BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Zingiber23_contig00053737
         (389 letters)

Database: ./nr 
           37,332,560 sequences; 13,225,080,153 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

ref|XP_004970758.1| PREDICTED: DNA-directed RNA polymerase D sub...    74   2e-11
ref|XP_004970756.1| PREDICTED: DNA-directed RNA polymerase D sub...    74   2e-11
ref|XP_004970755.1| PREDICTED: DNA-directed RNA polymerase D sub...    74   2e-11
ref|XP_004970754.1| PREDICTED: DNA-directed RNA polymerase D sub...    74   2e-11
gb|ACL30982.1| mutant DNA dependent RNA polymerase D largest sub...    69   5e-10
gb|ACL30980.1| mutant DNA dependent RNA polymerase D largest sub...    69   5e-10
ref|NP_001182824.1| DNA dependent RNA polymerase D largest subun...    69   5e-10
ref|XP_003566523.1| PREDICTED: DNA-directed RNA polymerase D sub...    65   9e-09
ref|XP_006661522.1| PREDICTED: DNA-directed RNA polymerase IV su...    64   2e-08
gb|EMS66983.1| DNA-directed RNA polymerase D subunit 1 [Triticum...    64   2e-08
gb|EMT22317.1| DNA-directed RNA polymerase III subunit RPC1 [Aeg...    64   2e-08
ref|XP_002446962.1| hypothetical protein SORBIDRAFT_06g025933 [S...    64   2e-08
ref|XP_006653694.1| PREDICTED: DNA-directed RNA polymerase IV su...    62   6e-08
gb|EEE61535.1| hypothetical protein OsJ_15844 [Oryza sativa Japo...    57   3e-06
gb|EEC77828.1| hypothetical protein OsI_17044 [Oryza sativa Indi...    57   3e-06
emb|CAH66955.1| OSIGBa0147H17.3 [Oryza sativa Indica Group]            57   3e-06
gb|EMT26977.1| hypothetical protein F775_03417 [Aegilops tauschii]     55   1e-05

>ref|XP_004970758.1| PREDICTED: DNA-directed RNA polymerase D subunit 1-like isoform X5
           [Setaria italica]
          Length = 1181

 Score = 74.3 bits (181), Expect = 2e-11
 Identities = 43/129 (33%), Positives = 66/129 (51%)
 Frame = -3

Query: 387 LITILFKLYGKKXXXXXXXXXXXLCEYLTRRGXXXXXXXXXXXXXXXSRRKMMDEVSFGL 208
           L +I+FK YG+K           LCE+LT RG               SRRK+   V   L
Sbjct: 336 LFSIMFKQYGRKALDFLSSAQEVLCEFLTMRGLSVSLSDLYMFSDHYSRRKLTQGVKLAL 395

Query: 207 EEAEDACWIKQLIMEPKMNEALRCHNNNEDSLGSMSQYKLASKRCARQTSVSAFKDVYQE 28
           +EAE+A  IKQ++++P     L+CH+  ED     S Y + S     ++S+ +FKDV+ +
Sbjct: 396 DEAEEAFRIKQILLDPINIPVLKCHDETEDVTYRQSDY-IQSNLSVVRSSIMSFKDVFND 454

Query: 27  LLSAIRQFI 1
           LL  ++  +
Sbjct: 455 LLKMVQHHV 463


>ref|XP_004970756.1| PREDICTED: DNA-directed RNA polymerase D subunit 1-like isoform X3
           [Setaria italica]
          Length = 1362

 Score = 74.3 bits (181), Expect = 2e-11
 Identities = 43/129 (33%), Positives = 66/129 (51%)
 Frame = -3

Query: 387 LITILFKLYGKKXXXXXXXXXXXLCEYLTRRGXXXXXXXXXXXXXXXSRRKMMDEVSFGL 208
           L +I+FK YG+K           LCE+LT RG               SRRK+   V   L
Sbjct: 517 LFSIMFKQYGRKALDFLSSAQEVLCEFLTMRGLSVSLSDLYMFSDHYSRRKLTQGVKLAL 576

Query: 207 EEAEDACWIKQLIMEPKMNEALRCHNNNEDSLGSMSQYKLASKRCARQTSVSAFKDVYQE 28
           +EAE+A  IKQ++++P     L+CH+  ED     S Y + S     ++S+ +FKDV+ +
Sbjct: 577 DEAEEAFRIKQILLDPINIPVLKCHDETEDVTYRQSDY-IQSNLSVVRSSIMSFKDVFND 635

Query: 27  LLSAIRQFI 1
           LL  ++  +
Sbjct: 636 LLKMVQHHV 644


>ref|XP_004970755.1| PREDICTED: DNA-directed RNA polymerase D subunit 1-like isoform X2
           [Setaria italica]
          Length = 1450

 Score = 74.3 bits (181), Expect = 2e-11
 Identities = 43/129 (33%), Positives = 66/129 (51%)
 Frame = -3

Query: 387 LITILFKLYGKKXXXXXXXXXXXLCEYLTRRGXXXXXXXXXXXXXXXSRRKMMDEVSFGL 208
           L +I+FK YG+K           LCE+LT RG               SRRK+   V   L
Sbjct: 605 LFSIMFKQYGRKALDFLSSAQEVLCEFLTMRGLSVSLSDLYMFSDHYSRRKLTQGVKLAL 664

Query: 207 EEAEDACWIKQLIMEPKMNEALRCHNNNEDSLGSMSQYKLASKRCARQTSVSAFKDVYQE 28
           +EAE+A  IKQ++++P     L+CH+  ED     S Y + S     ++S+ +FKDV+ +
Sbjct: 665 DEAEEAFRIKQILLDPINIPVLKCHDETEDVTYRQSDY-IQSNLSVVRSSIMSFKDVFND 723

Query: 27  LLSAIRQFI 1
           LL  ++  +
Sbjct: 724 LLKMVQHHV 732


>ref|XP_004970754.1| PREDICTED: DNA-directed RNA polymerase D subunit 1-like isoform X1
           [Setaria italica] gi|514785102|ref|XP_004970757.1|
           PREDICTED: DNA-directed RNA polymerase D subunit 1-like
           isoform X4 [Setaria italica]
          Length = 1451

 Score = 74.3 bits (181), Expect = 2e-11
 Identities = 43/129 (33%), Positives = 66/129 (51%)
 Frame = -3

Query: 387 LITILFKLYGKKXXXXXXXXXXXLCEYLTRRGXXXXXXXXXXXXXXXSRRKMMDEVSFGL 208
           L +I+FK YG+K           LCE+LT RG               SRRK+   V   L
Sbjct: 606 LFSIMFKQYGRKALDFLSSAQEVLCEFLTMRGLSVSLSDLYMFSDHYSRRKLTQGVKLAL 665

Query: 207 EEAEDACWIKQLIMEPKMNEALRCHNNNEDSLGSMSQYKLASKRCARQTSVSAFKDVYQE 28
           +EAE+A  IKQ++++P     L+CH+  ED     S Y + S     ++S+ +FKDV+ +
Sbjct: 666 DEAEEAFRIKQILLDPINIPVLKCHDETEDVTYRQSDY-IQSNLSVVRSSIMSFKDVFND 724

Query: 27  LLSAIRQFI 1
           LL  ++  +
Sbjct: 725 LLKMVQHHV 733


>gb|ACL30982.1| mutant DNA dependent RNA polymerase D largest subunit rpd1-8 [Zea
           mays]
          Length = 1444

 Score = 69.3 bits (168), Expect = 5e-10
 Identities = 41/129 (31%), Positives = 66/129 (51%)
 Frame = -3

Query: 387 LITILFKLYGKKXXXXXXXXXXXLCEYLTRRGXXXXXXXXXXXXXXXSRRKMMDEVSFGL 208
           L +++FK YG K           LCE+LT RG               SRRK+ + V   L
Sbjct: 605 LFSVMFKQYGCKALDFLSSAQEVLCEFLTMRGLSVSLSDLYMFSDHYSRRKLAEGVKLAL 664

Query: 207 EEAEDACWIKQLIMEPKMNEALRCHNNNEDSLGSMSQYKLASKRCARQTSVSAFKDVYQE 28
            EAE+A  +K+++++P     L+CH+  ED     S   + S     ++S+ AFKDV+++
Sbjct: 665 YEAEEAFRVKKILLDPINIPVLKCHDETEDVTYRQSDC-IQSNPSVIRSSIMAFKDVFRD 723

Query: 27  LLSAIRQFI 1
           LL  ++Q +
Sbjct: 724 LLKMVQQHV 732


>gb|ACL30980.1| mutant DNA dependent RNA polymerase D largest subunit rpd1-1 [Zea
           mays]
          Length = 871

 Score = 69.3 bits (168), Expect = 5e-10
 Identities = 41/129 (31%), Positives = 66/129 (51%)
 Frame = -3

Query: 387 LITILFKLYGKKXXXXXXXXXXXLCEYLTRRGXXXXXXXXXXXXXXXSRRKMMDEVSFGL 208
           L +++FK YG K           LCE+LT RG               SRRK+ + V   L
Sbjct: 605 LFSVMFKQYGCKALDFLSSAQEVLCEFLTMRGLSVSLSDLYMFSDHYSRRKLAEGVKLAL 664

Query: 207 EEAEDACWIKQLIMEPKMNEALRCHNNNEDSLGSMSQYKLASKRCARQTSVSAFKDVYQE 28
            EAE+A  +K+++++P     L+CH+  ED     S   + S     ++S+ AFKDV+++
Sbjct: 665 YEAEEAFRVKKILLDPINIPVLKCHDETEDVTYRQSDC-IQSNPSVIRSSIMAFKDVFRD 723

Query: 27  LLSAIRQFI 1
           LL  ++Q +
Sbjct: 724 LLKMVQQHV 732


>ref|NP_001182824.1| DNA dependent RNA polymerase D largest subunit [Zea mays]
           gi|219662980|gb|ACL30979.1| DNA dependent RNA polymerase
           D largest subunit [Zea mays]
           gi|414869425|tpg|DAA47982.1| TPA: putative DNA dependent
           RNA polymerase D largest subunit family protein [Zea
           mays] gi|414869426|tpg|DAA47983.1| TPA: putative DNA
           dependent RNA polymerase D largest subunit family
           protein [Zea mays]
          Length = 1444

 Score = 69.3 bits (168), Expect = 5e-10
 Identities = 41/129 (31%), Positives = 66/129 (51%)
 Frame = -3

Query: 387 LITILFKLYGKKXXXXXXXXXXXLCEYLTRRGXXXXXXXXXXXXXXXSRRKMMDEVSFGL 208
           L +++FK YG K           LCE+LT RG               SRRK+ + V   L
Sbjct: 605 LFSVMFKQYGCKALDFLSSAQEVLCEFLTMRGLSVSLSDLYMFSDHYSRRKLAEGVKLAL 664

Query: 207 EEAEDACWIKQLIMEPKMNEALRCHNNNEDSLGSMSQYKLASKRCARQTSVSAFKDVYQE 28
            EAE+A  +K+++++P     L+CH+  ED     S   + S     ++S+ AFKDV+++
Sbjct: 665 YEAEEAFRVKKILLDPINIPVLKCHDETEDVTYRQSDC-IQSNPSVIRSSIMAFKDVFRD 723

Query: 27  LLSAIRQFI 1
           LL  ++Q +
Sbjct: 724 LLKMVQQHV 732


>ref|XP_003566523.1| PREDICTED: DNA-directed RNA polymerase D subunit 1-like
           [Brachypodium distachyon]
          Length = 1470

 Score = 65.1 bits (157), Expect = 9e-09
 Identities = 40/128 (31%), Positives = 65/128 (50%), Gaps = 1/128 (0%)
 Frame = -3

Query: 387 LITILFKLYGKKXXXXXXXXXXXLCEYLTRRGXXXXXXXXXXXXXXXSRRKMMDEVSFGL 208
           L ++LFK YG +           LCE+LT RG               SRRK  +EV+  L
Sbjct: 616 LFSVLFKQYGGEALEFLSSAQDMLCEFLTMRGLSVSLSDIYLFSDHYSRRKFAEEVNLAL 675

Query: 207 EEAEDACWIKQLIMEPKMNEALRCHNNNEDSLGSMSQYK-LASKRCARQTSVSAFKDVYQ 31
           +EAE+A  + Q+++ P     L+C+++ +D   S  Q   + S     ++S+ AFK V+ 
Sbjct: 676 DEAEEAFRVTQILLSPNFIPHLKCYDDCDDLSDSYEQSDFVQSNLPIIKSSIMAFKSVFS 735

Query: 30  ELLSAIRQ 7
           +LL  ++Q
Sbjct: 736 DLLKMVQQ 743


>ref|XP_006661522.1| PREDICTED: DNA-directed RNA polymerase IV subunit 1-like [Oryza
            brachyantha]
          Length = 1492

 Score = 64.3 bits (155), Expect = 2e-08
 Identities = 42/129 (32%), Positives = 66/129 (51%), Gaps = 2/129 (1%)
 Frame = -3

Query: 387  LITILFKLYGKKXXXXXXXXXXXLCEYLTRRGXXXXXXXXXXXXXXXSRRKMMDEVSFGL 208
            L +++F+ YG K           LCE+LT RG               SRRK+++EV   L
Sbjct: 637  LFSVMFEEYGCKALEFLSSSQDVLCEFLTMRGLSVSLSDFYLLSDHYSRRKLIEEVHLAL 696

Query: 207  EEAEDACWIKQLIMEPKMNEALRCHNNNEDSLGS--MSQYKLASKRCARQTSVSAFKDVY 34
            +EAE+A  IKQ+++ P     L+ ++  +D L S   S Y   S     Q+S+++FK V+
Sbjct: 697  DEAEEAFQIKQILLNPVSIPYLKYYDGADDLLNSYEQSDYTQVSLPII-QSSITSFKSVF 755

Query: 33   QELLSAIRQ 7
             +LL  + Q
Sbjct: 756  NDLLKMVHQ 764


>gb|EMS66983.1| DNA-directed RNA polymerase D subunit 1 [Triticum urartu]
          Length = 1402

 Score = 64.3 bits (155), Expect = 2e-08
 Identities = 40/128 (31%), Positives = 64/128 (50%), Gaps = 1/128 (0%)
 Frame = -3

Query: 387 LITILFKLYGKKXXXXXXXXXXXLCEYLTRRGXXXXXXXXXXXXXXXSRRKMMDEVSFGL 208
           L +++FK YG K           LCE+LT RG               SRRK+ D V+  L
Sbjct: 581 LFSVMFKQYGDKALELLSSAQDVLCEFLTMRGLSVSLSDIYLFPDHDSRRKLADGVNLAL 640

Query: 207 EEAEDACWIKQLIMEPKMNEALRCHNNNEDSLGSMSQYK-LASKRCARQTSVSAFKDVYQ 31
           ++AE+A  IKQ+++ P     L+C+++  D   S  Q   + S     ++S+ AFK V+ 
Sbjct: 641 DDAEEAFRIKQILLSPDSISILKCYDDCADLSQSYEQSNFIQSNLPIIKSSIMAFKSVFS 700

Query: 30  ELLSAIRQ 7
           +L   ++Q
Sbjct: 701 DLQKMVQQ 708


>gb|EMT22317.1| DNA-directed RNA polymerase III subunit RPC1 [Aegilops tauschii]
          Length = 1334

 Score = 63.9 bits (154), Expect = 2e-08
 Identities = 40/128 (31%), Positives = 64/128 (50%), Gaps = 1/128 (0%)
 Frame = -3

Query: 387 LITILFKLYGKKXXXXXXXXXXXLCEYLTRRGXXXXXXXXXXXXXXXSRRKMMDEVSFGL 208
           L +++FK YG K           LCE+LT RG               SRRK+ D V+  L
Sbjct: 545 LFSVMFKQYGDKALELLSSAQDVLCEFLTMRGLSVSLSDIYLFPDHDSRRKLADGVNLAL 604

Query: 207 EEAEDACWIKQLIMEPKMNEALRCHNNNEDSLGSMSQYK-LASKRCARQTSVSAFKDVYQ 31
           ++AE+A  IKQ+++ P     L+C+++  D   S  Q   + S     ++S+ AFK V+ 
Sbjct: 605 DDAEEAFRIKQILLSPDSIPILKCYDDCADLSQSYEQSNFIQSNLPIIKSSIMAFKSVFS 664

Query: 30  ELLSAIRQ 7
           +L   ++Q
Sbjct: 665 DLQKMVQQ 672


>ref|XP_002446962.1| hypothetical protein SORBIDRAFT_06g025933 [Sorghum bicolor]
           gi|241938145|gb|EES11290.1| hypothetical protein
           SORBIDRAFT_06g025933 [Sorghum bicolor]
          Length = 1203

 Score = 63.9 bits (154), Expect = 2e-08
 Identities = 40/129 (31%), Positives = 64/129 (49%)
 Frame = -3

Query: 387 LITILFKLYGKKXXXXXXXXXXXLCEYLTRRGXXXXXXXXXXXXXXXSRRKMMDEVSFGL 208
           L +++FK YG K           LCE+LT RG                RRK+ + V   L
Sbjct: 441 LFSVMFKQYGCKALDFLSSAQEVLCEFLTMRGLSVSLSDMFSDHYS--RRKLTEGVKLAL 498

Query: 207 EEAEDACWIKQLIMEPKMNEALRCHNNNEDSLGSMSQYKLASKRCARQTSVSAFKDVYQE 28
           +EAE+A  IKQ++++P     L+C +  ED     S   + +     ++S+ AFKDV+ +
Sbjct: 499 DEAEEAFRIKQILLDPINIPVLKCQDETEDVTYRQSDC-IQNNPSVIRSSIMAFKDVFSD 557

Query: 27  LLSAIRQFI 1
           LL  ++Q +
Sbjct: 558 LLKMVQQHV 566


>ref|XP_006653694.1| PREDICTED: DNA-directed RNA polymerase IV subunit 1-like [Oryza
           brachyantha]
          Length = 1386

 Score = 62.4 bits (150), Expect = 6e-08
 Identities = 39/131 (29%), Positives = 67/131 (51%), Gaps = 2/131 (1%)
 Frame = -3

Query: 387 LITILFKLYGKKXXXXXXXXXXXLCEYLTRRGXXXXXXXXXXXXXXXSRRKMMDEVSFGL 208
           L +++FK YG+K           LCE+LT RG               SRRK+ +EV   L
Sbjct: 531 LFSVMFKEYGRKALQFLSSTQDVLCEFLTIRGLSVSLSDLYLFSDHYSRRKLSEEVHLAL 590

Query: 207 EEAEDACWIKQLIMEPKMNEALRCHNNNEDSLGS--MSQYKLASKRCARQTSVSAFKDVY 34
           +EAE+A  IKQ+++ P     L+ ++  +D   S   S +  AS    + +S+++FK ++
Sbjct: 591 DEAEEAFQIKQILLNPVSIPNLKYYDGADDLSNSYGQSDFTQASPSIIK-SSITSFKSIF 649

Query: 33  QELLSAIRQFI 1
            +LL  ++  +
Sbjct: 650 NDLLKMVQHHV 660


>gb|EEE61535.1| hypothetical protein OsJ_15844 [Oryza sativa Japonica Group]
          Length = 1623

 Score = 56.6 bits (135), Expect = 3e-06
 Identities = 39/134 (29%), Positives = 65/134 (48%), Gaps = 5/134 (3%)
 Frame = -3

Query: 387 LITILFKLYGKKXXXXXXXXXXXLCEYLTRRGXXXXXXXXXXXXXXXSRRKMMDEVSFGL 208
           L +++FK YG K           LCE+LT  G               SRRK+ +EV   L
Sbjct: 572 LFSVMFKEYGCKALEFLSSTQDVLCEFLTMWGLSVSLSDLYLFSDHYSRRKLSEEVHLAL 631

Query: 207 EEAEDACWIKQLIMEPKMNEALRCHN-----NNEDSLGSMSQYKLASKRCARQTSVSAFK 43
           +EAE+A  IKQ+++       L+ ++     +N D     +Q  L   R    +S+++FK
Sbjct: 632 DEAEEAFQIKQILLNSVSIPNLKYYDGGDDRSNTDEQSGFTQVSLPIIR----SSMTSFK 687

Query: 42  DVYQELLSAIRQFI 1
            V+ +LL  ++Q++
Sbjct: 688 SVFNDLLKMVQQYV 701


>gb|EEC77828.1| hypothetical protein OsI_17044 [Oryza sativa Indica Group]
          Length = 1598

 Score = 56.6 bits (135), Expect = 3e-06
 Identities = 39/134 (29%), Positives = 65/134 (48%), Gaps = 5/134 (3%)
 Frame = -3

Query: 387 LITILFKLYGKKXXXXXXXXXXXLCEYLTRRGXXXXXXXXXXXXXXXSRRKMMDEVSFGL 208
           L +++FK YG K           LCE+LT  G               SRRK+ +EV   L
Sbjct: 551 LFSVMFKEYGCKALEFLSSTQDVLCEFLTMWGLSVSLSDLYLFSDHYSRRKLSEEVHLAL 610

Query: 207 EEAEDACWIKQLIMEPKMNEALRCHN-----NNEDSLGSMSQYKLASKRCARQTSVSAFK 43
           +EAE+A  IKQ+++       L+ ++     +N D     +Q  L   R    +S+++FK
Sbjct: 611 DEAEEAFQIKQILLNSVSIPNLKYYDGGDDRSNTDEQSGFTQVSLPIIR----SSMTSFK 666

Query: 42  DVYQELLSAIRQFI 1
            V+ +LL  ++Q++
Sbjct: 667 SVFNDLLKMVQQYV 680


>emb|CAH66955.1| OSIGBa0147H17.3 [Oryza sativa Indica Group]
          Length = 1407

 Score = 56.6 bits (135), Expect = 3e-06
 Identities = 39/134 (29%), Positives = 65/134 (48%), Gaps = 5/134 (3%)
 Frame = -3

Query: 387 LITILFKLYGKKXXXXXXXXXXXLCEYLTRRGXXXXXXXXXXXXXXXSRRKMMDEVSFGL 208
           L +++FK YG K           LCE+LT  G               SRRK+ +EV   L
Sbjct: 578 LFSVMFKEYGCKALEFLSSTQDVLCEFLTMWGLSVSLSDLYLFSDHYSRRKLSEEVHLAL 637

Query: 207 EEAEDACWIKQLIMEPKMNEALRCHN-----NNEDSLGSMSQYKLASKRCARQTSVSAFK 43
           +EAE+A  IKQ+++       L+ ++     +N D     +Q  L   R    +S+++FK
Sbjct: 638 DEAEEAFQIKQILLNSVSIPNLKYYDGGDDRSNTDEQSGFTQVSLPIIR----SSMTSFK 693

Query: 42  DVYQELLSAIRQFI 1
            V+ +LL  ++Q++
Sbjct: 694 SVFNDLLKMVQQYV 707


>gb|EMT26977.1| hypothetical protein F775_03417 [Aegilops tauschii]
          Length = 534

 Score = 55.1 bits (131), Expect = 1e-05
 Identities = 35/128 (27%), Positives = 62/128 (48%), Gaps = 1/128 (0%)
 Frame = -3

Query: 387 LITILFKLYGKKXXXXXXXXXXXLCEYLTRRGXXXXXXXXXXXXXXXSRRKMMDEVSFGL 208
           L +++FK YG             L E+ T RG               SR+K+ DEV+  L
Sbjct: 90  LSSVMFKEYGDAALKFLSSAQDVLSEFSTMRGFSVCLSDIYLFSDHNSRKKLADEVNLAL 149

Query: 207 EEAEDACWIKQLIMEPKMNEALRCHNNNEDSLGSMSQYKLASKRCA-RQTSVSAFKDVYQ 31
           ++A++A  I+QL++ P     L+C+++  D   +  Q +      +  ++S+ AFK V+ 
Sbjct: 150 DDAKEAFHIEQLLLSPNSILYLKCYDDCADLSNAYEQSEFMQNNLSIIKSSIMAFKSVFN 209

Query: 30  ELLSAIRQ 7
           +LL  + Q
Sbjct: 210 DLLKMVHQ 217