BLASTX nr result

ID: Zingiber23_contig00051652 seq

BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Zingiber23_contig00051652
         (345 letters)

Database: ./nr 
           37,332,560 sequences; 13,225,080,153 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gb|EXB54531.1| DEAD-box ATP-dependent RNA helicase 52B [Morus no...    58   1e-06
gb|EMJ05795.1| hypothetical protein PRUPE_ppa003020mg [Prunus pe...    56   4e-06
ref|XP_003560609.1| PREDICTED: putative cellulose synthase A cat...    55   1e-05

>gb|EXB54531.1| DEAD-box ATP-dependent RNA helicase 52B [Morus notabilis]
          Length = 634

 Score = 58.2 bits (139), Expect = 1e-06
 Identities = 33/75 (44%), Positives = 47/75 (62%), Gaps = 3/75 (4%)
 Frame = -1

Query: 342 PLSKALAECMDEAKQEVPDWLRNYANMASAYSDKGVLRTGVSRFGSIDYRTGSTSGSQ-- 169
           PL+K L E M+E+ QE+PDWL  YA   ++ S  G  R G S+F + DYR+ +TSG++  
Sbjct: 517 PLAKVLVELMNESNQEIPDWLHQYAE--TSISSSGGQRHGSSKFAAYDYRS-TTSGNENY 573

Query: 168 -YSAPYGVKNSCRDN 127
            YS+ YG  +S   N
Sbjct: 574 YYSSSYGGADSFDPN 588


>gb|EMJ05795.1| hypothetical protein PRUPE_ppa003020mg [Prunus persica]
          Length = 611

 Score = 56.2 bits (134), Expect = 4e-06
 Identities = 29/63 (46%), Positives = 36/63 (57%), Gaps = 4/63 (6%)
 Frame = -1

Query: 345 QPLSKALAECMDEAKQEVPDWLRNYANMASAYSDKG----VLRTGVSRFGSIDYRTGSTS 178
           QPL+K L E M E+ QEVP WL  YA  +  YS  G      R+G SRFG  D+R  + S
Sbjct: 506 QPLAKGLIELMQESNQEVPSWLNEYAEGSQTYSSGGGGGRSQRSGGSRFGGYDFRRSAQS 565

Query: 177 GSQ 169
           G +
Sbjct: 566 GRE 568


>ref|XP_003560609.1| PREDICTED: putative cellulose synthase A catalytic subunit 11
            [UDP-forming]-like [Brachypodium distachyon]
          Length = 1265

 Score = 55.1 bits (131), Expect = 1e-05
 Identities = 31/66 (46%), Positives = 38/66 (57%), Gaps = 5/66 (7%)
 Frame = -1

Query: 345  QPLSKALAECMDEAKQEVPDWLRNYANM----ASAYSDKGVLRTGVSRFGSIDYRT-GST 181
            QP++K L E M EAKQ VPDWL  YA       S+Y  +    +G S FG  DYR+ G  
Sbjct: 1131 QPIAKGLLELMTEAKQSVPDWLEEYAARPCYGGSSYGGRSRRSSGGSSFGGRDYRSAGDY 1190

Query: 180  SGSQYS 163
            SG+ YS
Sbjct: 1191 SGNSYS 1196


Top