BLASTX nr result
ID: Zingiber23_contig00050535
seq
BLASTX 2.2.25 [Feb-01-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= Zingiber23_contig00050535
(365 letters)
Database: ./nr
37,332,560 sequences; 13,225,080,153 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
ref|XP_004300462.1| PREDICTED: LOW QUALITY PROTEIN: DNA mismatch... 89 5e-16
gb|EMJ02419.1| hypothetical protein PRUPE_ppa000344mg [Prunus pe... 87 3e-15
emb|CBI36942.3| unnamed protein product [Vitis vinifera] 87 3e-15
ref|XP_002275930.1| PREDICTED: DNA mismatch repair protein Msh6-... 87 3e-15
emb|CAN78918.1| hypothetical protein VITISV_032225 [Vitis vinifera] 87 3e-15
gb|EMT09463.1| DNA mismatch repair protein Msh6-1 [Aegilops taus... 84 2e-14
ref|XP_003576514.1| PREDICTED: DNA mismatch repair protein Msh6-... 84 2e-14
gb|EMS59893.1| DNA mismatch repair protein Msh6-1 [Triticum urartu] 84 3e-14
dbj|BAK02401.1| predicted protein [Hordeum vulgare subsp. vulgare] 83 3e-14
ref|XP_004956779.1| PREDICTED: DNA mismatch repair protein MSH6-... 82 1e-13
ref|XP_006396405.1| hypothetical protein EUTSA_v10028364mg [Eutr... 81 1e-13
ref|XP_006286904.1| hypothetical protein CARUB_v10000048mg [Caps... 81 1e-13
ref|XP_006286903.1| hypothetical protein CARUB_v10000048mg [Caps... 81 1e-13
ref|XP_003625965.1| DNA mismatch repair protein Msh6-1 [Medicago... 81 2e-13
ref|NP_192116.1| DNA mismatch repair protein MSH6 [Arabidopsis t... 80 3e-13
ref|XP_002515294.1| ATP binding protein, putative [Ricinus commu... 79 6e-13
gb|ESW35166.1| hypothetical protein PHAVU_001G212500g [Phaseolus... 79 8e-13
ref|XP_002874942.1| hypothetical protein ARALYDRAFT_912022 [Arab... 78 1e-12
ref|NP_001190656.1| DNA mismatch repair protein MSH6 [Arabidopsi... 78 1e-12
ref|XP_006604739.1| PREDICTED: DNA mismatch repair protein MSH6-... 77 2e-12
>ref|XP_004300462.1| PREDICTED: LOW QUALITY PROTEIN: DNA mismatch repair protein
MSH6-like [Fragaria vesca subsp. vesca]
Length = 1291
Score = 89.4 bits (220), Expect = 5e-16
Identities = 49/111 (44%), Positives = 58/111 (52%), Gaps = 1/111 (0%)
Frame = -3
Query: 330 KKLNFGGNGGKIMNKSSPCAAEITSFCSPLTSDK-RAQIQTAINNILTSXXXXXXXXXXX 154
+KL+ GGN G S + LT A+ A+N I
Sbjct: 206 RKLSGGGNLGSAKKTKSGGDVVTNGLKANLTEPTTEAESTKAVNGIKIGDASERFSMREA 265
Query: 153 XXXXXXRVGRMDAKRRCPGDENYDPKTLYLPPEFLKTLSGGQRQWWEFKSK 1
R DAK+RCPGD NYDP+TLYLPP+FLK+LSGGQRQWWEFKSK
Sbjct: 266 EKFRFLGEKRRDAKKRCPGDPNYDPRTLYLPPDFLKSLSGGQRQWWEFKSK 316
>gb|EMJ02419.1| hypothetical protein PRUPE_ppa000344mg [Prunus persica]
Length = 1263
Score = 86.7 bits (213), Expect = 3e-15
Identities = 45/110 (40%), Positives = 61/110 (55%)
Frame = -3
Query: 330 KKLNFGGNGGKIMNKSSPCAAEITSFCSPLTSDKRAQIQTAINNILTSXXXXXXXXXXXX 151
+KL GGN G K + C ++ P + + ++ +N +++
Sbjct: 220 RKLKGGGNLGSA--KKTKCDKDVME---PTPNVESMKVANGMNTVVSGDASARFIVREAE 274
Query: 150 XXXXXRVGRMDAKRRCPGDENYDPKTLYLPPEFLKTLSGGQRQWWEFKSK 1
R DAK+R PGD NYDP+TLYLPP+FLK+LSGGQRQWWEFKSK
Sbjct: 275 KLHFLGEVRRDAKKRFPGDANYDPRTLYLPPDFLKSLSGGQRQWWEFKSK 324
>emb|CBI36942.3| unnamed protein product [Vitis vinifera]
Length = 1237
Score = 86.7 bits (213), Expect = 3e-15
Identities = 49/126 (38%), Positives = 64/126 (50%), Gaps = 5/126 (3%)
Frame = -3
Query: 363 KKMDVESLDCTKKLNFG-GNGGKIMNKSSPCAAEITSF----CSPLTSDKRAQIQTAINN 199
KK + +D K+ G G G + S AE +F P+ + + + ++N
Sbjct: 192 KKGQSKKVDPKKRKAVGEGTMGSGKRRKSSGGAEKNTFKVSSVEPMKNAESRKASDILDN 251
Query: 198 ILTSXXXXXXXXXXXXXXXXXRVGRMDAKRRCPGDENYDPKTLYLPPEFLKTLSGGQRQW 19
+L R DAKRRCPGD NYDP+TLYLPP FLK L+GGQRQW
Sbjct: 252 VLPGDALERFGAREAEKLPFLGGERKDAKRRCPGDANYDPRTLYLPPNFLKNLTGGQRQW 311
Query: 18 WEFKSK 1
WEFKS+
Sbjct: 312 WEFKSR 317
>ref|XP_002275930.1| PREDICTED: DNA mismatch repair protein Msh6-1-like [Vitis vinifera]
Length = 1297
Score = 86.7 bits (213), Expect = 3e-15
Identities = 49/126 (38%), Positives = 64/126 (50%), Gaps = 5/126 (3%)
Frame = -3
Query: 363 KKMDVESLDCTKKLNFG-GNGGKIMNKSSPCAAEITSF----CSPLTSDKRAQIQTAINN 199
KK + +D K+ G G G + S AE +F P+ + + + ++N
Sbjct: 222 KKGQSKKVDPKKRKAVGEGTMGSGKRRKSSGGAEKNTFKVSSVEPMKNAESRKASDILDN 281
Query: 198 ILTSXXXXXXXXXXXXXXXXXRVGRMDAKRRCPGDENYDPKTLYLPPEFLKTLSGGQRQW 19
+L R DAKRRCPGD NYDP+TLYLPP FLK L+GGQRQW
Sbjct: 282 VLPGDALERFGAREAEKLPFLGGERKDAKRRCPGDANYDPRTLYLPPNFLKNLTGGQRQW 341
Query: 18 WEFKSK 1
WEFKS+
Sbjct: 342 WEFKSR 347
>emb|CAN78918.1| hypothetical protein VITISV_032225 [Vitis vinifera]
Length = 1349
Score = 86.7 bits (213), Expect = 3e-15
Identities = 49/126 (38%), Positives = 64/126 (50%), Gaps = 5/126 (3%)
Frame = -3
Query: 363 KKMDVESLDCTKKLNFG-GNGGKIMNKSSPCAAEITSF----CSPLTSDKRAQIQTAINN 199
KK + +D K+ G G G + S AE +F P+ + + + ++N
Sbjct: 230 KKGQSKKVDPKKRKAVGEGTMGSGKRRKSSGGAEKNTFKVSSVEPMKNAESRKASDILDN 289
Query: 198 ILTSXXXXXXXXXXXXXXXXXRVGRMDAKRRCPGDENYDPKTLYLPPEFLKTLSGGQRQW 19
+L R DAKRRCPGD NYDP+TLYLPP FLK L+GGQRQW
Sbjct: 290 VLPGDALERFGAREAEKLPFLGGERKDAKRRCPGDANYDPRTLYLPPNFLKNLTGGQRQW 349
Query: 18 WEFKSK 1
WEFKS+
Sbjct: 350 WEFKSR 355
>gb|EMT09463.1| DNA mismatch repair protein Msh6-1 [Aegilops tauschii]
Length = 852
Score = 84.0 bits (206), Expect = 2e-14
Identities = 47/121 (38%), Positives = 63/121 (52%)
Frame = -3
Query: 363 KKMDVESLDCTKKLNFGGNGGKIMNKSSPCAAEITSFCSPLTSDKRAQIQTAINNILTSX 184
K++DV +LDC KK +F ++ N ++ C D+R +I + LT
Sbjct: 369 KQVDVGALDCAKKFSF-----QLANTPEKAEMKVPPSC-----DRRERILENAHLALTGD 418
Query: 183 XXXXXXXXXXXXXXXXRVGRMDAKRRCPGDENYDPKTLYLPPEFLKTLSGGQRQWWEFKS 4
GR DAK R PGD YDP+TL+LP +FLK L+GGQRQWWEFKS
Sbjct: 419 LSERFGSRQTEKFTFLGQGRKDAKGRRPGDPAYDPRTLFLPSQFLKNLTGGQRQWWEFKS 478
Query: 3 K 1
+
Sbjct: 479 Q 479
>ref|XP_003576514.1| PREDICTED: DNA mismatch repair protein Msh6-1-like [Brachypodium
distachyon]
Length = 1318
Score = 84.0 bits (206), Expect = 2e-14
Identities = 49/121 (40%), Positives = 63/121 (52%)
Frame = -3
Query: 363 KKMDVESLDCTKKLNFGGNGGKIMNKSSPCAAEITSFCSPLTSDKRAQIQTAINNILTSX 184
KK+DV +LDC KK +F S+P E+ P++ D R +I + +LT
Sbjct: 271 KKVDVGTLDCAKKFSF-------QLASTPEKVELKV---PMSCDGREKILENAHTVLTGE 320
Query: 183 XXXXXXXXXXXXXXXXRVGRMDAKRRCPGDENYDPKTLYLPPEFLKTLSGGQRQWWEFKS 4
GR DAK R PG YDP+TL LPP+FL L+GGQRQWWEFKS
Sbjct: 321 LAERFGQRQAEKFKFLGDGRKDAKGRRPGHPAYDPRTLSLPPQFLANLTGGQRQWWEFKS 380
Query: 3 K 1
+
Sbjct: 381 Q 381
>gb|EMS59893.1| DNA mismatch repair protein Msh6-1 [Triticum urartu]
Length = 537
Score = 83.6 bits (205), Expect = 3e-14
Identities = 47/121 (38%), Positives = 62/121 (51%)
Frame = -3
Query: 363 KKMDVESLDCTKKLNFGGNGGKIMNKSSPCAAEITSFCSPLTSDKRAQIQTAINNILTSX 184
K++DV +LDC KK +F ++ N ++ C D R +I + LT
Sbjct: 94 KQVDVGALDCAKKFSF-----QLANTPEKAEMKVPPSC-----DTRERILENAHLALTGD 143
Query: 183 XXXXXXXXXXXXXXXXRVGRMDAKRRCPGDENYDPKTLYLPPEFLKTLSGGQRQWWEFKS 4
GR DAK R P D YDP+TL+LPP+FLK L+GGQRQWWEFKS
Sbjct: 144 LSERFGSRQMEKFTFLGQGRKDAKGRRPADPAYDPRTLFLPPQFLKNLTGGQRQWWEFKS 203
Query: 3 K 1
+
Sbjct: 204 Q 204
>dbj|BAK02401.1| predicted protein [Hordeum vulgare subsp. vulgare]
Length = 1331
Score = 83.2 bits (204), Expect = 3e-14
Identities = 48/121 (39%), Positives = 64/121 (52%)
Frame = -3
Query: 363 KKMDVESLDCTKKLNFGGNGGKIMNKSSPCAAEITSFCSPLTSDKRAQIQTAINNILTSX 184
KK+DV +LDC KK +F ++P AE+ P + +I ++ LT
Sbjct: 286 KKVDVGTLDCAKKFSF-------QPANTPEKAEMKV---PTSCGTGERILENVHLALTGD 335
Query: 183 XXXXXXXXXXXXXXXXRVGRMDAKRRCPGDENYDPKTLYLPPEFLKTLSGGQRQWWEFKS 4
GR DAK + PGD YDP+TL+LPP+FLK L+GGQRQWWEFKS
Sbjct: 336 LSERFGSRQMEKFTFLGQGRKDAKGKRPGDPAYDPRTLFLPPQFLKNLTGGQRQWWEFKS 395
Query: 3 K 1
+
Sbjct: 396 Q 396
>ref|XP_004956779.1| PREDICTED: DNA mismatch repair protein MSH6-like [Setaria italica]
Length = 1135
Score = 81.6 bits (200), Expect = 1e-13
Identities = 48/121 (39%), Positives = 60/121 (49%)
Frame = -3
Query: 363 KKMDVESLDCTKKLNFGGNGGKIMNKSSPCAAEITSFCSPLTSDKRAQIQTAINNILTSX 184
KK+DV SLDC K+ +F + +N S E+ C ++ Q N LT
Sbjct: 92 KKVDVGSLDCAKRFSF-----EAVNTSGKVDPEMRISCG-----QKEQTTGNANTALTGE 141
Query: 183 XXXXXXXXXXXXXXXXRVGRMDAKRRCPGDENYDPKTLYLPPEFLKTLSGGQRQWWEFKS 4
GR DAK R PG YDP+TL LP +FLK L+GGQRQWWEFKS
Sbjct: 142 AAERFAQRDVEKFKFLGEGRKDAKGRRPGSPGYDPRTLLLPSQFLKGLTGGQRQWWEFKS 201
Query: 3 K 1
+
Sbjct: 202 Q 202
>ref|XP_006396405.1| hypothetical protein EUTSA_v10028364mg [Eutrema salsugineum]
gi|557097422|gb|ESQ37858.1| hypothetical protein
EUTSA_v10028364mg [Eutrema salsugineum]
Length = 1336
Score = 81.3 bits (199), Expect = 1e-13
Identities = 35/44 (79%), Positives = 39/44 (88%)
Frame = -3
Query: 132 VGRMDAKRRCPGDENYDPKTLYLPPEFLKTLSGGQRQWWEFKSK 1
V R DAKRR P DENYDP+TLYLPP+F+K L+GGQRQWWEFKSK
Sbjct: 355 VDRRDAKRRRPTDENYDPRTLYLPPDFVKKLTGGQRQWWEFKSK 398
>ref|XP_006286904.1| hypothetical protein CARUB_v10000048mg [Capsella rubella]
gi|482555610|gb|EOA19802.1| hypothetical protein
CARUB_v10000048mg [Capsella rubella]
Length = 1325
Score = 81.3 bits (199), Expect = 1e-13
Identities = 35/44 (79%), Positives = 39/44 (88%)
Frame = -3
Query: 132 VGRMDAKRRCPGDENYDPKTLYLPPEFLKTLSGGQRQWWEFKSK 1
V R DAKRR P DENYDP+TLYLPP+F+K L+GGQRQWWEFKSK
Sbjct: 351 VDRRDAKRRRPTDENYDPRTLYLPPDFVKKLTGGQRQWWEFKSK 394
>ref|XP_006286903.1| hypothetical protein CARUB_v10000048mg [Capsella rubella]
gi|482555609|gb|EOA19801.1| hypothetical protein
CARUB_v10000048mg [Capsella rubella]
Length = 1325
Score = 81.3 bits (199), Expect = 1e-13
Identities = 35/44 (79%), Positives = 39/44 (88%)
Frame = -3
Query: 132 VGRMDAKRRCPGDENYDPKTLYLPPEFLKTLSGGQRQWWEFKSK 1
V R DAKRR P DENYDP+TLYLPP+F+K L+GGQRQWWEFKSK
Sbjct: 351 VDRRDAKRRRPTDENYDPRTLYLPPDFVKKLTGGQRQWWEFKSK 394
>ref|XP_003625965.1| DNA mismatch repair protein Msh6-1 [Medicago truncatula]
gi|355500980|gb|AES82183.1| DNA mismatch repair protein
Msh6-1 [Medicago truncatula]
Length = 1312
Score = 80.9 bits (198), Expect = 2e-13
Identities = 44/110 (40%), Positives = 56/110 (50%)
Frame = -3
Query: 330 KKLNFGGNGGKIMNKSSPCAAEITSFCSPLTSDKRAQIQTAINNILTSXXXXXXXXXXXX 151
KK G ++ K SP A PL + + + +N+ T
Sbjct: 248 KKSKSGNEVNRVAVKLSPLA--------PLNNLEVRKTSDGADNVATGDSSERFALREAQ 299
Query: 150 XXXXXRVGRMDAKRRCPGDENYDPKTLYLPPEFLKTLSGGQRQWWEFKSK 1
R DAKRR PGDENYD +TLYLPP+F++ LSGGQ+QWWEFKSK
Sbjct: 300 KFHFLGKDRRDAKRRRPGDENYDSRTLYLPPDFVRNLSGGQKQWWEFKSK 349
>ref|NP_192116.1| DNA mismatch repair protein MSH6 [Arabidopsis thaliana]
gi|6226648|sp|O04716.2|MSH6_ARATH RecName: Full=DNA
mismatch repair protein MSH6; Short=AtMSH6; AltName:
Full=MutS protein homolog 6 gi|3912921|gb|AAC78699.1|
G/T DNA mismatch repair enzyme [Arabidopsis thaliana]
gi|5763966|emb|CAB53337.1| mismatch repair protein
msh6-1 [Arabidopsis thaliana] gi|7268591|emb|CAB80700.1|
G/T DNA mismatch repair enzyme [Arabidopsis thaliana]
gi|332656719|gb|AEE82119.1| DNA mismatch repair protein
MSH6 [Arabidopsis thaliana]
Length = 1324
Score = 80.1 bits (196), Expect = 3e-13
Identities = 34/44 (77%), Positives = 39/44 (88%)
Frame = -3
Query: 132 VGRMDAKRRCPGDENYDPKTLYLPPEFLKTLSGGQRQWWEFKSK 1
V R DAKRR P DENYDP+TLYLPP+F+K L+GGQRQWWEFK+K
Sbjct: 349 VDRRDAKRRRPTDENYDPRTLYLPPDFVKKLTGGQRQWWEFKAK 392
>ref|XP_002515294.1| ATP binding protein, putative [Ricinus communis]
gi|223545774|gb|EEF47278.1| ATP binding protein,
putative [Ricinus communis]
Length = 1306
Score = 79.0 bits (193), Expect = 6e-13
Identities = 33/42 (78%), Positives = 38/42 (90%)
Frame = -3
Query: 126 RMDAKRRCPGDENYDPKTLYLPPEFLKTLSGGQRQWWEFKSK 1
R DAKR+ PGD +YDP+TLYLPP F+K+LSGGQRQWWEFKSK
Sbjct: 315 RRDAKRKRPGDADYDPRTLYLPPSFVKSLSGGQRQWWEFKSK 356
>gb|ESW35166.1| hypothetical protein PHAVU_001G212500g [Phaseolus vulgaris]
Length = 1291
Score = 78.6 bits (192), Expect = 8e-13
Identities = 34/44 (77%), Positives = 38/44 (86%)
Frame = -3
Query: 132 VGRMDAKRRCPGDENYDPKTLYLPPEFLKTLSGGQRQWWEFKSK 1
V R DAKRR PGDENYD +TLYLPP+FL+ LS GQ+QWWEFKSK
Sbjct: 313 VDRRDAKRRRPGDENYDSRTLYLPPDFLRNLSEGQKQWWEFKSK 356
>ref|XP_002874942.1| hypothetical protein ARALYDRAFT_912022 [Arabidopsis lyrata subsp.
lyrata] gi|297320779|gb|EFH51201.1| hypothetical protein
ARALYDRAFT_912022 [Arabidopsis lyrata subsp. lyrata]
Length = 1326
Score = 78.2 bits (191), Expect = 1e-12
Identities = 34/44 (77%), Positives = 38/44 (86%)
Frame = -3
Query: 132 VGRMDAKRRCPGDENYDPKTLYLPPEFLKTLSGGQRQWWEFKSK 1
V R DAKRR DENYDP+TLYLPP+F+K L+GGQRQWWEFKSK
Sbjct: 351 VDRRDAKRRRSTDENYDPRTLYLPPDFVKKLTGGQRQWWEFKSK 394
>ref|NP_001190656.1| DNA mismatch repair protein MSH6 [Arabidopsis thaliana]
gi|332656720|gb|AEE82120.1| DNA mismatch repair protein
MSH6 [Arabidopsis thaliana]
Length = 1321
Score = 77.8 bits (190), Expect = 1e-12
Identities = 32/41 (78%), Positives = 38/41 (92%)
Frame = -3
Query: 123 MDAKRRCPGDENYDPKTLYLPPEFLKTLSGGQRQWWEFKSK 1
+DAKRR P DENYDP+TLYLPP+F+K L+GGQRQWWEFK+K
Sbjct: 349 VDAKRRRPTDENYDPRTLYLPPDFVKKLTGGQRQWWEFKAK 389
>ref|XP_006604739.1| PREDICTED: DNA mismatch repair protein MSH6-like [Glycine max]
Length = 1273
Score = 77.4 bits (189), Expect = 2e-12
Identities = 32/42 (76%), Positives = 38/42 (90%)
Frame = -3
Query: 126 RMDAKRRCPGDENYDPKTLYLPPEFLKTLSGGQRQWWEFKSK 1
R DAKRR PGDENYD +T+YLPP+FL++LS GQ+QWWEFKSK
Sbjct: 302 RRDAKRRRPGDENYDSRTIYLPPDFLRSLSDGQKQWWEFKSK 343