GR
Sbjct: 237 YSSADEVSSAIQSLDGVDLNGR 258
>ref|XP_003535181.1| PREDICTED: 29 kDa ribonucleoprotein A, chloroplastic [Glycine max]
Length = 275
Score = 145 bits (367), Expect = 5e-33
Identities = 78/109 (71%), Positives = 88/109 (80%), Gaps = 2/109 (1%)
Frame = +2
Query: 245 KEPTLGSG-IIPKVAVSSDLDKEEDYEFSDGQA-GFSPDLKLFVGNLPFSVDSSQLAGLF 418
K TL S +P V VSSDL +EED FSDG FSPDLKLFVGNLPF+VDS+QLA LF
Sbjct: 48 KPTTLSSSRFVPHVVVSSDLGQEED-TFSDGDGPSFSPDLKLFVGNLPFNVDSAQLAELF 106
Query: 419 QQAGNVEMVEVIYDKITGKSRGFGFVTMSTIEEVEIAAQQFNGYTLEGR 565
+ AGNVE+VEVIYDK TG+SRGFGFVTMS++EE E AAQQFNGY L+GR
Sbjct: 107 ESAGNVEVVEVIYDKTTGRSRGFGFVTMSSVEEAEAAAQQFNGYELDGR 155
Score = 68.6 bits (166), Expect = 1e-09
Identities = 38/83 (45%), Positives = 50/83 (60%), Gaps = 3/83 (3%)
Frame = +2
Query: 326 SDGQAGFSP---DLKLFVGNLPFSVDSSQLAGLFQQAGNVEMVEVIYDKITGKSRGFGFV 496
S G G P + ++ V NL + VD+ L LF++ GNV VIYD+ +G+SRGFGFV
Sbjct: 179 SFGSRGGGPSDSENRVHVSNLAWGVDNVALKSLFREQGNVLEARVIYDRESGRSRGFGFV 238
Query: 497 TMSTIEEVEIAAQQFNGYTLEGR 565
T S+ +EV A Q NG L GR
Sbjct: 239 TFSSPDEVNSAIQSLNGVDLNGR 261
>ref|XP_002326357.1| predicted protein [Populus trichocarpa]
gi|566176031|ref|XP_006381446.1| 29 kDa
ribonucleoprotein [Populus trichocarpa]
gi|550336149|gb|ERP59243.1| 29 kDa ribonucleoprotein
[Populus trichocarpa]
Length = 286
Score = 143 bits (361), Expect = 3e-32
Identities = 89/168 (52%), Positives = 117/168 (69%), Gaps = 3/168 (1%)
Frame = +2
Query: 71 AAATAFLPSLSCHVHTI--FSTKPQTLAXXXXXXXXXXXXXXARIKIASFPSYTLLRLLR 244
+A++ LPSL+ H +TI F +KP +L+ + IK AS + + +
Sbjct: 5 SASSLVLPSLN-HPNTIKSFYSKPTSLSFLSLSST-------SSIKPASL--FLSFQQKQ 54
Query: 245 KEPTLGSGIIPKVAVSSDLDKEEDYEFSDG-QAGFSPDLKLFVGNLPFSVDSSQLAGLFQ 421
++P L S + VA+SS+ +EED F DG + FSPDL+LFVGNLPF+V+S+QLA LF+
Sbjct: 55 QQP-LSSRFLKSVAISSEFGQEEDV-FGDGDEPSFSPDLQLFVGNLPFNVNSAQLADLFK 112
Query: 422 QAGNVEMVEVIYDKITGKSRGFGFVTMSTIEEVEIAAQQFNGYTLEGR 565
AGNVEMVEV YDK+TG+SRGFGFVTMSTIEEVE A+QQFNGY L+GR
Sbjct: 113 SAGNVEMVEVKYDKVTGRSRGFGFVTMSTIEEVEAASQQFNGYELDGR 160
Score = 74.7 bits (182), Expect = 1e-11
Identities = 42/108 (38%), Positives = 61/108 (56%), Gaps = 5/108 (4%)
Frame = +2
Query: 257 LGSGIIPKVAVSSDLDKEEDYEFSDGQAG-----FSPDLKLFVGNLPFSVDSSQLAGLFQ 421
+ SG P+ S + + FS G F +++VGNL ++VD S L LF+
Sbjct: 164 VNSGPPPQRETSFSRLPQRENSFSRGPGARGGETFDSSNRVYVGNLSWNVDDSALESLFR 223
Query: 422 QAGNVEMVEVIYDKITGKSRGFGFVTMSTIEEVEIAAQQFNGYTLEGR 565
+ G V +V+YD+ +G+S+GFGFVT S+ EEVE A NG L+GR
Sbjct: 224 EKGKVMDAKVVYDRDSGRSKGFGFVTYSSAEEVEDAVDSLNGAELDGR 271
>gb|EMJ06843.1| hypothetical protein PRUPE_ppa009295mg [Prunus persica]
Length = 298
Score = 143 bits (360), Expect = 3e-32
Identities = 69/101 (68%), Positives = 85/101 (84%)
Frame = +2
Query: 263 SGIIPKVAVSSDLDKEEDYEFSDGQAGFSPDLKLFVGNLPFSVDSSQLAGLFQQAGNVEM 442
S + VAVSS+ +++E+ DG+A F+PDLKLFVGNLPFSVDS+QLAGLF+ AGNVEM
Sbjct: 84 SRFVRNVAVSSEFEQDEEVLSDDGEASFAPDLKLFVGNLPFSVDSAQLAGLFESAGNVEM 143
Query: 443 VEVIYDKITGKSRGFGFVTMSTIEEVEIAAQQFNGYTLEGR 565
VEVIYDK TG+SRGFGFVTMS+++E E AA+Q NGY L+GR
Sbjct: 144 VEVIYDKTTGRSRGFGFVTMSSVQEAEGAARQLNGYELDGR 184
Score = 70.5 bits (171), Expect = 3e-10
Identities = 34/86 (39%), Positives = 51/86 (59%)
Frame = +2
Query: 308 EEDYEFSDGQAGFSPDLKLFVGNLPFSVDSSQLAGLFQQAGNVEMVEVIYDKITGKSRGF 487
E+ + + G G +L+VGNL + VD+ L LF + G V +V+YD+ +G+SRGF
Sbjct: 198 EDSFRGARGGGGSDSSNRLYVGNLAWGVDNLALENLFSEQGKVLEAKVVYDRDSGRSRGF 257
Query: 488 GFVTMSTIEEVEIAAQQFNGYTLEGR 565
GFVT T +E+ A + +G L GR
Sbjct: 258 GFVTYGTADEMNSAMESLDGVDLNGR 283
>ref|XP_004137828.1| PREDICTED: 29 kDa ribonucleoprotein, chloroplastic-like [Cucumis
sativus] gi|449483348|ref|XP_004156563.1| PREDICTED: 29
kDa ribonucleoprotein, chloroplastic-like [Cucumis
sativus]
Length = 278
Score = 141 bits (356), Expect = 1e-31
Identities = 88/171 (51%), Positives = 109/171 (63%), Gaps = 4/171 (2%)
Frame = +2
Query: 65 SMAAATAFLPSLSCHVHTIFSTKPQTLAXXXXXXXXXXXXXXARIKIASFP---SYTLLR 235
S +AA+ LPSL+ + T+ S+ P+ + I++ S P S LL
Sbjct: 2 SASAASLTLPSLT--LKTLSSSNPK--------FKLFSLNPSSSIRLLSNPISISSFLLP 51
Query: 236 LLRKEPTLGSGIIPKVAVSSDLDKEEDYEFSDGQ-AGFSPDLKLFVGNLPFSVDSSQLAG 412
R P S + VAVSSD +EE DG + ++PDLKLFVGNLPF+VDS+QLAG
Sbjct: 52 SHRVSPPFSSRFVRNVAVSSDYGQEEGTLEVDGDDSSYAPDLKLFVGNLPFTVDSAQLAG 111
Query: 413 LFQQAGNVEMVEVIYDKITGKSRGFGFVTMSTIEEVEIAAQQFNGYTLEGR 565
LF+ AG VE VEVIYDK TG+SRGFGFVTMST+ EVE AAQQFNGY L+GR
Sbjct: 112 LFESAGQVERVEVIYDKTTGRSRGFGFVTMSTVGEVEAAAQQFNGYELDGR 162
Score = 68.9 bits (167), Expect = 8e-10
Identities = 38/89 (42%), Positives = 53/89 (59%), Gaps = 2/89 (2%)
Frame = +2
Query: 305 KEEDYEF--SDGQAGFSPDLKLFVGNLPFSVDSSQLAGLFQQAGNVEMVEVIYDKITGKS 478
K +D F S + F ++ V NL + VD L LF++ GNV +V+YD+ +GKS
Sbjct: 174 KRDDSSFRGSRNASRFDNRNRVHVSNLAWGVDDLTLENLFREKGNVLEAKVVYDRDSGKS 233
Query: 479 RGFGFVTMSTIEEVEIAAQQFNGYTLEGR 565
RGFGFVT ++ EEV A Q +G L+GR
Sbjct: 234 RGFGFVTYNSAEEVNEAIQSLDGVDLDGR 262
>ref|XP_006650133.1| PREDICTED: ribonucleoprotein At2g37220, chloroplastic-like [Oryza
brachyantha]
Length = 262
Score = 140 bits (353), Expect = 2e-31
Identities = 67/95 (70%), Positives = 84/95 (88%)
Frame = +2
Query: 281 VAVSSDLDKEEDYEFSDGQAGFSPDLKLFVGNLPFSVDSSQLAGLFQQAGNVEMVEVIYD 460
VAVS D++ E++ E S+ + FS DL++FVGNLPFSVDS+QLAGLF+QAG+VEMVEVIYD
Sbjct: 58 VAVSEDVETEQEEEGSEAEEEFSEDLRVFVGNLPFSVDSAQLAGLFEQAGSVEMVEVIYD 117
Query: 461 KITGKSRGFGFVTMSTIEEVEIAAQQFNGYTLEGR 565
K+TG+SRGFGFVTMST+EEVE A +QFNG+ L+GR
Sbjct: 118 KLTGRSRGFGFVTMSTVEEVEAAVEQFNGHILDGR 152
Score = 68.9 bits (167), Expect = 8e-10
Identities = 33/69 (47%), Positives = 46/69 (66%)
Frame = +2
Query: 359 KLFVGNLPFSVDSSQLAGLFQQAGNVEMVEVIYDKITGKSRGFGFVTMSTIEEVEIAAQQ 538
+++VGNL + VD++ LA LF G V +IYD+ +G+SRGFGFVT + EEVE A
Sbjct: 178 RVYVGNLSWGVDNAALANLFSGEGEVLEARIIYDRESGRSRGFGFVTYGSAEEVENAVSN 237
Query: 539 FNGYTLEGR 565
+G L+GR
Sbjct: 238 LDGTDLDGR 246
>ref|XP_006291486.1| hypothetical protein CARUB_v10017634mg [Capsella rubella]
gi|482560193|gb|EOA24384.1| hypothetical protein
CARUB_v10017634mg [Capsella rubella]
Length = 327
Score = 140 bits (353), Expect = 2e-31
Identities = 74/108 (68%), Positives = 83/108 (76%), Gaps = 7/108 (6%)
Frame = +2
Query: 263 SGIIPKVAVSSDLDKEEDYEFSDG-------QAGFSPDLKLFVGNLPFSVDSSQLAGLFQ 421
S + VAVSSD + EED F+DG + FSPDLKLFVGNL F+VDS+QLA LF+
Sbjct: 55 SRFVRNVAVSSDFEVEEDDMFADGDDSAPVERTSFSPDLKLFVGNLSFNVDSAQLAQLFE 114
Query: 422 QAGNVEMVEVIYDKITGKSRGFGFVTMSTIEEVEIAAQQFNGYTLEGR 565
AGNVEMVEVIYDK+TG+SRGFGFVTMST EVE AAQQFNGY EGR
Sbjct: 115 SAGNVEMVEVIYDKVTGRSRGFGFVTMSTAAEVEAAAQQFNGYEYEGR 162
Score = 69.3 bits (168), Expect = 6e-10
Identities = 34/80 (42%), Positives = 49/80 (61%)
Frame = +2
Query: 326 SDGQAGFSPDLKLFVGNLPFSVDSSQLAGLFQQAGNVEMVEVIYDKITGKSRGFGFVTMS 505
S +G +L+VGNL + VD L +F + G V VIYD+ +G+S+GFGFVT+S
Sbjct: 232 SGSGSGSGSGNRLYVGNLSWGVDDMALENMFNEQGKVVEARVIYDRDSGRSKGFGFVTLS 291
Query: 506 TIEEVEIAAQQFNGYTLEGR 565
+ +EV+ A NG L+GR
Sbjct: 292 SSQEVQKAINSLNGADLDGR 311
>ref|NP_190914.1| chloroplast RNA-binding protein 29 [Arabidopsis thaliana]
gi|186511018|ref|NP_850692.2| chloroplast RNA-binding
protein 29 [Arabidopsis thaliana]
gi|334185948|ref|NP_001190078.1| chloroplast RNA-binding
protein 29 [Arabidopsis thaliana]
gi|30316379|sp|Q43349.2|ROC2_ARATH RecName: Full=29 kDa
ribonucleoprotein, chloroplastic; AltName:
Full=RNA-binding protein cp29; Flags: Precursor
gi|6729497|emb|CAB67653.1| RNA-binding protein cp29
protein [Arabidopsis thaliana]
gi|14532570|gb|AAK64013.1| AT3g53460/F4P12_160
[Arabidopsis thaliana] gi|18655393|gb|AAL76152.1|
AT3g53460/F4P12_160 [Arabidopsis thaliana]
gi|21593426|gb|AAM65393.1| RNA-binding protein cp29
protein [Arabidopsis thaliana]
gi|332645568|gb|AEE79089.1| chloroplast RNA-binding
protein 29 [Arabidopsis thaliana]
gi|332645569|gb|AEE79090.1| chloroplast RNA-binding
protein 29 [Arabidopsis thaliana]
gi|332645570|gb|AEE79091.1| chloroplast RNA-binding
protein 29 [Arabidopsis thaliana]
Length = 342
Score = 140 bits (352), Expect = 3e-31
Identities = 74/108 (68%), Positives = 83/108 (76%), Gaps = 7/108 (6%)
Frame = +2
Query: 263 SGIIPKVAVSSDLDKEEDYEFSDG-------QAGFSPDLKLFVGNLPFSVDSSQLAGLFQ 421
S + VAVSSD + EED F+DG + FSPDLKLFVGNL F+VDS+QLA LF+
Sbjct: 61 SRFVRNVAVSSDFEVEEDDMFADGDDSAPVERNSFSPDLKLFVGNLSFNVDSAQLAQLFE 120
Query: 422 QAGNVEMVEVIYDKITGKSRGFGFVTMSTIEEVEIAAQQFNGYTLEGR 565
AGNVEMVEVIYDK+TG+SRGFGFVTMST EVE AAQQFNGY EGR
Sbjct: 121 SAGNVEMVEVIYDKVTGRSRGFGFVTMSTAAEVEAAAQQFNGYEFEGR 168
Score = 70.1 bits (170), Expect = 4e-10
Identities = 35/80 (43%), Positives = 49/80 (61%)
Frame = +2
Query: 326 SDGQAGFSPDLKLFVGNLPFSVDSSQLAGLFQQAGNVEMVEVIYDKITGKSRGFGFVTMS 505
S +G +L+VGNL + VD L LF + G V VIYD+ +G+S+GFGFVT+S
Sbjct: 247 SGSGSGSGSGNRLYVGNLSWGVDDMALENLFNEQGKVVEARVIYDRDSGRSKGFGFVTLS 306
Query: 506 TIEEVEIAAQQFNGYTLEGR 565
+ +EV+ A NG L+GR
Sbjct: 307 SSQEVQKAINSLNGADLDGR 326
>dbj|BAA06519.1| RNA-binding protein cp29 [Arabidopsis thaliana]
Length = 326
Score = 140 bits (352), Expect = 3e-31
Identities = 74/108 (68%), Positives = 83/108 (76%), Gaps = 7/108 (6%)
Frame = +2
Query: 263 SGIIPKVAVSSDLDKEEDYEFSDG-------QAGFSPDLKLFVGNLPFSVDSSQLAGLFQ 421
S + VAVSSD + EED F+DG + FSPDLKLFVGNL F+VDS+QLA LF+
Sbjct: 53 SRFVRNVAVSSDFEVEEDDMFADGDDSAPVERNSFSPDLKLFVGNLSFNVDSAQLAQLFE 112
Query: 422 QAGNVEMVEVIYDKITGKSRGFGFVTMSTIEEVEIAAQQFNGYTLEGR 565
AGNVEMVEVIYDK+TG+SRGFGFVTMST EVE AAQQFNGY EGR
Sbjct: 113 SAGNVEMVEVIYDKVTGRSRGFGFVTMSTAAEVEAAAQQFNGYEFEGR 160
Score = 70.1 bits (170), Expect = 4e-10
Identities = 35/80 (43%), Positives = 49/80 (61%)
Frame = +2
Query: 326 SDGQAGFSPDLKLFVGNLPFSVDSSQLAGLFQQAGNVEMVEVIYDKITGKSRGFGFVTMS 505
S +G +L+VGNL + VD L LF + G V VIYD+ +G+S+GFGFVT+S
Sbjct: 231 SGSGSGSGSGNRLYVGNLSWGVDDMALENLFNEQGKVVEARVIYDRDSGRSKGFGFVTLS 290
Query: 506 TIEEVEIAAQQFNGYTLEGR 565
+ +EV+ A NG L+GR
Sbjct: 291 SSQEVQKAINSLNGADLDGR 310
>dbj|BAA06518.1| RNA-binding protein cp29 [Arabidopsis thaliana]
Length = 334
Score = 140 bits (352), Expect = 3e-31
Identities = 74/108 (68%), Positives = 83/108 (76%), Gaps = 7/108 (6%)
Frame = +2
Query: 263 SGIIPKVAVSSDLDKEEDYEFSDG-------QAGFSPDLKLFVGNLPFSVDSSQLAGLFQ 421
S + VAVSSD + EED F+DG + FSPDLKLFVGNL F+VDS+QLA LF+
Sbjct: 61 SRFVRNVAVSSDFEVEEDDMFADGDDSAPVERNSFSPDLKLFVGNLSFNVDSAQLAQLFE 120
Query: 422 QAGNVEMVEVIYDKITGKSRGFGFVTMSTIEEVEIAAQQFNGYTLEGR 565
AGNVEMVEVIYDK+TG+SRGFGFVTMST EVE AAQQFNGY EGR
Sbjct: 121 SAGNVEMVEVIYDKVTGRSRGFGFVTMSTAAEVEAAAQQFNGYEFEGR 168
Score = 70.1 bits (170), Expect = 4e-10
Identities = 35/80 (43%), Positives = 49/80 (61%)
Frame = +2
Query: 326 SDGQAGFSPDLKLFVGNLPFSVDSSQLAGLFQQAGNVEMVEVIYDKITGKSRGFGFVTMS 505
S +G +L+VGNL + VD L LF + G V VIYD+ +G+S+GFGFVT+S
Sbjct: 239 SGSGSGSGSGNRLYVGNLSWGVDDMALENLFNEQGKVVEARVIYDRDSGRSKGFGFVTLS 298
Query: 506 TIEEVEIAAQQFNGYTLEGR 565
+ +EV+ A NG L+GR
Sbjct: 299 SSQEVQKAINSLNGADLDGR 318
>ref|XP_002877921.1| hypothetical protein ARALYDRAFT_348440 [Arabidopsis lyrata subsp.
lyrata] gi|297323759|gb|EFH54180.1| hypothetical protein
ARALYDRAFT_348440 [Arabidopsis lyrata subsp. lyrata]
Length = 339
Score = 139 bits (350), Expect = 5e-31
Identities = 73/105 (69%), Positives = 82/105 (78%), Gaps = 7/105 (6%)
Frame = +2
Query: 272 IPKVAVSSDLDKEEDYEFSDG-------QAGFSPDLKLFVGNLPFSVDSSQLAGLFQQAG 430
+ VAVSSD + EED F+DG + FSPDLKLFVGNL F+VDS+QLA LF+ AG
Sbjct: 64 VRNVAVSSDFEVEEDDMFADGDDSAPVERNSFSPDLKLFVGNLSFNVDSAQLAQLFESAG 123
Query: 431 NVEMVEVIYDKITGKSRGFGFVTMSTIEEVEIAAQQFNGYTLEGR 565
NVEMVEVIYDK+TG+SRGFGFVTMST EVE AAQQFNGY EGR
Sbjct: 124 NVEMVEVIYDKVTGRSRGFGFVTMSTAAEVEAAAQQFNGYEFEGR 168
Score = 70.1 bits (170), Expect = 4e-10
Identities = 35/80 (43%), Positives = 49/80 (61%)
Frame = +2
Query: 326 SDGQAGFSPDLKLFVGNLPFSVDSSQLAGLFQQAGNVEMVEVIYDKITGKSRGFGFVTMS 505
S +G +L+VGNL + VD L LF + G V VIYD+ +G+S+GFGFVT+S
Sbjct: 244 SGSGSGSGSGNRLYVGNLSWGVDDMALENLFNEQGKVVEARVIYDRDSGRSKGFGFVTLS 303
Query: 506 TIEEVEIAAQQFNGYTLEGR 565
+ +EV+ A NG L+GR
Sbjct: 304 SSQEVQKAINSLNGADLDGR 323