BLASTX nr result
ID: Zingiber24_contig00000240
seq
BLASTX 2.2.25 [Feb-01-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= Zingiber24_contig00000240
(701 letters)
Database: ./nr
37,332,560 sequences; 13,225,080,153 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gb|ABD77414.1| ribulose-1,5-bisphosphate carboxylase/oxygenase s... 226 7e-57
gb|ABQ42552.1| chloroplast ribulose-1,5-bisphosphate carboxylase... 168 7e-53
gb|ABA46899.1| chloroplast ribulose-1,5-bisphosphate carboxylase... 168 1e-52
sp|O24045.1|RBS_MUSAC RecName: Full=Ribulose bisphosphate carbox... 166 3e-52
gb|ABA46901.1| chloroplast ribulose-1,5-bisphosphate carboxylase... 167 3e-50
gb|ABA46900.1| chloroplast ribulose-1,5-bisphosphate carboxylase... 158 8e-49
gb|ABA46879.1| chloroplast ribulose-1,5-bisphosphate carboxylase... 168 2e-44
gb|ABA46887.1| chloroplast ribulose-1,5-bisphosphate carboxylase... 167 3e-43
gb|ABA46875.1| chloroplast ribulose-1,5-bisphosphate carboxylase... 166 8e-43
gb|ABA46877.1| chloroplast ribulose-1,5-bisphosphate carboxylase... 164 2e-42
gb|ABA46882.1| chloroplast ribulose-1,5-bisphosphate carboxylase... 164 3e-42
gb|ABA46878.1| chloroplast ribulose-1,5-bisphosphate carboxylase... 163 4e-42
gb|ABA46910.1| chloroplast ribulose-1,5-bisphosphate carboxylase... 162 1e-41
gb|AEJ33935.1| chloroplast putative ribulose-1,5-bisphosphate ca... 134 4e-41
sp|P19311.1|RBS5_LEMGI RecName: Full=Ribulose bisphosphate carbo... 135 5e-41
gb|ABA46909.1| chloroplast ribulose-1,5-bisphosphate carboxylase... 160 5e-41
sp|P19312.1|RBS6_LEMGI RecName: Full=Ribulose bisphosphate carbo... 134 9e-41
gb|ABA46911.1| chloroplast ribulose-1,5-bisphosphate carboxylase... 159 9e-41
ref|XP_006663954.1| PREDICTED: ribulose bisphosphate carboxylase... 131 1e-40
gb|ABA46898.1| chloroplast ribulose-1,5-bisphosphate carboxylase... 158 1e-40
>gb|ABD77414.1| ribulose-1,5-bisphosphate carboxylase/oxygenase small subunit
[Zingiber officinale]
Length = 121
Score = 226 bits (575), Expect = 7e-57
Identities = 109/110 (99%), Positives = 109/110 (99%)
Frame = +2
Query: 128 LSPMASSSATMVVSCARSSSGMVAPFSGLKSLSGVPFPTKRANADLSHLPSNGCRVRCMQ 307
LSPMASSSATMVVSCARSSSGMVAPFSGLKSLSGVPFPTKRANA LSHLPSNGCRVRCMQ
Sbjct: 1 LSPMASSSATMVVSCARSSSGMVAPFSGLKSLSGVPFPTKRANAHLSHLPSNGCRVRCMQ 60
Query: 308 VWPIEGKKKFETLSYLPTLKDEALLKQIEYLLRSNWIPCLEFCKRGFVWR 457
VWPIEGKKKFETLSYLPTLKDEALLKQIEYLLRSNWIPCLEFCKRGFVWR
Sbjct: 61 VWPIEGKKKFETLSYLPTLKDEALLKQIEYLLRSNWIPCLEFCKRGFVWR 110
>gb|ABQ42552.1| chloroplast ribulose-1,5-bisphosphate carboxylase/oxygenase small
subunit [Musa acuminata AAA Group]
gi|238801314|gb|ACR56377.1| chloroplast
ribulose-1,5-bisphosphate carboxylase/oxygenase small
subunit [Musa acuminata AAA Group]
Length = 180
Score = 168 bits (426), Expect(2) = 7e-53
Identities = 83/121 (68%), Positives = 93/121 (76%)
Frame = +2
Query: 128 LSPMASSSATMVVSCARSSSGMVAPFSGLKSLSGVPFPTKRANADLSHLPSNGCRVRCMQ 307
+S M SSA + + S MVAPF+GLKS S P T++ NADLSHLPSNG RV+CM+
Sbjct: 2 VSSMMVSSAATFTRASPAQSSMVAPFTGLKSASAFPV-TRKPNADLSHLPSNGGRVQCMK 60
Query: 308 VWPIEGKKKFETLSYLPTLKDEALLKQIEYLLRSNWIPCLEFCKRGFVWRENHXXXXXXE 487
VWPIEG KKFETLSYLPTLKDEALLKQIEYLLRS WIPCLEFC +GFVWRENH +
Sbjct: 61 VWPIEGLKKFETLSYLPTLKDEALLKQIEYLLRSKWIPCLEFCPKGFVWRENHRSPGYYD 120
Query: 488 G 490
G
Sbjct: 121 G 121
Score = 65.9 bits (159), Expect(2) = 7e-53
Identities = 30/31 (96%), Positives = 30/31 (96%)
Frame = +3
Query: 483 KKEYPDAFIRIIGFDNNRQVQCISFIAYKPT 575
KKEYP AFIRIIGFDNNRQVQCISFIAYKPT
Sbjct: 148 KKEYPHAFIRIIGFDNNRQVQCISFIAYKPT 178
>gb|ABA46899.1| chloroplast ribulose-1,5-bisphosphate carboxylase/oxygenase small
subunit [Musa acuminata AAA Group]
Length = 180
Score = 168 bits (426), Expect(2) = 1e-52
Identities = 83/121 (68%), Positives = 93/121 (76%)
Frame = +2
Query: 128 LSPMASSSATMVVSCARSSSGMVAPFSGLKSLSGVPFPTKRANADLSHLPSNGCRVRCMQ 307
+S M SSA + + S MVAPF+GLKS S P T++ NADLSHLPSNG RV+CM+
Sbjct: 2 VSSMMVSSAATFTRASPAQSSMVAPFTGLKSASAFPV-TRKPNADLSHLPSNGGRVQCMK 60
Query: 308 VWPIEGKKKFETLSYLPTLKDEALLKQIEYLLRSNWIPCLEFCKRGFVWRENHXXXXXXE 487
VWPIEG KKFETLSYLPTLKDEALLKQIEYLLRS WIPCLEFC +GFVWRENH +
Sbjct: 61 VWPIEGVKKFETLSYLPTLKDEALLKQIEYLLRSKWIPCLEFCPKGFVWRENHRSPGYYD 120
Query: 488 G 490
G
Sbjct: 121 G 121
Score = 65.5 bits (158), Expect(2) = 1e-52
Identities = 29/31 (93%), Positives = 30/31 (96%)
Frame = +3
Query: 483 KKEYPDAFIRIIGFDNNRQVQCISFIAYKPT 575
KKEYP AFIRIIGFDNNRQVQC+SFIAYKPT
Sbjct: 148 KKEYPHAFIRIIGFDNNRQVQCVSFIAYKPT 178
>sp|O24045.1|RBS_MUSAC RecName: Full=Ribulose bisphosphate carboxylase small chain,
chloroplastic; Short=RuBisCO small subunit; Flags:
Precursor gi|2258433|gb|AAB63287.1|
ribulose-1,5-bisphosphate carboxylase small subunit
[Musa acuminata]
Length = 180
Score = 166 bits (421), Expect(2) = 3e-52
Identities = 81/121 (66%), Positives = 93/121 (76%)
Frame = +2
Query: 128 LSPMASSSATMVVSCARSSSGMVAPFSGLKSLSGVPFPTKRANADLSHLPSNGCRVRCMQ 307
+S M SSA + + S MVAPF+GLKS S P T++ NADLSHLPSNG RV+CM+
Sbjct: 2 VSSMMVSSAATFTRASPAQSSMVAPFTGLKSASAFPV-TRKPNADLSHLPSNGGRVQCMK 60
Query: 308 VWPIEGKKKFETLSYLPTLKDEALLKQIEYLLRSNWIPCLEFCKRGFVWRENHXXXXXXE 487
VWPIEG KKFETLSYLPT+KDEAL+KQIEYLLRS WIPCLEFC +GFVWRENH +
Sbjct: 61 VWPIEGVKKFETLSYLPTMKDEALVKQIEYLLRSKWIPCLEFCPKGFVWRENHRSPGYYD 120
Query: 488 G 490
G
Sbjct: 121 G 121
Score = 65.9 bits (159), Expect(2) = 3e-52
Identities = 30/31 (96%), Positives = 30/31 (96%)
Frame = +3
Query: 483 KKEYPDAFIRIIGFDNNRQVQCISFIAYKPT 575
KKEYP AFIRIIGFDNNRQVQCISFIAYKPT
Sbjct: 148 KKEYPHAFIRIIGFDNNRQVQCISFIAYKPT 178
>gb|ABA46901.1| chloroplast ribulose-1,5-bisphosphate carboxylase/oxygenase small
subunit [Musa acuminata AAA Group]
Length = 181
Score = 167 bits (422), Expect(2) = 3e-50
Identities = 83/120 (69%), Positives = 93/120 (77%)
Frame = +2
Query: 131 SPMASSSATMVVSCARSSSGMVAPFSGLKSLSGVPFPTKRANADLSHLPSNGCRVRCMQV 310
S M SS+A +V + + S MVAPF+GLKS S P T++ANADLSHLPSNG RV+CM+V
Sbjct: 4 SVMVSSAAAVVSRASPAQSSMVAPFTGLKSTSAFPV-TRKANADLSHLPSNGGRVQCMKV 62
Query: 311 WPIEGKKKFETLSYLPTLKDEALLKQIEYLLRSNWIPCLEFCKRGFVWRENHXXXXXXEG 490
WPIEGKKKFETLSYLPTL DE LLKQIEYLLRS WIPCLEF GFVWRENH +G
Sbjct: 63 WPIEGKKKFETLSYLPTLVDEVLLKQIEYLLRSKWIPCLEFSHEGFVWRENHRSPGYYDG 122
Score = 58.5 bits (140), Expect(2) = 3e-50
Identities = 26/30 (86%), Positives = 28/30 (93%)
Frame = +3
Query: 483 KKEYPDAFIRIIGFDNNRQVQCISFIAYKP 572
KKEYP AF+ IIGFDNNRQVQCISFIA+KP
Sbjct: 149 KKEYPRAFVGIIGFDNNRQVQCISFIAHKP 178
>gb|ABA46900.1| chloroplast ribulose-1,5-bisphosphate carboxylase/oxygenase small
subunit [Musa acuminata AAA Group]
Length = 180
Score = 158 bits (400), Expect(2) = 8e-49
Identities = 81/120 (67%), Positives = 90/120 (75%)
Frame = +2
Query: 131 SPMASSSATMVVSCARSSSGMVAPFSGLKSLSGVPFPTKRANADLSHLPSNGCRVRCMQV 310
S M SSA V + + S MVAPF+GLKS S P T++ANADLSHLPSNG RV+CM+V
Sbjct: 3 SSMMVSSAATVSRASPAQSSMVAPFTGLKSTSAFPV-TRKANADLSHLPSNGGRVQCMKV 61
Query: 311 WPIEGKKKFETLSYLPTLKDEALLKQIEYLLRSNWIPCLEFCKRGFVWRENHXXXXXXEG 490
WPIEGKKKFETLSYLPTL DE L+KQIEYLLRS WIPCLEF GFV RENH +G
Sbjct: 62 WPIEGKKKFETLSYLPTLVDEPLVKQIEYLLRSKWIPCLEFSHEGFVGRENHRSPGYYDG 121
Score = 62.4 bits (150), Expect(2) = 8e-49
Identities = 28/30 (93%), Positives = 29/30 (96%)
Frame = +3
Query: 483 KKEYPDAFIRIIGFDNNRQVQCISFIAYKP 572
KKEYP AFIRIIGFDNNRQVQCISFIA+KP
Sbjct: 148 KKEYPKAFIRIIGFDNNRQVQCISFIAFKP 177
>gb|ABA46879.1| chloroplast ribulose-1,5-bisphosphate carboxylase/oxygenase small
subunit [Musa balbisiana]
Length = 161
Score = 168 bits (425), Expect(2) = 2e-44
Identities = 88/121 (72%), Positives = 97/121 (80%), Gaps = 1/121 (0%)
Frame = +2
Query: 131 SPMASSSATMV-VSCARSSSGMVAPFSGLKSLSGVPFPTKRANADLSHLPSNGCRVRCMQ 307
S M SS+AT VS A+SS MVAPF+GLKS S P T++ NADLSHLPSNG RV+CM+
Sbjct: 2 SMMVSSAATFTRVSPAQSS--MVAPFTGLKSASAFPV-TRKPNADLSHLPSNGGRVQCMK 58
Query: 308 VWPIEGKKKFETLSYLPTLKDEALLKQIEYLLRSNWIPCLEFCKRGFVWRENHXXXXXXE 487
VWPIEG KKFETLSYLPTLKDEALLKQIEYLLRS WIPCLEFC +GFVWRENH +
Sbjct: 59 VWPIEGLKKFETLSYLPTLKDEALLKQIEYLLRSKWIPCLEFCPKGFVWRENHRSPGYYD 118
Query: 488 G 490
G
Sbjct: 119 G 119
Score = 37.7 bits (86), Expect(2) = 2e-44
Identities = 16/16 (100%), Positives = 16/16 (100%)
Frame = +3
Query: 483 KKEYPDAFIRIIGFDN 530
KKEYPDAFIRIIGFDN
Sbjct: 146 KKEYPDAFIRIIGFDN 161
>gb|ABA46887.1| chloroplast ribulose-1,5-bisphosphate carboxylase/oxygenase small
subunit [Musa AAAB Group]
Length = 161
Score = 167 bits (423), Expect(2) = 3e-43
Identities = 82/120 (68%), Positives = 93/120 (77%)
Frame = +2
Query: 131 SPMASSSATMVVSCARSSSGMVAPFSGLKSLSGVPFPTKRANADLSHLPSNGCRVRCMQV 310
S M SSA V + + S MVAPF+GLKS S P T++ NADLSHLPSNG RV+CM+V
Sbjct: 1 SSMMVSSAATVSRASPAQSSMVAPFTGLKSASAFPV-TRKPNADLSHLPSNGGRVQCMKV 59
Query: 311 WPIEGKKKFETLSYLPTLKDEALLKQIEYLLRSNWIPCLEFCKRGFVWRENHXXXXXXEG 490
WPIEG +KFETLSYLPT+KDEALLKQIEYLLRS WIPCLEFC +GFVWRENH +G
Sbjct: 60 WPIEGVRKFETLSYLPTMKDEALLKQIEYLLRSKWIPCLEFCPKGFVWRENHRSPGYYDG 119
Score = 35.0 bits (79), Expect(2) = 3e-43
Identities = 15/16 (93%), Positives = 15/16 (93%)
Frame = +3
Query: 483 KKEYPDAFIRIIGFDN 530
KKEYP AFIRIIGFDN
Sbjct: 146 KKEYPHAFIRIIGFDN 161
>gb|ABA46875.1| chloroplast ribulose-1,5-bisphosphate carboxylase/oxygenase small
subunit [Musa balbisiana] gi|76574189|gb|ABA46876.1|
chloroplast ribulose-1,5-bisphosphate
carboxylase/oxygenase small subunit [Musa balbisiana]
Length = 161
Score = 166 bits (419), Expect(2) = 8e-43
Identities = 83/120 (69%), Positives = 92/120 (76%)
Frame = +2
Query: 131 SPMASSSATMVVSCARSSSGMVAPFSGLKSLSGVPFPTKRANADLSHLPSNGCRVRCMQV 310
S M SSA V + + S MVAPF+GLKS S P T++ANADLSHLPSNG RV+CM+V
Sbjct: 1 SSMMVSSAATVSRASPAQSSMVAPFTGLKSTSAFPI-TRKANADLSHLPSNGGRVQCMKV 59
Query: 311 WPIEGKKKFETLSYLPTLKDEALLKQIEYLLRSNWIPCLEFCKRGFVWRENHXXXXXXEG 490
WPIEGKKKFETLSYLPTL DEAL+KQIEYLLRS WIPCLEF GFVWRENH +G
Sbjct: 60 WPIEGKKKFETLSYLPTLVDEALVKQIEYLLRSRWIPCLEFSHEGFVWRENHRSPGYYDG 119
Score = 35.0 bits (79), Expect(2) = 8e-43
Identities = 15/16 (93%), Positives = 15/16 (93%)
Frame = +3
Query: 483 KKEYPDAFIRIIGFDN 530
KKEYP AFIRIIGFDN
Sbjct: 146 KKEYPKAFIRIIGFDN 161
>gb|ABA46877.1| chloroplast ribulose-1,5-bisphosphate carboxylase/oxygenase small
subunit [Musa balbisiana]
Length = 161
Score = 164 bits (416), Expect(2) = 2e-42
Identities = 82/120 (68%), Positives = 92/120 (76%)
Frame = +2
Query: 131 SPMASSSATMVVSCARSSSGMVAPFSGLKSLSGVPFPTKRANADLSHLPSNGCRVRCMQV 310
S M SSA V + + S MVAPF+GLKS S P T++ANADLSHLPSNG RV+CM+V
Sbjct: 1 SSMMVSSAATVSRASPAQSSMVAPFTGLKSTSAFPI-TRKANADLSHLPSNGGRVQCMKV 59
Query: 311 WPIEGKKKFETLSYLPTLKDEALLKQIEYLLRSNWIPCLEFCKRGFVWRENHXXXXXXEG 490
WPIEGKK+FETLSYLPTL DEAL+KQIEYLLRS WIPCLEF GFVWRENH +G
Sbjct: 60 WPIEGKKRFETLSYLPTLVDEALVKQIEYLLRSRWIPCLEFSHEGFVWRENHRSPGYYDG 119
Score = 35.0 bits (79), Expect(2) = 2e-42
Identities = 15/16 (93%), Positives = 15/16 (93%)
Frame = +3
Query: 483 KKEYPDAFIRIIGFDN 530
KKEYP AFIRIIGFDN
Sbjct: 146 KKEYPKAFIRIIGFDN 161
>gb|ABA46882.1| chloroplast ribulose-1,5-bisphosphate carboxylase/oxygenase small
subunit [Musa AAAB Group]
Length = 161
Score = 164 bits (414), Expect(2) = 3e-42
Identities = 82/120 (68%), Positives = 91/120 (75%)
Frame = +2
Query: 131 SPMASSSATMVVSCARSSSGMVAPFSGLKSLSGVPFPTKRANADLSHLPSNGCRVRCMQV 310
S M SSA V + + S MVAPF+GLKS S P T++ANADLSHLP NG RV+CM+V
Sbjct: 1 SSMMVSSAATVSRASPAQSSMVAPFTGLKSTSAFPV-TRKANADLSHLPGNGGRVQCMKV 59
Query: 311 WPIEGKKKFETLSYLPTLKDEALLKQIEYLLRSNWIPCLEFCKRGFVWRENHXXXXXXEG 490
WPIEGKKKFETLSYLPTL DEAL+KQIEYLLRS WIPCLEF GFVWRENH +G
Sbjct: 60 WPIEGKKKFETLSYLPTLVDEALVKQIEYLLRSRWIPCLEFSHEGFVWRENHRSPGYYDG 119
Score = 35.0 bits (79), Expect(2) = 3e-42
Identities = 15/16 (93%), Positives = 15/16 (93%)
Frame = +3
Query: 483 KKEYPDAFIRIIGFDN 530
KKEYP AFIRIIGFDN
Sbjct: 146 KKEYPKAFIRIIGFDN 161
>gb|ABA46878.1| chloroplast ribulose-1,5-bisphosphate carboxylase/oxygenase small
subunit [Musa balbisiana]
Length = 161
Score = 163 bits (413), Expect(2) = 4e-42
Identities = 87/121 (71%), Positives = 95/121 (78%), Gaps = 1/121 (0%)
Frame = +2
Query: 131 SPMASSSATMV-VSCARSSSGMVAPFSGLKSLSGVPFPTKRANADLSHLPSNGCRVRCMQ 307
S M SS+AT VS A+SS MVAPF+GLKS S P T++ NADLSHLPSNG RV+CM+
Sbjct: 2 SMMVSSAATFTRVSPAQSS--MVAPFTGLKSASAFPV-TRKPNADLSHLPSNGGRVQCMK 58
Query: 308 VWPIEGKKKFETLSYLPTLKDEALLKQIEYLLRSNWIPCLEFCKRGFVWRENHXXXXXXE 487
VWPIEG KKFETLSYLPTLKDEALLKQIEYLLRS WIPCLEF GFVWRENH +
Sbjct: 59 VWPIEGLKKFETLSYLPTLKDEALLKQIEYLLRSRWIPCLEFSHEGFVWRENHRSPGYYD 118
Query: 488 G 490
G
Sbjct: 119 G 119
Score = 35.0 bits (79), Expect(2) = 4e-42
Identities = 15/16 (93%), Positives = 15/16 (93%)
Frame = +3
Query: 483 KKEYPDAFIRIIGFDN 530
KKEYP AFIRIIGFDN
Sbjct: 146 KKEYPKAFIRIIGFDN 161
>gb|ABA46910.1| chloroplast ribulose-1,5-bisphosphate carboxylase/oxygenase small
subunit [Musa acuminata]
Length = 161
Score = 162 bits (409), Expect(2) = 1e-41
Identities = 81/120 (67%), Positives = 90/120 (75%)
Frame = +2
Query: 131 SPMASSSATMVVSCARSSSGMVAPFSGLKSLSGVPFPTKRANADLSHLPSNGCRVRCMQV 310
S M SSA V + + S MVAPF+GLKS S P T++ANADLSHLP NG RV+CM+V
Sbjct: 1 SSMMVSSAATVSRASPAQSSMVAPFTGLKSTSAFPV-TRKANADLSHLPGNGGRVQCMKV 59
Query: 311 WPIEGKKKFETLSYLPTLKDEALLKQIEYLLRSNWIPCLEFCKRGFVWRENHXXXXXXEG 490
WPIEGKKKFETLSYLPTL DE L+KQIEYLLRS WIPCLEF GFVWRENH +G
Sbjct: 60 WPIEGKKKFETLSYLPTLVDEPLVKQIEYLLRSKWIPCLEFSHEGFVWRENHRSPGYYDG 119
Score = 34.7 bits (78), Expect(2) = 1e-41
Identities = 14/16 (87%), Positives = 15/16 (93%)
Frame = +3
Query: 483 KKEYPDAFIRIIGFDN 530
KKEYP AF+RIIGFDN
Sbjct: 146 KKEYPKAFVRIIGFDN 161
>gb|AEJ33935.1| chloroplast putative ribulose-1,5-bisphosphate
carboxylase/oxygenase small subunit [Wolffia
australiana]
Length = 177
Score = 134 bits (337), Expect(2) = 4e-41
Identities = 69/121 (57%), Positives = 86/121 (71%), Gaps = 3/121 (2%)
Frame = +2
Query: 137 MASSSATMVVSCARSS---SGMVAPFSGLKSLSGVPFPTKRANADLSHLPSNGCRVRCMQ 307
MASS + AR++ S MVAPF+GL+S + +P T++ANADLS L SNG + RCMQ
Sbjct: 1 MASSMMVSSAAVARATPAQSNMVAPFNGLRSSAALP-ATRKANADLSTLLSNGGKARCMQ 59
Query: 308 VWPIEGKKKFETLSYLPTLKDEALLKQIEYLLRSNWIPCLEFCKRGFVWRENHXXXXXXE 487
VWP EG KKFETLSYLP L EAL K++EYL+R+ WIPC+EF K GFV+RE H +
Sbjct: 60 VWPPEGLKKFETLSYLPPLSTEALAKEVEYLIRNGWIPCIEFSKEGFVYREYHASPGYYD 119
Query: 488 G 490
G
Sbjct: 120 G 120
Score = 60.8 bits (146), Expect(2) = 4e-41
Identities = 26/31 (83%), Positives = 28/31 (90%)
Frame = +3
Query: 483 KKEYPDAFIRIIGFDNNRQVQCISFIAYKPT 575
KK YPD F+RIIGFDN RQVQC+SFIAYKPT
Sbjct: 147 KKAYPDYFVRIIGFDNKRQVQCVSFIAYKPT 177
>sp|P19311.1|RBS5_LEMGI RecName: Full=Ribulose bisphosphate carboxylase small chain SSU5A,
chloroplastic; Short=RuBisCO small subunit SSU5A; Flags:
Precursor gi|295820|emb|CAA35099.1| ribulose
bisphosphate carboxylase [Lemna gibba]
Length = 177
Score = 135 bits (339), Expect(2) = 5e-41
Identities = 71/122 (58%), Positives = 86/122 (70%), Gaps = 4/122 (3%)
Frame = +2
Query: 137 MASSSATMVVSCARSS---SGMVAPFSGLKSLSGVPFP-TKRANADLSHLPSNGCRVRCM 304
MASS + AR+ S MVAPF+GL+S V FP T++AN DLS LPSNG RV CM
Sbjct: 1 MASSMMASTAAVARAGPAQSSMVAPFNGLRS--SVAFPATRKANNDLSTLPSNGGRVSCM 58
Query: 305 QVWPIEGKKKFETLSYLPTLKDEALLKQIEYLLRSNWIPCLEFCKRGFVWRENHXXXXXX 484
QVWP EG KKFETLSYLP L E L K+++YLLR++W+PC+EF K GFV+RENH
Sbjct: 59 QVWPPEGLKKFETLSYLPPLSVEDLAKEVDYLLRNDWVPCIEFSKEGFVYRENHASPGYY 118
Query: 485 EG 490
+G
Sbjct: 119 DG 120
Score = 59.7 bits (143), Expect(2) = 5e-41
Identities = 26/31 (83%), Positives = 28/31 (90%)
Frame = +3
Query: 483 KKEYPDAFIRIIGFDNNRQVQCISFIAYKPT 575
KK YP+ F+RIIGFDN RQVQCISFIAYKPT
Sbjct: 147 KKAYPEYFVRIIGFDNKRQVQCISFIAYKPT 177
>gb|ABA46909.1| chloroplast ribulose-1,5-bisphosphate carboxylase/oxygenase small
subunit [Musa acuminata]
Length = 161
Score = 160 bits (404), Expect(2) = 5e-41
Identities = 81/120 (67%), Positives = 90/120 (75%)
Frame = +2
Query: 131 SPMASSSATMVVSCARSSSGMVAPFSGLKSLSGVPFPTKRANADLSHLPSNGCRVRCMQV 310
S M SSA V + + S MVAPF+GLKS S T++ANADLSHLPSNG RV+CM+V
Sbjct: 1 SSMMVSSAATVSRASPAQSSMVAPFTGLKSTSAFRV-TRKANADLSHLPSNGGRVQCMKV 59
Query: 311 WPIEGKKKFETLSYLPTLKDEALLKQIEYLLRSNWIPCLEFCKRGFVWRENHXXXXXXEG 490
WPIEGKKKFETLSYLPTL DE L+KQIEYLLRS WIPCLEF GFVWRENH +G
Sbjct: 60 WPIEGKKKFETLSYLPTLVDEPLVKQIEYLLRSKWIPCLEFSHEGFVWRENHRSPGYYDG 119
Score = 34.7 bits (78), Expect(2) = 5e-41
Identities = 14/16 (87%), Positives = 15/16 (93%)
Frame = +3
Query: 483 KKEYPDAFIRIIGFDN 530
KKEYP AF+RIIGFDN
Sbjct: 146 KKEYPKAFVRIIGFDN 161
>sp|P19312.1|RBS6_LEMGI RecName: Full=Ribulose bisphosphate carboxylase small chain SSU5B,
chloroplastic; Short=RuBisCO small subunit SSU5B; Flags:
Precursor gi|295821|emb|CAA35100.1| ribulose
bisphosphate carboxylase [Lemna gibba]
Length = 177
Score = 134 bits (337), Expect(2) = 9e-41
Identities = 71/121 (58%), Positives = 89/121 (73%), Gaps = 1/121 (0%)
Frame = +2
Query: 131 SPMASSSATMVVSCARSSSGMVAPFSGLKSLSGVPFP-TKRANADLSHLPSNGCRVRCMQ 307
S MAS++A V A+++ MVAPF+GL+S V FP T++AN DLS LPSNG RV CMQ
Sbjct: 4 SMMASTAAVARVGPAQTN--MVAPFNGLRS--SVAFPATRKANNDLSTLPSNGGRVSCMQ 59
Query: 308 VWPIEGKKKFETLSYLPTLKDEALLKQIEYLLRSNWIPCLEFCKRGFVWRENHXXXXXXE 487
VWP EG KKFETLSYLP L E L K+++YLLR++W+PC+EF K GFV+RENH +
Sbjct: 60 VWPPEGLKKFETLSYLPPLSVEDLAKEVDYLLRNDWVPCIEFSKEGFVYRENHASPGYYD 119
Query: 488 G 490
G
Sbjct: 120 G 120
Score = 59.7 bits (143), Expect(2) = 9e-41
Identities = 26/31 (83%), Positives = 28/31 (90%)
Frame = +3
Query: 483 KKEYPDAFIRIIGFDNNRQVQCISFIAYKPT 575
KK YP+ F+RIIGFDN RQVQCISFIAYKPT
Sbjct: 147 KKAYPEYFVRIIGFDNKRQVQCISFIAYKPT 177
>gb|ABA46911.1| chloroplast ribulose-1,5-bisphosphate carboxylase/oxygenase small
subunit [Musa acuminata]
Length = 161
Score = 159 bits (401), Expect(2) = 9e-41
Identities = 81/120 (67%), Positives = 90/120 (75%)
Frame = +2
Query: 131 SPMASSSATMVVSCARSSSGMVAPFSGLKSLSGVPFPTKRANADLSHLPSNGCRVRCMQV 310
S M SSA V + + S MVAPF+GLKS S P T++ANADLSHLPSNG RV+CM+V
Sbjct: 1 SSMMVSSAATVSRASPAQSSMVAPFTGLKSTSAFPV-TRKANADLSHLPSNGGRVQCMEV 59
Query: 311 WPIEGKKKFETLSYLPTLKDEALLKQIEYLLRSNWIPCLEFCKRGFVWRENHXXXXXXEG 490
WPIEGKKKFETLSYLPTL DE L+KQIEYLLRS WIPCLEF GFV RENH +G
Sbjct: 60 WPIEGKKKFETLSYLPTLVDEPLVKQIEYLLRSKWIPCLEFSHEGFVGRENHRSPGYYDG 119
Score = 35.0 bits (79), Expect(2) = 9e-41
Identities = 15/16 (93%), Positives = 15/16 (93%)
Frame = +3
Query: 483 KKEYPDAFIRIIGFDN 530
KKEYP AFIRIIGFDN
Sbjct: 146 KKEYPKAFIRIIGFDN 161
>ref|XP_006663954.1| PREDICTED: ribulose bisphosphate carboxylase small chain,
chloroplastic-like [Oryza brachyantha]
Length = 170
Score = 131 bits (329), Expect(2) = 1e-40
Identities = 66/111 (59%), Positives = 79/111 (71%)
Frame = +2
Query: 158 MVVSCARSSSGMVAPFSGLKSLSGVPFPTKRANADLSHLPSNGCRVRCMQVWPIEGKKKF 337
M S SS+ VAPF GLKS +G+P + ++ L ++ SNG R++CMQVWPIEG KKF
Sbjct: 1 MAPSVMASSATSVAPFQGLKSTAGMPVSRRSGSSTLGNV-SNGGRIKCMQVWPIEGIKKF 59
Query: 338 ETLSYLPTLKDEALLKQIEYLLRSNWIPCLEFCKRGFVWRENHXXXXXXEG 490
ETLSYLP L E LLKQIEYLLRS W+PCLEF K GFV+RENH +G
Sbjct: 60 ETLSYLPPLSVEDLLKQIEYLLRSKWVPCLEFSKVGFVYRENHRSPGYYDG 110
Score = 62.4 bits (150), Expect(2) = 1e-40
Identities = 28/34 (82%), Positives = 30/34 (88%)
Frame = +3
Query: 483 KKEYPDAFIRIIGFDNNRQVQCISFIAYKPTDAD 584
KK YPDAF+RIIGFDN RQVQCISFIAYKP +D
Sbjct: 137 KKAYPDAFVRIIGFDNVRQVQCISFIAYKPPGSD 170
>gb|ABA46898.1| chloroplast ribulose-1,5-bisphosphate carboxylase/oxygenase small
subunit [Musa acuminata AAA Group]
Length = 161
Score = 158 bits (400), Expect(2) = 1e-40
Identities = 81/120 (67%), Positives = 90/120 (75%)
Frame = +2
Query: 131 SPMASSSATMVVSCARSSSGMVAPFSGLKSLSGVPFPTKRANADLSHLPSNGCRVRCMQV 310
S M SSA V + + S MVAPF+GLKS S P T++ANADLSHLPSNG RV+CM+V
Sbjct: 1 SSMMVSSAATVSRASPAQSSMVAPFTGLKSTSAFPV-TRKANADLSHLPSNGGRVQCMKV 59
Query: 311 WPIEGKKKFETLSYLPTLKDEALLKQIEYLLRSNWIPCLEFCKRGFVWRENHXXXXXXEG 490
WPIEGKKKFETLSYLPTL DE L+KQIEYLLRS WIPCLEF GFV RENH +G
Sbjct: 60 WPIEGKKKFETLSYLPTLVDEPLVKQIEYLLRSKWIPCLEFSHEGFVGRENHRSPGYYDG 119
Score = 35.0 bits (79), Expect(2) = 1e-40
Identities = 15/16 (93%), Positives = 15/16 (93%)
Frame = +3
Query: 483 KKEYPDAFIRIIGFDN 530
KKEYP AFIRIIGFDN
Sbjct: 146 KKEYPKAFIRIIGFDN 161