BLASTX nr result
ID: Zingiber23_contig00053819
seq
BLASTX 2.2.25 [Feb-01-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= Zingiber23_contig00053819
(310 letters)
Database: ./nr
37,332,560 sequences; 13,225,080,153 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gb|EMT22317.1| DNA-directed RNA polymerase III subunit RPC1 [Aeg... 98 1e-18
gb|EMS66983.1| DNA-directed RNA polymerase D subunit 1 [Triticum... 97 3e-18
ref|XP_004970758.1| PREDICTED: DNA-directed RNA polymerase D sub... 96 4e-18
ref|XP_004970756.1| PREDICTED: DNA-directed RNA polymerase D sub... 96 4e-18
ref|XP_004970755.1| PREDICTED: DNA-directed RNA polymerase D sub... 96 4e-18
ref|XP_004970754.1| PREDICTED: DNA-directed RNA polymerase D sub... 96 4e-18
ref|XP_002446962.1| hypothetical protein SORBIDRAFT_06g025933 [S... 96 4e-18
gb|ACL30982.1| mutant DNA dependent RNA polymerase D largest sub... 96 5e-18
gb|ACL30980.1| mutant DNA dependent RNA polymerase D largest sub... 96 5e-18
ref|NP_001182824.1| DNA dependent RNA polymerase D largest subun... 96 5e-18
ref|XP_006653694.1| PREDICTED: DNA-directed RNA polymerase IV su... 94 2e-17
gb|EEC77828.1| hypothetical protein OsI_17044 [Oryza sativa Indi... 92 7e-17
emb|CAH66955.1| OSIGBa0147H17.3 [Oryza sativa Indica Group] 92 7e-17
ref|XP_006661522.1| PREDICTED: DNA-directed RNA polymerase IV su... 91 1e-16
emb|CAD41657.3| OSJNBa0019K04.4 [Oryza sativa Japonica Group] 91 2e-16
ref|XP_002509696.1| DNA-directed RNA polymerase, putative [Ricin... 91 2e-16
gb|EEE61535.1| hypothetical protein OsJ_15844 [Oryza sativa Japo... 91 2e-16
gb|EEE70198.1| hypothetical protein OsJ_30285 [Oryza sativa Japo... 90 3e-16
gb|EEC85033.1| hypothetical protein OsI_32338 [Oryza sativa Indi... 90 3e-16
gb|EMJ12114.1| hypothetical protein PRUPE_ppa000278mg [Prunus pe... 89 6e-16
>gb|EMT22317.1| DNA-directed RNA polymerase III subunit RPC1 [Aegilops tauschii]
Length = 1334
Score = 98.2 bits (243), Expect = 1e-18
Identities = 47/91 (51%), Positives = 60/91 (65%)
Frame = +1
Query: 37 EDSKSTSGLRWMKDVVLSKRSDNAFRLTMVGDPKISTNEIGIPHCMSRKLTVPEHVNAYN 216
E S T G++W+KD +LSKRSDNAFR TMVGDPKI +EIGIP ++ L V EHVN+YN
Sbjct: 273 ESSTDTHGMKWLKDAILSKRSDNAFRGTMVGDPKIRLHEIGIPVDLASNLVVSEHVNSYN 332
Query: 217 IEKLNMVCNLRLLAYMCYTLPGEGFLVKSKG 309
+ +N+ CN CY L E ++K G
Sbjct: 333 FDNINLKCN-------CYLLANEKLVIKRSG 356
>gb|EMS66983.1| DNA-directed RNA polymerase D subunit 1 [Triticum urartu]
Length = 1402
Score = 96.7 bits (239), Expect = 3e-18
Identities = 47/91 (51%), Positives = 59/91 (64%)
Frame = +1
Query: 37 EDSKSTSGLRWMKDVVLSKRSDNAFRLTMVGDPKISTNEIGIPHCMSRKLTVPEHVNAYN 216
E S T G++W+KD +LSKRSDNAFR TMVGDPKI +EIGIP ++ L V EHVN+YN
Sbjct: 309 ESSTDTHGMKWLKDAILSKRSDNAFRGTMVGDPKIRLHEIGIPVDLASNLLVSEHVNSYN 368
Query: 217 IEKLNMVCNLRLLAYMCYTLPGEGFLVKSKG 309
+ +N CN CY L E ++K G
Sbjct: 369 FDSINSKCN-------CYLLANEKLVIKRSG 392
>ref|XP_004970758.1| PREDICTED: DNA-directed RNA polymerase D subunit 1-like isoform X5
[Setaria italica]
Length = 1181
Score = 96.3 bits (238), Expect = 4e-18
Identities = 47/84 (55%), Positives = 58/84 (69%)
Frame = +1
Query: 7 SKFRAPNPSNEDSKSTSGLRWMKDVVLSKRSDNAFRLTMVGDPKISTNEIGIPHCMSRKL 186
SK + E S T G++W+KD VLSKRSDNAFR MVGDPKI EIGIP ++ L
Sbjct: 36 SKLYSKKTDVETSTDTYGMKWLKDAVLSKRSDNAFRSIMVGDPKIRLWEIGIPENLASNL 95
Query: 187 TVPEHVNAYNIEKLNMVCNLRLLA 258
V EHV++YN+E +N+ CNL LLA
Sbjct: 96 VVSEHVSSYNLENINLKCNLHLLA 119
>ref|XP_004970756.1| PREDICTED: DNA-directed RNA polymerase D subunit 1-like isoform X3
[Setaria italica]
Length = 1362
Score = 96.3 bits (238), Expect = 4e-18
Identities = 47/84 (55%), Positives = 58/84 (69%)
Frame = +1
Query: 7 SKFRAPNPSNEDSKSTSGLRWMKDVVLSKRSDNAFRLTMVGDPKISTNEIGIPHCMSRKL 186
SK + E S T G++W+KD VLSKRSDNAFR MVGDPKI EIGIP ++ L
Sbjct: 217 SKLYSKKTDVETSTDTYGMKWLKDAVLSKRSDNAFRSIMVGDPKIRLWEIGIPENLASNL 276
Query: 187 TVPEHVNAYNIEKLNMVCNLRLLA 258
V EHV++YN+E +N+ CNL LLA
Sbjct: 277 VVSEHVSSYNLENINLKCNLHLLA 300
>ref|XP_004970755.1| PREDICTED: DNA-directed RNA polymerase D subunit 1-like isoform X2
[Setaria italica]
Length = 1450
Score = 96.3 bits (238), Expect = 4e-18
Identities = 47/84 (55%), Positives = 58/84 (69%)
Frame = +1
Query: 7 SKFRAPNPSNEDSKSTSGLRWMKDVVLSKRSDNAFRLTMVGDPKISTNEIGIPHCMSRKL 186
SK + E S T G++W+KD VLSKRSDNAFR MVGDPKI EIGIP ++ L
Sbjct: 305 SKLYSKKTDVETSTDTYGMKWLKDAVLSKRSDNAFRSIMVGDPKIRLWEIGIPENLASNL 364
Query: 187 TVPEHVNAYNIEKLNMVCNLRLLA 258
V EHV++YN+E +N+ CNL LLA
Sbjct: 365 VVSEHVSSYNLENINLKCNLHLLA 388
>ref|XP_004970754.1| PREDICTED: DNA-directed RNA polymerase D subunit 1-like isoform X1
[Setaria italica] gi|514785102|ref|XP_004970757.1|
PREDICTED: DNA-directed RNA polymerase D subunit 1-like
isoform X4 [Setaria italica]
Length = 1451
Score = 96.3 bits (238), Expect = 4e-18
Identities = 47/84 (55%), Positives = 58/84 (69%)
Frame = +1
Query: 7 SKFRAPNPSNEDSKSTSGLRWMKDVVLSKRSDNAFRLTMVGDPKISTNEIGIPHCMSRKL 186
SK + E S T G++W+KD VLSKRSDNAFR MVGDPKI EIGIP ++ L
Sbjct: 306 SKLYSKKTDVETSTDTYGMKWLKDAVLSKRSDNAFRSIMVGDPKIRLWEIGIPENLASNL 365
Query: 187 TVPEHVNAYNIEKLNMVCNLRLLA 258
V EHV++YN+E +N+ CNL LLA
Sbjct: 366 VVSEHVSSYNLENINLKCNLHLLA 389
>ref|XP_002446962.1| hypothetical protein SORBIDRAFT_06g025933 [Sorghum bicolor]
gi|241938145|gb|EES11290.1| hypothetical protein
SORBIDRAFT_06g025933 [Sorghum bicolor]
Length = 1203
Score = 96.3 bits (238), Expect = 4e-18
Identities = 45/73 (61%), Positives = 54/73 (73%)
Frame = +1
Query: 37 EDSKSTSGLRWMKDVVLSKRSDNAFRLTMVGDPKISTNEIGIPHCMSRKLTVPEHVNAYN 216
E S SG++W+KD VLSKRSDNAFR TMVGDPKI EIGIP ++ L V +HVN+YN
Sbjct: 255 ETSTDPSGMKWLKDAVLSKRSDNAFRSTMVGDPKIKLWEIGIPEDLASNLVVSDHVNSYN 314
Query: 217 IEKLNMVCNLRLL 255
E +N+ CNL LL
Sbjct: 315 FENINLKCNLHLL 327
>gb|ACL30982.1| mutant DNA dependent RNA polymerase D largest subunit rpd1-8 [Zea
mays]
Length = 1444
Score = 95.9 bits (237), Expect = 5e-18
Identities = 47/84 (55%), Positives = 56/84 (66%)
Frame = +1
Query: 7 SKFRAPNPSNEDSKSTSGLRWMKDVVLSKRSDNAFRLTMVGDPKISTNEIGIPHCMSRKL 186
SK + E S T G++W+KDVVLSKRSDN FR MVGDPKI EIGIP +S L
Sbjct: 306 SKLYSKKADGETSTDTYGMKWLKDVVLSKRSDNVFRSIMVGDPKIKLWEIGIPEDLSSSL 365
Query: 187 TVPEHVNAYNIEKLNMVCNLRLLA 258
V EHV++YN + N+ CNL LLA
Sbjct: 366 VVSEHVSSYNFQSTNLKCNLHLLA 389
>gb|ACL30980.1| mutant DNA dependent RNA polymerase D largest subunit rpd1-1 [Zea
mays]
Length = 871
Score = 95.9 bits (237), Expect = 5e-18
Identities = 47/84 (55%), Positives = 56/84 (66%)
Frame = +1
Query: 7 SKFRAPNPSNEDSKSTSGLRWMKDVVLSKRSDNAFRLTMVGDPKISTNEIGIPHCMSRKL 186
SK + E S T G++W+KDVVLSKRSDN FR MVGDPKI EIGIP +S L
Sbjct: 306 SKLYSKKADGETSTDTYGMKWLKDVVLSKRSDNVFRSIMVGDPKIKLWEIGIPEDLSSSL 365
Query: 187 TVPEHVNAYNIEKLNMVCNLRLLA 258
V EHV++YN + N+ CNL LLA
Sbjct: 366 VVSEHVSSYNFQSTNLKCNLHLLA 389
>ref|NP_001182824.1| DNA dependent RNA polymerase D largest subunit [Zea mays]
gi|219662980|gb|ACL30979.1| DNA dependent RNA polymerase
D largest subunit [Zea mays]
gi|414869425|tpg|DAA47982.1| TPA: putative DNA dependent
RNA polymerase D largest subunit family protein [Zea
mays] gi|414869426|tpg|DAA47983.1| TPA: putative DNA
dependent RNA polymerase D largest subunit family
protein [Zea mays]
Length = 1444
Score = 95.9 bits (237), Expect = 5e-18
Identities = 47/84 (55%), Positives = 56/84 (66%)
Frame = +1
Query: 7 SKFRAPNPSNEDSKSTSGLRWMKDVVLSKRSDNAFRLTMVGDPKISTNEIGIPHCMSRKL 186
SK + E S T G++W+KDVVLSKRSDN FR MVGDPKI EIGIP +S L
Sbjct: 306 SKLYSKKADGETSTDTYGMKWLKDVVLSKRSDNVFRSIMVGDPKIKLWEIGIPEDLSSSL 365
Query: 187 TVPEHVNAYNIEKLNMVCNLRLLA 258
V EHV++YN + N+ CNL LLA
Sbjct: 366 VVSEHVSSYNFQSTNLKCNLHLLA 389
>ref|XP_006653694.1| PREDICTED: DNA-directed RNA polymerase IV subunit 1-like [Oryza
brachyantha]
Length = 1386
Score = 93.6 bits (231), Expect = 2e-17
Identities = 48/85 (56%), Positives = 57/85 (67%), Gaps = 2/85 (2%)
Frame = +1
Query: 7 SKFRAPNPSNEDSKSTS--GLRWMKDVVLSKRSDNAFRLTMVGDPKISTNEIGIPHCMSR 180
SK A E S ST G +W+KD++LSKRSDNAFR MVGDPKIS NEIGIP ++
Sbjct: 229 SKLYAKKSDGESSTSTDTYGTKWLKDIILSKRSDNAFRSIMVGDPKISLNEIGIPMDLAL 288
Query: 181 KLTVPEHVNAYNIEKLNMVCNLRLL 255
L V E V+ YN E +N+ CNL LL
Sbjct: 289 NLVVSEQVSYYNFETINLKCNLHLL 313
>gb|EEC77828.1| hypothetical protein OsI_17044 [Oryza sativa Indica Group]
Length = 1598
Score = 92.0 bits (227), Expect = 7e-17
Identities = 42/71 (59%), Positives = 54/71 (76%)
Frame = +1
Query: 43 SKSTSGLRWMKDVVLSKRSDNAFRLTMVGDPKISTNEIGIPHCMSRKLTVPEHVNAYNIE 222
S T G++W+KD++LSKRSDNAFR MVGDPKI+ NEIGIP ++ L V E V++YN E
Sbjct: 263 STDTYGIKWLKDIILSKRSDNAFRSIMVGDPKINLNEIGIPMGLALNLVVSEQVSSYNFE 322
Query: 223 KLNMVCNLRLL 255
+N+ CNL LL
Sbjct: 323 TINLKCNLHLL 333
>emb|CAH66955.1| OSIGBa0147H17.3 [Oryza sativa Indica Group]
Length = 1407
Score = 92.0 bits (227), Expect = 7e-17
Identities = 42/71 (59%), Positives = 54/71 (76%)
Frame = +1
Query: 43 SKSTSGLRWMKDVVLSKRSDNAFRLTMVGDPKISTNEIGIPHCMSRKLTVPEHVNAYNIE 222
S T G++W+KD++LSKRSDNAFR MVGDPKI+ NEIGIP ++ L V E V++YN E
Sbjct: 290 STDTYGIKWLKDIILSKRSDNAFRSIMVGDPKINLNEIGIPMGLALNLVVSEQVSSYNFE 349
Query: 223 KLNMVCNLRLL 255
+N+ CNL LL
Sbjct: 350 TINLKCNLHLL 360
>ref|XP_006661522.1| PREDICTED: DNA-directed RNA polymerase IV subunit 1-like [Oryza
brachyantha]
Length = 1492
Score = 91.3 bits (225), Expect = 1e-16
Identities = 45/85 (52%), Positives = 58/85 (68%), Gaps = 2/85 (2%)
Frame = +1
Query: 7 SKFRAPNPSNEDSKSTS--GLRWMKDVVLSKRSDNAFRLTMVGDPKISTNEIGIPHCMSR 180
SK + E S ST G +W+KD++LSKRSDNAFR MVGDPKI+ NEIG+P ++
Sbjct: 335 SKLYSRKSDGESSTSTDTYGTKWLKDIILSKRSDNAFRSVMVGDPKINLNEIGMPMDLAL 394
Query: 181 KLTVPEHVNAYNIEKLNMVCNLRLL 255
L V E V++YN E +N+ CNL LL
Sbjct: 395 NLVVSEQVSSYNFETINLKCNLHLL 419
>emb|CAD41657.3| OSJNBa0019K04.4 [Oryza sativa Japonica Group]
Length = 1664
Score = 90.9 bits (224), Expect = 2e-16
Identities = 42/71 (59%), Positives = 53/71 (74%)
Frame = +1
Query: 43 SKSTSGLRWMKDVVLSKRSDNAFRLTMVGDPKISTNEIGIPHCMSRKLTVPEHVNAYNIE 222
S T G +W+KD++LSKRSDNAFR MVGDPKI+ NEIGIP ++ L V E V++YN E
Sbjct: 295 STDTYGTKWLKDIILSKRSDNAFRSIMVGDPKINLNEIGIPMGLALNLVVSEQVSSYNFE 354
Query: 223 KLNMVCNLRLL 255
+N+ CNL LL
Sbjct: 355 TINLKCNLHLL 365
>ref|XP_002509696.1| DNA-directed RNA polymerase, putative [Ricinus communis]
gi|223549595|gb|EEF51083.1| DNA-directed RNA polymerase,
putative [Ricinus communis]
Length = 1475
Score = 90.9 bits (224), Expect = 2e-16
Identities = 44/89 (49%), Positives = 62/89 (69%)
Frame = +1
Query: 34 NEDSKSTSGLRWMKDVVLSKRSDNAFRLTMVGDPKISTNEIGIPHCMSRKLTVPEHVNAY 213
N+ S S+SGLRW+KDVVL KR+DN+FR+ +VGDP I +EIGIP ++ +L + EH+ +
Sbjct: 304 NDSSSSSSGLRWIKDVVLGKRNDNSFRMVVVGDPNIKFSEIGIPCPIAERLQISEHLTTW 363
Query: 214 NIEKLNMVCNLRLLAYMCYTLPGEGFLVK 300
N +KLN C +RLL + EG LV+
Sbjct: 364 NWDKLNTCCEVRLLEKGDMHVRREGKLVR 392
>gb|EEE61535.1| hypothetical protein OsJ_15844 [Oryza sativa Japonica Group]
Length = 1623
Score = 90.9 bits (224), Expect = 2e-16
Identities = 42/71 (59%), Positives = 53/71 (74%)
Frame = +1
Query: 43 SKSTSGLRWMKDVVLSKRSDNAFRLTMVGDPKISTNEIGIPHCMSRKLTVPEHVNAYNIE 222
S T G +W+KD++LSKRSDNAFR MVGDPKI+ NEIGIP ++ L V E V++YN E
Sbjct: 284 STDTYGTKWLKDIILSKRSDNAFRSIMVGDPKINLNEIGIPMGLALNLVVSEQVSSYNFE 343
Query: 223 KLNMVCNLRLL 255
+N+ CNL LL
Sbjct: 344 TINLKCNLHLL 354
>gb|EEE70198.1| hypothetical protein OsJ_30285 [Oryza sativa Japonica Group]
Length = 1384
Score = 90.1 bits (222), Expect = 3e-16
Identities = 43/80 (53%), Positives = 55/80 (68%)
Frame = +1
Query: 16 RAPNPSNEDSKSTSGLRWMKDVVLSKRSDNAFRLTMVGDPKISTNEIGIPHCMSRKLTVP 195
R + + S T G +W+KD++LSKRSDNAFR MVGDPKI+ NEIGIP ++ L V
Sbjct: 258 RKSDGEDPTSPDTYGTKWLKDIILSKRSDNAFRSIMVGDPKINLNEIGIPTDLALNLVVS 317
Query: 196 EHVNAYNIEKLNMVCNLRLL 255
E V+ YN E +N+ CNL LL
Sbjct: 318 EQVSFYNFETINLKCNLHLL 337
>gb|EEC85033.1| hypothetical protein OsI_32338 [Oryza sativa Indica Group]
Length = 1384
Score = 90.1 bits (222), Expect = 3e-16
Identities = 43/80 (53%), Positives = 55/80 (68%)
Frame = +1
Query: 16 RAPNPSNEDSKSTSGLRWMKDVVLSKRSDNAFRLTMVGDPKISTNEIGIPHCMSRKLTVP 195
R + + S T G +W+KD++LSKRSDNAFR MVGDPKI+ NEIGIP ++ L V
Sbjct: 258 RKSDGEDPTSPDTYGTKWLKDIILSKRSDNAFRSIMVGDPKINLNEIGIPTDLALNLVVS 317
Query: 196 EHVNAYNIEKLNMVCNLRLL 255
E V+ YN E +N+ CNL LL
Sbjct: 318 EQVSFYNFETINLKCNLHLL 337
>gb|EMJ12114.1| hypothetical protein PRUPE_ppa000278mg [Prunus persica]
Length = 1356
Score = 89.0 bits (219), Expect = 6e-16
Identities = 41/74 (55%), Positives = 55/74 (74%)
Frame = +1
Query: 34 NEDSKSTSGLRWMKDVVLSKRSDNAFRLTMVGDPKISTNEIGIPHCMSRKLTVPEHVNAY 213
+ D TSGLRW+KDVVL KRSD+ FR +VGDP I +EIGIP ++ +L + E++N +
Sbjct: 272 SHDPSKTSGLRWIKDVVLGKRSDHCFRTVVVGDPNIKLSEIGIPCQIAERLQISENLNRW 331
Query: 214 NIEKLNMVCNLRLL 255
NIEKL+ CNLRL+
Sbjct: 332 NIEKLDASCNLRLM 345