BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Zingiber23_contig00054360
         (312 letters)

Database: ./nr 
           37,332,560 sequences; 13,225,080,153 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

ref|XP_002266689.1| PREDICTED: pentatricopeptide repeat-containi...    70   4e-10
gb|EOY31979.1| Pentatricopeptide repeat superfamily protein isof...    67   2e-09
gb|EOY31976.1| Pentatricopeptide repeat superfamily protein isof...    67   2e-09
ref|XP_004297893.1| PREDICTED: pentatricopeptide repeat-containi...    66   5e-09
gb|EMJ15830.1| hypothetical protein PRUPE_ppa002950mg [Prunus pe...    64   3e-08
ref|XP_004163029.1| PREDICTED: pentatricopeptide repeat-containi...    62   8e-08
ref|XP_004148338.1| PREDICTED: pentatricopeptide repeat-containi...    62   8e-08
ref|XP_002532091.1| pentatricopeptide repeat-containing protein,...    61   1e-07
gb|EXC36735.1| hypothetical protein L484_000436 [Morus notabilis]      58   1e-06
ref|XP_006366836.1| PREDICTED: pentatricopeptide repeat-containi...    58   1e-06
ref|XP_004487967.1| PREDICTED: pentatricopeptide repeat-containi...    58   1e-06
ref|XP_004242848.1| PREDICTED: pentatricopeptide repeat-containi...    57   2e-06
ref|XP_002318172.1| pentatricopeptide repeat-containing family p...    57   3e-06
gb|ABD33369.1| Tetratricopeptide-like helical [Medicago truncatula]    57   3e-06
ref|XP_003594983.1| Pentatricopeptide repeat-containing protein ...    57   3e-06
ref|XP_006474640.1| PREDICTED: pentatricopeptide repeat-containi...    55   7e-06
ref|XP_006453289.1| hypothetical protein CICLE_v10010788mg, part...    55   7e-06

>ref|XP_002266689.1| PREDICTED: pentatricopeptide repeat-containing protein At2g34400
           [Vitis vinifera] gi|296090299|emb|CBI40118.3| unnamed
           protein product [Vitis vinifera]
          Length = 618

 Score = 69.7 bits (169), Expect = 4e-10
 Identities = 33/81 (40%), Positives = 47/81 (58%)
 Frame = +2

Query: 62  ILSLLKQCTTLRCFKQIHAHMLTLAVRKPNDXXXXXXXXXXXXXXXXXFSQNPRPNDFSF 241
           +LSLLKQCT+ +  +QIH  M+  A+ KPN                  FSQ P PN+++F
Sbjct: 34  LLSLLKQCTSTKSLQQIHTQMIINAIHKPNFLLHRFIDLKDFNNASLLFSQIPYPNEYAF 93

Query: 242 NLVIRALVTLYSRFPLALEFY 304
           N++IR L T + +F L +EFY
Sbjct: 94  NIMIRGLTTTWQKFNLTIEFY 114


>gb|EOY31979.1| Pentatricopeptide repeat superfamily protein isoform 4 [Theobroma
           cacao] gi|508784726|gb|EOY31982.1| Pentatricopeptide
           repeat superfamily protein isoform 4 [Theobroma cacao]
          Length = 619

 Score = 67.0 bits (162), Expect = 2e-09
 Identities = 31/81 (38%), Positives = 47/81 (58%)
 Frame = +2

Query: 62  ILSLLKQCTTLRCFKQIHAHMLTLAVRKPNDXXXXXXXXXXXXXXXXXFSQNPRPNDFSF 241
           +LS LK+CT+++  +QIHA ML  +++KPN                  FSQ P+PND++F
Sbjct: 35  LLSFLKKCTSIKLLQQIHAQMLINSIQKPNFLLSKIIDLNNFAYASLLFSQIPQPNDYAF 94

Query: 242 NLVIRALVTLYSRFPLALEFY 304
           N++IR L T +  +   L FY
Sbjct: 95  NVMIRGLTTTWQHYSTTLHFY 115


>gb|EOY31976.1| Pentatricopeptide repeat superfamily protein isoform 1 [Theobroma
           cacao]
          Length = 656

 Score = 67.0 bits (162), Expect = 2e-09
 Identities = 31/81 (38%), Positives = 47/81 (58%)
 Frame = +2

Query: 62  ILSLLKQCTTLRCFKQIHAHMLTLAVRKPNDXXXXXXXXXXXXXXXXXFSQNPRPNDFSF 241
           +LS LK+CT+++  +QIHA ML  +++KPN                  FSQ P+PND++F
Sbjct: 72  LLSFLKKCTSIKLLQQIHAQMLINSIQKPNFLLSKIIDLNNFAYASLLFSQIPQPNDYAF 131

Query: 242 NLVIRALVTLYSRFPLALEFY 304
           N++IR L T +  +   L FY
Sbjct: 132 NVMIRGLTTTWQHYSTTLHFY 152


>ref|XP_004297893.1| PREDICTED: pentatricopeptide repeat-containing protein
           At2g34400-like [Fragaria vesca subsp. vesca]
          Length = 609

 Score = 65.9 bits (159), Expect = 5e-09
 Identities = 31/83 (37%), Positives = 46/83 (55%)
 Frame = +2

Query: 62  ILSLLKQCTTLRCFKQIHAHMLTLAVRKPNDXXXXXXXXXXXXXXXXXFSQNPRPNDFSF 241
           +L LLKQC +++  KQIH  ML  ++ KPN                  FSQ P PN ++F
Sbjct: 29  LLHLLKQCLSIKELKQIHTQMLINSIHKPNFLLPKLIDFQDFPYASTLFSQIPEPNSYAF 88

Query: 242 NLVIRALVTLYSRFPLALEFYLR 310
           N+++R L T + ++PL+L  Y R
Sbjct: 89  NVMLRGLTTTWHKYPLSLHLYYR 111


>gb|EMJ15830.1| hypothetical protein PRUPE_ppa002950mg [Prunus persica]
          Length = 619

 Score = 63.5 bits (153), Expect = 3e-08
 Identities = 31/81 (38%), Positives = 43/81 (53%)
 Frame = +2

Query: 62  ILSLLKQCTTLRCFKQIHAHMLTLAVRKPNDXXXXXXXXXXXXXXXXXFSQNPRPNDFSF 241
           +L LLK C + +  KQIH  ML  ++ KPN                  FS  P PND++F
Sbjct: 39  LLYLLKHCVSTKELKQIHTQMLINSIHKPNFLLPKIVDLKDFSYASMLFSHIPEPNDYAF 98

Query: 242 NLVIRALVTLYSRFPLALEFY 304
           N++IR L T + ++ L LEFY
Sbjct: 99  NIMIRGLTTTWHKYQLTLEFY 119


>ref|XP_004163029.1| PREDICTED: pentatricopeptide repeat-containing protein
           At2g34400-like [Cucumis sativus]
          Length = 619

 Score = 62.0 bits (149), Expect = 8e-08
 Identities = 32/81 (39%), Positives = 46/81 (56%)
 Frame = +2

Query: 68  SLLKQCTTLRCFKQIHAHMLTLAVRKPNDXXXXXXXXXXXXXXXXXFSQNPRPNDFSFNL 247
           SLL+QC +++  KQIHA +LT ++ KPN                  FS    P ++SFN+
Sbjct: 37  SLLQQCLSIKQLKQIHAQLLTNSIHKPNSFLYKIADLKDFAYASVFFSNILDPTEYSFNV 96

Query: 248 VIRALVTLYSRFPLALEFYLR 310
           +IR L T +++  LALEFY R
Sbjct: 97  MIRGLSTAWNKSSLALEFYSR 117


>ref|XP_004148338.1| PREDICTED: pentatricopeptide repeat-containing protein
           At2g34400-like [Cucumis sativus]
          Length = 619

 Score = 62.0 bits (149), Expect = 8e-08
 Identities = 32/81 (39%), Positives = 46/81 (56%)
 Frame = +2

Query: 68  SLLKQCTTLRCFKQIHAHMLTLAVRKPNDXXXXXXXXXXXXXXXXXFSQNPRPNDFSFNL 247
           SLL+QC +++  KQIHA +LT ++ KPN                  FS    P ++SFN+
Sbjct: 37  SLLQQCLSIKQLKQIHAQLLTNSIHKPNSFLYKIADLKDFAYASVFFSNILDPTEYSFNV 96

Query: 248 VIRALVTLYSRFPLALEFYLR 310
           +IR L T +++  LALEFY R
Sbjct: 97  MIRGLSTAWNKSSLALEFYSR 117


>ref|XP_002532091.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis] gi|223528238|gb|EEF30293.1| pentatricopeptide
           repeat-containing protein, putative [Ricinus communis]
          Length = 446

 Score = 61.2 bits (147), Expect = 1e-07
 Identities = 29/81 (35%), Positives = 45/81 (55%)
 Frame = +2

Query: 62  ILSLLKQCTTLRCFKQIHAHMLTLAVRKPNDXXXXXXXXXXXXXXXXXFSQNPRPNDFSF 241
           +L LLKQC + +  +QIHA M+  ++ KPN                  F+Q P PND++F
Sbjct: 35  LLKLLKQCRSKKPMQQIHAQMIINSLSKPNFLLPRIIDLKDFAYASLLFTQMPNPNDYAF 94

Query: 242 NLVIRALVTLYSRFPLALEFY 304
           N++IR L T +  + LA++ Y
Sbjct: 95  NVMIRGLTTTWRNYSLAIQLY 115


>gb|EXC36735.1| hypothetical protein L484_000436 [Morus notabilis]
          Length = 311

 Score = 58.2 bits (139), Expect = 1e-06
 Identities = 28/81 (34%), Positives = 45/81 (55%)
 Frame = +2

Query: 62  ILSLLKQCTTLRCFKQIHAHMLTLAVRKPNDXXXXXXXXXXXXXXXXXFSQNPRPNDFSF 241
           +LS LK+C +++  +QI   ML  ++ KPN                  F+  P PND++F
Sbjct: 43  LLSHLKKCISIKQLQQIQTQMLINSIHKPNFLLSKAIDLKSFAYASALFAHIPEPNDYAF 102

Query: 242 NLVIRALVTLYSRFPLALEFY 304
           N++IR L T + ++ LALEF+
Sbjct: 103 NVMIRGLTTTWQKYGLALEFH 123


>ref|XP_006366836.1| PREDICTED: pentatricopeptide repeat-containing protein
           At2g34400-like [Solanum tuberosum]
          Length = 622

 Score = 58.2 bits (139), Expect = 1e-06
 Identities = 29/81 (35%), Positives = 44/81 (54%)
 Frame = +2

Query: 62  ILSLLKQCTTLRCFKQIHAHMLTLAVRKPNDXXXXXXXXXXXXXXXXXFSQNPRPNDFSF 241
           +L LLK+C T++  +QIH  ML  ++ K N                  FS    PN+++F
Sbjct: 38  LLFLLKKCITIKQVQQIHTQMLICSIDKANYLLSRIIDLKNFDYASLLFSHIHSPNEYAF 97

Query: 242 NLVIRALVTLYSRFPLALEFY 304
           N++IR L T + +F L+LEFY
Sbjct: 98  NIMIRGLTTTWQKFDLSLEFY 118


>ref|XP_004487967.1| PREDICTED: pentatricopeptide repeat-containing protein
           At2g34400-like [Cicer arietinum]
          Length = 609

 Score = 58.2 bits (139), Expect = 1e-06
 Identities = 28/82 (34%), Positives = 43/82 (52%), Gaps = 1/82 (1%)
 Frame = +2

Query: 62  ILSLLKQCTTLRCFKQIHAHMLTLAVRKPNDXXXXXXXXXXXXXXXXXFSQ-NPRPNDFS 238
           +LSL+KQC++ +  +QIH  M+  ++  PN                  FS   P PN+FS
Sbjct: 24  LLSLVKQCSSTKTLQQIHTQMIINSIHTPNHLLSQSITLKDFNYSSLIFSHITPHPNNFS 83

Query: 239 FNLVIRALVTLYSRFPLALEFY 304
           FN+++RA  T +  +PL L  Y
Sbjct: 84  FNIMLRATTTTWHNYPLTLHLY 105


>ref|XP_004242848.1| PREDICTED: pentatricopeptide repeat-containing protein
           At2g34400-like isoform 1 [Solanum lycopersicum]
           gi|460394517|ref|XP_004242849.1| PREDICTED:
           pentatricopeptide repeat-containing protein
           At2g34400-like isoform 2 [Solanum lycopersicum]
          Length = 622

 Score = 57.4 bits (137), Expect = 2e-06
 Identities = 29/81 (35%), Positives = 44/81 (54%)
 Frame = +2

Query: 62  ILSLLKQCTTLRCFKQIHAHMLTLAVRKPNDXXXXXXXXXXXXXXXXXFSQNPRPNDFSF 241
           +L LLK+C T++  +Q HA ML  ++ K N                  FS    PN+++F
Sbjct: 38  LLFLLKKCITIKQVQQSHAQMLIYSIDKANFLLSRIIDLKNFDYATLLFSHIHSPNEYAF 97

Query: 242 NLVIRALVTLYSRFPLALEFY 304
           N++IR L T + +F L+LEFY
Sbjct: 98  NIMIRGLTTTWQKFDLSLEFY 118


>ref|XP_002318172.1| pentatricopeptide repeat-containing family protein [Populus
           trichocarpa] gi|222858845|gb|EEE96392.1|
           pentatricopeptide repeat-containing family protein
           [Populus trichocarpa]
          Length = 617

 Score = 57.0 bits (136), Expect = 3e-06
 Identities = 27/83 (32%), Positives = 44/83 (53%)
 Frame = +2

Query: 62  ILSLLKQCTTLRCFKQIHAHMLTLAVRKPNDXXXXXXXXXXXXXXXXXFSQNPRPNDFSF 241
           +LSL+KQC +    KQIHA ML  ++ KPN                  F+Q  +PN ++F
Sbjct: 36  LLSLIKQCKSKNLLKQIHAQMLINSIPKPNFLLSKIIDLKDLAYASLVFNQLTKPNIYAF 95

Query: 242 NLVIRALVTLYSRFPLALEFYLR 310
           N+++R L T + ++   +E Y +
Sbjct: 96  NVMLRGLATTWKKYDFCVELYYK 118


>gb|ABD33369.1| Tetratricopeptide-like helical [Medicago truncatula]
          Length = 609

 Score = 56.6 bits (135), Expect = 3e-06
 Identities = 28/82 (34%), Positives = 41/82 (50%), Gaps = 1/82 (1%)
 Frame = +2

Query: 62  ILSLLKQCTTLRCFKQIHAHMLTLAVRKPNDXXXXXXXXXXXXXXXXXFSQ-NPRPNDFS 238
           +LSLLKQC + +  +QIH      ++ KPN                  FS   P PND++
Sbjct: 24  LLSLLKQCPSTKTLQQIHTQFTIHSIHKPNHLLSQSISLKDFTYSTLIFSHITPHPNDYA 83

Query: 239 FNLVIRALVTLYSRFPLALEFY 304
           FN+++RA  T +  +PL L  Y
Sbjct: 84  FNIMLRATTTTWHDYPLTLHLY 105


>ref|XP_003594983.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
           gi|355484031|gb|AES65234.1| Pentatricopeptide
           repeat-containing protein [Medicago truncatula]
          Length = 702

 Score = 56.6 bits (135), Expect = 3e-06
 Identities = 28/82 (34%), Positives = 41/82 (50%), Gaps = 1/82 (1%)
 Frame = +2

Query: 62  ILSLLKQCTTLRCFKQIHAHMLTLAVRKPNDXXXXXXXXXXXXXXXXXFSQ-NPRPNDFS 238
           +LSLLKQC + +  +QIH      ++ KPN                  FS   P PND++
Sbjct: 24  LLSLLKQCPSTKTLQQIHTQFTIHSIHKPNHLLSQSISLKDFTYSTLIFSHITPHPNDYA 83

Query: 239 FNLVIRALVTLYSRFPLALEFY 304
           FN+++RA  T +  +PL L  Y
Sbjct: 84  FNIMLRATTTTWHDYPLTLHLY 105


>ref|XP_006474640.1| PREDICTED: pentatricopeptide repeat-containing protein
           At2g34400-like [Citrus sinensis]
          Length = 580

 Score = 55.5 bits (132), Expect = 7e-06
 Identities = 27/81 (33%), Positives = 44/81 (54%)
 Frame = +2

Query: 62  ILSLLKQCTTLRCFKQIHAHMLTLAVRKPNDXXXXXXXXXXXXXXXXXFSQNPRPNDFSF 241
           +LSLLK+C + +  +QIH  ML   ++KPN                  F Q  RPN+++F
Sbjct: 30  LLSLLKKCPSTKTVQQIHTQMLINFIQKPNFLLIRIIDLKDFNYASLLFHQISRPNEYAF 89

Query: 242 NLVIRALVTLYSRFPLALEFY 304
           N++IR L T + ++  +L+ Y
Sbjct: 90  NVMIRGLTTAWQKYSHSLKLY 110


>ref|XP_006453289.1| hypothetical protein CICLE_v10010788mg, partial [Citrus clementina]
           gi|557556515|gb|ESR66529.1| hypothetical protein
           CICLE_v10010788mg, partial [Citrus clementina]
          Length = 572

 Score = 55.5 bits (132), Expect = 7e-06
 Identities = 27/81 (33%), Positives = 44/81 (54%)
 Frame = +2

Query: 62  ILSLLKQCTTLRCFKQIHAHMLTLAVRKPNDXXXXXXXXXXXXXXXXXFSQNPRPNDFSF 241
           +LSLLK+C + +  +QIH  ML   ++KPN                  F Q  RPN+++F
Sbjct: 27  LLSLLKKCPSTKTVQQIHTQMLINFIQKPNFLLIRIIDLKDFNYASLLFHQISRPNEYAF 86

Query: 242 NLVIRALVTLYSRFPLALEFY 304
           N++IR L T + ++  +L+ Y
Sbjct: 87  NVMIRGLTTAWQKYSHSLKLY 107