BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Zingiber23_contig00054660
         (276 letters)

Database: ./nr 
           37,332,560 sequences; 13,225,080,153 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

dbj|BAA22288.1| polyprotein [Oryza australiensis]                      95   8e-18
gb|ADB85411.1| putative retrotransposon protein [Phyllostachys e...    94   2e-17
gb|AAX94813.1| retrotransposon protein, putative, Ty1-copia sub-...    94   2e-17
emb|CAN78262.1| hypothetical protein VITISV_006704 [Vitis vinifera]    94   2e-17
gb|AAD17357.1| contains similarity to retrovirus-related polypro...    93   3e-17
gb|AAM74249.1|AC074355_11 Putative retroelement [Oryza sativa Ja...    93   3e-17
gb|AAP52343.2| retrotransposon protein, putative, Ty1-copia subc...    93   3e-17
gb|AAK70407.1|AF369930_2 pol polyprotein [Citrus x paradisi]           93   4e-17
gb|ABA99473.2| retrotransposon protein, putative, Ty1-copia subc...    92   7e-17
ref|XP_004301658.1| PREDICTED: uncharacterized protein LOC101293...    91   2e-16
gb|AAC26250.1| contains similarity to reverse transcriptase (Pfa...    91   2e-16
emb|CAN66710.1| hypothetical protein VITISV_006397 [Vitis vinifera]    91   2e-16
emb|CAN66959.1| hypothetical protein VITISV_013138 [Vitis vinifera]    91   2e-16
gb|AAV43866.1| putative polyprotein [Oryza sativa Japonica Group...    91   2e-16
ref|XP_004978922.1| PREDICTED: uncharacterized protein LOC101776...    91   2e-16
gb|EMT27510.1| hypothetical protein F775_52220 [Aegilops tauschii]     91   2e-16
gb|AAO60021.1| putative polyprotein [Oryza sativa Japonica Group...    91   2e-16
gb|AAN61480.1| Putative polyprotein from transposon TNT [Oryza s...    91   2e-16
gb|ABA95768.1| retrotransposon protein, putative, Ty1-copia subc...    91   2e-16
gb|ABA96779.1| retrotransposon protein, putative, Ty1-copia subc...    91   2e-16

>dbj|BAA22288.1| polyprotein [Oryza australiensis]
          Length = 1317

 Score = 95.1 bits (235), Expect = 8e-18
 Identities = 48/91 (52%), Positives = 65/91 (71%)
 Frame = +3

Query: 3   EILDCFIRYLNEVEN*LERKVKNLCTDRGGEYLSD*FKTMCNEKEIIRQLTIPGTPQQNG 182
           E  + F  + NEV+N L + +K L +DRGGEY+S  F     +  I+ QLT PGTPQ NG
Sbjct: 539 ESFEKFKEFQNEVQNHLGKTIKFLRSDRGGEYVSQEFGNHLKDCGIVPQLTPPGTPQWNG 598

Query: 183 VAERRNMTFLEIVRSMMAQANLPISYWGDAL 275
           V+ERRN T L++VRSMM+Q++LP+S+WG AL
Sbjct: 599 VSERRNRTLLDMVRSMMSQSDLPLSFWGYAL 629


>gb|ADB85411.1| putative retrotransposon protein [Phyllostachys edulis]
          Length = 566

 Score = 94.0 bits (232), Expect = 2e-17
 Identities = 48/91 (52%), Positives = 64/91 (70%)
 Frame = +3

Query: 3   EILDCFIRYLNEVEN*LERKVKNLCTDRGGEYLSD*FKTMCNEKEIIRQLTIPGTPQQNG 182
           E  + F  + NEV+N L + +K L +DRGGEYL   F    N+  I+ QLT PGTPQ NG
Sbjct: 183 ESFEKFKEFQNEVQNQLGKTIKCLRSDRGGEYLRHEFGDHLNKCGIVPQLTPPGTPQWNG 242

Query: 183 VAERRNMTFLEIVRSMMAQANLPISYWGDAL 275
           V+ERRN T L++VRSMM+Q++LP+ +WG AL
Sbjct: 243 VSERRNRTLLDMVRSMMSQSDLPLQFWGYAL 273


>gb|AAX94813.1| retrotransposon protein, putative, Ty1-copia sub-class [Oryza
           sativa Japonica Group] gi|77550379|gb|ABA93176.1|
           retrotransposon protein, putative, Ty1-copia subclass
           [Oryza sativa Japonica Group]
          Length = 938

 Score = 93.6 bits (231), Expect = 2e-17
 Identities = 48/86 (55%), Positives = 61/86 (70%)
 Frame = +3

Query: 18  FIRYLNEVEN*LERKVKNLCTDRGGEYLSD*FKTMCNEKEIIRQLTIPGTPQQNGVAERR 197
           F  + NEV+N L + +K L +DRGGEYLS  F     E  I+ QLT PGTPQ NGV+ERR
Sbjct: 429 FKEFQNEVQNHLGKTIKYLRSDRGGEYLSLEFGNHLKECGIVPQLTPPGTPQWNGVSERR 488

Query: 198 NMTFLEIVRSMMAQANLPISYWGDAL 275
           N T L++VRSMM+Q +LP+S+WG  L
Sbjct: 489 NRTLLDMVRSMMSQTDLPLSFWGYTL 514


>emb|CAN78262.1| hypothetical protein VITISV_006704 [Vitis vinifera]
          Length = 565

 Score = 93.6 bits (231), Expect = 2e-17
 Identities = 41/91 (45%), Positives = 62/91 (68%)
 Frame = +3

Query: 3   EILDCFIRYLNEVEN*LERKVKNLCTDRGGEYLSD*FKTMCNEKEIIRQLTIPGTPQQNG 182
           E  D FI+Y NEVEN L +K++ L TDRGGEY S+ F + C +  II + T P +P+ NG
Sbjct: 426 EARDAFIKYKNEVENQLNKKIERLRTDRGGEYESNLFNSFCEDHRIIHETTPPYSPESNG 485

Query: 183 VAERRNMTFLEIVRSMMAQANLPISYWGDAL 275
           +AER+N T  E++ +M+  +  P++ WG+A+
Sbjct: 486 IAERKNRTLKEMMNAMLVSSGTPLNLWGEAI 516


>gb|AAD17357.1| contains similarity to retrovirus-related polyproteins [Arabidopsis
           thaliana] gi|7267382|emb|CAB77943.1| putative transposon
           protein [Arabidopsis thaliana]
          Length = 769

 Score = 93.2 bits (230), Expect = 3e-17
 Identities = 47/83 (56%), Positives = 59/83 (71%)
 Frame = +3

Query: 27  YLNEVEN*LERKVKNLCTDRGGEYLSD*FKTMCNEKEIIRQLTIPGTPQQNGVAERRNMT 206
           + NEV+N L + +K L +DRGGEYLS  F     E  I+ QLT PGTPQ NGV+ERRN T
Sbjct: 223 FQNEVKNKLGKSIKALRSDRGGEYLSQVFSDHLRECGIVSQLTPPGTPQGNGVSERRNQT 282

Query: 207 FLEIVRSMMAQANLPISYWGDAL 275
            L++VRSMM+  +LP S+WG AL
Sbjct: 283 LLDMVRSMMSHTDLPSSFWGYAL 305


>gb|AAM74249.1|AC074355_11 Putative retroelement [Oryza sativa Japonica Group]
          Length = 700

 Score = 93.2 bits (230), Expect = 3e-17
 Identities = 48/91 (52%), Positives = 64/91 (70%)
 Frame = +3

Query: 3   EILDCFIRYLNEVEN*LERKVKNLCTDRGGEYLSD*FKTMCNEKEIIRQLTIPGTPQQNG 182
           E  + F  + NEV+N L++ +K L +DRGGEY S  F     E  I+ QLT PGTPQ NG
Sbjct: 88  ESFEKFKEFHNEVQNHLDKTIKYLRSDRGGEYWSLEFGNHLKECGIVPQLTPPGTPQLNG 147

Query: 183 VAERRNMTFLEIVRSMMAQANLPISYWGDAL 275
           V++RRN T L++VRSMM+Q +LP+S+WG AL
Sbjct: 148 VSKRRNRTLLDMVRSMMSQTDLPLSFWGYAL 178


>gb|AAP52343.2| retrotransposon protein, putative, Ty1-copia subclass [Oryza sativa
           Japonica Group]
          Length = 655

 Score = 93.2 bits (230), Expect = 3e-17
 Identities = 48/91 (52%), Positives = 64/91 (70%)
 Frame = +3

Query: 3   EILDCFIRYLNEVEN*LERKVKNLCTDRGGEYLSD*FKTMCNEKEIIRQLTIPGTPQQNG 182
           E  + F  + NEV+N L++ +K L +DRGGEY S  F     E  I+ QLT PGTPQ NG
Sbjct: 88  ESFEKFKEFHNEVQNHLDKTIKYLRSDRGGEYWSLEFGNHLKECGIVPQLTPPGTPQLNG 147

Query: 183 VAERRNMTFLEIVRSMMAQANLPISYWGDAL 275
           V++RRN T L++VRSMM+Q +LP+S+WG AL
Sbjct: 148 VSKRRNRTLLDMVRSMMSQTDLPLSFWGYAL 178


>gb|AAK70407.1|AF369930_2 pol polyprotein [Citrus x paradisi]
          Length = 701

 Score = 92.8 bits (229), Expect = 4e-17
 Identities = 45/91 (49%), Positives = 63/91 (69%)
 Frame = +3

Query: 3   EILDCFIRYLNEVEN*LERKVKNLCTDRGGEYLSD*FKTMCNEKEIIRQLTIPGTPQQNG 182
           E LD FI Y NEVEN L RK+K L +DRGGEY+   F ++C +  II Q+T P +PQ NG
Sbjct: 560 EALDKFILYKNEVENQLNRKIKELRSDRGGEYVVP-FMSLCEQSGIIHQVTAPYSPQSNG 618

Query: 183 VAERRNMTFLEIVRSMMAQANLPISYWGDAL 275
           +AER+N T  E++ +M+  + LP + WG+A+
Sbjct: 619 IAERKNRTLKEMMNAMLISSGLPQNMWGEAV 649


>gb|ABA99473.2| retrotransposon protein, putative, Ty1-copia subclass [Oryza sativa
           Japonica Group]
          Length = 1287

 Score = 92.0 bits (227), Expect = 7e-17
 Identities = 44/91 (48%), Positives = 62/91 (68%)
 Frame = +3

Query: 3   EILDCFIRYLNEVEN*LERKVKNLCTDRGGEYLSD*FKTMCNEKEIIRQLTIPGTPQQNG 182
           E LD F  Y  EVEN L+RK+K L +DRGGE+ S+ F   C E  II ++T P +P+ NG
Sbjct: 494 EALDYFKIYKAEVENQLDRKIKRLRSDRGGEFFSNEFDLFCEEHGIIHEMTPPYSPESNG 553

Query: 183 VAERRNMTFLEIVRSMMAQANLPISYWGDAL 275
           +AER+N T  ++V +M+  A LP ++WG+AL
Sbjct: 554 IAERKNRTLTDLVNAMLDTAGLPKAWWGEAL 584


>ref|XP_004301658.1| PREDICTED: uncharacterized protein LOC101293311 [Fragaria vesca
           subsp. vesca]
          Length = 1096

 Score = 90.9 bits (224), Expect = 2e-16
 Identities = 44/91 (48%), Positives = 61/91 (67%)
 Frame = +3

Query: 3   EILDCFIRYLNEVEN*LERKVKNLCTDRGGEYLSD*FKTMCNEKEIIRQLTIPGTPQQNG 182
           E+ D F  Y  EVEN LE+K+K L +DRGGEY S+     C E  II ++T P +PQ NG
Sbjct: 334 EVFDKFKVYKTEVENQLEKKIKRLRSDRGGEYTSNDLNDFCEEHGIIHEVTPPYSPQCNG 393

Query: 183 VAERRNMTFLEIVRSMMAQANLPISYWGDAL 275
           VA+R+N T L++V +M+  + LP  +WG+AL
Sbjct: 394 VAKRKNRTLLDMVNAMLLSSGLPDKWWGEAL 424


>gb|AAC26250.1| contains similarity to reverse transcriptase (Pfam: rvt.hmm, score
           19.29) [Arabidopsis thaliana] gi|7267136|emb|CAB80804.1|
           putative retrotransposon protein [Arabidopsis thaliana]
          Length = 964

 Score = 90.9 bits (224), Expect = 2e-16
 Identities = 46/86 (53%), Positives = 58/86 (67%)
 Frame = +3

Query: 18  FIRYLNEVEN*LERKVKNLCTDRGGEYLSD*FKTMCNEKEIIRQLTIPGTPQQNGVAERR 197
           F  + NEV+N   + +K L +DRGGEYLS  F     E  I+ QLT PGTPQ NGV+ERR
Sbjct: 188 FKEFQNEVQNQFGKSIKALRSDRGGEYLSQVFSDHLRECGIVSQLTPPGTPQWNGVSERR 247

Query: 198 NMTFLEIVRSMMAQANLPISYWGDAL 275
           N T L++VRSMM+  +LP  +WG AL
Sbjct: 248 NRTLLDMVRSMMSHTDLPSPFWGYAL 273


>emb|CAN66710.1| hypothetical protein VITISV_006397 [Vitis vinifera]
          Length = 1105

 Score = 90.9 bits (224), Expect = 2e-16
 Identities = 45/91 (49%), Positives = 58/91 (63%)
 Frame = +3

Query: 3   EILDCFIRYLNEVEN*LERKVKNLCTDRGGEYLSD*FKTMCNEKEIIRQLTIPGTPQQNG 182
           E  + F  Y  EVEN L + +K L +DRGGEY S  F + C E  II + T P TPQ NG
Sbjct: 333 ETFNAFKVYKTEVENQLGKNIKVLRSDRGGEYFSSEFNSFCEEYGIIHECTAPYTPQHNG 392

Query: 183 VAERRNMTFLEIVRSMMAQANLPISYWGDAL 275
           +AER+N TFLE+V +M+  A L  + WG+AL
Sbjct: 393 IAERKNRTFLEMVNAMLLHAKLNFNLWGEAL 423


>emb|CAN66959.1| hypothetical protein VITISV_013138 [Vitis vinifera]
          Length = 1234

 Score = 90.9 bits (224), Expect = 2e-16
 Identities = 45/91 (49%), Positives = 58/91 (63%)
 Frame = +3

Query: 3   EILDCFIRYLNEVEN*LERKVKNLCTDRGGEYLSD*FKTMCNEKEIIRQLTIPGTPQQNG 182
           E  + F  Y  EVEN L + +K L +DRGGEY S  F + C E  II + T P TPQ NG
Sbjct: 518 ETFNAFKVYKTEVENQLGKNIKVLRSDRGGEYFSSEFNSFCEEYGIIHECTAPYTPQHNG 577

Query: 183 VAERRNMTFLEIVRSMMAQANLPISYWGDAL 275
           +AER+N TFLE+V +M+  A L  + WG+AL
Sbjct: 578 IAERKNRTFLEMVNAMLLHAKLNFNLWGEAL 608


>gb|AAV43866.1| putative polyprotein [Oryza sativa Japonica Group]
           gi|55168291|gb|AAV44157.1| putative polyprotein [Oryza
           sativa Japonica Group]
          Length = 1046

 Score = 90.9 bits (224), Expect = 2e-16
 Identities = 44/91 (48%), Positives = 61/91 (67%)
 Frame = +3

Query: 3   EILDCFIRYLNEVEN*LERKVKNLCTDRGGEYLSD*FKTMCNEKEIIRQLTIPGTPQQNG 182
           E LD F  Y  EVEN L+RK+K L +DRGGE+ S+ F   C E  II + T P +P+ NG
Sbjct: 277 EALDYFKIYKAEVENQLDRKIKRLWSDRGGEFFSNEFDLFCKEHGIIHERTPPYSPESNG 336

Query: 183 VAERRNMTFLEIVRSMMAQANLPISYWGDAL 275
           +AER+N T  ++V +M+  A LP ++WG+AL
Sbjct: 337 IAERKNRTLTDLVNAMLDTAGLPKAWWGEAL 367


>ref|XP_004978922.1| PREDICTED: uncharacterized protein LOC101776990, partial [Setaria
           italica]
          Length = 1686

 Score = 90.5 bits (223), Expect = 2e-16
 Identities = 45/78 (57%), Positives = 58/78 (74%)
 Frame = +3

Query: 42  EN*LERKVKNLCTDRGGEYLSD*FKTMCNEKEIIRQLTIPGTPQQNGVAERRNMTFLEIV 221
           EN   +K+K L +DRGGEYLS  F        I+ QLT PGTPQ+NGV+ERRN T L++V
Sbjct: 1   ENQRGKKIKALRSDRGGEYLSHEFSNHLKSCGIVPQLTPPGTPQRNGVSERRNRTLLDMV 60

Query: 222 RSMMAQANLPISYWGDAL 275
           RSMM+Q++LP+S+WG AL
Sbjct: 61  RSMMSQSDLPLSFWGYAL 78


>gb|EMT27510.1| hypothetical protein F775_52220 [Aegilops tauschii]
          Length = 1712

 Score = 90.5 bits (223), Expect = 2e-16
 Identities = 49/91 (53%), Positives = 61/91 (67%)
 Frame = +3

Query: 3   EILDCFIRYLNEVEN*LERKVKNLCTDRGGEYLSD*FKTMCNEKEIIRQLTIPGTPQQNG 182
           E  + F  + +EVEN   +K+K L  DRGGEYLS  F     +  II QLT PGTPQ NG
Sbjct: 79  ETFEKFKEFQSEVENHRNKKIKFLRFDRGGEYLSYEFGLHLKQCGIISQLTPPGTPQCNG 138

Query: 183 VAERRNMTFLEIVRSMMAQANLPISYWGDAL 275
           V+E RN T L+IVRSMM+  +LP+S+WG AL
Sbjct: 139 VSEHRNRTLLDIVRSMMSLTDLPLSFWGYAL 169


>gb|AAO60021.1| putative polyprotein [Oryza sativa Japonica Group]
           gi|108711758|gb|ABF99553.1| retrotransposon protein,
           putative, Ty1-copia subclass [Oryza sativa Japonica
           Group]
          Length = 1224

 Score = 90.5 bits (223), Expect = 2e-16
 Identities = 44/91 (48%), Positives = 61/91 (67%)
 Frame = +3

Query: 3   EILDCFIRYLNEVEN*LERKVKNLCTDRGGEYLSD*FKTMCNEKEIIRQLTIPGTPQQNG 182
           E LD F  Y  EVEN L+RK+K L +DRGGE+ S+ F   C E  II + T P +P+ NG
Sbjct: 455 EALDYFKIYKAEVENQLDRKIKRLRSDRGGEFFSNEFDLFCEEHGIIHERTPPYSPESNG 514

Query: 183 VAERRNMTFLEIVRSMMAQANLPISYWGDAL 275
           +AER+N T  ++V +M+  A LP ++WG+AL
Sbjct: 515 IAERKNRTLTDLVNAMLDTAGLPKAWWGEAL 545


>gb|AAN61480.1| Putative polyprotein from transposon TNT [Oryza sativa Japonica
           Group]
          Length = 1911

 Score = 90.5 bits (223), Expect = 2e-16
 Identities = 44/91 (48%), Positives = 61/91 (67%)
 Frame = +3

Query: 3   EILDCFIRYLNEVEN*LERKVKNLCTDRGGEYLSD*FKTMCNEKEIIRQLTIPGTPQQNG 182
           E LD F  Y  EVEN L+RK+K L +DRGGE+ S+ F   C E  II + T P +P+ NG
Sbjct: 533 EALDYFKIYKAEVENQLDRKIKRLRSDRGGEFFSNEFDLFCEEHGIIHERTPPYSPESNG 592

Query: 183 VAERRNMTFLEIVRSMMAQANLPISYWGDAL 275
           +AER+N T  ++V +M+  A LP ++WG+AL
Sbjct: 593 IAERKNRTLTDLVNAMLDTAGLPKAWWGEAL 623


>gb|ABA95768.1| retrotransposon protein, putative, Ty1-copia subclass [Oryza sativa
           Japonica Group]
          Length = 1151

 Score = 90.5 bits (223), Expect = 2e-16
 Identities = 44/91 (48%), Positives = 61/91 (67%)
 Frame = +3

Query: 3   EILDCFIRYLNEVEN*LERKVKNLCTDRGGEYLSD*FKTMCNEKEIIRQLTIPGTPQQNG 182
           E LD F  Y  EVEN L+RK+K L +DRGGE+ S+ F   C E  II + T P +P+ NG
Sbjct: 404 EALDYFKIYKAEVENQLDRKIKRLRSDRGGEFFSNEFDLFCEEHGIIHERTPPYSPESNG 463

Query: 183 VAERRNMTFLEIVRSMMAQANLPISYWGDAL 275
           +AER+N T  ++V +M+  A LP ++WG+AL
Sbjct: 464 IAERKNRTLTDLVNAMLDTAGLPKAWWGEAL 494


>gb|ABA96779.1| retrotransposon protein, putative, Ty1-copia subclass [Oryza sativa
           Japonica Group]
          Length = 1468

 Score = 90.5 bits (223), Expect = 2e-16
 Identities = 44/91 (48%), Positives = 61/91 (67%)
 Frame = +3

Query: 3   EILDCFIRYLNEVEN*LERKVKNLCTDRGGEYLSD*FKTMCNEKEIIRQLTIPGTPQQNG 182
           E LD F  Y  EVEN L+RK+K L +DRGGE+ S+ F   C E  II + T P +P+ NG
Sbjct: 620 EALDYFKIYKAEVENQLDRKIKRLRSDRGGEFFSNEFDLFCEEHGIIHERTPPYSPESNG 679

Query: 183 VAERRNMTFLEIVRSMMAQANLPISYWGDAL 275
           +AER+N T  ++V +M+  A LP ++WG+AL
Sbjct: 680 IAERKNRTLTDLVNAMLDTAGLPKTWWGEAL 710