BLASTX nr result
ID: Zingiber23_contig00052702
seq
BLASTX 2.2.25 [Feb-01-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= Zingiber23_contig00052702
(326 letters)
Database: ./nr
37,332,560 sequences; 13,225,080,153 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
ref|YP_008567619.1| ORF3 [Piper yellow mottle virus] gi|54035746... 146 3e-33
ref|YP_009002585.1| polyprotein [Hibiscus bacilliform virus GD1]... 135 4e-30
gb|AHG94942.1| ORF3, partial [Dioscorea bacilliform virus] 133 3e-29
emb|CAE81279.1| polyprotein [Cacao swollen shoot virus] 128 9e-28
ref|NP_041734.1| polyprotein [Cacao swollen shoot virus] gi|3478... 127 1e-27
emb|CAD59232.1| polyprotein [Cacao swollen shoot virus] 127 1e-27
emb|CAG70342.1| CP, RT, RNaseH and protease polyprotein [Cacao s... 127 2e-27
emb|CAE81285.1| polyprotein [Cacao swollen shoot virus] 127 2e-27
emb|CAE76628.1| polyprotein [Cacao swollen shoot virus] 124 1e-26
gb|AHG32725.1| ORF3, partial [Dioscorea rotundata] 124 1e-26
gb|AFM82591.1| polyprotein [Cacao swollen shoot virus] 122 5e-26
gb|ABI47986.1| ORF3 protein [Dioscorea bacilliform virus] 120 2e-25
ref|YP_001036293.1| ORF3 protein [Dioscorea bacilliform virus] g... 120 2e-25
ref|YP_006273075.1| polyprotein [Fig badnavirus 1] gi|333493962|... 115 8e-24
ref|NP_569153.1| poplyprotein [Citrus yellow mosaic virus] gi|16... 113 2e-23
gb|ACE76858.1| polyprotein [Citrus yellow mosaic virus] 112 4e-23
gb|ACE76864.1| polyprotein [Citrus yellow mosaic virus] 112 5e-23
gb|ACH86211.1| unknown [Citrus yellow mosaic virus] 112 5e-23
gb|ACB87156.1| polyprotein [Citrus yellow mosaic virus] 112 5e-23
gb|AER00544.1| ORF III [Citrus yellow mosaic virus] 111 1e-22
>ref|YP_008567619.1| ORF3 [Piper yellow mottle virus] gi|540357465|gb|AGV08293.1| ORF3
[Piper yellow mottle virus]
Length = 1925
Score = 146 bits (368), Expect = 3e-33
Identities = 70/108 (64%), Positives = 86/108 (79%), Gaps = 1/108 (0%)
Frame = +3
Query: 6 FEGY-RGNEKFKSKNYSEQ*SLPSAFHQTGAMFVIPTELGRFDEVFMRWESITKNLVSLQ 182
FEGY + +FK K+ ++ +LPSA Q GA+FVIPT+LG FD VF RWESITKNLV+ Q
Sbjct: 613 FEGYNKSGVRFKHKDLADNWTLPSAQQQQGAVFVIPTQLGLFDSVFARWESITKNLVAAQ 672
Query: 183 GFTDAASKAEFIENLLGEAEKLTWIQWRMSYPNEYQELLNNADGSSGT 326
GFTD A K +FIENLLGEAEKLTWIQWR +Y EYQ+++N+ADG +GT
Sbjct: 673 GFTDPADKVDFIENLLGEAEKLTWIQWRSTYQAEYQQMMNSADGRAGT 720
>ref|YP_009002585.1| polyprotein [Hibiscus bacilliform virus GD1]
gi|584388573|gb|AHI90954.1| polyprotein [Hibiscus
bacilliform virus GD1]
Length = 1892
Score = 135 bits (341), Expect = 4e-30
Identities = 65/108 (60%), Positives = 79/108 (73%), Gaps = 1/108 (0%)
Frame = +3
Query: 6 FEGYRGNE-KFKSKNYSEQ*SLPSAFHQTGAMFVIPTELGRFDEVFMRWESITKNLVSLQ 182
FEGY +FK +E P+A QTGAMFVIP ++G F + F RWESITKN V+ Q
Sbjct: 557 FEGYMPRRPQFKQDRSTEYWQFPTAQGQTGAMFVIPRQIGLFHDAFNRWESITKNYVASQ 616
Query: 183 GFTDAASKAEFIENLLGEAEKLTWIQWRMSYPNEYQELLNNADGSSGT 326
GFTD+ KAEF+ENLLGE EKLTW+QWRM++P EYQE++N ADG GT
Sbjct: 617 GFTDSKDKAEFMENLLGETEKLTWVQWRMNFPTEYQEMVNAADGREGT 664
>gb|AHG94942.1| ORF3, partial [Dioscorea bacilliform virus]
Length = 1395
Score = 133 bits (334), Expect = 3e-29
Identities = 64/98 (65%), Positives = 74/98 (75%)
Frame = +3
Query: 33 FKSKNYSEQ*SLPSAFHQTGAMFVIPTELGRFDEVFMRWESITKNLVSLQGFTDAASKAE 212
F++++YS SLPSA TGAMF +P EL +FDEVF RWESITKNLVS Q F KAE
Sbjct: 132 FRARDYSNNWSLPSAQQNTGAMFYLPLELVKFDEVFSRWESITKNLVSQQSFITGKEKAE 191
Query: 213 FIENLLGEAEKLTWIQWRMSYPNEYQELLNNADGSSGT 326
FIENLLGE EKLTWIQWR ++P EY+ LL +ADG GT
Sbjct: 192 FIENLLGETEKLTWIQWRTAFPTEYETLLASADGREGT 229
>emb|CAE81279.1| polyprotein [Cacao swollen shoot virus]
Length = 1816
Score = 128 bits (321), Expect = 9e-28
Identities = 61/97 (62%), Positives = 72/97 (74%)
Frame = +3
Query: 36 KSKNYSEQ*SLPSAFHQTGAMFVIPTELGRFDEVFMRWESITKNLVSLQGFTDAASKAEF 215
K +Y+E LPS+ TGA+FV+P ++G F EVF RWESITKN V+ QGFTD K EF
Sbjct: 522 KRDDYTEWWQLPSSQGTTGALFVMPKQMGLFHEVFSRWESITKNYVAAQGFTDPTEKMEF 581
Query: 216 IENLLGEAEKLTWIQWRMSYPNEYQELLNNADGSSGT 326
+ENLLGE EKLTWIQWRM+Y EYQ+LL ADG GT
Sbjct: 582 MENLLGETEKLTWIQWRMNYEAEYQQLLTQADGRQGT 618
>ref|NP_041734.1| polyprotein [Cacao swollen shoot virus] gi|347871|gb|AAA03171.1|
polyprotein [Cacao swollen shoot virus]
Length = 1834
Score = 127 bits (320), Expect = 1e-27
Identities = 61/97 (62%), Positives = 71/97 (73%)
Frame = +3
Query: 36 KSKNYSEQ*SLPSAFHQTGAMFVIPTELGRFDEVFMRWESITKNLVSLQGFTDAASKAEF 215
K Y+E LPS+ TGA+FV+P ++G F EVF RWESITKN V+ QGFTD K EF
Sbjct: 518 KRDEYTEWWQLPSSQGTTGALFVMPKQMGLFHEVFSRWESITKNYVAAQGFTDPTEKMEF 577
Query: 216 IENLLGEAEKLTWIQWRMSYPNEYQELLNNADGSSGT 326
+ENLLGE EKLTWIQWRM+Y EYQ+LL ADG GT
Sbjct: 578 MENLLGETEKLTWIQWRMNYEAEYQQLLTQADGRQGT 614
>emb|CAD59232.1| polyprotein [Cacao swollen shoot virus]
Length = 1839
Score = 127 bits (320), Expect = 1e-27
Identities = 61/97 (62%), Positives = 71/97 (73%)
Frame = +3
Query: 36 KSKNYSEQ*SLPSAFHQTGAMFVIPTELGRFDEVFMRWESITKNLVSLQGFTDAASKAEF 215
K Y+E LPS+ TGA+FV+P ++G F EVF RWESITKN V+ QGFTD K EF
Sbjct: 518 KRDEYTEWWQLPSSQGTTGALFVMPKQMGLFHEVFSRWESITKNYVAAQGFTDPTEKMEF 577
Query: 216 IENLLGEAEKLTWIQWRMSYPNEYQELLNNADGSSGT 326
+ENLLGE EKLTWIQWRM+Y EYQ+LL ADG GT
Sbjct: 578 MENLLGETEKLTWIQWRMNYEAEYQQLLTQADGRQGT 614
>emb|CAG70342.1| CP, RT, RNaseH and protease polyprotein [Cacao swollen shoot virus]
Length = 1868
Score = 127 bits (319), Expect = 2e-27
Identities = 62/97 (63%), Positives = 71/97 (73%)
Frame = +3
Query: 36 KSKNYSEQ*SLPSAFHQTGAMFVIPTELGRFDEVFMRWESITKNLVSLQGFTDAASKAEF 215
K +Y+E LPS+ TGA+FV+P ++G F EVF RWESITKN V+ QGFTD K EF
Sbjct: 549 KRDDYTEWWQLPSSQGTTGALFVMPRQVGLFHEVFSRWESITKNYVAAQGFTDPVEKMEF 608
Query: 216 IENLLGEAEKLTWIQWRMSYPNEYQELLNNADGSSGT 326
IENLLGE EKLTWIQWRM+Y EYQ LL ADG GT
Sbjct: 609 IENLLGETEKLTWIQWRMNYETEYQTLLTLADGRQGT 645
>emb|CAE81285.1| polyprotein [Cacao swollen shoot virus]
Length = 1770
Score = 127 bits (318), Expect = 2e-27
Identities = 60/97 (61%), Positives = 72/97 (74%)
Frame = +3
Query: 36 KSKNYSEQ*SLPSAFHQTGAMFVIPTELGRFDEVFMRWESITKNLVSLQGFTDAASKAEF 215
K +Y+E LPS+ TGA+FV+P ++G F +VF RWESITKN V+ QGFTD K EF
Sbjct: 446 KRDDYTEWWQLPSSQGTTGALFVMPKQMGLFHDVFSRWESITKNYVAAQGFTDPTEKMEF 505
Query: 216 IENLLGEAEKLTWIQWRMSYPNEYQELLNNADGSSGT 326
+ENLLGE EKLTWIQWRM+Y EYQ+LL ADG GT
Sbjct: 506 MENLLGETEKLTWIQWRMNYEAEYQQLLTQADGRQGT 542
>emb|CAE76628.1| polyprotein [Cacao swollen shoot virus]
Length = 1847
Score = 124 bits (312), Expect = 1e-26
Identities = 59/97 (60%), Positives = 71/97 (73%)
Frame = +3
Query: 36 KSKNYSEQ*SLPSAFHQTGAMFVIPTELGRFDEVFMRWESITKNLVSLQGFTDAASKAEF 215
K +Y+E LPS+ TGA+FV+P ++G F +VF RWESITKN V+ Q FTD K EF
Sbjct: 523 KRDDYTEWWQLPSSQGTTGALFVMPKQIGLFHDVFSRWESITKNYVAAQSFTDPTEKMEF 582
Query: 216 IENLLGEAEKLTWIQWRMSYPNEYQELLNNADGSSGT 326
+ENLLGE EKLTWIQWRM+Y EYQ+LL ADG GT
Sbjct: 583 MENLLGETEKLTWIQWRMNYEAEYQQLLTQADGRQGT 619
>gb|AHG32725.1| ORF3, partial [Dioscorea rotundata]
Length = 1257
Score = 124 bits (311), Expect = 1e-26
Identities = 60/102 (58%), Positives = 71/102 (69%)
Frame = +3
Query: 21 GNEKFKSKNYSEQ*SLPSAFHQTGAMFVIPTELGRFDEVFMRWESITKNLVSLQGFTDAA 200
G +F+S +YS LPSA TGAMF +P EL +FD+VF WESITKN+VS F
Sbjct: 15 GRTRFRSMDYSPNWQLPSAQQTTGAMFYMPLELEKFDDVFSGWESITKNVVSQHSFISGR 74
Query: 201 SKAEFIENLLGEAEKLTWIQWRMSYPNEYQELLNNADGSSGT 326
KAEFIENLLGE EKLTWIQWR +Y EY+ L+ +ADG GT
Sbjct: 75 EKAEFIENLLGETEKLTWIQWRTAYNEEYETLIASADGREGT 116
>gb|AFM82591.1| polyprotein [Cacao swollen shoot virus]
Length = 1872
Score = 122 bits (306), Expect = 5e-26
Identities = 59/94 (62%), Positives = 69/94 (73%)
Frame = +3
Query: 45 NYSEQ*SLPSAFHQTGAMFVIPTELGRFDEVFMRWESITKNLVSLQGFTDAASKAEFIEN 224
+Y+E LPS+ TGA+FV+P ++G F +VF RWESITKN VS QG TD K EFIEN
Sbjct: 554 DYTEWWQLPSSQGTTGALFVMPKQIGLFHDVFSRWESITKNYVSAQGITDPTEKMEFIEN 613
Query: 225 LLGEAEKLTWIQWRMSYPNEYQELLNNADGSSGT 326
LLGE EKLTWIQWRM Y EYQ+LL A+G GT
Sbjct: 614 LLGETEKLTWIQWRMRYEAEYQQLLTLAEGRQGT 647
>gb|ABI47986.1| ORF3 protein [Dioscorea bacilliform virus]
Length = 1295
Score = 120 bits (300), Expect = 2e-25
Identities = 58/99 (58%), Positives = 67/99 (67%)
Frame = +3
Query: 30 KFKSKNYSEQ*SLPSAFHQTGAMFVIPTELGRFDEVFMRWESITKNLVSLQGFTDAASKA 209
+FK NYS LPSA TGAMF +P EL +FDEVF RWESITKN+ S F KA
Sbjct: 654 RFKPMNYSANLQLPSAQQTTGAMFYMPLELDKFDEVFSRWESITKNITSQHSFISGREKA 713
Query: 210 EFIENLLGEAEKLTWIQWRMSYPNEYQELLNNADGSSGT 326
+FIENLLGE EKLTWIQWR ++ E+ L+ ADG GT
Sbjct: 714 DFIENLLGETEKLTWIQWRTTFNAEFDSLIAAADGREGT 752
>ref|YP_001036293.1| ORF3 protein [Dioscorea bacilliform virus]
gi|113901272|gb|ABI47983.1| ORF3 protein [Dioscorea
bacilliform virus]
Length = 1887
Score = 120 bits (300), Expect = 2e-25
Identities = 58/99 (58%), Positives = 67/99 (67%)
Frame = +3
Query: 30 KFKSKNYSEQ*SLPSAFHQTGAMFVIPTELGRFDEVFMRWESITKNLVSLQGFTDAASKA 209
+FK NYS LPSA TGAMF +P EL +FDEVF RWESITKN+ S F KA
Sbjct: 654 RFKPMNYSANLQLPSAQQTTGAMFYMPLELDKFDEVFSRWESITKNITSQHSFISGREKA 713
Query: 210 EFIENLLGEAEKLTWIQWRMSYPNEYQELLNNADGSSGT 326
+FIENLLGE EKLTWIQWR ++ E+ L+ ADG GT
Sbjct: 714 DFIENLLGETEKLTWIQWRTTFNAEFDSLIAAADGREGT 752
>ref|YP_006273075.1| polyprotein [Fig badnavirus 1] gi|333493962|gb|AEF56561.1|
polyprotein [Fig badnavirus 1]
Length = 1837
Score = 115 bits (287), Expect = 8e-24
Identities = 54/99 (54%), Positives = 69/99 (69%)
Frame = +3
Query: 30 KFKSKNYSEQ*SLPSAFHQTGAMFVIPTELGRFDEVFMRWESITKNLVSLQGFTDAASKA 209
+FK E +LPSA + GAMFVIP +LG F++ F RWES+TKN V+ QGFTD K
Sbjct: 542 RFKGGYNDEMWTLPSAQQKNGAMFVIPEQLGLFNDAFSRWESVTKNHVATQGFTDTRDKI 601
Query: 210 EFIENLLGEAEKLTWIQWRMSYPNEYQELLNNADGSSGT 326
+++ENLLGE EKL WIQWRM+Y EY+ L+ +G GT
Sbjct: 602 KYMENLLGEIEKLIWIQWRMTYATEYEALVAIGEGRDGT 640
>ref|NP_569153.1| poplyprotein [Citrus yellow mosaic virus]
gi|16416939|gb|AAL18495.1|AF347695_3 unknown [citrus
yellow mosaic virus]
Length = 1983
Score = 113 bits (283), Expect = 2e-23
Identities = 57/108 (52%), Positives = 71/108 (65%), Gaps = 1/108 (0%)
Frame = +3
Query: 6 FEGYRGNE-KFKSKNYSEQ*SLPSAFHQTGAMFVIPTELGRFDEVFMRWESITKNLVSLQ 182
FEGY FK N++ SLPSA TGA+F++P ++G F EVF WE+ITK V+ Q
Sbjct: 647 FEGYYPKRPNFKRDNHAFI-SLPSAQQNTGALFIMPQQIGLFHEVFTSWEAITKAYVAQQ 705
Query: 183 GFTDAASKAEFIENLLGEAEKLTWIQWRMSYPNEYQELLNNADGSSGT 326
G TD KAEFIEN+LG EK+ W QWRM Y +EY+ L+ ADG GT
Sbjct: 706 GITDPRDKAEFIENMLGPTEKIIWTQWRMGYADEYENLVTTADGREGT 753
>gb|ACE76858.1| polyprotein [Citrus yellow mosaic virus]
Length = 1967
Score = 112 bits (281), Expect = 4e-23
Identities = 56/108 (51%), Positives = 71/108 (65%), Gaps = 1/108 (0%)
Frame = +3
Query: 6 FEGYRGNE-KFKSKNYSEQ*SLPSAFHQTGAMFVIPTELGRFDEVFMRWESITKNLVSLQ 182
FEGY FK N++ SLPSA TGA+F++P ++G F EVF WE+ITK V+ Q
Sbjct: 631 FEGYSPKRPNFKRDNHTFI-SLPSAQQNTGALFIMPQQIGLFHEVFTSWEAITKAYVAQQ 689
Query: 183 GFTDAASKAEFIENLLGEAEKLTWIQWRMSYPNEYQELLNNADGSSGT 326
G TD KA+FIEN+LG EK+ W QWRM Y +EY+ L+ ADG GT
Sbjct: 690 GITDPKDKADFIENMLGPTEKIIWTQWRMGYADEYENLVTTADGREGT 737
>gb|ACE76864.1| polyprotein [Citrus yellow mosaic virus]
Length = 1968
Score = 112 bits (280), Expect = 5e-23
Identities = 56/108 (51%), Positives = 71/108 (65%), Gaps = 1/108 (0%)
Frame = +3
Query: 6 FEGYRGNE-KFKSKNYSEQ*SLPSAFHQTGAMFVIPTELGRFDEVFMRWESITKNLVSLQ 182
FEGY FK N++ SLPSA TGA+F++P ++G F EVF WE+ITK V+ Q
Sbjct: 632 FEGYYPKRPNFKRDNHAFI-SLPSAHQSTGALFLMPQQIGLFHEVFTSWEAITKAYVAQQ 690
Query: 183 GFTDAASKAEFIENLLGEAEKLTWIQWRMSYPNEYQELLNNADGSSGT 326
G TD KA+FIEN+LG EK+ W QWRM Y +EY+ L+ ADG GT
Sbjct: 691 GITDPKDKADFIENMLGPTEKIIWTQWRMGYADEYENLVTTADGREGT 738
>gb|ACH86211.1| unknown [Citrus yellow mosaic virus]
Length = 1490
Score = 112 bits (280), Expect = 5e-23
Identities = 56/108 (51%), Positives = 71/108 (65%), Gaps = 1/108 (0%)
Frame = +3
Query: 6 FEGYRGNE-KFKSKNYSEQ*SLPSAFHQTGAMFVIPTELGRFDEVFMRWESITKNLVSLQ 182
FEGY FK N++ SLPSA TGA+F++P ++G F EVF WE+ITK V+ Q
Sbjct: 155 FEGYYPKRPNFKRDNHAFI-SLPSAQQNTGALFIMPQQIGLFHEVFTSWEAITKAYVAQQ 213
Query: 183 GFTDAASKAEFIENLLGEAEKLTWIQWRMSYPNEYQELLNNADGSSGT 326
G TD KA+FIEN+LG EK+ W QWRM Y +EY+ L+ ADG GT
Sbjct: 214 GITDPKDKADFIENMLGPTEKIIWTQWRMGYADEYENLVTTADGREGT 261
>gb|ACB87156.1| polyprotein [Citrus yellow mosaic virus]
Length = 1979
Score = 112 bits (280), Expect = 5e-23
Identities = 53/107 (49%), Positives = 68/107 (63%)
Frame = +3
Query: 6 FEGYRGNEKFKSKNYSEQ*SLPSAFHQTGAMFVIPTELGRFDEVFMRWESITKNLVSLQG 185
FEGY ++ SLPSA TGA+F++P ++G F EVF WE+ITK V+ QG
Sbjct: 639 FEGYSPKRPHFKRDNHTFISLPSAQQNTGALFIMPQQIGLFHEVFTSWEAITKAYVAQQG 698
Query: 186 FTDAASKAEFIENLLGEAEKLTWIQWRMSYPNEYQELLNNADGSSGT 326
TD KA+FIEN+LG EK+ W QWRM Y +EY+ L+ ADG GT
Sbjct: 699 ITDPRDKADFIENMLGPTEKIIWTQWRMGYADEYENLVTTADGREGT 745
>gb|AER00544.1| ORF III [Citrus yellow mosaic virus]
Length = 1976
Score = 111 bits (277), Expect = 1e-22
Identities = 53/107 (49%), Positives = 67/107 (62%)
Frame = +3
Query: 6 FEGYRGNEKFKSKNYSEQ*SLPSAFHQTGAMFVIPTELGRFDEVFMRWESITKNLVSLQG 185
FEGY ++ SLPSA TGA+F++P ++G F EVF WE+ITK V+ QG
Sbjct: 639 FEGYSPKRPHFKRDNHTFISLPSAQQNTGALFIMPQQIGLFHEVFTSWEAITKAYVAQQG 698
Query: 186 FTDAASKAEFIENLLGEAEKLTWIQWRMSYPNEYQELLNNADGSSGT 326
TD KAEFIEN+ G EK+ W QWRM Y +EY+ L+ ADG GT
Sbjct: 699 ITDPRDKAEFIENMSGPTEKIIWTQWRMGYADEYENLVTTADGREGT 745