BLASTX nr result
ID: Zingiber24_contig00001955
seq
BLASTX 2.2.25 [Feb-01-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= Zingiber24_contig00001955
(2720 letters)
Database: ./nr
37,332,560 sequences; 13,225,080,153 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
ref|XP_002324295.1| SILENCING DEFECTIVE 1 family protein [Populu... 1129 0.0
ref|XP_002515520.1| RNA-dependent RNA polymerase, putative [Rici... 1111 0.0
ref|XP_004291459.1| PREDICTED: RNA-dependent RNA polymerase 6-li... 1099 0.0
ref|XP_002308662.1| SILENCING DEFECTIVE 1 family protein [Populu... 1096 0.0
ref|XP_004968861.1| PREDICTED: probable RNA-dependent RNA polyme... 1089 0.0
gb|EXB88201.1| RNA-dependent RNA polymerase 6 [Morus notabilis] 1085 0.0
ref|XP_006645957.1| PREDICTED: probable RNA-dependent RNA polyme... 1082 0.0
ref|XP_002457941.1| hypothetical protein SORBIDRAFT_03g022880 [S... 1082 0.0
ref|XP_006483356.1| PREDICTED: RNA-dependent RNA polymerase 6-li... 1080 0.0
gb|ACO72600.1| RNA-dependent RNA polymerase 6 [Nicotiana glutinosa] 1076 0.0
sp|Q8LHH9.1|SHL2_ORYSJ RecName: Full=Probable RNA-dependent RNA ... 1076 0.0
ref|XP_003561343.1| PREDICTED: probable RNA-dependent RNA polyme... 1075 0.0
gb|EMJ26639.1| hypothetical protein PRUPE_ppa000422mg [Prunus pe... 1074 0.0
emb|CBI21038.3| unnamed protein product [Vitis vinifera] 1073 0.0
ref|XP_002282647.1| PREDICTED: RNA-dependent RNA polymerase 6 [V... 1073 0.0
gb|ADI52625.1| RNA-dependent RNA polymerase 6 [Nicotiana tabacum] 1071 0.0
dbj|BAF96019.1| RNA-dependent RNA polymerase 6 [Nicotiana tabacum] 1069 0.0
ref|XP_004160762.1| PREDICTED: RNA-dependent RNA polymerase 6-li... 1069 0.0
ref|NP_001267634.1| RNA-dependent RNA polymerase 6-like [Cucumis... 1069 0.0
gb|ACA13601.1| RNA-dependent RNA polymerase [Nicotiana attenuata] 1067 0.0
>ref|XP_002324295.1| SILENCING DEFECTIVE 1 family protein [Populus trichocarpa]
gi|222865729|gb|EEF02860.1| SILENCING DEFECTIVE 1 family
protein [Populus trichocarpa]
Length = 1200
Score = 1129 bits (2920), Expect = 0.0
Identities = 558/810 (68%), Positives = 656/810 (80%), Gaps = 4/810 (0%)
Frame = -3
Query: 2715 VQDWLLKDRKLLRQPSN--ETVEVRRLAITPTKAYCLPAEVELSNRVLRKYKEVADRFLR 2542
VQ+WLLK+ L + P + VE+RRL ITPTKAYCLP EVELSNRVLRKYK+VADRFLR
Sbjct: 393 VQEWLLKNPNLFKNPKQLGDVVEIRRLVITPTKAYCLPPEVELSNRVLRKYKDVADRFLR 452
Query: 2541 VTFMDEGMXXXXXXXXXXXVAPIVRDITFSSFPQKTTAFRRVNQILTNGFQLCGRKYSFL 2362
VTFMDEG+ VAPIVRDIT +SFPQKT F+RV ILT GF LCGR+YSFL
Sbjct: 453 VTFMDEGLQRMNSNVLNYYVAPIVRDITSNSFPQKTRIFKRVRSILTEGFYLCGRRYSFL 512
Query: 2361 AFSSNQLRDRSAWFFAEVVNTITVSNIRNWMGKFSNRNVAKCTARMGQCFSSTYATINVP 2182
AFS+NQLRD+SAWFF+E N I+V ++++WMGKF+NRN+AKC ARMGQCFSSTYATI VP
Sbjct: 513 AFSANQLRDQSAWFFSEERN-ISVLDVKSWMGKFTNRNIAKCAARMGQCFSSTYATIEVP 571
Query: 2181 PNEVNPDLEDIVRNEYVFSDGIGKITPDLALEVAEKLQLTDNPPSAYQIRYAGCKGVVAV 2002
P EVN DL DI RN YVFSDGIG ITPDLA EVAEKL+L +PP AYQIRYAGCKGVVA
Sbjct: 572 PEEVNSDLPDIERNGYVFSDGIGIITPDLAREVAEKLKLDIDPPCAYQIRYAGCKGVVAC 631
Query: 2001 WLGNGDGIRLSLRPSMNKFESNHTMLEVVSWTKIQPGFLNRQIITLLSSQQVPDSVFERM 1822
W G GDG+RLSLRPSMNKF+SNHT LE+ SWT+ QPGFLNRQIITLLS+ VPD+VF +M
Sbjct: 632 WPGKGDGVRLSLRPSMNKFQSNHTTLEICSWTRFQPGFLNRQIITLLSTLNVPDAVFWKM 691
Query: 1821 QETMIHKLNQMLVDADVAYEVLTTSCTEQSSTAAMMLSAGFRPQTEPHLKAMISCVRSSQ 1642
QETM+ KLNQM V++DVA++VLT SC +Q + AA+MLSAGF+P EPHL+ M++CVR++Q
Sbjct: 692 QETMVSKLNQMFVNSDVAFDVLTASCADQGNVAAIMLSAGFKPDREPHLRGMLTCVRAAQ 751
Query: 1641 LGDLLAKTRIFVSKARWLMGCLDELGVLEQGQCFIQTSSLSLENCFSKHGSRFSAPQKNR 1462
L DL KTRIFV RWLMGCLDELG+LEQGQCFIQ S+ SLE CF KHG++FS +KN
Sbjct: 752 LWDLREKTRIFVPSGRWLMGCLDELGMLEQGQCFIQVSNSSLEKCFMKHGAKFSEAEKNL 811
Query: 1461 QVIVGTVAMAKNPCLHPGDIRILEAVDVPSLHHLSDCLVFPQKGDRPHTNEASGSDLDGD 1282
QVI GTV +AKNPCLHPGD+R+LEAVDVP LHHL DCLVFPQKG+RPHTNEASGSDLDGD
Sbjct: 812 QVIKGTVVIAKNPCLHPGDVRVLEAVDVPGLHHLYDCLVFPQKGERPHTNEASGSDLDGD 871
Query: 1281 LYFVTWDQDLIPPSKKSSIAMDYTPAEVRNLPRQIFPQDIIDFYLKNMINENLGVICNAH 1102
LYFVTWD++LIPPSK+S I M Y AE + L R + QDII+F+ KNM+N+NLG ICNAH
Sbjct: 872 LYFVTWDENLIPPSKRSWIPMQYDAAEAKLLARPVNHQDIIEFFAKNMVNDNLGAICNAH 931
Query: 1101 VVHADRSEYGAFDENCLKLAELAAIAVDFPKTGKMVTLPPTLKPKCYPDFMGKDGYISYK 922
VVHAD SEYGA D+NCL LAELAA AVDFPKTGK+V++PP LKPK YPDFMGK+ Y SYK
Sbjct: 932 VVHADLSEYGATDKNCLTLAELAATAVDFPKTGKVVSMPPYLKPKMYPDFMGKEEYQSYK 991
Query: 921 SEKVLGKLYRKIKDVTDD--IDSSETACMVEDLPYDVDLEVVGSSDYLADAWQDKVVYER 748
SEK+LG+LYR+IKD D+ SSE + D+PYD DLEVVG+SDY++DAW K Y+
Sbjct: 992 SEKILGRLYRQIKDAYDEDVAASSELNLVPGDIPYDSDLEVVGASDYISDAWDQKCSYDG 1051
Query: 747 RLNALLAQYRVSSEGEVVTGHIWSLPKFNSRKQGELKERLKNAYSSLHKEHRHAFDTMAP 568
+LN LL+QY+V E EVVTGHIWS+PK++SRKQGELK+RLK++Y+SL KE R F+ M
Sbjct: 1052 QLNGLLSQYKVKREEEVVTGHIWSMPKYSSRKQGELKDRLKHSYNSLKKEFRQIFEKMDL 1111
Query: 567 DFLQLTDAEKGVLYERKASAWYQVTYHPQLVKKSLELNEPDLDLVPARLSFAWIAADYLV 388
+F QL D EK LYE+KASAWYQV YHP VKKSLEL +PD LSFAWIAADYL
Sbjct: 1112 EFEQLEDGEKNKLYEQKASAWYQVVYHPHWVKKSLELQDPDGAGTSVMLSFAWIAADYLA 1171
Query: 387 RIKIRCGDERRKLNSQRPIDSLASYLSERI 298
RIKIR E ++S +P++SLA YL++R+
Sbjct: 1172 RIKIR-HRETGNVDSAKPVNSLAKYLADRM 1200
>ref|XP_002515520.1| RNA-dependent RNA polymerase, putative [Ricinus communis]
gi|223545464|gb|EEF46969.1| RNA-dependent RNA polymerase,
putative [Ricinus communis]
Length = 1203
Score = 1111 bits (2873), Expect = 0.0
Identities = 557/816 (68%), Positives = 640/816 (78%), Gaps = 10/816 (1%)
Frame = -3
Query: 2715 VQDWLLKDRKLLRQPS--NETVEVRRLAITPTKAYCLPAEVELSNRVLRKYKEVADRFLR 2542
VQ WLLK+ KL R ++ VE+RRLAITPT+AYCLP EVELSNRVLR+YK++AD+FLR
Sbjct: 390 VQQWLLKNPKLFRSSKQLDDIVEIRRLAITPTRAYCLPPEVELSNRVLRRYKDIADQFLR 449
Query: 2541 VTFMDEGMXXXXXXXXXXXVAPIVRDITFSSFPQKTTAFRRVNQILTNGFQLCGRKYSFL 2362
VTFMDEG+ APIVRDIT +SF QKT F+RV ILT+GF LCGRKYSFL
Sbjct: 450 VTFMDEGLQTMNANTLTYYCAPIVRDITSNSFSQKTRIFKRVKSILTDGFYLCGRKYSFL 509
Query: 2361 AFSSNQLRDRSAWFFAEVVNTITVSNIRNWMGKFSNRNVAKCTARMGQCFSSTYATINVP 2182
AFSSNQLRDRSAWFFAE T +VS IRNWMGKF+NRN+AKC ARMGQCFSSTYAT+ VP
Sbjct: 510 AFSSNQLRDRSAWFFAEDGKT-SVSKIRNWMGKFTNRNIAKCAARMGQCFSSTYATVEVP 568
Query: 2181 PNEVNPDLEDIVRNEYVFSDGIGKITPDLALEVAEKLQLTDNPPSAYQIRYAGCKGVVAV 2002
E DL DI RN Y+FSDGIG ITPDLA EVAEKL+L NPP AYQIRYAGCKGVVA
Sbjct: 569 SAEAILDLPDIERNNYIFSDGIGMITPDLAKEVAEKLKLEVNPPCAYQIRYAGCKGVVAC 628
Query: 2001 WLGNGDGIRLSLRPSMNKFESNHTMLEVVSWTKIQPGFLNRQIITLLSSQQVPDSVFERM 1822
W + DGIRLSLR SMNKF SNHT LE+ SWT+ QPGFLNRQIITLLS+ VPD +F +M
Sbjct: 629 WPAHIDGIRLSLRVSMNKFHSNHTTLEICSWTRFQPGFLNRQIITLLSTLDVPDEIFWKM 688
Query: 1821 QETMIHKLNQMLVDADVAYEVLTTSCTEQSSTAAMMLSAGFRPQTEPHLKAMISCVRSSQ 1642
Q M+ KLNQM +DADVA++V+T SC EQ +TAA+MLSAGF P+TEPHL M++C+R++Q
Sbjct: 689 QIVMVSKLNQMFMDADVAFDVVTASCAEQGNTAAIMLSAGFNPKTEPHLCGMLTCIRAAQ 748
Query: 1641 LGDLLAKTRIFVSKARWLMGCLDELGVLEQGQCFIQTSSLSLENCFSKHGSRFSAPQKNR 1462
L L KTRIFV RWLMGCLDELGVLE GQCFIQ S+ SLE+CF KHGSRFS +K
Sbjct: 749 LWGLREKTRIFVPSGRWLMGCLDELGVLEHGQCFIQVSNPSLESCFWKHGSRFSESKKKL 808
Query: 1461 QVIVGTVAMAKNPCLHPGDIRILEAVDVPSLHHLSDCLVFPQKGDRPHTNEASGSDLDGD 1282
QV+ GTV +AKNPCLHPGDIRILEAVD P LHHL DCLVFPQKGDRPHTNEASGSDLDGD
Sbjct: 809 QVVKGTVVVAKNPCLHPGDIRILEAVDAPELHHLHDCLVFPQKGDRPHTNEASGSDLDGD 868
Query: 1281 LYFVTWDQDLIPPSKKSSIAMDYTPAEVRNLPRQIFPQDIIDFYLKNMINENLGVICNAH 1102
LYFVTWD++LIPPSK+S + M Y AE + L R + QDIIDF+ KNM+NENLG ICNAH
Sbjct: 869 LYFVTWDENLIPPSKRSWLPMQYDAAEAKQLNRPVNHQDIIDFFAKNMVNENLGAICNAH 928
Query: 1101 VVHADRSEYGAFDENCLKLAELAAIAVDFPKTGKMVTLPPTLKPKCYPDFMGKDGYISYK 922
VVHAD SEYGA DENC+KLAELAA AVDFPKTGK+VT+PP LKPK YPDFMGK+ Y SY
Sbjct: 929 VVHADLSEYGALDENCIKLAELAATAVDFPKTGKLVTMPPHLKPKLYPDFMGKEDYQSYN 988
Query: 921 SEKVLGKLYRKIKDVTDDID--------SSETACMVEDLPYDVDLEVVGSSDYLADAWQD 766
S K+LG+LYR++KD +D D SSE + D+PYD DLEV GSSDY+ DAW
Sbjct: 989 SNKILGRLYRQVKDDYNDDDDDDDDAATSSELNLVRGDIPYDKDLEVSGSSDYILDAWDQ 1048
Query: 765 KVVYERRLNALLAQYRVSSEGEVVTGHIWSLPKFNSRKQGELKERLKNAYSSLHKEHRHA 586
K Y+ +L LLAQY+V E EVVTGHIWS+PK NSRKQGELKERLK +Y SL KE R
Sbjct: 1049 KCSYDGQLKGLLAQYKVKREEEVVTGHIWSMPKCNSRKQGELKERLKQSYHSLKKEFRQV 1108
Query: 585 FDTMAPDFLQLTDAEKGVLYERKASAWYQVTYHPQLVKKSLELNEPDLDLVPARLSFAWI 406
F+ M DF QLT+ EK +LYE+KASAWYQV YHP+ V KS+EL EPD + LSFAWI
Sbjct: 1109 FEKMDSDFEQLTEDEKNLLYEQKASAWYQVAYHPKWVNKSMELQEPDAAGCASMLSFAWI 1168
Query: 405 AADYLVRIKIRCGDERRKLNSQRPIDSLASYLSERI 298
AADYL RIKIRC +++ +P++SL YL++RI
Sbjct: 1169 AADYLARIKIRCRG-FDGVDTSKPVNSLVKYLADRI 1203
>ref|XP_004291459.1| PREDICTED: RNA-dependent RNA polymerase 6-like [Fragaria vesca subsp.
vesca]
Length = 1197
Score = 1099 bits (2843), Expect = 0.0
Identities = 542/811 (66%), Positives = 645/811 (79%), Gaps = 4/811 (0%)
Frame = -3
Query: 2718 LVQDWLLKDRKLLRQPS--NETVEVRRLAITPTKAYCLPAEVELSNRVLRKYKEVADRFL 2545
LVQ+WLL++ KL++ P ++ EVRRL ITPTKAYCLP EVELSNRVLRKYKEVADRFL
Sbjct: 389 LVQEWLLRNPKLIKNPKRLDDIAEVRRLVITPTKAYCLPPEVELSNRVLRKYKEVADRFL 448
Query: 2544 RVTFMDEGMXXXXXXXXXXXVAPIVRDITFSSFPQKTTAFRRVNQILTNGFQLCGRKYSF 2365
RVTFMDEGM VAPIV++IT ++FPQKT + R+ IL NGF LCGRKYSF
Sbjct: 449 RVTFMDEGMQTMNSNVMNSYVAPIVKEITENTFPQKTKVYVRIRAILMNGFHLCGRKYSF 508
Query: 2364 LAFSSNQLRDRSAWFFAEVVNTITVSNIRNWMGKFSNRNVAKCTARMGQCFSSTYATINV 2185
LAFSSNQLRDRSAWFFAE TI++ I+NWMG+F+NRNVAKC ARMGQCFSSTYAT+ V
Sbjct: 509 LAFSSNQLRDRSAWFFAED-KTISIQGIKNWMGRFTNRNVAKCAARMGQCFSSTYATVEV 567
Query: 2184 PPNEVNPDLEDIVRNEYVFSDGIGKITPDLALEVAEKLQLTDNPPSAYQIRYAGCKGVVA 2005
P +VN +L DI RN YVFSDGIG+ITPDLA+EVAEKL+L +PPSAYQIRY GCKGVVA
Sbjct: 568 PSTQVNHELPDIERNGYVFSDGIGRITPDLAMEVAEKLKLDRDPPSAYQIRYGGCKGVVA 627
Query: 2004 VWLGNGDGIRLSLRPSMNKFESNHTMLEVVSWTKIQPGFLNRQIITLLSSQQVPDSVFER 1825
W GDG RLSLR SMNKF S+HT LE+ SWT++QPGFLNRQIITLLS+ VPD +F
Sbjct: 628 CWPSTGDGFRLSLRRSMNKFASDHTTLEICSWTRLQPGFLNRQIITLLSALNVPDEIFWT 687
Query: 1824 MQETMIHKLNQMLVDADVAYEVLTTSCTEQSSTAAMMLSAGFRPQTEPHLKAMISCVRSS 1645
MQETM+ KL QMLVD DVA++VLT SC EQ ++AA+MLSAGF+PQTEPHL+ M++C++++
Sbjct: 688 MQETMVSKLKQMLVDTDVAFDVLTASCAEQGNSAAIMLSAGFKPQTEPHLRGMLTCIQAA 747
Query: 1644 QLGDLLAKTRIFVSKARWLMGCLDELGVLEQGQCFIQTSSLSLENCFSKHGSRFSAPQKN 1465
QL L KTRIFV RWLMGCLDELGVLEQGQCF+Q S+ SLENCF+KHGSRF KN
Sbjct: 748 QLWGLREKTRIFVPSGRWLMGCLDELGVLEQGQCFVQVSTPSLENCFAKHGSRFDQTDKN 807
Query: 1464 RQVIVGTVAMAKNPCLHPGDIRILEAVDVPSLHHLSDCLVFPQKGDRPHTNEASGSDLDG 1285
QVI G V +AKNPCLHPGDIRILEAVD P LHHL DCLVFPQKG RPHT+EASGSDLDG
Sbjct: 808 LQVIKGFVVVAKNPCLHPGDIRILEAVDAPGLHHLHDCLVFPQKGHRPHTDEASGSDLDG 867
Query: 1284 DLYFVTWDQDLIPPSKKSSIAMDYTPAEVRNLPRQIFPQDIIDFYLKNMINENLGVICNA 1105
DLYFVTWD++LIPP KKS M+Y PAE + R + QD+I+F+++NM+NENLG ICNA
Sbjct: 868 DLYFVTWDENLIPPRKKSWQPMEYEPAEAKLSGRSVTSQDLIEFFVRNMVNENLGAICNA 927
Query: 1104 HVVHADRSEYGAFDENCLKLAELAAIAVDFPKTGKMVTLPPTLKPKCYPDFMGKDGYISY 925
HVVH+DRSEYGAFDENCLKLAELAA+AVDFPKTGK+VT+PP LKPK YPDFMGK Y SY
Sbjct: 928 HVVHSDRSEYGAFDENCLKLAELAAVAVDFPKTGKIVTMPPHLKPKLYPDFMGKQDYQSY 987
Query: 924 KSEKVLGKLYRKIKDVTDD--IDSSETACMVEDLPYDVDLEVVGSSDYLADAWQDKVVYE 751
KS K+LG+LYRKI D D+ +SSE + D+ YD+DLEV ++D++ADAW+ K Y+
Sbjct: 988 KSNKILGRLYRKICDAYDEDVANSSEQNHVPSDVKYDMDLEVPKAADFIADAWERKCSYD 1047
Query: 750 RRLNALLAQYRVSSEGEVVTGHIWSLPKFNSRKQGELKERLKNAYSSLHKEHRHAFDTMA 571
+L L+ QY++ E E+VTGH+WS+PK+ SRKQGEL+ERLK++YS+L KE R F+ M
Sbjct: 1048 SQLRGLMTQYKIMREEEIVTGHVWSMPKYTSRKQGELQERLKHSYSALKKEFRQFFEKMD 1107
Query: 570 PDFLQLTDAEKGVLYERKASAWYQVTYHPQLVKKSLELNEPDLDLVPARLSFAWIAADYL 391
F L D +K YE+KASAWYQVTYHP VKKSL+L+ PD LSFAWIAADYL
Sbjct: 1108 TGFESLIDDQKNSFYEQKASAWYQVTYHPDWVKKSLDLHGPDGPGDVVMLSFAWIAADYL 1167
Query: 390 VRIKIRCGDERRKLNSQRPIDSLASYLSERI 298
RIKI+ E ++ ++PI+ L YL++RI
Sbjct: 1168 ARIKIK-RREVSNIDPKKPINILTKYLADRI 1197
>ref|XP_002308662.1| SILENCING DEFECTIVE 1 family protein [Populus trichocarpa]
gi|222854638|gb|EEE92185.1| SILENCING DEFECTIVE 1 family
protein [Populus trichocarpa]
Length = 1198
Score = 1096 bits (2834), Expect = 0.0
Identities = 547/812 (67%), Positives = 641/812 (78%), Gaps = 5/812 (0%)
Frame = -3
Query: 2718 LVQDWLLKDRKLLRQPS--NETVEVRRLAITPTKAYCLPAEVELSNRVLRKYKEVADRFL 2545
+ Q+WLLK+ K + ++ E+RRL ITPTKAYCLP EVELSNRVLRKYK+VADRFL
Sbjct: 389 VAQEWLLKNPKFFKNQKKLDDIAEIRRLVITPTKAYCLPPEVELSNRVLRKYKDVADRFL 448
Query: 2544 RVTFMDEGMXXXXXXXXXXXVAPIVRDITFSSFPQKTTAFRRVNQILTNGFQLCGRKYSF 2365
RVTFMDEG+ APIVR IT SFPQKT F+RV ILT GF LCGR+YSF
Sbjct: 449 RVTFMDEGLQTMNSNALNYFAAPIVRAITSYSFPQKTRIFKRVRSILTEGFYLCGRRYSF 508
Query: 2364 LAFSSNQLRDRSAWFFAEVVNTITVSNIRNWMGKFSNRNVAKCTARMGQCFSSTYATINV 2185
LAFSSNQLRDRSAWFFAE N I V I++WMGKF+N+N+AKC ARMGQCFSSTYATI V
Sbjct: 509 LAFSSNQLRDRSAWFFAEDRN-INVMAIKSWMGKFTNKNIAKCAARMGQCFSSTYATIEV 567
Query: 2184 PPNEVNPDLEDIVRNEYVFSDGIGKITPDLALEVAEKLQLTDNPPSAYQIRYAGCKGVVA 2005
PP EVN DL DI RN Y FSDGIG ITPDLA EVAEKL+ +PP AYQIRYAGCKGVVA
Sbjct: 568 PPEEVNSDLPDIKRNGYDFSDGIGMITPDLAREVAEKLKFDFDPPCAYQIRYAGCKGVVA 627
Query: 2004 VWLGNGDGIRLSLRPSMNKFESNHTMLEVVSWTKIQPGFLNRQIITLLSSQQVPDSVFER 1825
W GDGIRLSLR SMNKF+SNHT+LE+ SWT+ QPGFLNRQIITLLS+ VPD+VF +
Sbjct: 628 CWPEQGDGIRLSLRSSMNKFQSNHTILEICSWTRFQPGFLNRQIITLLSALNVPDAVFWK 687
Query: 1824 MQETMIHKLNQMLVDADVAYEVLTTSCTEQSSTAAMMLSAGFRPQTEPHLKAMISCVRSS 1645
MQE M+ KLNQMLVD+DVA++VLT SC EQ + AA+MLSAGF+PQ EPHL+ M++CVR++
Sbjct: 688 MQELMVSKLNQMLVDSDVAFDVLTASCAEQGNVAAIMLSAGFKPQKEPHLRGMLTCVRAA 747
Query: 1644 QLGDLLAKTRIFVSKARWLMGCLDELGVLEQGQCFIQTSSLSLENCFSKHGSRFSAPQKN 1465
QL L K RIFV RWLMGCLDELGVLEQGQCFIQ S+ LENCF KHGS+FS +KN
Sbjct: 748 QLWGLREKARIFVPSGRWLMGCLDELGVLEQGQCFIQVSNSYLENCFVKHGSKFSETKKN 807
Query: 1464 RQVIVGTVAMAKNPCLHPGDIRILEAVDVPSLHHLSDCLVFPQKGDRPHTNEASGSDLDG 1285
QV+ GTV +AKNPCLHPGDIRILEAVD P LHHL DCLVFPQKG+RPH NEASGSDLDG
Sbjct: 808 LQVVKGTVVIAKNPCLHPGDIRILEAVDAPGLHHLYDCLVFPQKGERPHANEASGSDLDG 867
Query: 1284 DLYFVTWDQDLIPPSKKSSIAMDYTPAEVRNLPRQIFPQDIIDFYLKNMINENLGVICNA 1105
DLYFVTWD++LIPPSK+S I M Y AE + L R + QDI++F+ KNM NENLG ICNA
Sbjct: 868 DLYFVTWDENLIPPSKRSWIPMQYDAAEAKQLTRPVNHQDIVEFFAKNMANENLGAICNA 927
Query: 1104 HVVHADRSEYGAFDENCLKLAELAAIAVDFPKTGKMVTLPPTLKPKCYPDFMGKDGYISY 925
HVV AD SEYGA DE CL LAELAA AVDFPKTGK+V++P LKPK YPDFMGK+ + SY
Sbjct: 928 HVVRADLSEYGALDEKCLTLAELAATAVDFPKTGKIVSMPSDLKPKIYPDFMGKEEHQSY 987
Query: 924 KSEKVLGKLYRKIKDVTDDID---SSETACMVEDLPYDVDLEVVGSSDYLADAWQDKVVY 754
KS+K+LG+LYR+IKD DD D SSE + D+PYD+DLEV+G++D+++DAW K Y
Sbjct: 988 KSKKILGRLYRQIKDAYDDDDVAASSELNFVRGDIPYDLDLEVLGATDFISDAWDRKCSY 1047
Query: 753 ERRLNALLAQYRVSSEGEVVTGHIWSLPKFNSRKQGELKERLKNAYSSLHKEHRHAFDTM 574
+ +LN LLAQY+V E EVVTGH+WS+PK +SRKQG+LKERLK++Y+ L +E R F+ M
Sbjct: 1048 DGQLNGLLAQYKVKREEEVVTGHVWSMPKGSSRKQGDLKERLKHSYNCLKREFRQVFEKM 1107
Query: 573 APDFLQLTDAEKGVLYERKASAWYQVTYHPQLVKKSLELNEPDLDLVPARLSFAWIAADY 394
DF QL D EK +LYERKASAWYQVTYHP ++KSLEL + D + LSFAWIAADY
Sbjct: 1108 DLDFGQLDDDEKNMLYERKASAWYQVTYHPHWIQKSLELQDSDGAGISVMLSFAWIAADY 1167
Query: 393 LVRIKIRCGDERRKLNSQRPIDSLASYLSERI 298
L RIKIR ++S +P++SLA YL++R+
Sbjct: 1168 LARIKIR-HSRIGNVDSAKPVNSLAKYLADRM 1198
>ref|XP_004968861.1| PREDICTED: probable RNA-dependent RNA polymerase SHL2-like [Setaria
italica]
Length = 1211
Score = 1089 bits (2817), Expect = 0.0
Identities = 540/805 (67%), Positives = 639/805 (79%), Gaps = 1/805 (0%)
Frame = -3
Query: 2715 VQDWLLKDRKLLRQP-SNETVEVRRLAITPTKAYCLPAEVELSNRVLRKYKEVADRFLRV 2539
+QD + ++ KLLR +E EVRRL ITPT+AYCLP EVE SNRV+R Y+EVADRFLRV
Sbjct: 407 LQDRVARNPKLLRNKIGHENSEVRRLVITPTRAYCLPPEVERSNRVIRHYREVADRFLRV 466
Query: 2538 TFMDEGMXXXXXXXXXXXVAPIVRDITFSSFPQKTTAFRRVNQILTNGFQLCGRKYSFLA 2359
TFMDEGM A IV+D+ +SF KTT ++RV LT GF +CGRKYSFLA
Sbjct: 467 TFMDEGMQQLNSNVLNFSAAQIVKDLMSNSFQHKTTVYKRVKTFLTEGFHMCGRKYSFLA 526
Query: 2358 FSSNQLRDRSAWFFAEVVNTITVSNIRNWMGKFSNRNVAKCTARMGQCFSSTYATINVPP 2179
FSSNQLRDRSAWFFAE T TV +IR WMG+F+++NVAK ARMGQCFSSTYAT+ + P
Sbjct: 527 FSSNQLRDRSAWFFAED-RTRTVESIRKWMGRFTSKNVAKHAARMGQCFSSTYATVVMQP 585
Query: 2178 NEVNPDLEDIVRNEYVFSDGIGKITPDLALEVAEKLQLTDNPPSAYQIRYAGCKGVVAVW 1999
+EVN LED+ RN YVFSDGIGKITPDLA+EVA+ LQLTDNPPSAYQIRYAG KGV+AVW
Sbjct: 586 DEVNECLEDVERNGYVFSDGIGKITPDLAMEVAKTLQLTDNPPSAYQIRYAGFKGVIAVW 645
Query: 1998 LGNGDGIRLSLRPSMNKFESNHTMLEVVSWTKIQPGFLNRQIITLLSSQQVPDSVFERMQ 1819
G DGIRLSLRPSM+KFES HT+LEVVSWTK QPGFLNRQIITLLSS VPD++F +MQ
Sbjct: 646 QGENDGIRLSLRPSMHKFESTHTVLEVVSWTKFQPGFLNRQIITLLSSLNVPDAIFSQMQ 705
Query: 1818 ETMIHKLNQMLVDADVAYEVLTTSCTEQSSTAAMMLSAGFRPQTEPHLKAMISCVRSSQL 1639
E M+ LN +L D DVA++V+TTSC EQ +TAA+MLSAGF P TEPHLKAM+ +RSSQL
Sbjct: 706 EAMLSNLNNILSDTDVAFDVVTTSCAEQGNTAALMLSAGFSPGTEPHLKAMLLAIRSSQL 765
Query: 1638 GDLLAKTRIFVSKARWLMGCLDELGVLEQGQCFIQTSSLSLENCFSKHGSRFSAPQKNRQ 1459
LL KTRIFV K RWLMGCLDELG+LEQGQCFIQ SS L N KHG + S+ KN +
Sbjct: 766 LGLLEKTRIFVPKGRWLMGCLDELGILEQGQCFIQASSPMLNNFLVKHGPKCSSANKNAE 825
Query: 1458 VIVGTVAMAKNPCLHPGDIRILEAVDVPSLHHLSDCLVFPQKGDRPHTNEASGSDLDGDL 1279
IVGTV MAKNPCLHPGD+RILEAVDVP LHHL DCLVFP+KG+RPH NEASGSDLDGDL
Sbjct: 826 TIVGTVVMAKNPCLHPGDVRILEAVDVPELHHLVDCLVFPKKGERPHANEASGSDLDGDL 885
Query: 1278 YFVTWDQDLIPPSKKSSIAMDYTPAEVRNLPRQIFPQDIIDFYLKNMINENLGVICNAHV 1099
YFVTWD+ LIPP KKS MDYTPAE + LPRQ+ DI+DF+LKNM+NE LG I NAHV
Sbjct: 886 YFVTWDEKLIPPGKKSWNPMDYTPAEAKQLPRQVSQHDIVDFFLKNMVNEKLGPISNAHV 945
Query: 1098 VHADRSEYGAFDENCLKLAELAAIAVDFPKTGKMVTLPPTLKPKCYPDFMGKDGYISYKS 919
VHAD SEYGA DE C++LAELAA AVDFPKTGK+V++PP+L+PK YPDFM KD I+YKS
Sbjct: 946 VHADTSEYGAMDEKCIQLAELAATAVDFPKTGKIVSMPPSLRPKLYPDFMQKDEAITYKS 1005
Query: 918 EKVLGKLYRKIKDVTDDIDSSETACMVEDLPYDVDLEVVGSSDYLADAWQDKVVYERRLN 739
+K+LG+LYR I++ + E C + DLPYD D+EV G++D+L+ AW K YE +LN
Sbjct: 1006 DKILGRLYRSIQEASSSDLVPEETCTLNDLPYDTDMEVPGATDFLSSAWLCKCSYEAQLN 1065
Query: 738 ALLAQYRVSSEGEVVTGHIWSLPKFNSRKQGELKERLKNAYSSLHKEHRHAFDTMAPDFL 559
ALL QY V +E E+VT HIWSLPK++SRKQG++KERLKN+YS+L KE R F+++ D
Sbjct: 1066 ALLNQYGVRTEAELVTEHIWSLPKYSSRKQGDIKERLKNSYSALRKELRSTFESIETDET 1125
Query: 558 QLTDAEKGVLYERKASAWYQVTYHPQLVKKSLELNEPDLDLVPARLSFAWIAADYLVRIK 379
++++ EK +YE KASAWYQVTYHP+ V+KS E+ PD + +PARLSFAWIA DYL RIK
Sbjct: 1126 EISEDEKNRVYEMKASAWYQVTYHPKWVQKSREMLGPDCEEMPARLSFAWIAVDYLARIK 1185
Query: 378 IRCGDERRKLNSQRPIDSLASYLSE 304
IRC E R NSQRP++ LA+Y+SE
Sbjct: 1186 IRCQGEVRS-NSQRPVERLAAYISE 1209
>gb|EXB88201.1| RNA-dependent RNA polymerase 6 [Morus notabilis]
Length = 1194
Score = 1085 bits (2806), Expect = 0.0
Identities = 545/815 (66%), Positives = 647/815 (79%), Gaps = 9/815 (1%)
Frame = -3
Query: 2715 VQDWLLKDRKLLRQPS--NETVEVRRLAITPTKAYCLPAEVELSNRVLRKYKEVADRFLR 2542
VQ+WLL++ KLL+ P ++ EVRRL ITPT+AYCLP EVELSNRVLRKYKEV+DRFLR
Sbjct: 386 VQEWLLRNPKLLKIPRQLDDIAEVRRLVITPTRAYCLPPEVELSNRVLRKYKEVSDRFLR 445
Query: 2541 VTFMDEGMXXXXXXXXXXXVAPIVRDITFSSFPQKTTAFRRVNQILTNGFQLCGRKYSFL 2362
VTFMDEGM APIV+++T +S QKT F+RV +LT+GF LCG++YSFL
Sbjct: 446 VTFMDEGMQTMNLNVLTYYPAPIVKELTSNSTSQKTKVFKRVKSLLTDGFYLCGQRYSFL 505
Query: 2361 AFSSNQLRDRSAWFFAEVVNTITVSNIRNWMGKFSNRNVAKCTARMGQCFSSTYATINVP 2182
AFSSNQLRDRSAWFFAE ITV+ I+ WMG+F+NRN+AKC ARMGQCFSSTYAT+ VP
Sbjct: 506 AFSSNQLRDRSAWFFAED-GKITVNGIKKWMGRFNNRNIAKCAARMGQCFSSTYATVEVP 564
Query: 2181 PNEVNPDLEDIVRNEYVFSDGIGKITPDLALEVAEKLQLTDNPPSAYQIRYAGCKGVVAV 2002
EVN DLE+I RN YVFSDGIG ITPDLA EVAEKL+L NPPSAYQIRYAGCKGVVA
Sbjct: 565 LTEVNFDLEEIERNTYVFSDGIGMITPDLAKEVAEKLKLDINPPSAYQIRYAGCKGVVAC 624
Query: 2001 WLGNGDGIRLSLRPSMNKFESNHTMLEVVSWTKIQPGFLNRQIITLLSSQQVPDSVFERM 1822
W GDGIRLSLR SMNKF+S HT+LE+ SWT+ QPGFLNRQI+TLLS+ V D +F +M
Sbjct: 625 WPPKGDGIRLSLRRSMNKFDSKHTILEICSWTRFQPGFLNRQIVTLLSTLNVRDEIFWKM 684
Query: 1821 QETMIHKLNQMLVDADVAYEVLTTSCTEQSSTAAMMLSAGFRPQTEPHLKAMISCVRSSQ 1642
QETM+ KLNQML DADVA+ VLT SC EQ + A+MLSAGF+PQ+EPHL+ M++C+R++Q
Sbjct: 685 QETMLFKLNQMLTDADVAFNVLTASCPEQGNVGAIMLSAGFKPQSEPHLQGMLTCIRAAQ 744
Query: 1641 LGDLLAKTRIFVSKARWLMGCLDELGVLEQGQCFIQTSSLSLENCFSKHGSRFSAPQKNR 1462
L L K RIFV RWLMGCLDELGVLEQGQCFIQ S+ SLENCFSKHGSRFS + N
Sbjct: 745 LWGLREKARIFVPLGRWLMGCLDELGVLEQGQCFIQVSTPSLENCFSKHGSRFSETKNNL 804
Query: 1461 QVIVGTVAMAKNPCLHPGDIRILEAVDVPSLHHLSDCLVFPQKGDRPHTNEASGSDLDGD 1282
+VI G V +AKNPCLHPGDIRILEAVDVP LHHL DCLVFPQKGDRPH NEASGSDLDGD
Sbjct: 805 EVIKGFVVIAKNPCLHPGDIRILEAVDVPGLHHLYDCLVFPQKGDRPHANEASGSDLDGD 864
Query: 1281 LYFVTWDQDLIPPSKKSSIAMDYTPAEVRNLPRQIFPQDIIDFYLKNMINENLGVICNAH 1102
LYFVTWD++LIPPSKKS M Y PA+ R LPR + +DIIDF+ +NM+NE+LG ICNAH
Sbjct: 865 LYFVTWDENLIPPSKKSWNPMQYDPAKPRTLPRDVTQKDIIDFFSRNMVNESLGAICNAH 924
Query: 1101 VVHADRSEYGAFDENCLKLAELAAIAVDFPKTGKMVTLPPTLKPKCYPDFMGKDGYISYK 922
VVHAD S+YGA DE CL LAELAAIAVDFPKTG +VT+P LKPK YPDFMGK+ Y SYK
Sbjct: 925 VVHADLSDYGALDEKCLSLAELAAIAVDFPKTGIIVTMPAHLKPKIYPDFMGKEEYQSYK 984
Query: 921 SEKVLGKLYRKIKD-VTDDID-SSETACMVEDLPYDVDLEVVGSSDYLADAWQDKVVYER 748
S K++G+LYR+IKD +DD+ SSE + ++P+D DLEV G++D+L DAW+ K Y+
Sbjct: 985 STKIMGRLYRQIKDEYSDDVSPSSELNIVSSNIPFDTDLEVPGAADFLDDAWEKKCSYDG 1044
Query: 747 RLNALLAQYRVSSEGEVVTGHIWSLPKFNSRKQGELKERLKNAYSSLHKEHRHAFDTMAP 568
+L L+ QY+V E EVVTG IWS+PK NSRK+G+LKERLK++Y+ L KE R F+ +
Sbjct: 1045 QLKGLMIQYKVKREEEVVTGQIWSMPKHNSRKEGDLKERLKHSYTGLRKEFRQVFEKVDS 1104
Query: 567 DFLQLTDAEKGVLYERKASAWYQVTYHPQLVKKSLELNEPDLDLVP--ARLSFAWIAADY 394
DF QLTD EK VLYE++ASAWYQ+TYHP+ VKKS ++++ L+ V LSFAWIAADY
Sbjct: 1105 DFEQLTDDEKNVLYEKRASAWYQITYHPKWVKKSQDMHD-QLEEVKNVVMLSFAWIAADY 1163
Query: 393 LVRIKIRC---GDERRKLNSQRPIDSLASYLSERI 298
L RIKIRC GD +S +PI+SL YL++RI
Sbjct: 1164 LARIKIRCRGVGD----ADSTKPINSLGKYLADRI 1194
>ref|XP_006645957.1| PREDICTED: probable RNA-dependent RNA polymerase SHL2-like [Oryza
brachyantha]
Length = 1105
Score = 1082 bits (2799), Expect = 0.0
Identities = 539/805 (66%), Positives = 645/805 (80%), Gaps = 1/805 (0%)
Frame = -3
Query: 2709 DWLLKDRKLL-RQPSNETVEVRRLAITPTKAYCLPAEVELSNRVLRKYKEVADRFLRVTF 2533
D + ++ KLL + ++ EVRRL ITPT+AYCLP EVE SNRVLR+Y+EVADRFLRVTF
Sbjct: 304 DRVARNPKLLCSKIGDDNEEVRRLVITPTRAYCLPPEVERSNRVLRRYREVADRFLRVTF 363
Query: 2532 MDEGMXXXXXXXXXXXVAPIVRDITFSSFPQKTTAFRRVNQILTNGFQLCGRKYSFLAFS 2353
MDEGM APIV+D+ + F QKTT ++RV +LT GF LCGRKYSFLAFS
Sbjct: 364 MDEGMEMLNNHVLNSFTAPIVKDLMSNYFQQKTTVYKRVRLLLTEGFHLCGRKYSFLAFS 423
Query: 2352 SNQLRDRSAWFFAEVVNTITVSNIRNWMGKFSNRNVAKCTARMGQCFSSTYATINVPPNE 2173
SNQLRD+SAWFFAE NT TV IR WMG+F+++NVAK ARMGQCFSSTYAT+ + +E
Sbjct: 424 SNQLRDKSAWFFAEDRNT-TVEGIRKWMGRFTSKNVAKHAARMGQCFSSTYATVTMQLDE 482
Query: 2172 VNPDLEDIVRNEYVFSDGIGKITPDLALEVAEKLQLTDNPPSAYQIRYAGCKGVVAVWLG 1993
V+ + +DIV N+Y+FSDGIGKITPDLALEVAE+LQLTDNPPSAYQIRYAG KGV+AVW G
Sbjct: 483 VDENFDDIVHNDYIFSDGIGKITPDLALEVAERLQLTDNPPSAYQIRYAGFKGVIAVWQG 542
Query: 1992 NGDGIRLSLRPSMNKFESNHTMLEVVSWTKIQPGFLNRQIITLLSSQQVPDSVFERMQET 1813
NGDGIRLSLRPSM KFES+H++LEVVSWTK QPGFLNRQIITLLSS VPD++F +MQET
Sbjct: 543 NGDGIRLSLRPSMRKFESSHSVLEVVSWTKFQPGFLNRQIITLLSSLNVPDAIFSQMQET 602
Query: 1812 MIHKLNQMLVDADVAYEVLTTSCTEQSSTAAMMLSAGFRPQTEPHLKAMISCVRSSQLGD 1633
M+ LN +L D DVA+EVLT SC E +TAA+MLSAGF P +EPHLKAM+ +RS+QL D
Sbjct: 603 MLSNLNNILSDRDVAFEVLT-SCAEDGNTAALMLSAGFEPGSEPHLKAMLLAIRSAQLQD 661
Query: 1632 LLAKTRIFVSKARWLMGCLDELGVLEQGQCFIQTSSLSLENCFSKHGSRFSAPQKNRQVI 1453
LL K RIFV K RWLMGCLDELGVLEQGQCFI+ S SL + F KHGSRFS+ +N ++I
Sbjct: 662 LLEKARIFVPKGRWLMGCLDELGVLEQGQCFIRASVPSLNSYFKKHGSRFSSADRNTEII 721
Query: 1452 VGTVAMAKNPCLHPGDIRILEAVDVPSLHHLSDCLVFPQKGDRPHTNEASGSDLDGDLYF 1273
VGTV +AKNPCLHPGD+RILEAVDVP LHHL DCLVFPQKG+RPH NEASGSDLDGDLYF
Sbjct: 722 VGTVVIAKNPCLHPGDVRILEAVDVPELHHLVDCLVFPQKGERPHANEASGSDLDGDLYF 781
Query: 1272 VTWDQDLIPPSKKSSIAMDYTPAEVRNLPRQIFPQDIIDFYLKNMINENLGVICNAHVVH 1093
VTWD+ LIPP KKS MDY+P E + LPR + DIIDF+LKNMI+ENLG ICNAHVVH
Sbjct: 782 VTWDEKLIPPGKKSWNPMDYSPPEAKQLPRPVSQHDIIDFFLKNMISENLGRICNAHVVH 841
Query: 1092 ADRSEYGAFDENCLKLAELAAIAVDFPKTGKMVTLPPTLKPKCYPDFMGKDGYISYKSEK 913
AD SEYGA DE C+ LAELAA AVDFPKTGK+ +P LKPK YPDFMGK+ +SYKSEK
Sbjct: 842 ADLSEYGAMDEKCIHLAELAATAVDFPKTGKLAIMPQHLKPKVYPDFMGKEESLSYKSEK 901
Query: 912 VLGKLYRKIKDVTDDIDSSETACMVEDLPYDVDLEVVGSSDYLADAWQDKVVYERRLNAL 733
+LG+LYR I++ ++ SE C DLPYD+DLEV G+SD+LA AWQ K YE +L+AL
Sbjct: 902 ILGRLYRSIQEASNGDVVSEEVCTPNDLPYDIDLEVPGASDFLASAWQCKCSYEAQLSAL 961
Query: 732 LAQYRVSSEGEVVTGHIWSLPKFNSRKQGELKERLKNAYSSLHKEHRHAFDTMAPDFLQL 553
L QY+V +E E+VTG+I S+ K+NS+KQGE+KERLK AYS+L KE R F+++A D +L
Sbjct: 962 LNQYKVHTEAELVTGNITSVTKYNSKKQGEIKERLKQAYSALRKEFRSTFESIASDQCEL 1021
Query: 552 TDAEKGVLYERKASAWYQVTYHPQLVKKSLELNEPDLDLVPARLSFAWIAADYLVRIKIR 373
+ EK +LYE KASAWYQVTYHP+ V+KS + +PD + +PARLSFAWI DYLVRIK++
Sbjct: 1022 GEDEKNLLYEMKASAWYQVTYHPKWVEKSRGMLDPDGEGMPARLSFAWIPVDYLVRIKLK 1081
Query: 372 CGDERRKLNSQRPIDSLASYLSERI 298
+ R + Q+P+D LA+Y+SER+
Sbjct: 1082 SHGKVR-VEGQKPVDRLATYISERL 1105
>ref|XP_002457941.1| hypothetical protein SORBIDRAFT_03g022880 [Sorghum bicolor]
gi|241929916|gb|EES03061.1| hypothetical protein
SORBIDRAFT_03g022880 [Sorghum bicolor]
Length = 1207
Score = 1082 bits (2798), Expect = 0.0
Identities = 530/804 (65%), Positives = 638/804 (79%), Gaps = 1/804 (0%)
Frame = -3
Query: 2715 VQDWLLKDRKLLRQP-SNETVEVRRLAITPTKAYCLPAEVELSNRVLRKYKEVADRFLRV 2539
+QD + + KLLR ++ EVRRL +TPTKAYCLP EVE SNRV+R Y+EV DRFLRV
Sbjct: 403 LQDRVARYPKLLRNKIGDDNSEVRRLVVTPTKAYCLPPEVERSNRVIRHYREVTDRFLRV 462
Query: 2538 TFMDEGMXXXXXXXXXXXVAPIVRDITFSSFPQKTTAFRRVNQILTNGFQLCGRKYSFLA 2359
TFMDEGM A IV+D+ +SF KTT ++R+ LT GF +CGRKYSFLA
Sbjct: 463 TFMDEGMQLLNSNVLNFSAAQIVKDLMSNSFLHKTTVYKRIKTFLTEGFHMCGRKYSFLA 522
Query: 2358 FSSNQLRDRSAWFFAEVVNTITVSNIRNWMGKFSNRNVAKCTARMGQCFSSTYATINVPP 2179
FSSNQLRDRSAWFFAE TV IR WMG+F+++NVAK ARMGQCFSSTYAT+ + P
Sbjct: 523 FSSNQLRDRSAWFFAED-RMRTVETIRKWMGRFTSKNVAKHAARMGQCFSSTYATVVMQP 581
Query: 2178 NEVNPDLEDIVRNEYVFSDGIGKITPDLALEVAEKLQLTDNPPSAYQIRYAGCKGVVAVW 1999
+EVN LE++ RN Y+FSDGIGKIT DLALEVA+KL+LTDNPPSAYQIRYAG KGV+AVW
Sbjct: 582 HEVNECLEEVERNGYIFSDGIGKITCDLALEVAQKLRLTDNPPSAYQIRYAGFKGVIAVW 641
Query: 1998 LGNGDGIRLSLRPSMNKFESNHTMLEVVSWTKIQPGFLNRQIITLLSSQQVPDSVFERMQ 1819
G DGIRLSLRPSM+KFESNH +LEVVSWTK QPGFLNRQIITLLSS VPD++F +MQ
Sbjct: 642 EGENDGIRLSLRPSMHKFESNHNVLEVVSWTKFQPGFLNRQIITLLSSLNVPDAIFSQMQ 701
Query: 1818 ETMIHKLNQMLVDADVAYEVLTTSCTEQSSTAAMMLSAGFRPQTEPHLKAMISCVRSSQL 1639
E M+ LN +L D DVA++++TTSC EQ +TAA+MLSAG P TEPHLKAM+ +RSSQL
Sbjct: 702 EAMLSNLNNILSDTDVAFDIVTTSCAEQGNTAALMLSAGISPGTEPHLKAMLLAIRSSQL 761
Query: 1638 GDLLAKTRIFVSKARWLMGCLDELGVLEQGQCFIQTSSLSLENCFSKHGSRFSAPQKNRQ 1459
LL KTRIFV K RWLMGCLDELG+LEQGQCFI+ SS SL NC KHG RFS+ KN +
Sbjct: 762 LGLLEKTRIFVPKGRWLMGCLDELGILEQGQCFIRASSPSLNNCLVKHGPRFSSANKNAE 821
Query: 1458 VIVGTVAMAKNPCLHPGDIRILEAVDVPSLHHLSDCLVFPQKGDRPHTNEASGSDLDGDL 1279
IVGT+ MAKNPCLHPGD+RILEAVDVP LHHL DCLVFP+KG+RPH NEASGSDLDGDL
Sbjct: 822 TIVGTIVMAKNPCLHPGDVRILEAVDVPELHHLVDCLVFPKKGERPHANEASGSDLDGDL 881
Query: 1278 YFVTWDQDLIPPSKKSSIAMDYTPAEVRNLPRQIFPQDIIDFYLKNMINENLGVICNAHV 1099
YFVTWD++LIPP KKS MDY+P E + LPR + P DI+DF+LKNM+NE LG I NAHV
Sbjct: 882 YFVTWDENLIPPGKKSWNPMDYSPTEAKQLPRAVSPHDIVDFFLKNMVNEKLGPISNAHV 941
Query: 1098 VHADRSEYGAFDENCLKLAELAAIAVDFPKTGKMVTLPPTLKPKCYPDFMGKDGYISYKS 919
VHAD SEYGA DE C++LAELAA AVDFPKTGK+V++PP+L+PK YPDFMGK+ ISYKS
Sbjct: 942 VHADMSEYGAMDEKCIQLAELAATAVDFPKTGKIVSMPPSLRPKLYPDFMGKEDAISYKS 1001
Query: 918 EKVLGKLYRKIKDVTDDIDSSETACMVEDLPYDVDLEVVGSSDYLADAWQDKVVYERRLN 739
EK+LG+LYR I++ + E C + DLPYD D+EV G++D+L+ AW+ K YE +LN
Sbjct: 1002 EKILGRLYRSIQEASSGDLVPEETCTLNDLPYDADMEVPGATDFLSSAWECKCSYETQLN 1061
Query: 738 ALLAQYRVSSEGEVVTGHIWSLPKFNSRKQGELKERLKNAYSSLHKEHRHAFDTMAPDFL 559
ALL QY V +E E+VT HIWSLPK++SRKQG++KERLKNAYS+LHK+ R F++ D
Sbjct: 1062 ALLNQYGVRTEAELVTEHIWSLPKYSSRKQGDIKERLKNAYSALHKDFRSIFESFVTDQT 1121
Query: 558 QLTDAEKGVLYERKASAWYQVTYHPQLVKKSLELNEPDLDLVPARLSFAWIAADYLVRIK 379
+++D EK YE KASAWYQVTYHP+ V+KS E+ +PD + +PARLSFAWI ++L RIK
Sbjct: 1122 EISDDEKIRFYEMKASAWYQVTYHPKWVQKSREMLKPDFEDMPARLSFAWIGVEHLARIK 1181
Query: 378 IRCGDERRKLNSQRPIDSLASYLS 307
IRC E K++S+RP++ LA+Y+S
Sbjct: 1182 IRCHGE-VKVDSRRPVERLAAYIS 1204
>ref|XP_006483356.1| PREDICTED: RNA-dependent RNA polymerase 6-like isoform X1 [Citrus
sinensis] gi|568859664|ref|XP_006483357.1| PREDICTED:
RNA-dependent RNA polymerase 6-like isoform X2 [Citrus
sinensis]
Length = 1197
Score = 1080 bits (2793), Expect = 0.0
Identities = 545/812 (67%), Positives = 641/812 (78%), Gaps = 5/812 (0%)
Frame = -3
Query: 2718 LVQDWLLKDRKLLRQPS--NETVEVRRLAITPTKAYCLPAEVELSNRVLRKYKEVADRFL 2545
LVQ+WLLKD +L + P ++ VEVRRL ITPTKAYCLP EVELSNRVLRKYK++ADRFL
Sbjct: 389 LVQEWLLKDPELYKGPKQIDDIVEVRRLVITPTKAYCLPPEVELSNRVLRKYKDLADRFL 448
Query: 2544 RVTFMDEGMXXXXXXXXXXXVAPIVRDITFSSFPQKTTAFRRVNQILTNGFQLCGRKYSF 2365
RVTFMDEG+ +APIVRDIT +SF QKT F+RV IL+ GF LCGRK+SF
Sbjct: 449 RVTFMDEGLQTMNANVLSYFIAPIVRDITLNSFSQKTRVFKRVRSILSGGFYLCGRKFSF 508
Query: 2364 LAFSSNQLRDRSAWFFAEVVNTITVSNIRNWMGKFSNRNVAKCTARMGQCFSSTYATINV 2185
LAFSS+QLRD SAWFF+E T +V +I+ WMG+F+++N+AKC ARMGQCFSSTYAT+ V
Sbjct: 509 LAFSSSQLRDCSAWFFSEDGKT-SVLDIKKWMGRFTDKNIAKCAARMGQCFSSTYATVEV 567
Query: 2184 PPNEVNPDLEDIVRNEYVFSDGIGKITPDLALEVAEKLQLTDNPPS-AYQIRYAGCKGVV 2008
PP EV+P+L DI RN YVFSDGIGKITPDLA+EVA+KL+L NPP AYQIRYAGCKGVV
Sbjct: 568 PPTEVDPELPDIKRNGYVFSDGIGKITPDLAMEVAQKLKLDVNPPPCAYQIRYAGCKGVV 627
Query: 2007 AVWLGNGDGIRLSLRPSMNKFESNHTMLEVVSWTKIQPGFLNRQIITLLSSQQVPDSVFE 1828
A W GDGIR+SLR SMNKF+S+HT LE+ SWT+ QPGFLNRQIITLLS+ VPD +F
Sbjct: 628 ACWPAKGDGIRMSLRESMNKFQSHHTTLEICSWTRFQPGFLNRQIITLLSTLNVPDEMFW 687
Query: 1827 RMQETMIHKLNQMLVDADVAYEVLTTSCTEQSSTAAMMLSAGFRPQTEPHLKAMISCVRS 1648
MQ++M+ KLNQMLVD+DVA+EVLT +C EQ +TAA+MLSAGF PQTEPHL+ M++C+R+
Sbjct: 688 SMQDSMLSKLNQMLVDSDVAFEVLTAACAEQGNTAAIMLSAGFNPQTEPHLRGMLTCIRA 747
Query: 1647 SQLGDLLAKTRIFVSKARWLMGCLDELGVLEQGQCFIQTSSLSLENCFSKHGSRFSAPQK 1468
+QL L K RIFV RWLMGCLDELGVLE GQCFIQ S L NCFSKHGSRF A K
Sbjct: 748 AQLWGLREKARIFVPAGRWLMGCLDELGVLEGGQCFIQVSEPFLGNCFSKHGSRF-AETK 806
Query: 1467 NRQVIVGTVAMAKNPCLHPGDIRILEAVDVPSLHHLSDCLVFPQKGDRPHTNEASGSDLD 1288
QVI G V +AKNPCLHPGDIRILEAVD P LHHL DCLVFPQKGDRPHTNEASGSDLD
Sbjct: 807 KLQVIKGFVVIAKNPCLHPGDIRILEAVDHPELHHLYDCLVFPQKGDRPHTNEASGSDLD 866
Query: 1287 GDLYFVTWDQDLIPPSKKSSIAMDYTPAEVRNLPRQIFPQDIIDFYLKNMINENLGVICN 1108
GDLYFVTWD++LIPPSKKS M+Y AE + L R + +DII+F+ K+M+NENLG ICN
Sbjct: 867 GDLYFVTWDENLIPPSKKSWPPMEYNAAEAKTLTRPVDQRDIIEFFAKHMVNENLGTICN 926
Query: 1107 AHVVHADRSEYGAFDENCLKLAELAAIAVDFPKTGKMVTLPPTLKPKCYPDFMGKDGYIS 928
AHVVHAD SEYGA DENC+ LAELAA AVDFPKTGK+VT+P LKPK YPDFMGK+ Y S
Sbjct: 927 AHVVHADHSEYGALDENCILLAELAATAVDFPKTGKIVTMPAHLKPKLYPDFMGKEAYQS 986
Query: 927 YKSEKVLGKLYRKIKDVTD-DID-SSETACMVEDLPYDVDLEVVGSSDYLADAWQDKVVY 754
YKS K+LG+LYR+ KD D DI SSE D+ YD DLEV S D++ADAW K Y
Sbjct: 987 YKSNKILGRLYRQSKDAYDEDISVSSEVDINPVDIHYDTDLEVPESVDFIADAWNQKCSY 1046
Query: 753 ERRLNALLAQYRVSSEGEVVTGHIWSLPKFNSRKQGELKERLKNAYSSLHKEHRHAFDTM 574
+ +LN LL QY+V+ E E+VTGHIWS+PK+NSRKQGELKERLK++YS+L KE R F+ M
Sbjct: 1047 DGQLNGLLEQYKVNREEELVTGHIWSMPKYNSRKQGELKERLKHSYSALRKEFRQVFEKM 1106
Query: 573 APDFLQLTDAEKGVLYERKASAWYQVTYHPQLVKKSLELNEPDLDLVPARLSFAWIAADY 394
D L++ EK L+ERKASAWYQVTYHP+ VKKSL+L E D LSFAWIA DY
Sbjct: 1107 DSDCELLSEDEKNALFERKASAWYQVTYHPEWVKKSLDLQEQDSARSVVLLSFAWIANDY 1166
Query: 393 LVRIKIRCGDERRKLNSQRPIDSLASYLSERI 298
L RIKIRC E +++ +P++ LA Y+++RI
Sbjct: 1167 LARIKIRC-REMANIDTSKPVNYLARYVADRI 1197
>gb|ACO72600.1| RNA-dependent RNA polymerase 6 [Nicotiana glutinosa]
Length = 1197
Score = 1076 bits (2783), Expect = 0.0
Identities = 543/813 (66%), Positives = 640/813 (78%), Gaps = 7/813 (0%)
Frame = -3
Query: 2715 VQDWLLKDRKLLRQPS--NETVEVRRLAITPTKAYCLPAEVELSNRVLRKYKEVADRFLR 2542
+Q WLLK+ KLL + ++ VEVRRL ITPTKAYCLP VELSNRVLR YK VADRFLR
Sbjct: 390 IQKWLLKNPKLLERTGELDDIVEVRRLVITPTKAYCLPPTVELSNRVLRNYKHVADRFLR 449
Query: 2541 VTFMDEGMXXXXXXXXXXXVAPIVRDITFSSFPQKTTAFRRVNQILTNGFQLCGRKYSFL 2362
VTFMDEGM A IVR+IT +S PQ+T F+RV IL+ GF LCGRKYSFL
Sbjct: 450 VTFMDEGMRNLNRNVLTYYAATIVREITSNSNPQRTAIFQRVKSILSKGFHLCGRKYSFL 509
Query: 2361 AFSSNQLRDRSAWFFAEVVNTITVSNIRNWMGKFSNRNVAKCTARMGQCFSSTYATINVP 2182
AFS+NQLRDRSAWFFAE I V I +WMG+FSNRNVAKC ARMGQCFSSTYAT+ VP
Sbjct: 510 AFSANQLRDRSAWFFAEDPK-IRVPGIISWMGRFSNRNVAKCAARMGQCFSSTYATVEVP 568
Query: 2181 PNEVNPDLEDIVRNEYVFSDGIGKITPDLALEVAEKLQLTDNPPSAYQIRYAGCKGVVAV 2002
+EVN +L DI RN YVFSDGIG I+ DLA+EVAEKL L+ NPP+AYQIRYAGCKGVVA
Sbjct: 569 SSEVNSELPDIERNGYVFSDGIGMISADLAIEVAEKLHLSVNPPAAYQIRYAGCKGVVAC 628
Query: 2001 WLGNGDGIRLSLRPSMNKFESNHTMLEVVSWTKIQPGFLNRQIITLLSSQQVPDSVFERM 1822
W DGIRLSLRPSM KF+SNHT+LE+ SWT+ QPGFLNRQI+TLLSS V D +F M
Sbjct: 629 WPTKNDGIRLSLRPSMKKFDSNHTILEICSWTRFQPGFLNRQIVTLLSSLDVKDGIFWEM 688
Query: 1821 QETMIHKLNQMLVDADVAYEVLTTSCTEQSSTAAMMLSAGFRPQTEPHLKAMISCVRSSQ 1642
Q+ MI L++MLVD+DVA++V+T SC E +TAA+MLSAGF+PQ+EPHL+ M+S +R+SQ
Sbjct: 689 QKEMIAGLDKMLVDSDVAFDVITASCAEAGNTAALMLSAGFKPQSEPHLRGMLSSIRASQ 748
Query: 1641 LGDLLAKTRIFVSKARWLMGCLDELGVLEQGQCFIQTSSLSLENCFSKHGSRFSAPQKNR 1462
LGDL K RIFV RWLMGCLDELG LEQGQCFIQ SS SLENCF KHGS+FS +KN
Sbjct: 749 LGDLRNKARIFVPSGRWLMGCLDELGELEQGQCFIQVSSPSLENCFVKHGSKFSDIKKNL 808
Query: 1461 QVIVGTVAMAKNPCLHPGDIRILEAVDVPSLHHLSDCLVFPQKGDRPHTNEASGSDLDGD 1282
QV+ G V +AKNPCLHPGD+RILEAVDVPSL HL DCLVFPQKGDRPH+NEASGSDLDGD
Sbjct: 809 QVVKGLVVIAKNPCLHPGDVRILEAVDVPSLSHLYDCLVFPQKGDRPHSNEASGSDLDGD 868
Query: 1281 LYFVTWDQDLIPPSKKSSIAMDYTPAEVRNLPRQIFPQDIIDFYLKNMINENLGVICNAH 1102
LYFVTWD+++IPPSKKS I M+Y PAEV+ L RQ+ DIIDF+ KNM+ E+LG ICNAH
Sbjct: 869 LYFVTWDENIIPPSKKSWIPMNYEPAEVKQLGRQVNHMDIIDFFSKNMVQESLGEICNAH 928
Query: 1101 VVHADRSEYGAFDENCLKLAELAAIAVDFPKTGKMVTLPPTLKPKCYPDFMGKDGYISYK 922
VVHAD SE+GA DE CLKLAELAA+AVDFPKTGK+VT+P LKPK YPDFMGK+ + SYK
Sbjct: 929 VVHADLSEFGALDEKCLKLAELAALAVDFPKTGKLVTMPFDLKPKMYPDFMGKEEFQSYK 988
Query: 921 SEKVLGKLYRKIKDVTDDID--SSETACMVEDLPYDVDLEVVGSSDYLADAWQDKVVYER 748
S+K+LGKLYR++KDV D S+ + +D+PYD LE++GS+ ++ DAW K Y+
Sbjct: 989 SKKILGKLYRQVKDVCDAEGEVSAGLEVVPKDIPYDTTLEILGSTTFIDDAWNSKCSYDG 1048
Query: 747 RLNALLAQYRVSSEGEVVTGHIWSLPKFNSRKQGELKERLKNAYSSLHKEHRHAFDTMAP 568
+LN LL QY+V+ E EVVTGHIWS+PK++++KQGELKERLK+AY++L KE R+ F+ M P
Sbjct: 1049 QLNGLLGQYKVNREEEVVTGHIWSMPKYSAKKQGELKERLKHAYNTLRKEFRNVFERMEP 1108
Query: 567 DFLQLTDAEKGVLYERKASAWYQVTYHPQLVKKSLELNEPDLDLVPARLSFAWIAADYLV 388
DF L D EK +YERKASAWYQVTYHP V +SLEL PD LSFAWIAADYL
Sbjct: 1109 DFDLLPDDEKNDMYERKASAWYQVTYHPHWVARSLELQIPDAVSSTVMLSFAWIAADYLA 1168
Query: 387 RIKIRCGDERRKL---NSQRPIDSLASYLSERI 298
RIKIR R L +S +PI+SL YL+++I
Sbjct: 1169 RIKIR----HRGLPYSDSTKPINSLGRYLADKI 1197
>sp|Q8LHH9.1|SHL2_ORYSJ RecName: Full=Probable RNA-dependent RNA polymerase SHL2; AltName:
Full=Protein SHOOTLESS 2 gi|21328146|dbj|BAC00725.1|
putative RNA-dependent RNA polymerase [Oryza sativa
Japonica Group] gi|157279691|dbj|BAF80151.1| SHOOTLESS2
[Oryza sativa Japonica Group]
Length = 1218
Score = 1076 bits (2782), Expect = 0.0
Identities = 531/796 (66%), Positives = 632/796 (79%)
Frame = -3
Query: 2685 LLRQPSNETVEVRRLAITPTKAYCLPAEVELSNRVLRKYKEVADRFLRVTFMDEGMXXXX 2506
L + ++ EVRRL ITPT+AYCLP EVE SNRVLR Y EVADRFLRVTFMDEGM
Sbjct: 425 LCSKVGDDHAEVRRLVITPTRAYCLPPEVERSNRVLRHYHEVADRFLRVTFMDEGMQVLN 484
Query: 2505 XXXXXXXVAPIVRDITFSSFPQKTTAFRRVNQILTNGFQLCGRKYSFLAFSSNQLRDRSA 2326
APIV+D+ + F QKTT ++RV +LT GF +CGRKYSFLAFSSNQLRD+SA
Sbjct: 485 NNVLNSFTAPIVKDLMSNFFQQKTTVYKRVRMLLTEGFHMCGRKYSFLAFSSNQLRDKSA 544
Query: 2325 WFFAEVVNTITVSNIRNWMGKFSNRNVAKCTARMGQCFSSTYATINVPPNEVNPDLEDIV 2146
WFFAE T TV IR WMG+F+++NVAK ARMGQCFSSTYAT+ + P+EV+ +D+V
Sbjct: 545 WFFAEDRKT-TVEAIRKWMGRFTSKNVAKHAARMGQCFSSTYATVTMRPDEVDESFDDVV 603
Query: 2145 RNEYVFSDGIGKITPDLALEVAEKLQLTDNPPSAYQIRYAGCKGVVAVWLGNGDGIRLSL 1966
NEY+FSDGIGKITPDLALEVAE+LQLTDNPPSAYQIR+AG KGV+AVW G+GDG RL L
Sbjct: 604 HNEYIFSDGIGKITPDLALEVAERLQLTDNPPSAYQIRFAGFKGVIAVWQGHGDGTRLFL 663
Query: 1965 RPSMNKFESNHTMLEVVSWTKIQPGFLNRQIITLLSSQQVPDSVFERMQETMIHKLNQML 1786
RPSM KFESNH +LEVVSWTK QPGFLNRQII LLSS VPDS+F +MQETM+ LN +L
Sbjct: 664 RPSMRKFESNHLVLEVVSWTKFQPGFLNRQIIILLSSLNVPDSIFWQMQETMLSNLNNIL 723
Query: 1785 VDADVAYEVLTTSCTEQSSTAAMMLSAGFRPQTEPHLKAMISCVRSSQLGDLLAKTRIFV 1606
D DVA+EVLTTSC + +TAA+MLSAGF P+TEPHLKAM+ +RS+QL DLL K RIFV
Sbjct: 724 SDRDVAFEVLTTSCADDGNTAALMLSAGFEPRTEPHLKAMLLAIRSAQLQDLLEKARIFV 783
Query: 1605 SKARWLMGCLDELGVLEQGQCFIQTSSLSLENCFSKHGSRFSAPQKNRQVIVGTVAMAKN 1426
K RWLMGCLDELGVLEQGQCFI+ + SL + F KHGSRFS+ KN +VI+GTV +AKN
Sbjct: 784 PKGRWLMGCLDELGVLEQGQCFIRATVPSLNSYFVKHGSRFSSTDKNTEVILGTVVIAKN 843
Query: 1425 PCLHPGDIRILEAVDVPSLHHLSDCLVFPQKGDRPHTNEASGSDLDGDLYFVTWDQDLIP 1246
PCLHPGD+RILEAVDVP LHHL DCLVFPQKG+RPH NEASGSDLDGDLYFVTWD+ LIP
Sbjct: 844 PCLHPGDVRILEAVDVPELHHLVDCLVFPQKGERPHANEASGSDLDGDLYFVTWDEKLIP 903
Query: 1245 PSKKSSIAMDYTPAEVRNLPRQIFPQDIIDFYLKNMINENLGVICNAHVVHADRSEYGAF 1066
P KKS MDY+P E + LPRQ+ DIIDF+LKNMI+ENLG ICNAHVVHAD SEYGA
Sbjct: 904 PGKKSWNPMDYSPPEAKQLPRQVSQHDIIDFFLKNMISENLGRICNAHVVHADLSEYGAM 963
Query: 1065 DENCLKLAELAAIAVDFPKTGKMVTLPPTLKPKCYPDFMGKDGYISYKSEKVLGKLYRKI 886
DE C+ LAELAA AVDFPKTGK+ +PP LKPK YPDFMGK+ SYKSEK+LG+LYR I
Sbjct: 964 DEKCIHLAELAATAVDFPKTGKLAIMPPHLKPKVYPDFMGKEDGQSYKSEKILGRLYRSI 1023
Query: 885 KDVTDDIDSSETACMVEDLPYDVDLEVVGSSDYLADAWQDKVVYERRLNALLAQYRVSSE 706
++ ++ S+ C DLPYD+DLEV G+SD+LA AWQ K Y+ +L+ALL+QYRV +E
Sbjct: 1024 QEASNGDVVSQEVCTPNDLPYDIDLEVPGASDFLASAWQCKCSYDAQLSALLSQYRVRTE 1083
Query: 705 GEVVTGHIWSLPKFNSRKQGELKERLKNAYSSLHKEHRHAFDTMAPDFLQLTDAEKGVLY 526
E+VTGHI L K +S+KQG++K+RLK AYS+L KE + F+++A D ++ D EK +LY
Sbjct: 1084 AELVTGHITFLVKNSSKKQGDIKDRLKTAYSALRKEFKSTFESIASDQCEIGDDEKNLLY 1143
Query: 525 ERKASAWYQVTYHPQLVKKSLELNEPDLDLVPARLSFAWIAADYLVRIKIRCGDERRKLN 346
E KASAWYQVTYHP+ V+KS + PD + +PA LSFAWI DYL RIK+RC + R +
Sbjct: 1144 EMKASAWYQVTYHPKWVEKSRGILGPDGEEIPASLSFAWIPVDYLARIKLRCHGKVR-VE 1202
Query: 345 SQRPIDSLASYLSERI 298
Q+P++ LA+Y+SERI
Sbjct: 1203 GQKPVERLAAYISERI 1218
>ref|XP_003561343.1| PREDICTED: probable RNA-dependent RNA polymerase SHL2-like
[Brachypodium distachyon]
Length = 1208
Score = 1075 bits (2779), Expect = 0.0
Identities = 535/799 (66%), Positives = 635/799 (79%), Gaps = 2/799 (0%)
Frame = -3
Query: 2688 KLLR--QPSNETVEVRRLAITPTKAYCLPAEVELSNRVLRKYKEVADRFLRVTFMDEGMX 2515
KLLR + ++ VEVRRL ITPT A CLP ++ELSNRVLR Y EVADRFLRVTFMDEGM
Sbjct: 414 KLLRSGKVGDDNVEVRRLVITPTSASCLPPQIELSNRVLRHYHEVADRFLRVTFMDEGMQ 473
Query: 2514 XXXXXXXXXXVAPIVRDITFSSFPQKTTAFRRVNQILTNGFQLCGRKYSFLAFSSNQLRD 2335
APIV+ + +SF QKT ++RV LT GF +CGRKYSFLAFSSNQLRD
Sbjct: 474 SLNNNVLNFYTAPIVKALRPNSFQQKTAVYKRVKMFLTEGFHMCGRKYSFLAFSSNQLRD 533
Query: 2334 RSAWFFAEVVNTITVSNIRNWMGKFSNRNVAKCTARMGQCFSSTYATINVPPNEVNPDLE 2155
RSAWFFAE T TV +IR WMG+F+++NVAK ARMGQCFSSTYAT+ V P+EVN LE
Sbjct: 534 RSAWFFAEDSKT-TVESIRKWMGRFTSKNVAKHAARMGQCFSSTYATVMVKPDEVNESLE 592
Query: 2154 DIVRNEYVFSDGIGKITPDLALEVAEKLQLTDNPPSAYQIRYAGCKGVVAVWLGNGDGIR 1975
D+ RN Y FSDGIGKITPDLA+EVAEKLQL D+PPSAYQIRYAG KGV+AVW GN +GIR
Sbjct: 593 DVERNNYTFSDGIGKITPDLAMEVAEKLQLMDSPPSAYQIRYAGYKGVIAVWQGNNNGIR 652
Query: 1974 LSLRPSMNKFESNHTMLEVVSWTKIQPGFLNRQIITLLSSQQVPDSVFERMQETMIHKLN 1795
LSLRPSM KFES H++LEVVSWT+ QPGFLNRQII LLSS V D +F +MQE+M+ LN
Sbjct: 653 LSLRPSMKKFESKHSVLEVVSWTRFQPGFLNRQIILLLSSLNVSDDIFSQMQESMLFNLN 712
Query: 1794 QMLVDADVAYEVLTTSCTEQSSTAAMMLSAGFRPQTEPHLKAMISCVRSSQLGDLLAKTR 1615
++L+D+DVA+EV+TTSC EQ +TAA+MLSAGF P TEPHL+ M+ +RS+QL DLL KTR
Sbjct: 713 KILLDSDVAFEVVTTSCAEQGNTAALMLSAGFGPGTEPHLRGMLLAIRSAQLQDLLEKTR 772
Query: 1614 IFVSKARWLMGCLDELGVLEQGQCFIQTSSLSLENCFSKHGSRFSAPQKNRQVIVGTVAM 1435
IFV K RWLMGCLDELGVLEQGQCF+Q S+ SL+ CF KHGSRFSA KN +IVGTV +
Sbjct: 773 IFVPKGRWLMGCLDELGVLEQGQCFVQASAASLDRCFLKHGSRFSA-NKNTDIIVGTVVI 831
Query: 1434 AKNPCLHPGDIRILEAVDVPSLHHLSDCLVFPQKGDRPHTNEASGSDLDGDLYFVTWDQD 1255
AKNPCLHPGD+RILEAVDVP LHHL DCLVFPQKG+RPH NEASGSDLDGDLYFVTWD+
Sbjct: 832 AKNPCLHPGDVRILEAVDVPELHHLVDCLVFPQKGERPHPNEASGSDLDGDLYFVTWDEK 891
Query: 1254 LIPPSKKSSIAMDYTPAEVRNLPRQIFPQDIIDFYLKNMINENLGVICNAHVVHADRSEY 1075
L+PP KKS MDY+PAE + RQ+ DI+DF+LKNM+NENLG ICNAHVVHAD SEY
Sbjct: 892 LVPPGKKSWNPMDYSPAEAKQQQRQVSQHDIVDFFLKNMVNENLGPICNAHVVHADLSEY 951
Query: 1074 GAFDENCLKLAELAAIAVDFPKTGKMVTLPPTLKPKCYPDFMGKDGYISYKSEKVLGKLY 895
GA DE C++LAELAA AVDFPKTGK+VT+PP L+PK YPDFM K+ SYKSEK+LG+LY
Sbjct: 952 GAMDEKCIRLAELAATAVDFPKTGKLVTMPPELRPKIYPDFMLKEESRSYKSEKILGRLY 1011
Query: 894 RKIKDVTDDIDSSETACMVEDLPYDVDLEVVGSSDYLADAWQDKVVYERRLNALLAQYRV 715
R I++ + SE AC + DL YD DLEV G+S +L AW+ K YE +LN LL Q RV
Sbjct: 1012 RSIQEASGGDLVSEEACTLNDLLYDTDLEVPGASRFLTSAWECKCNYEGQLNVLLNQSRV 1071
Query: 714 SSEGEVVTGHIWSLPKFNSRKQGELKERLKNAYSSLHKEHRHAFDTMAPDFLQLTDAEKG 535
+E E+VTGH+WSLPK+NSRKQGE++ER+KNAY++L KE+R F+++ D Q+TD EK
Sbjct: 1072 CTEAELVTGHVWSLPKYNSRKQGEIRERIKNAYAALQKEYRSVFESLT-DQCQITDDEKN 1130
Query: 534 VLYERKASAWYQVTYHPQLVKKSLELNEPDLDLVPARLSFAWIAADYLVRIKIRCGDERR 355
+LYERKASAWYQVTYHP+ V+K + + D + PARLSFAWIA DYLVRIK+R
Sbjct: 1131 LLYERKASAWYQVTYHPKWVEKLRAMLDEDGEERPARLSFAWIAVDYLVRIKLR-SHGGV 1189
Query: 354 KLNSQRPIDSLASYLSERI 298
K ++P++ LA+Y+SERI
Sbjct: 1190 KAEGRKPVERLAAYISERI 1208
>gb|EMJ26639.1| hypothetical protein PRUPE_ppa000422mg [Prunus persica]
Length = 1196
Score = 1074 bits (2778), Expect = 0.0
Identities = 542/813 (66%), Positives = 641/813 (78%), Gaps = 6/813 (0%)
Frame = -3
Query: 2718 LVQDWLLKDRKLLRQPS--NETVEVRRLAITPTKAYCLPAEVELSNRVLRKYKEVADRFL 2545
+VQDWLLK+ KL++ P ++ EVRRL ITPTKAYCLP EVELSNRVLRKYKEVADRFL
Sbjct: 388 VVQDWLLKNPKLVKDPKRLDDIAEVRRLVITPTKAYCLPPEVELSNRVLRKYKEVADRFL 447
Query: 2544 RVTFMDEGMXXXXXXXXXXXVAPIVRDITFSSFPQKTTAFRRVNQILTNGFQLCGRKYSF 2365
RVTFMDEGM VAPIV++IT +SF QKT F+R IL +GF LCGRKY+F
Sbjct: 448 RVTFMDEGMQKINSNVLNYYVAPIVKEITSNSFLQKTNVFKRFRTILNDGFYLCGRKYTF 507
Query: 2364 LAFSSNQLRDRSAWFFAEVVNTITVSNIRNWMGKFSNRNVAKCTARMGQCFSSTYATINV 2185
LAFSSNQLRDRSAWFFAE VN I+V I +WMGKF+N+NVAKC ARMGQCFSSTYAT+ V
Sbjct: 508 LAFSSNQLRDRSAWFFAECVN-ISVGKITSWMGKFNNKNVAKCAARMGQCFSSTYATVEV 566
Query: 2184 PPNEVNPDLEDIVRNEYVFSDGIGKITPDLALEVAEKLQLTDNPPSAYQIRYAGCKGVVA 2005
+EVN D+ DI RN YVFSDGIG ITPDLALEVAEKL+L NPP AYQIR+AGCKGVVA
Sbjct: 567 TSSEVN-DIPDIKRNGYVFSDGIGMITPDLALEVAEKLKLDRNPPCAYQIRFAGCKGVVA 625
Query: 2004 VWLGNGDGIRLSLRPSMNKFESNHTMLEVVSWTKIQPGFLNRQIITLLSSQQVPDSVFER 1825
W GDG RLSLR SMNKFES HT LE+ SWT+ QPGFLNRQIITLLS+ V D +F R
Sbjct: 626 CWPSKGDGFRLSLRTSMNKFESKHTTLEICSWTRYQPGFLNRQIITLLSTLNVEDEIFWR 685
Query: 1824 MQETMIHKLNQMLVDADVAYEVLTTSCTEQSSTAAMMLSAGFRPQTEPHLKAMISCVRSS 1645
MQE M+ KLNQMLVD DVA++VLT SC EQ + AA+MLSAGF+PQTEPHL+ M++C++++
Sbjct: 686 MQEKMVLKLNQMLVDTDVAFDVLTASCAEQGNAAAIMLSAGFKPQTEPHLRGMLTCIQAA 745
Query: 1644 QLGDLLAKTRIFVSKARWLMGCLDELGVLEQGQCFIQTSSLSLENCFSKHGSRFSAPQKN 1465
QL L K RIFV RWLMG LDELGVLEQGQCF+Q S+ LE+CF+KHGS F+ ++N
Sbjct: 746 QLWGLREKARIFVHSGRWLMGVLDELGVLEQGQCFVQVSTPLLESCFAKHGSSFAQIERN 805
Query: 1464 RQVIVGTVAMAKNPCLHPGDIRILEAVDVPSLHHLSDCLVFPQKGDRPHTNEASGSDLDG 1285
QVI G V +AKNPCLHPGDIRILEAVD P LHHL DCLVFPQKGDRPHT+EASGSDLDG
Sbjct: 806 LQVIKGHVVIAKNPCLHPGDIRILEAVDAPGLHHLYDCLVFPQKGDRPHTDEASGSDLDG 865
Query: 1284 DLYFVTWDQDLIPPSKKSSIAMDYTPAEVRNLPRQIFPQDIIDFYLKNMINENLGVICNA 1105
DLYFVTWD++LIPPSKKS + M Y PAE + R + QDIIDF++KNM NENLG ICNA
Sbjct: 866 DLYFVTWDENLIPPSKKSWMPMQYDPAEAKLQGRPVTQQDIIDFFVKNMTNENLGPICNA 925
Query: 1104 HVVHADRSEYGAFDENCLKLAELAAIAVDFPKTGKMVTLPPTLKPKCYPDFMGKDGYISY 925
HVVHADRS+YGA D NCLKLAELAA+AVDFPKTGK+V+LP LKP+ YPDF+GK+ SY
Sbjct: 926 HVVHADRSDYGALDVNCLKLAELAALAVDFPKTGKIVSLPQHLKPRLYPDFLGKEDNQSY 985
Query: 924 KSEKVLGKLYRKIKDVTDD--IDSSETACMVEDLPYDVDLEVVGSSDYLADAWQDKVVYE 751
KS K+LG+LYRK++D D+ SSE D+PYD+DLEV G++D++ DAW+ K Y+
Sbjct: 986 KSTKILGRLYRKVRDAYDEDAATSSELHYFPSDIPYDMDLEVPGAADFVFDAWEKKCSYD 1045
Query: 750 RRLNALLAQYRVSSEGEVVTGHIWSLPKFNSRKQGELKERLKNAYSSLHKEHRHAFDTMA 571
+L L+ QY+V E E+VTGH+WS+PK NS+KQGELKERL ++Y++L KE R F+ +
Sbjct: 1046 GQLKGLMGQYKVKREEEIVTGHVWSIPKSNSKKQGELKERLSHSYNALKKEFRQMFENLD 1105
Query: 570 PDFLQLTDAEKGVLYERKASAWYQVTYHPQLVKKSLELNEPD-LDLVPARLSFAWIAADY 394
+ LTD EK +L E+KASAWYQVTYHP+ VK+S L EPD V LSFAWIAADY
Sbjct: 1106 SNLEALTDDEKNLLCEKKASAWYQVTYHPKWVKQSPPLQEPDGPGDVVVMLSFAWIAADY 1165
Query: 393 LVRIKIRC-GDERRKLNSQRPIDSLASYLSERI 298
L RIKI+C G E ++S +PI+SL YL++RI
Sbjct: 1166 LARIKIKCHGVEH--IDSTKPINSLKRYLADRI 1196
>emb|CBI21038.3| unnamed protein product [Vitis vinifera]
Length = 1035
Score = 1073 bits (2774), Expect = 0.0
Identities = 553/813 (68%), Positives = 638/813 (78%), Gaps = 6/813 (0%)
Frame = -3
Query: 2718 LVQDWLLKDRKLLRQPS--NETVEVRRLAITPTKAYCLPAEVELSNRVLRKYKEVADRFL 2545
LV WLLK+ KLL+ P ++ VEVRRL ITP+KAYCLP EVELSNRVLR YKEV+DRFL
Sbjct: 229 LVHKWLLKNPKLLKSPKELDDIVEVRRLVITPSKAYCLPPEVELSNRVLRNYKEVSDRFL 288
Query: 2544 RVTFMDEGMXXXXXXXXXXXVAPIVRDITFSSFPQKTTAFRRVNQILTNGFQLCGRKYSF 2365
RVTFMDEGM VAPIV+ IT +SFPQKT F+RV ILT+GF LCGRKYSF
Sbjct: 289 RVTFMDEGMQTINANVLNYYVAPIVKVITSNSFPQKTRVFKRVKTILTDGFYLCGRKYSF 348
Query: 2364 LAFSSNQLRDRSAWFFAEVVNTITVSNIRNWMGKFSNRNVAKCTARMGQCFSSTYATINV 2185
LAFSSNQLRDRSAWFFAE T +V I++WMGKF+NRNVAKC ARMGQCFSSTYAT+ V
Sbjct: 349 LAFSSNQLRDRSAWFFAEDKKT-SVRAIKSWMGKFTNRNVAKCAARMGQCFSSTYATVEV 407
Query: 2184 PPNEVNPDLEDIVRNEYVFSDGIGKITPDLALEVAEKLQLTDNPPSAYQIRYAGCKGVVA 2005
P EV +L DI RN Y FSDGIGKI PDLA+EVAEKL+L + PSAYQIRYAGCKGVVA
Sbjct: 408 PSWEVK-ELPDIKRNGYDFSDGIGKIVPDLAMEVAEKLKL-EGTPSAYQIRYAGCKGVVA 465
Query: 2004 VWLGNGDGIRLSLRPSMNKFESNHTMLEVVSWTKIQPGFLNRQIITLLSSQQVPDSVFER 1825
W + DGIRLS RPSMNKF S+HT+LE+ SWT+ QPGFLNRQI+TLLS+ VPD +F +
Sbjct: 466 CWPSDNDGIRLSWRPSMNKFLSDHTILEICSWTRFQPGFLNRQIVTLLSALNVPDKIFWK 525
Query: 1824 MQETMIHKLNQMLVDADVAYEVLTTSCTEQSSTAAMMLSAGFRPQTEPHLKAMISCVRSS 1645
MQE+MI KLNQML D DVA++VL SC EQ +TAA+MLSAGF+PQTEPHL+ M++C+R++
Sbjct: 526 MQESMISKLNQMLTDTDVAFDVLIASCAEQGNTAAIMLSAGFKPQTEPHLQGMLTCIRAA 585
Query: 1644 QLGDLLAKTRIFVSKARWLMGCLDELGVLEQGQCFIQTSSLSLENCFSKHGSRFSAPQKN 1465
Q L K RIFV RWLMGCLDELGVLEQGQCFIQ SS SLENCF KHGSRFSA QKN
Sbjct: 586 QFWGLREKARIFVPSGRWLMGCLDELGVLEQGQCFIQVSSPSLENCFLKHGSRFSA-QKN 644
Query: 1464 RQVIVGTVAMAKNPCLHPGDIRILEAVDVPSLHHLSDCLVFPQKGDRPHTNEASGSDLDG 1285
+VI G VA+AKNPCLHPGD+RILEAVD P L HL DCLVFPQKGDRPH+NEASGSDLDG
Sbjct: 645 LKVIKGIVAIAKNPCLHPGDVRILEAVDAPGLEHLVDCLVFPQKGDRPHSNEASGSDLDG 704
Query: 1284 DLYFVTWDQDLIPPSKKSSIAMDYTPAEVRNLPRQIFPQDIIDFYLKNMINENLGVICNA 1105
DLYFVTW++ LIPPSK+S M Y AE + L R++ DIIDF+ KNM+NENLG ICNA
Sbjct: 705 DLYFVTWEETLIPPSKQSWPPMQYDSAEAKALAREVTSLDIIDFFTKNMVNENLGAICNA 764
Query: 1104 HVVHADRSEYGAFDENCLKLAELAAIAVDFPKTGKMVTLPPTLKPKCYPDFMGKDGYISY 925
HVVHADRSEYGA DE CL LAE AA AVDFPKTGK+VTLPP LKPK YPDFMGK+ + +Y
Sbjct: 765 HVVHADRSEYGALDEACLDLAERAATAVDFPKTGKLVTLPPYLKPKMYPDFMGKEEFQTY 824
Query: 924 KSEKVLGKLYRKIKDV--TDDIDSSETACMVEDLPYDVDLEVVGSSDYLADAWQDKVVYE 751
+S K+LGK+YR+IKD D +SSE + +P+D DL + GS+D++ DAW K Y+
Sbjct: 825 RSNKILGKMYRQIKDAYNEDVSESSEQIFGADKVPFDEDLGIPGSADFINDAWIHKCSYD 884
Query: 750 RRLNALLAQYRVSSEGEVVTGHIWSLPKFNSRKQGELKERLKNAYSSLHKEHRHAFDTMA 571
+LN LL QY+V E EVVTGH+WS+PK+ SRKQGEL ERLK+AYSSL KE R F+ M
Sbjct: 885 GQLNGLLGQYKVKREEEVVTGHVWSMPKYKSRKQGELTERLKHAYSSLKKEFRQIFEKMN 944
Query: 570 PDFLQLTDAEKGVLYERKASAWYQVTYHPQLVKKSLELNEPDLDLVPAR--LSFAWIAAD 397
DF QLTD EK LYE+KASAWYQVTYHP VKKSLEL PD ++ R LSFAWI AD
Sbjct: 945 SDFDQLTDDEKNRLYEQKASAWYQVTYHPTWVKKSLELQNPD-EVFGERVMLSFAWITAD 1003
Query: 396 YLVRIKIRCGDERRKLNSQRPIDSLASYLSERI 298
YL RIKIR ++S +PI+SLA +L +RI
Sbjct: 1004 YLARIKIR-RKGTGNVDSSKPINSLARFLVDRI 1035
>ref|XP_002282647.1| PREDICTED: RNA-dependent RNA polymerase 6 [Vitis vinifera]
Length = 1197
Score = 1073 bits (2774), Expect = 0.0
Identities = 553/813 (68%), Positives = 638/813 (78%), Gaps = 6/813 (0%)
Frame = -3
Query: 2718 LVQDWLLKDRKLLRQPS--NETVEVRRLAITPTKAYCLPAEVELSNRVLRKYKEVADRFL 2545
LV WLLK+ KLL+ P ++ VEVRRL ITP+KAYCLP EVELSNRVLR YKEV+DRFL
Sbjct: 391 LVHKWLLKNPKLLKSPKELDDIVEVRRLVITPSKAYCLPPEVELSNRVLRNYKEVSDRFL 450
Query: 2544 RVTFMDEGMXXXXXXXXXXXVAPIVRDITFSSFPQKTTAFRRVNQILTNGFQLCGRKYSF 2365
RVTFMDEGM VAPIV+ IT +SFPQKT F+RV ILT+GF LCGRKYSF
Sbjct: 451 RVTFMDEGMQTINANVLNYYVAPIVKVITSNSFPQKTRVFKRVKTILTDGFYLCGRKYSF 510
Query: 2364 LAFSSNQLRDRSAWFFAEVVNTITVSNIRNWMGKFSNRNVAKCTARMGQCFSSTYATINV 2185
LAFSSNQLRDRSAWFFAE T +V I++WMGKF+NRNVAKC ARMGQCFSSTYAT+ V
Sbjct: 511 LAFSSNQLRDRSAWFFAEDKKT-SVRAIKSWMGKFTNRNVAKCAARMGQCFSSTYATVEV 569
Query: 2184 PPNEVNPDLEDIVRNEYVFSDGIGKITPDLALEVAEKLQLTDNPPSAYQIRYAGCKGVVA 2005
P EV +L DI RN Y FSDGIGKI PDLA+EVAEKL+L + PSAYQIRYAGCKGVVA
Sbjct: 570 PSWEVK-ELPDIKRNGYDFSDGIGKIVPDLAMEVAEKLKL-EGTPSAYQIRYAGCKGVVA 627
Query: 2004 VWLGNGDGIRLSLRPSMNKFESNHTMLEVVSWTKIQPGFLNRQIITLLSSQQVPDSVFER 1825
W + DGIRLS RPSMNKF S+HT+LE+ SWT+ QPGFLNRQI+TLLS+ VPD +F +
Sbjct: 628 CWPSDNDGIRLSWRPSMNKFLSDHTILEICSWTRFQPGFLNRQIVTLLSALNVPDKIFWK 687
Query: 1824 MQETMIHKLNQMLVDADVAYEVLTTSCTEQSSTAAMMLSAGFRPQTEPHLKAMISCVRSS 1645
MQE+MI KLNQML D DVA++VL SC EQ +TAA+MLSAGF+PQTEPHL+ M++C+R++
Sbjct: 688 MQESMISKLNQMLTDTDVAFDVLIASCAEQGNTAAIMLSAGFKPQTEPHLQGMLTCIRAA 747
Query: 1644 QLGDLLAKTRIFVSKARWLMGCLDELGVLEQGQCFIQTSSLSLENCFSKHGSRFSAPQKN 1465
Q L K RIFV RWLMGCLDELGVLEQGQCFIQ SS SLENCF KHGSRFSA QKN
Sbjct: 748 QFWGLREKARIFVPSGRWLMGCLDELGVLEQGQCFIQVSSPSLENCFLKHGSRFSA-QKN 806
Query: 1464 RQVIVGTVAMAKNPCLHPGDIRILEAVDVPSLHHLSDCLVFPQKGDRPHTNEASGSDLDG 1285
+VI G VA+AKNPCLHPGD+RILEAVD P L HL DCLVFPQKGDRPH+NEASGSDLDG
Sbjct: 807 LKVIKGIVAIAKNPCLHPGDVRILEAVDAPGLEHLVDCLVFPQKGDRPHSNEASGSDLDG 866
Query: 1284 DLYFVTWDQDLIPPSKKSSIAMDYTPAEVRNLPRQIFPQDIIDFYLKNMINENLGVICNA 1105
DLYFVTW++ LIPPSK+S M Y AE + L R++ DIIDF+ KNM+NENLG ICNA
Sbjct: 867 DLYFVTWEETLIPPSKQSWPPMQYDSAEAKALAREVTSLDIIDFFTKNMVNENLGAICNA 926
Query: 1104 HVVHADRSEYGAFDENCLKLAELAAIAVDFPKTGKMVTLPPTLKPKCYPDFMGKDGYISY 925
HVVHADRSEYGA DE CL LAE AA AVDFPKTGK+VTLPP LKPK YPDFMGK+ + +Y
Sbjct: 927 HVVHADRSEYGALDEACLDLAERAATAVDFPKTGKLVTLPPYLKPKMYPDFMGKEEFQTY 986
Query: 924 KSEKVLGKLYRKIKDV--TDDIDSSETACMVEDLPYDVDLEVVGSSDYLADAWQDKVVYE 751
+S K+LGK+YR+IKD D +SSE + +P+D DL + GS+D++ DAW K Y+
Sbjct: 987 RSNKILGKMYRQIKDAYNEDVSESSEQIFGADKVPFDEDLGIPGSADFINDAWIHKCSYD 1046
Query: 750 RRLNALLAQYRVSSEGEVVTGHIWSLPKFNSRKQGELKERLKNAYSSLHKEHRHAFDTMA 571
+LN LL QY+V E EVVTGH+WS+PK+ SRKQGEL ERLK+AYSSL KE R F+ M
Sbjct: 1047 GQLNGLLGQYKVKREEEVVTGHVWSMPKYKSRKQGELTERLKHAYSSLKKEFRQIFEKMN 1106
Query: 570 PDFLQLTDAEKGVLYERKASAWYQVTYHPQLVKKSLELNEPDLDLVPAR--LSFAWIAAD 397
DF QLTD EK LYE+KASAWYQVTYHP VKKSLEL PD ++ R LSFAWI AD
Sbjct: 1107 SDFDQLTDDEKNRLYEQKASAWYQVTYHPTWVKKSLELQNPD-EVFGERVMLSFAWITAD 1165
Query: 396 YLVRIKIRCGDERRKLNSQRPIDSLASYLSERI 298
YL RIKIR ++S +PI+SLA +L +RI
Sbjct: 1166 YLARIKIR-RKGTGNVDSSKPINSLARFLVDRI 1197
>gb|ADI52625.1| RNA-dependent RNA polymerase 6 [Nicotiana tabacum]
Length = 1197
Score = 1072 bits (2771), Expect = 0.0
Identities = 543/813 (66%), Positives = 637/813 (78%), Gaps = 7/813 (0%)
Frame = -3
Query: 2715 VQDWLLKDRKLLRQPS--NETVEVRRLAITPTKAYCLPAEVELSNRVLRKYKEVADRFLR 2542
+Q WLLK+ KLL + ++ VEVRRL ITPTKAYCLP VELSNRVLR YK VADRFLR
Sbjct: 390 IQKWLLKNPKLLDRTGELDDIVEVRRLVITPTKAYCLPPTVELSNRVLRNYKHVADRFLR 449
Query: 2541 VTFMDEGMXXXXXXXXXXXVAPIVRDITFSSFPQKTTAFRRVNQILTNGFQLCGRKYSFL 2362
VTFMDEGM A IVR+IT +S PQ+T F+RV IL+ GF LCGRKYSFL
Sbjct: 450 VTFMDEGMRNLNRNVLTYYAATIVREITSNSNPQRTAIFQRVKSILSKGFHLCGRKYSFL 509
Query: 2361 AFSSNQLRDRSAWFFAEVVNTITVSNIRNWMGKFSNRNVAKCTARMGQCFSSTYATINVP 2182
AFS+NQLRDRSAWFFAE I V I +WMG+FSNRNVAKC ARMGQCFSSTYAT+ VP
Sbjct: 510 AFSANQLRDRSAWFFAEDPK-IRVPGIISWMGRFSNRNVAKCAARMGQCFSSTYATVEVP 568
Query: 2181 PNEVNPDLEDIVRNEYVFSDGIGKITPDLALEVAEKLQLTDNPPSAYQIRYAGCKGVVAV 2002
+EVN +L DI RN YVFSDGIG I+ DLA+EVAEKL L+ NPPSAYQIRYAGCKGVVA
Sbjct: 569 SSEVNSELPDIERNGYVFSDGIGMISADLAIEVAEKLHLSVNPPSAYQIRYAGCKGVVAC 628
Query: 2001 WLGNGDGIRLSLRPSMNKFESNHTMLEVVSWTKIQPGFLNRQIITLLSSQQVPDSVFERM 1822
W DGIRLSLRPSM KF+SNHT+LE+ SWT+ QPGFLNRQI+TLLSS V D +F M
Sbjct: 629 WPTKNDGIRLSLRPSMKKFDSNHTILEICSWTRFQPGFLNRQIVTLLSSLDVKDGIFWEM 688
Query: 1821 QETMIHKLNQMLVDADVAYEVLTTSCTEQSSTAAMMLSAGFRPQTEPHLKAMISCVRSSQ 1642
Q+ MI L++MLVD+DVA++V+T SC E +TAA+MLSAGF+PQ+EPHL+ M+S +R+SQ
Sbjct: 689 QKEMISGLDKMLVDSDVAFDVITASCAEAGNTAALMLSAGFKPQSEPHLRGMLSSIRASQ 748
Query: 1641 LGDLLAKTRIFVSKARWLMGCLDELGVLEQGQCFIQTSSLSLENCFSKHGSRFSAPQKNR 1462
LGDL K RIFV RWLMGCLDELG LEQGQCFIQ SS SLENCF KHG +FS +KN
Sbjct: 749 LGDLRNKARIFVPSGRWLMGCLDELGELEQGQCFIQVSSPSLENCFVKHGPKFSDIKKNL 808
Query: 1461 QVIVGTVAMAKNPCLHPGDIRILEAVDVPSLHHLSDCLVFPQKGDRPHTNEASGSDLDGD 1282
QV+ G V +AKNPCLHPGD+RILEAVDVPSL HL DCLVFPQKGDRPH+NEASGSDLDGD
Sbjct: 809 QVVKGLVVIAKNPCLHPGDVRILEAVDVPSLSHLYDCLVFPQKGDRPHSNEASGSDLDGD 868
Query: 1281 LYFVTWDQDLIPPSKKSSIAMDYTPAEVRNLPRQIFPQDIIDFYLKNMINENLGVICNAH 1102
LYFVTWD++LIPPSKKS I M+Y PAEV+ L RQ+ DIIDF+ KNM+ E+LG ICNAH
Sbjct: 869 LYFVTWDENLIPPSKKSWIPMNYEPAEVKQLGRQVNHMDIIDFFSKNMVQESLGEICNAH 928
Query: 1101 VVHADRSEYGAFDENCLKLAELAAIAVDFPKTGKMVTLPPTLKPKCYPDFMGKDGYISYK 922
VVHAD SE+GA DE CLKLAELAA+AVDFPKTGK+VT+P LKPK YPDFMGK+ + SYK
Sbjct: 929 VVHADLSEFGALDEKCLKLAELAALAVDFPKTGKLVTMPFDLKPKMYPDFMGKEEFQSYK 988
Query: 921 SEKVLGKLYRKIKDVTDDID--SSETACMVEDLPYDVDLEVVGSSDYLADAWQDKVVYER 748
S+K+LGKLYR++KDV D S+ + +D+PYD LE++GS+ ++ DAW K Y+
Sbjct: 989 SKKILGKLYRQVKDVCDAEGEVSAGLEVVPKDIPYDTTLEILGSTTFIDDAWNSKCSYDG 1048
Query: 747 RLNALLAQYRVSSEGEVVTGHIWSLPKFNSRKQGELKERLKNAYSSLHKEHRHAFDTMAP 568
+LN LL QY+V+ E EVVTG+IWS+PK+N++KQGELKERLK+AY++L KE R+ F+ M P
Sbjct: 1049 QLNGLLGQYKVNREEEVVTGYIWSMPKYNAKKQGELKERLKHAYNTLRKEFRNVFERMEP 1108
Query: 567 DFLQLTDAEKGVLYERKASAWYQVTYHPQLVKKSLELNEPDLDLVPARLSFAWIAADYLV 388
DF L D EK +YERKASAWYQVTYHP V +SLEL D LSFAWIAADYL
Sbjct: 1109 DFDLLPDDEKNDMYERKASAWYQVTYHPHWVARSLELQLADAVSNTVMLSFAWIAADYLA 1168
Query: 387 RIKIRCGDERRKL---NSQRPIDSLASYLSERI 298
RIKIR R+L +S +PI+SL YL + I
Sbjct: 1169 RIKIR----HRRLQYSDSTKPINSLGRYLVDNI 1197
>dbj|BAF96019.1| RNA-dependent RNA polymerase 6 [Nicotiana tabacum]
Length = 1197
Score = 1069 bits (2765), Expect = 0.0
Identities = 542/813 (66%), Positives = 637/813 (78%), Gaps = 7/813 (0%)
Frame = -3
Query: 2715 VQDWLLKDRKLLRQPS--NETVEVRRLAITPTKAYCLPAEVELSNRVLRKYKEVADRFLR 2542
+Q WLLK+ KLL + ++ VEVRRL ITPTKAYCLP VELSNRVLR YK VADRFLR
Sbjct: 390 IQKWLLKNPKLLDRTGELDDIVEVRRLVITPTKAYCLPPTVELSNRVLRNYKHVADRFLR 449
Query: 2541 VTFMDEGMXXXXXXXXXXXVAPIVRDITFSSFPQKTTAFRRVNQILTNGFQLCGRKYSFL 2362
VTFMDEGM A IVR+IT +S PQ+T F+RV IL+ GF LCGRKYSFL
Sbjct: 450 VTFMDEGMRNLNRNVLTYYAATIVREITSNSNPQRTAIFQRVKSILSKGFHLCGRKYSFL 509
Query: 2361 AFSSNQLRDRSAWFFAEVVNTITVSNIRNWMGKFSNRNVAKCTARMGQCFSSTYATINVP 2182
AFS+NQLRDRSAWFFAE I V I +WMG+FSNRNVAKC ARMGQCFSSTYAT+ VP
Sbjct: 510 AFSANQLRDRSAWFFAEDPK-IRVPGIISWMGRFSNRNVAKCAARMGQCFSSTYATVEVP 568
Query: 2181 PNEVNPDLEDIVRNEYVFSDGIGKITPDLALEVAEKLQLTDNPPSAYQIRYAGCKGVVAV 2002
EVN +L DI RN YVFSDGIG I+ DLA+EVAEKL L+ NPPSAYQIRYAGCKGVVA
Sbjct: 569 SREVNSELPDIERNGYVFSDGIGMISADLAIEVAEKLHLSVNPPSAYQIRYAGCKGVVAC 628
Query: 2001 WLGNGDGIRLSLRPSMNKFESNHTMLEVVSWTKIQPGFLNRQIITLLSSQQVPDSVFERM 1822
W DGIRLSLRPSM KF+SNHT+LE+ SWT+ QPGFLNRQI+TLLSS V D +F M
Sbjct: 629 WPTKNDGIRLSLRPSMKKFDSNHTILEICSWTRFQPGFLNRQIVTLLSSLDVKDGIFWEM 688
Query: 1821 QETMIHKLNQMLVDADVAYEVLTTSCTEQSSTAAMMLSAGFRPQTEPHLKAMISCVRSSQ 1642
Q+ MI L++MLVD+DVA++V+T SC E +TAA+MLSAGF+PQ+EPHL+ M+S +R+SQ
Sbjct: 689 QKEMISGLDKMLVDSDVAFDVITASCAEAGNTAAIMLSAGFKPQSEPHLRGMLSSIRASQ 748
Query: 1641 LGDLLAKTRIFVSKARWLMGCLDELGVLEQGQCFIQTSSLSLENCFSKHGSRFSAPQKNR 1462
LGDL K RIFV RWLMGCLDELG LEQGQCFIQ SS SLENCF KHG +FS ++N
Sbjct: 749 LGDLRNKARIFVPSGRWLMGCLDELGELEQGQCFIQVSSPSLENCFVKHGPKFSDIKQNL 808
Query: 1461 QVIVGTVAMAKNPCLHPGDIRILEAVDVPSLHHLSDCLVFPQKGDRPHTNEASGSDLDGD 1282
QV+ G V +AKNPCLHPGD+RILEAVDVPSL HL DCLVFPQKGDRPH+NEASGSDLDGD
Sbjct: 809 QVVKGLVVIAKNPCLHPGDVRILEAVDVPSLSHLYDCLVFPQKGDRPHSNEASGSDLDGD 868
Query: 1281 LYFVTWDQDLIPPSKKSSIAMDYTPAEVRNLPRQIFPQDIIDFYLKNMINENLGVICNAH 1102
LYFVTWD++LIPPSKKS I M+Y PAEV+ L RQ+ DIIDF+ KNM+ E+LG ICNAH
Sbjct: 869 LYFVTWDENLIPPSKKSWIPMNYEPAEVKQLGRQVNHMDIIDFFSKNMVQESLGEICNAH 928
Query: 1101 VVHADRSEYGAFDENCLKLAELAAIAVDFPKTGKMVTLPPTLKPKCYPDFMGKDGYISYK 922
VVHAD SE+GA DE CLKLAELAA+AVDFPKTGK+VT+P LKPK YPDFMGK+ + SYK
Sbjct: 929 VVHADLSEFGALDEKCLKLAELAALAVDFPKTGKLVTMPFDLKPKMYPDFMGKEEFQSYK 988
Query: 921 SEKVLGKLYRKIKDVTDDID--SSETACMVEDLPYDVDLEVVGSSDYLADAWQDKVVYER 748
S+K+LGKLYR++KDV D S+ + +D+PYD LE++GS+ ++ DAW K Y+
Sbjct: 989 SKKILGKLYRQVKDVCDAEGEVSAGLEVVPKDIPYDSTLEILGSTAFIDDAWNSKCSYDG 1048
Query: 747 RLNALLAQYRVSSEGEVVTGHIWSLPKFNSRKQGELKERLKNAYSSLHKEHRHAFDTMAP 568
+L+ LL QY+V+ E EVVTGHIWS+PK++++KQGELKERLK+AY++L KE R+ F+ M P
Sbjct: 1049 QLHGLLGQYKVNREEEVVTGHIWSMPKYSAKKQGELKERLKHAYNTLRKEFRNVFERMDP 1108
Query: 567 DFLQLTDAEKGVLYERKASAWYQVTYHPQLVKKSLELNEPDLDLVPARLSFAWIAADYLV 388
DF L D EK +YERKASAWYQVTYHP V +SLEL PD LSFAWIAADYL
Sbjct: 1109 DFDLLPDDEKNDMYERKASAWYQVTYHPHWVARSLELQLPDAVSNTVMLSFAWIAADYLA 1168
Query: 387 RIKIRCGDERRKL---NSQRPIDSLASYLSERI 298
RIKIR R+L +S +PI+SL YL + I
Sbjct: 1169 RIKIR----HRRLQYSDSTKPINSLGRYLVDNI 1197
>ref|XP_004160762.1| PREDICTED: RNA-dependent RNA polymerase 6-like [Cucumis sativus]
Length = 1197
Score = 1069 bits (2764), Expect = 0.0
Identities = 528/812 (65%), Positives = 634/812 (78%), Gaps = 5/812 (0%)
Frame = -3
Query: 2718 LVQDWLLKDRKLLRQPSN--ETVEVRRLAITPTKAYCLPAEVELSNRVLRKYKEVADRFL 2545
LVQ+WLLK+ LL++ + VE+RRL ITP+KAYC P EVELSNRVLR+YK+VADRFL
Sbjct: 388 LVQEWLLKNPTLLKRSKELVDIVEIRRLVITPSKAYCFPPEVELSNRVLRRYKDVADRFL 447
Query: 2544 RVTFMDEGMXXXXXXXXXXXVAPIVRDITFSSFPQKTTAFRRVNQILTNGFQLCGRKYSF 2365
RVTFMDEGM VAPIV++IT SSFPQKT F R+ IL +GF LCGRKYSF
Sbjct: 448 RVTFMDEGMKKINSHVYTYYVAPIVKEITSSSFPQKTKIFARMKHILKHGFHLCGRKYSF 507
Query: 2364 LAFSSNQLRDRSAWFFAEVVNTITVSNIRNWMGKFSNRNVAKCTARMGQCFSSTYATINV 2185
LA+SSNQLRD+SAWFFAE +I+V I WMGKF+N+NVAKC AR+GQCFSSTYATI V
Sbjct: 508 LAYSSNQLRDQSAWFFAEC-KSISVDAILGWMGKFTNKNVAKCAARIGQCFSSTYATIEV 566
Query: 2184 PPNEVNPDLEDIVRNEYVFSDGIGKITPDLALEVAEKLQLTDNPPSAYQIRYAGCKGVVA 2005
P N VN DL D+ RN YVFSDGIG ITPDLA EVA+KL++ +PP AYQIRYAG KGVVA
Sbjct: 567 PRNMVNHDLSDVERNGYVFSDGIGTITPDLAQEVADKLKMDGSPPCAYQIRYAGYKGVVA 626
Query: 2004 VWLGNGDGIRLSLRPSMNKFESNHTMLEVVSWTKIQPGFLNRQIITLLSSQQVPDSVFER 1825
W DGIRL+LRPSMNKFESNH +LE+ SWT+ QPGFLNRQIITLLS+ VPD +F
Sbjct: 627 TWPSKKDGIRLALRPSMNKFESNHRILEICSWTRFQPGFLNRQIITLLSTLSVPDEIFWS 686
Query: 1824 MQETMIHKLNQMLVDADVAYEVLTTSCTEQSSTAAMMLSAGFRPQTEPHLKAMISCVRSS 1645
MQETMI KL++M+ D DVA+EVLT SC EQ + AA+MLSAGF P+TEPHL+ M+ C+R++
Sbjct: 687 MQETMISKLDRMITDTDVAFEVLTASCAEQGNAAAIMLSAGFEPRTEPHLRGMLMCIRAA 746
Query: 1644 QLGDLLAKTRIFVSKARWLMGCLDELGVLEQGQCFIQTSSLSLENCFSKHGSRFSAPQKN 1465
QL L K RIFV++ RW MGC DE GVL++GQCFIQ S+ LE CFSKHGS F+ + N
Sbjct: 747 QLWGLREKARIFVTEGRWCMGCFDESGVLQEGQCFIQVSTPLLEKCFSKHGSLFAETKNN 806
Query: 1464 RQVIVGTVAMAKNPCLHPGDIRILEAVDVPSLHHLSDCLVFPQKGDRPHTNEASGSDLDG 1285
V+ GTV +AKNPCLHPGD+RILEAVD P LHHL DCLVFP+ G+RPHTNEASGSDLDG
Sbjct: 807 LTVVRGTVVIAKNPCLHPGDVRILEAVDAPELHHLYDCLVFPRNGERPHTNEASGSDLDG 866
Query: 1284 DLYFVTWDQDLIPPSKKSSIAMDYTPAEVRNLPRQIFPQDIIDFYLKNMINENLGVICNA 1105
DLYF TWD +LIPPSKKS M+Y PAEV+ L R+I DI++F+ KNMINE+LG ICNA
Sbjct: 867 DLYFTTWDGNLIPPSKKSWPPMEYAPAEVKTLQRKITRWDIMEFFAKNMINESLGTICNA 926
Query: 1104 HVVHADRSEYGAFDENCLKLAELAAIAVDFPKTGKMVTLPPTLKPKCYPDFMGKDGYISY 925
HVVHADRS++GA DENC++L+ELAA AVDFPKTGK+VT+PP LKPK YPDFMGK+ SY
Sbjct: 927 HVVHADRSKHGALDENCIQLSELAATAVDFPKTGKLVTMPPHLKPKLYPDFMGKEATQSY 986
Query: 924 KSEKVLGKLYRKIKDVTDD---IDSSETACMVEDLPYDVDLEVVGSSDYLADAWQDKVVY 754
KS K+LGK+YR+I+D DD I S E D+ YDVDLEV G+ D++A+AW K Y
Sbjct: 987 KSTKILGKMYRRIRDAYDDDDMITSRELNFTPGDVHYDVDLEVAGAEDFIAEAWDQKCSY 1046
Query: 753 ERRLNALLAQYRVSSEGEVVTGHIWSLPKFNSRKQGELKERLKNAYSSLHKEHRHAFDTM 574
+ +L+ LL QY+V+ E E+VTGHIWS+PK+ SRKQGELKE+LK++YS+L K+ R F+ +
Sbjct: 1047 DGQLSGLLGQYKVNREEEIVTGHIWSMPKYVSRKQGELKEKLKHSYSTLKKDFRQVFENL 1106
Query: 573 APDFLQLTDAEKGVLYERKASAWYQVTYHPQLVKKSLELNEPDLDLVPARLSFAWIAADY 394
P+F QLT E+ LYE+KASAWYQV YHP +KKSLEL EPD LSF WIAADY
Sbjct: 1107 GPEFEQLTCDERNALYEKKASAWYQVAYHPTWLKKSLELREPDAPEAVPMLSFPWIAADY 1166
Query: 393 LVRIKIRCGDERRKLNSQRPIDSLASYLSERI 298
L RIKI+C + + +PI+SLASYLS+R+
Sbjct: 1167 LARIKIKC-RRTKSFDPTKPINSLASYLSDRM 1197
>ref|NP_001267634.1| RNA-dependent RNA polymerase 6-like [Cucumis sativus]
gi|316989907|gb|ADU77019.1| RNA-dependent RNA polymerase
6 [Cucumis sativus]
Length = 1197
Score = 1069 bits (2764), Expect = 0.0
Identities = 528/812 (65%), Positives = 634/812 (78%), Gaps = 5/812 (0%)
Frame = -3
Query: 2718 LVQDWLLKDRKLLRQPSN--ETVEVRRLAITPTKAYCLPAEVELSNRVLRKYKEVADRFL 2545
LVQ+WLLK+ LL++ + VE+RRL ITP+KAYC P EVELSNRVLR+YK+VADRFL
Sbjct: 388 LVQEWLLKNPTLLKRSKELVDIVEIRRLVITPSKAYCFPPEVELSNRVLRRYKDVADRFL 447
Query: 2544 RVTFMDEGMXXXXXXXXXXXVAPIVRDITFSSFPQKTTAFRRVNQILTNGFQLCGRKYSF 2365
RVTFMDEGM VAPIV++IT SSFPQKT F R+ IL +GF LCGRKYSF
Sbjct: 448 RVTFMDEGMKKINSHVYTYYVAPIVKEITSSSFPQKTKIFARMKHILKHGFHLCGRKYSF 507
Query: 2364 LAFSSNQLRDRSAWFFAEVVNTITVSNIRNWMGKFSNRNVAKCTARMGQCFSSTYATINV 2185
LA+SSNQLRD+SAWFFAE +I+V I WMGKF+N+NVAKC AR+GQCFSSTYATI V
Sbjct: 508 LAYSSNQLRDQSAWFFAEC-KSISVDAILGWMGKFTNKNVAKCAARIGQCFSSTYATIEV 566
Query: 2184 PPNEVNPDLEDIVRNEYVFSDGIGKITPDLALEVAEKLQLTDNPPSAYQIRYAGCKGVVA 2005
P N VN DL D+ RN YVFSDGIG ITPDLA EVA+KL++ +PP AYQIRYAG KGVVA
Sbjct: 567 PRNMVNHDLSDVERNGYVFSDGIGTITPDLAQEVADKLKMDGSPPCAYQIRYAGYKGVVA 626
Query: 2004 VWLGNGDGIRLSLRPSMNKFESNHTMLEVVSWTKIQPGFLNRQIITLLSSQQVPDSVFER 1825
W DGIRL+LRPSMNKFESNH +LE+ SWT+ QPGFLNRQIITLLS+ VPD +F
Sbjct: 627 TWPSKKDGIRLALRPSMNKFESNHRILEICSWTRFQPGFLNRQIITLLSTLSVPDEIFWS 686
Query: 1824 MQETMIHKLNQMLVDADVAYEVLTTSCTEQSSTAAMMLSAGFRPQTEPHLKAMISCVRSS 1645
MQETMI KL++M+ D DVA+EVLT SC EQ + AA+MLSAGF P+TEPHL+ M+ C+R++
Sbjct: 687 MQETMISKLDRMITDTDVAFEVLTASCAEQGNAAAIMLSAGFEPRTEPHLRGMLMCIRAA 746
Query: 1644 QLGDLLAKTRIFVSKARWLMGCLDELGVLEQGQCFIQTSSLSLENCFSKHGSRFSAPQKN 1465
QL L K RIFV++ RW MGC DE GVL++GQCFIQ S+ LE CFSKHGS F+ + N
Sbjct: 747 QLWGLREKARIFVTEGRWCMGCFDESGVLQEGQCFIQVSTPLLEKCFSKHGSLFAETKNN 806
Query: 1464 RQVIVGTVAMAKNPCLHPGDIRILEAVDVPSLHHLSDCLVFPQKGDRPHTNEASGSDLDG 1285
V+ GTV +AKNPCLHPGD+RILEAVD P LHHL DCLVFP+ G+RPHTNEASGSDLDG
Sbjct: 807 LTVVRGTVVIAKNPCLHPGDVRILEAVDAPELHHLYDCLVFPRNGERPHTNEASGSDLDG 866
Query: 1284 DLYFVTWDQDLIPPSKKSSIAMDYTPAEVRNLPRQIFPQDIIDFYLKNMINENLGVICNA 1105
DLYF TWD +LIPPSKKS M+Y PAEV+ L R+I DI++F+ KNMINE+LG ICNA
Sbjct: 867 DLYFTTWDGNLIPPSKKSWPPMEYAPAEVKTLQRKITRWDIMEFFAKNMINESLGTICNA 926
Query: 1104 HVVHADRSEYGAFDENCLKLAELAAIAVDFPKTGKMVTLPPTLKPKCYPDFMGKDGYISY 925
HVVHADRS++GA DENC++L+ELAA AVDFPKTGK+VT+PP LKPK YPDFMGK+ SY
Sbjct: 927 HVVHADRSKHGALDENCIQLSELAATAVDFPKTGKLVTMPPHLKPKLYPDFMGKEATQSY 986
Query: 924 KSEKVLGKLYRKIKDVTDD---IDSSETACMVEDLPYDVDLEVVGSSDYLADAWQDKVVY 754
KS K+LGK+YR+I+D DD I S E D+ YDVDLEV G+ D++A+AW K Y
Sbjct: 987 KSTKILGKMYRRIRDAYDDDDMITSRELNFTPGDVHYDVDLEVAGAEDFIAEAWDQKCSY 1046
Query: 753 ERRLNALLAQYRVSSEGEVVTGHIWSLPKFNSRKQGELKERLKNAYSSLHKEHRHAFDTM 574
+ +L+ LL QY+V+ E E+VTGHIWS+PK+ SRKQGELKE+LK++YS+L K+ R F+ +
Sbjct: 1047 DGQLSGLLGQYKVNREEEIVTGHIWSMPKYVSRKQGELKEKLKHSYSTLKKDFRQVFENL 1106
Query: 573 APDFLQLTDAEKGVLYERKASAWYQVTYHPQLVKKSLELNEPDLDLVPARLSFAWIAADY 394
P+F QLT E+ LYE+KASAWYQV YHP +KKSLEL EPD LSF WIAADY
Sbjct: 1107 GPEFEQLTCDERNALYEKKASAWYQVAYHPTWLKKSLELREPDAPEAVPMLSFPWIAADY 1166
Query: 393 LVRIKIRCGDERRKLNSQRPIDSLASYLSERI 298
L RIKI+C + + +PI+SLASYLS+R+
Sbjct: 1167 LARIKIKC-RRTKSFDPTKPINSLASYLSDRM 1197
>gb|ACA13601.1| RNA-dependent RNA polymerase [Nicotiana attenuata]
Length = 1197
Score = 1067 bits (2759), Expect = 0.0
Identities = 538/810 (66%), Positives = 635/810 (78%), Gaps = 4/810 (0%)
Frame = -3
Query: 2715 VQDWLLKDRKLLRQPS--NETVEVRRLAITPTKAYCLPAEVELSNRVLRKYKEVADRFLR 2542
++ WLLK+ KLL + ++ VEVRRL ITPTKAYCLP VELSNRVLR YK VADRFLR
Sbjct: 390 IRKWLLKNPKLLERTGELDDIVEVRRLVITPTKAYCLPPTVELSNRVLRNYKHVADRFLR 449
Query: 2541 VTFMDEGMXXXXXXXXXXXVAPIVRDITFSSFPQKTTAFRRVNQILTNGFQLCGRKYSFL 2362
VTFMDEGM A IVR+IT +S PQ+T F+RV IL+ GF LCGRKYSFL
Sbjct: 450 VTFMDEGMRNLNRNVLTYYAATIVREITSNSNPQRTAIFQRVKSILSRGFHLCGRKYSFL 509
Query: 2361 AFSSNQLRDRSAWFFAEVVNTITVSNIRNWMGKFSNRNVAKCTARMGQCFSSTYATINVP 2182
AFS+NQLRDRSAWFFAE I V I +WMG+FSNRNVAKC ARMGQCFSSTYAT+ VP
Sbjct: 510 AFSANQLRDRSAWFFAEDPK-IRVPGIISWMGRFSNRNVAKCAARMGQCFSSTYATVEVP 568
Query: 2181 PNEVNPDLEDIVRNEYVFSDGIGKITPDLALEVAEKLQLTDNPPSAYQIRYAGCKGVVAV 2002
+EVN +L DI RN YVFSDGIG I+ DLA+EVAEKL L+ NPPSAYQIRYAGCKGVVA
Sbjct: 569 SSEVNSELPDIERNGYVFSDGIGMISADLAVEVAEKLHLSVNPPSAYQIRYAGCKGVVAC 628
Query: 2001 WLGNGDGIRLSLRPSMNKFESNHTMLEVVSWTKIQPGFLNRQIITLLSSQQVPDSVFERM 1822
W DGIRLSLRPSM KF+SNHT+LE+ SWT+ QPGFLNRQI+TLLSS V D +F M
Sbjct: 629 WPTKNDGIRLSLRPSMKKFDSNHTILEICSWTRFQPGFLNRQIVTLLSSLDVKDGIFWEM 688
Query: 1821 QETMIHKLNQMLVDADVAYEVLTTSCTEQSSTAAMMLSAGFRPQTEPHLKAMISCVRSSQ 1642
Q+ MI L++MLVD+DVA++V+T SC E +TAA+MLSAGF+PQ+EPHL+ M+S +R+SQ
Sbjct: 689 QKEMISGLDKMLVDSDVAFDVITASCAEAGNTAAIMLSAGFKPQSEPHLRGMLSSIRASQ 748
Query: 1641 LGDLLAKTRIFVSKARWLMGCLDELGVLEQGQCFIQTSSLSLENCFSKHGSRFSAPQKNR 1462
LGDL K RIFV RWLMGCLDELG LEQGQCFIQ SS SLENCF KHG +FS +KN
Sbjct: 749 LGDLRNKARIFVPSGRWLMGCLDELGELEQGQCFIQVSSPSLENCFIKHGPKFSDIKKNL 808
Query: 1461 QVIVGTVAMAKNPCLHPGDIRILEAVDVPSLHHLSDCLVFPQKGDRPHTNEASGSDLDGD 1282
QV+ G V +AKNPCLHPGD+RILEAVDVP LHHL DCLVFPQKGDRPH+NEASGSDLDGD
Sbjct: 809 QVVKGLVVIAKNPCLHPGDVRILEAVDVPGLHHLYDCLVFPQKGDRPHSNEASGSDLDGD 868
Query: 1281 LYFVTWDQDLIPPSKKSSIAMDYTPAEVRNLPRQIFPQDIIDFYLKNMINENLGVICNAH 1102
LYFVTWD++LIPPSKKS I M+Y PAEV+ + RQ+ DIIDF+ KNM+ E+LG ICNAH
Sbjct: 869 LYFVTWDENLIPPSKKSWIPMNYEPAEVKQMGRQVNHMDIIDFFSKNMVQESLGEICNAH 928
Query: 1101 VVHADRSEYGAFDENCLKLAELAAIAVDFPKTGKMVTLPPTLKPKCYPDFMGKDGYISYK 922
VVHAD SE+GA DE CLKLAELAA+AVDFPKTGK+VT+P LKPK YPDFMGK+ + SYK
Sbjct: 929 VVHADLSEFGALDEKCLKLAELAALAVDFPKTGKLVTMPFDLKPKMYPDFMGKEEFQSYK 988
Query: 921 SEKVLGKLYRKIKDV--TDDIDSSETACMVEDLPYDVDLEVVGSSDYLADAWQDKVVYER 748
S+K+LGKLYR++KDV T+ S+ + D+PYD LE+ GS+ ++ DAW K Y+
Sbjct: 989 SKKILGKLYRQVKDVCDTEGEVSAGLELVPNDIPYDSSLEIPGSTAFIDDAWNSKCSYDG 1048
Query: 747 RLNALLAQYRVSSEGEVVTGHIWSLPKFNSRKQGELKERLKNAYSSLHKEHRHAFDTMAP 568
+L+ LL QY+V+ E EVVTGHIWS+PK++++KQGELKERLK+AY++L KE R+ F+ M P
Sbjct: 1049 QLHGLLGQYKVNREEEVVTGHIWSMPKYSAKKQGELKERLKHAYNTLRKEFRNVFERMEP 1108
Query: 567 DFLQLTDAEKGVLYERKASAWYQVTYHPQLVKKSLELNEPDLDLVPARLSFAWIAADYLV 388
DF L D EK +YERKASAWYQVTY+P V +SLEL PD LSFAWIAADYL
Sbjct: 1109 DFDLLPDDEKNDMYERKASAWYQVTYNPHWVARSLELQLPDAVSSTVMLSFAWIAADYLA 1168
Query: 387 RIKIRCGDERRKLNSQRPIDSLASYLSERI 298
RIKIR + +S +PI+SL YL + I
Sbjct: 1169 RIKIRHRGLQYS-DSTKPINSLGRYLVDNI 1197