BLASTX nr result
ID: Zingiber23_contig00050707
seq
BLASTX 2.2.25 [Feb-01-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= Zingiber23_contig00050707
(237 letters)
Database: ./nr
37,332,560 sequences; 13,225,080,153 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
ref|XP_003574945.1| PREDICTED: DNA-directed RNA polymerase III s... 109 4e-22
ref|XP_006653556.1| PREDICTED: DNA-directed RNA polymerase III s... 108 1e-21
gb|EEE61245.1| hypothetical protein OsJ_15297 [Oryza sativa Japo... 108 1e-21
ref|NP_001053175.1| Os04g0492300 [Oryza sativa Japonica Group] g... 108 1e-21
tpg|DAA37181.1| TPA: putative DNA-directed RNA polymerase family... 105 6e-21
ref|XP_002446717.1| hypothetical protein SORBIDRAFT_06g021120 [S... 105 8e-21
ref|XP_004976057.1| PREDICTED: DNA-directed RNA polymerase III s... 100 2e-19
ref|XP_003570766.1| PREDICTED: DNA-directed RNA polymerase III s... 89 5e-16
emb|CBI16226.3| unnamed protein product [Vitis vinifera] 87 2e-15
ref|XP_002284657.1| PREDICTED: DNA-directed RNA polymerase III s... 87 2e-15
gb|EMJ09344.1| hypothetical protein PRUPE_ppa024521mg, partial [... 82 7e-14
ref|XP_002974416.1| hypothetical protein SELMODRAFT_442419 [Sela... 80 2e-13
ref|XP_002985715.1| hypothetical protein SELMODRAFT_446351 [Sela... 80 2e-13
ref|XP_006365152.1| PREDICTED: DNA-directed RNA polymerase III s... 78 1e-12
ref|XP_006365151.1| PREDICTED: DNA-directed RNA polymerase III s... 78 1e-12
gb|EXB53229.1| DNA-directed RNA polymerase III subunit RPC1 [Mor... 77 2e-12
gb|ESW04135.1| hypothetical protein PHAVU_011G070100g [Phaseolus... 77 2e-12
gb|EOY20721.1| DNA-directed RNA polymerase [Theobroma cacao] 77 2e-12
ref|XP_004251448.1| PREDICTED: DNA-directed RNA polymerase III s... 77 2e-12
ref|XP_002531828.1| DNA-directed RNA polymerase III largest subu... 76 5e-12
>ref|XP_003574945.1| PREDICTED: DNA-directed RNA polymerase III subunit rpc1-like
[Brachypodium distachyon]
Length = 1392
Score = 109 bits (272), Expect = 4e-22
Identities = 51/78 (65%), Positives = 61/78 (78%)
Frame = -3
Query: 235 EKFIVTNIAIPPVSIRPSVFVNAGVSSNEDGITSILKNIINTNSILREDLEGGSPPPKCL 56
EK I+T IA+PPV IRPSVFV G SNEDGIT IL+NI+NTNSIL+ L+ G P KC
Sbjct: 242 EKLIITEIAVPPVPIRPSVFVGGGRMSNEDGITCILRNIVNTNSILKGILQNGDPLMKCF 301
Query: 55 ECWDHLQIQVVEYVNSEA 2
+CW LQ+QVVEY+NS+A
Sbjct: 302 DCWQLLQLQVVEYINSDA 319
>ref|XP_006653556.1| PREDICTED: DNA-directed RNA polymerase III subunit rpc1-like [Oryza
brachyantha]
Length = 1389
Score = 108 bits (269), Expect = 1e-21
Identities = 52/78 (66%), Positives = 61/78 (78%)
Frame = -3
Query: 235 EKFIVTNIAIPPVSIRPSVFVNAGVSSNEDGITSILKNIINTNSILREDLEGGSPPPKCL 56
EK IVT IA+PPV IRPSVFV G SNED IT ILK+I NTNSIL+E+L+ G KC
Sbjct: 242 EKLIVTEIAVPPVPIRPSVFVAGGRMSNEDSITVILKSIANTNSILKENLQTGGQFMKCF 301
Query: 55 ECWDHLQIQVVEYVNSEA 2
+CW HLQ+QVVEY+NS+A
Sbjct: 302 DCWQHLQLQVVEYINSDA 319
>gb|EEE61245.1| hypothetical protein OsJ_15297 [Oryza sativa Japonica Group]
Length = 1321
Score = 108 bits (269), Expect = 1e-21
Identities = 52/78 (66%), Positives = 61/78 (78%)
Frame = -3
Query: 235 EKFIVTNIAIPPVSIRPSVFVNAGVSSNEDGITSILKNIINTNSILREDLEGGSPPPKCL 56
EK IVT IA+PPV IRPSVFV G SNED IT ILK+I NTNSIL+E+L+ G KC
Sbjct: 243 EKLIVTEIAVPPVPIRPSVFVAGGRMSNEDSITVILKSIANTNSILKENLQTGGQFMKCF 302
Query: 55 ECWDHLQIQVVEYVNSEA 2
+CW HLQ+QVVEY+NS+A
Sbjct: 303 DCWQHLQLQVVEYINSDA 320
>ref|NP_001053175.1| Os04g0492300 [Oryza sativa Japonica Group]
gi|38346223|emb|CAE02045.2| OJ990528_30.3 [Oryza sativa
Japonica Group] gi|38347455|emb|CAD41360.2|
OSJNBa0076N16.24 [Oryza sativa Japonica Group]
gi|113564746|dbj|BAF15089.1| Os04g0492300 [Oryza sativa
Japonica Group] gi|116310339|emb|CAH67354.1|
OSIGBa0130B08.14 [Oryza sativa Indica Group]
gi|116310740|emb|CAH67535.1| H0425E08.3 [Oryza sativa
Indica Group] gi|215768005|dbj|BAH00234.1| unnamed
protein product [Oryza sativa Japonica Group]
gi|218195112|gb|EEC77539.1| hypothetical protein
OsI_16437 [Oryza sativa Indica Group]
Length = 1383
Score = 108 bits (269), Expect = 1e-21
Identities = 52/78 (66%), Positives = 61/78 (78%)
Frame = -3
Query: 235 EKFIVTNIAIPPVSIRPSVFVNAGVSSNEDGITSILKNIINTNSILREDLEGGSPPPKCL 56
EK IVT IA+PPV IRPSVFV G SNED IT ILK+I NTNSIL+E+L+ G KC
Sbjct: 242 EKLIVTEIAVPPVPIRPSVFVAGGRMSNEDSITVILKSIANTNSILKENLQTGGQFMKCF 301
Query: 55 ECWDHLQIQVVEYVNSEA 2
+CW HLQ+QVVEY+NS+A
Sbjct: 302 DCWQHLQLQVVEYINSDA 319
>tpg|DAA37181.1| TPA: putative DNA-directed RNA polymerase family protein [Zea mays]
Length = 1030
Score = 105 bits (262), Expect = 6e-21
Identities = 51/78 (65%), Positives = 60/78 (76%)
Frame = -3
Query: 235 EKFIVTNIAIPPVSIRPSVFVNAGVSSNEDGITSILKNIINTNSILREDLEGGSPPPKCL 56
EK IVT IA+PPV IRPSV V +SNED IT ILK+I+NTNSIL+E L G P KC
Sbjct: 242 EKLIVTEIAVPPVPIRPSVVVGNSRTSNEDSITVILKSIVNTNSILKETLHTGGPFTKCF 301
Query: 55 ECWDHLQIQVVEYVNSEA 2
+CW +LQ+QVVEYVNS+A
Sbjct: 302 DCWQYLQLQVVEYVNSDA 319
>ref|XP_002446717.1| hypothetical protein SORBIDRAFT_06g021120 [Sorghum bicolor]
gi|241937900|gb|EES11045.1| hypothetical protein
SORBIDRAFT_06g021120 [Sorghum bicolor]
Length = 1391
Score = 105 bits (261), Expect = 8e-21
Identities = 50/78 (64%), Positives = 61/78 (78%)
Frame = -3
Query: 235 EKFIVTNIAIPPVSIRPSVFVNAGVSSNEDGITSILKNIINTNSILREDLEGGSPPPKCL 56
EK IV+ IA+PPV IRPSV V + +SNED IT ILK+I+NTNSIL+E L G P KC
Sbjct: 242 EKLIVSEIAVPPVPIRPSVVVGSSRTSNEDSITVILKSIVNTNSILKETLHTGGPFTKCF 301
Query: 55 ECWDHLQIQVVEYVNSEA 2
+CW +LQ+QVVEYVNS+A
Sbjct: 302 DCWQYLQLQVVEYVNSDA 319
>ref|XP_004976057.1| PREDICTED: DNA-directed RNA polymerase III subunit rpc1-like
[Setaria italica]
Length = 1397
Score = 100 bits (249), Expect = 2e-19
Identities = 49/78 (62%), Positives = 60/78 (76%)
Frame = -3
Query: 235 EKFIVTNIAIPPVSIRPSVFVNAGVSSNEDGITSILKNIINTNSILREDLEGGSPPPKCL 56
EK IVT IA+PPV IRPSV V +SNED IT+ILK+I+NTNSIL+E L+ G KC
Sbjct: 245 EKLIVTEIAVPPVPIRPSVVVGNTRTSNEDSITAILKSIVNTNSILKETLQTGGLFSKCF 304
Query: 55 ECWDHLQIQVVEYVNSEA 2
+CW LQ+QVVE+VNS+A
Sbjct: 305 DCWQQLQLQVVEFVNSDA 322
>ref|XP_003570766.1| PREDICTED: DNA-directed RNA polymerase III subunit rpc1-like
[Brachypodium distachyon]
Length = 1400
Score = 89.4 bits (220), Expect = 5e-16
Identities = 42/78 (53%), Positives = 54/78 (69%)
Frame = -3
Query: 235 EKFIVTNIAIPPVSIRPSVFVNAGVSSNEDGITSILKNIINTNSILREDLEGGSPPPKCL 56
E I+T+IA+PPV IRPS FV SNED ITSIL+NI+N NS L+ ++ G P KC
Sbjct: 247 ENLIITDIAVPPVPIRPSRFVAGTTMSNEDSITSILRNIVNANSHLKLTIQDGQVPMKCF 306
Query: 55 ECWDHLQIQVVEYVNSEA 2
W+ LQ V+EY+NS+A
Sbjct: 307 TWWEQLQDNVIEYINSDA 324
>emb|CBI16226.3| unnamed protein product [Vitis vinifera]
Length = 1819
Score = 87.0 bits (214), Expect = 2e-15
Identities = 37/77 (48%), Positives = 55/77 (71%)
Frame = -3
Query: 235 EKFIVTNIAIPPVSIRPSVFVNAGVSSNEDGITSILKNIINTNSILREDLEGGSPPPKCL 56
EK ++TNI +PP++IRPSVF++ G SNE+ +T LK II N+ L ++L+ KCL
Sbjct: 247 EKLVLTNIGVPPIAIRPSVFMDGGTQSNENDVTERLKRIIQANASLHQELQDTGSTSKCL 306
Query: 55 ECWDHLQIQVVEYVNSE 5
WD+LQI+V +Y+NS+
Sbjct: 307 AGWDYLQIEVAQYINSD 323
>ref|XP_002284657.1| PREDICTED: DNA-directed RNA polymerase III subunit rpc1-like [Vitis
vinifera]
Length = 1383
Score = 87.0 bits (214), Expect = 2e-15
Identities = 37/77 (48%), Positives = 55/77 (71%)
Frame = -3
Query: 235 EKFIVTNIAIPPVSIRPSVFVNAGVSSNEDGITSILKNIINTNSILREDLEGGSPPPKCL 56
EK ++TNI +PP++IRPSVF++ G SNE+ +T LK II N+ L ++L+ KCL
Sbjct: 247 EKLVLTNIGVPPIAIRPSVFMDGGTQSNENDVTERLKRIIQANASLHQELQDTGSTSKCL 306
Query: 55 ECWDHLQIQVVEYVNSE 5
WD+LQI+V +Y+NS+
Sbjct: 307 AGWDYLQIEVAQYINSD 323
>gb|EMJ09344.1| hypothetical protein PRUPE_ppa024521mg, partial [Prunus persica]
Length = 867
Score = 82.0 bits (201), Expect = 7e-14
Identities = 39/77 (50%), Positives = 54/77 (70%)
Frame = -3
Query: 235 EKFIVTNIAIPPVSIRPSVFVNAGVSSNEDGITSILKNIINTNSILREDLEGGSPPPKCL 56
+ I+ NIA+PP++IRPSV V+ +S NE+ IT LK II +N+ILR DL PKCL
Sbjct: 255 QNLIIKNIAVPPIAIRPSVIVDRSLS-NENDITERLKRIIQSNAILRRDLLEAKSAPKCL 313
Query: 55 ECWDHLQIQVVEYVNSE 5
WD LQ++V +Y+NS+
Sbjct: 314 ASWDILQVEVAQYINSD 330
>ref|XP_002974416.1| hypothetical protein SELMODRAFT_442419 [Selaginella moellendorffii]
gi|300158014|gb|EFJ24638.1| hypothetical protein
SELMODRAFT_442419 [Selaginella moellendorffii]
Length = 1348
Score = 80.5 bits (197), Expect = 2e-13
Identities = 40/77 (51%), Positives = 53/77 (68%)
Frame = -3
Query: 235 EKFIVTNIAIPPVSIRPSVFVNAGVSSNEDGITSILKNIINTNSILREDLEGGSPPPKCL 56
E+ IV ++ +PPV+IRPSV ++A V SNED +T L +II N+ +R LE G KC+
Sbjct: 261 EQLIVQHMPVPPVAIRPSVEMDAAVGSNEDDVTIKLMHIIEQNNQIRACLESGLSIAKCM 320
Query: 55 ECWDHLQIQVVEYVNSE 5
E WD LQIQV Y+NSE
Sbjct: 321 EIWDFLQIQVAMYINSE 337
>ref|XP_002985715.1| hypothetical protein SELMODRAFT_446351 [Selaginella moellendorffii]
gi|300146624|gb|EFJ13293.1| hypothetical protein
SELMODRAFT_446351 [Selaginella moellendorffii]
Length = 1393
Score = 80.5 bits (197), Expect = 2e-13
Identities = 40/77 (51%), Positives = 53/77 (68%)
Frame = -3
Query: 235 EKFIVTNIAIPPVSIRPSVFVNAGVSSNEDGITSILKNIINTNSILREDLEGGSPPPKCL 56
E+ IV ++ +PPV+IRPSV ++A V SNED +T L +II N+ +R LE G KC+
Sbjct: 261 EQLIVQHMPVPPVAIRPSVEMDAAVGSNEDDVTIKLMHIIEQNNQIRACLESGLSIAKCM 320
Query: 55 ECWDHLQIQVVEYVNSE 5
E WD LQIQV Y+NSE
Sbjct: 321 EIWDFLQIQVAMYINSE 337
>ref|XP_006365152.1| PREDICTED: DNA-directed RNA polymerase III subunit rpc1-like
isoform X2 [Solanum tuberosum]
Length = 1243
Score = 77.8 bits (190), Expect = 1e-12
Identities = 37/77 (48%), Positives = 53/77 (68%)
Frame = -3
Query: 235 EKFIVTNIAIPPVSIRPSVFVNAGVSSNEDGITSILKNIINTNSILREDLEGGSPPPKCL 56
EK +VT+I +PP++IRPSVFV+ G SNE+ IT LK II N+ L +++ S P K L
Sbjct: 245 EKLLVTSIPVPPIAIRPSVFVDGGTQSNENDITERLKRIIQANASLHQEMSDSS-PVKSL 303
Query: 55 ECWDHLQIQVVEYVNSE 5
W LQ++V +Y+NS+
Sbjct: 304 NLWIDLQMEVAQYINSD 320
>ref|XP_006365151.1| PREDICTED: DNA-directed RNA polymerase III subunit rpc1-like
isoform X1 [Solanum tuberosum]
Length = 1394
Score = 77.8 bits (190), Expect = 1e-12
Identities = 37/77 (48%), Positives = 53/77 (68%)
Frame = -3
Query: 235 EKFIVTNIAIPPVSIRPSVFVNAGVSSNEDGITSILKNIINTNSILREDLEGGSPPPKCL 56
EK +VT+I +PP++IRPSVFV+ G SNE+ IT LK II N+ L +++ S P K L
Sbjct: 245 EKLLVTSIPVPPIAIRPSVFVDGGTQSNENDITERLKRIIQANASLHQEMSDSS-PVKSL 303
Query: 55 ECWDHLQIQVVEYVNSE 5
W LQ++V +Y+NS+
Sbjct: 304 NLWIDLQMEVAQYINSD 320
>gb|EXB53229.1| DNA-directed RNA polymerase III subunit RPC1 [Morus notabilis]
Length = 1179
Score = 77.0 bits (188), Expect = 2e-12
Identities = 39/77 (50%), Positives = 52/77 (67%)
Frame = -3
Query: 235 EKFIVTNIAIPPVSIRPSVFVNAGVSSNEDGITSILKNIINTNSILREDLEGGSPPPKCL 56
E I+TNI++PP++IRPSV ++ G SNE+ +T LK II N+ LR+DL GS K L
Sbjct: 17 ENLILTNISVPPIAIRPSVIMD-GSQSNENDLTERLKQIIQVNATLRQDLSEGSAAAKFL 75
Query: 55 ECWDHLQIQVVEYVNSE 5
E WD LQ V Y+NS+
Sbjct: 76 ENWDALQAHVALYINSD 92
>gb|ESW04135.1| hypothetical protein PHAVU_011G070100g [Phaseolus vulgaris]
Length = 1392
Score = 77.0 bits (188), Expect = 2e-12
Identities = 37/77 (48%), Positives = 56/77 (72%)
Frame = -3
Query: 235 EKFIVTNIAIPPVSIRPSVFVNAGVSSNEDGITSILKNIINTNSILREDLEGGSPPPKCL 56
EK I+TNI +PP++IRPSV ++ +S NE+ IT LKNII N++LR++L+ S K L
Sbjct: 247 EKLIITNIVVPPIAIRPSVVMDESLS-NENDITERLKNIIQANAVLRQELQESSVSSKFL 305
Query: 55 ECWDHLQIQVVEYVNSE 5
+ W+ LQ +V +++NSE
Sbjct: 306 DGWEILQNEVAQFINSE 322
>gb|EOY20721.1| DNA-directed RNA polymerase [Theobroma cacao]
Length = 1395
Score = 77.0 bits (188), Expect = 2e-12
Identities = 38/77 (49%), Positives = 54/77 (70%)
Frame = -3
Query: 235 EKFIVTNIAIPPVSIRPSVFVNAGVSSNEDGITSILKNIINTNSILREDLEGGSPPPKCL 56
EK I+TNIA+PP+ IRPSV ++ G SNE+ IT LK II N+ LR++L + KCL
Sbjct: 245 EKLIITNIAVPPIPIRPSVIMD-GSQSNENDITERLKRIIQANASLRQELVETNAAFKCL 303
Query: 55 ECWDHLQIQVVEYVNSE 5
W+ LQ++V +Y+NS+
Sbjct: 304 GGWEMLQVEVAQYINSD 320
>ref|XP_004251448.1| PREDICTED: DNA-directed RNA polymerase III subunit rpc1-like
[Solanum lycopersicum]
Length = 1390
Score = 77.0 bits (188), Expect = 2e-12
Identities = 37/77 (48%), Positives = 53/77 (68%)
Frame = -3
Query: 235 EKFIVTNIAIPPVSIRPSVFVNAGVSSNEDGITSILKNIINTNSILREDLEGGSPPPKCL 56
EK +VT+I +PP++IRPSVFV+ G SNE+ IT LK II N+ L +++ S P K L
Sbjct: 245 EKLLVTSIPVPPIAIRPSVFVDGGTQSNENDITERLKRIIQANASLHQEMSDSS-PVKSL 303
Query: 55 ECWDHLQIQVVEYVNSE 5
W LQ++V +Y+NS+
Sbjct: 304 NQWIDLQMEVAQYINSD 320
>ref|XP_002531828.1| DNA-directed RNA polymerase III largest subunit, putative [Ricinus
communis] gi|223528524|gb|EEF30548.1| DNA-directed RNA
polymerase III largest subunit, putative [Ricinus
communis]
Length = 1383
Score = 75.9 bits (185), Expect = 5e-12
Identities = 43/78 (55%), Positives = 53/78 (67%), Gaps = 1/78 (1%)
Frame = -3
Query: 235 EKFIVTNIAIPPVSIRPSVFVNAGVSSNEDGITSILKNIINTNSILR-EDLEGGSPPPKC 59
EK I+TNIA+PP+SIRPSVF + G+ SNE+ IT LK II N+ LR E LEG K
Sbjct: 221 EKLIITNIAVPPISIRPSVFTD-GLQSNENDITERLKQIIQANASLRMELLEGRMSVNKY 279
Query: 58 LECWDHLQIQVVEYVNSE 5
L+ WD LQ V Y+NS+
Sbjct: 280 LDSWDGLQAAVALYMNSD 297