BLASTX nr result
ID: Zingiber23_contig00049356
seq
BLASTX 2.2.25 [Feb-01-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= Zingiber23_contig00049356
(205 letters)
Database: ./nr
37,332,560 sequences; 13,225,080,153 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
tpg|DAA37181.1| TPA: putative DNA-directed RNA polymerase family... 107 2e-21
ref|XP_002446717.1| hypothetical protein SORBIDRAFT_06g021120 [S... 107 2e-21
ref|XP_004976057.1| PREDICTED: DNA-directed RNA polymerase III s... 105 5e-21
ref|XP_002300065.1| DNA-directed RNA polymerase family protein [... 104 1e-20
ref|XP_002531828.1| DNA-directed RNA polymerase III largest subu... 103 2e-20
ref|XP_006653556.1| PREDICTED: DNA-directed RNA polymerase III s... 103 3e-20
gb|ACJ63307.1| RNA polymerase III large subunit [Asparagus offic... 103 3e-20
gb|AAS79698.1| RNA polymerase III large subunit [Psilotum nudum] 102 7e-20
gb|EEE61245.1| hypothetical protein OsJ_15297 [Oryza sativa Japo... 102 7e-20
ref|NP_001053175.1| Os04g0492300 [Oryza sativa Japonica Group] g... 102 7e-20
gb|AAS79695.1| RNA polymerase III large subunit [Cycas revoluta] 100 2e-19
gb|EXB53229.1| DNA-directed RNA polymerase III subunit RPC1 [Mor... 100 3e-19
gb|AAS79696.1| RNA polymerase III large subunit [Zamia muricata] 100 3e-19
ref|XP_003570766.1| PREDICTED: DNA-directed RNA polymerase III s... 100 3e-19
ref|XP_006488216.1| PREDICTED: DNA-directed RNA polymerase III s... 100 3e-19
ref|XP_003574945.1| PREDICTED: DNA-directed RNA polymerase III s... 100 3e-19
ref|XP_004306240.1| PREDICTED: LOW QUALITY PROTEIN: DNA-directed... 99 4e-19
ref|XP_004169848.1| PREDICTED: LOW QUALITY PROTEIN: DNA-directed... 99 4e-19
ref|XP_004148776.1| PREDICTED: DNA-directed RNA polymerase III s... 99 4e-19
gb|AAS79690.1| RNA polymerase III large subunit [Ephedra viridis] 99 4e-19
>tpg|DAA37181.1| TPA: putative DNA-directed RNA polymerase family protein [Zea mays]
Length = 1030
Score = 107 bits (267), Expect = 2e-21
Identities = 56/80 (70%), Positives = 64/80 (80%), Gaps = 12/80 (15%)
Frame = -2
Query: 204 GKQLFSVLVRPNAHTKVFVNLIVKEKIYTR------------ETMYRKYETMCPSDGYVY 61
GKQLFSVLVRPNAHTKVF+NL V+EKIY++ ETM + ETMCP+DGYVY
Sbjct: 582 GKQLFSVLVRPNAHTKVFLNLAVQEKIYSKKKGKKEGGEEVKETMCGR-ETMCPNDGYVY 640
Query: 60 FRNSELISGQLGKATLGNGN 1
FRNSEL+SGQ+GKATLGNGN
Sbjct: 641 FRNSELLSGQVGKATLGNGN 660
>ref|XP_002446717.1| hypothetical protein SORBIDRAFT_06g021120 [Sorghum bicolor]
gi|241937900|gb|EES11045.1| hypothetical protein
SORBIDRAFT_06g021120 [Sorghum bicolor]
Length = 1391
Score = 107 bits (267), Expect = 2e-21
Identities = 55/77 (71%), Positives = 64/77 (83%), Gaps = 9/77 (11%)
Frame = -2
Query: 204 GKQLFSVLVRPNAHTKVFVNLIVKEKIYTR---------ETMYRKYETMCPSDGYVYFRN 52
GKQLFSVLVRPNAHT+VF+NL V+EKIY++ ETM + ETMCP+DGYVYFRN
Sbjct: 582 GKQLFSVLVRPNAHTRVFLNLAVQEKIYSKKKGKKEAGEETMCGR-ETMCPNDGYVYFRN 640
Query: 51 SELISGQLGKATLGNGN 1
SEL+SGQ+GKATLGNGN
Sbjct: 641 SELLSGQVGKATLGNGN 657
>ref|XP_004976057.1| PREDICTED: DNA-directed RNA polymerase III subunit rpc1-like
[Setaria italica]
Length = 1397
Score = 105 bits (263), Expect = 5e-21
Identities = 56/80 (70%), Positives = 63/80 (78%), Gaps = 12/80 (15%)
Frame = -2
Query: 204 GKQLFSVLVRPNAHTKVFVNLIVKEKIYTR------------ETMYRKYETMCPSDGYVY 61
GKQLFSVLVRPNA TKVF+NL VKEKIY++ ETM + ETMCP+DGYVY
Sbjct: 585 GKQLFSVLVRPNARTKVFLNLAVKEKIYSKKKEKKEGEEEEKETMCGR-ETMCPNDGYVY 643
Query: 60 FRNSELISGQLGKATLGNGN 1
FRNSEL+SGQ+GKATLGNGN
Sbjct: 644 FRNSELLSGQVGKATLGNGN 663
>ref|XP_002300065.1| DNA-directed RNA polymerase family protein [Populus trichocarpa]
gi|222847323|gb|EEE84870.1| DNA-directed RNA polymerase
family protein [Populus trichocarpa]
Length = 1394
Score = 104 bits (259), Expect = 1e-20
Identities = 52/70 (74%), Positives = 60/70 (85%), Gaps = 2/70 (2%)
Frame = -2
Query: 204 GKQLFSVLVRPNAHTKVFVNLIVKEKIYTRETMYRKYE--TMCPSDGYVYFRNSELISGQ 31
GKQLFSVL+RP+A+ +V+VNLI+KEK Y+R K E TMCP+DGYVYFRNSELISGQ
Sbjct: 594 GKQLFSVLLRPHANVRVYVNLILKEKNYSRPNKEHKKERETMCPNDGYVYFRNSELISGQ 653
Query: 30 LGKATLGNGN 1
LGKATLGNGN
Sbjct: 654 LGKATLGNGN 663
>ref|XP_002531828.1| DNA-directed RNA polymerase III largest subunit, putative [Ricinus
communis] gi|223528524|gb|EEF30548.1| DNA-directed RNA
polymerase III largest subunit, putative [Ricinus
communis]
Length = 1383
Score = 103 bits (258), Expect = 2e-20
Identities = 51/70 (72%), Positives = 61/70 (87%), Gaps = 2/70 (2%)
Frame = -2
Query: 204 GKQLFSVLVRPNAHTKVFVNLIVKEKIYTRETM--YRKYETMCPSDGYVYFRNSELISGQ 31
GKQLFSVL+RPNA+ +V+VNLIV+EKIY++ R+ ETMCP+DG+VY RNSELISGQ
Sbjct: 566 GKQLFSVLLRPNANVRVYVNLIVREKIYSKPKKGDKREKETMCPNDGFVYIRNSELISGQ 625
Query: 30 LGKATLGNGN 1
LGKATLGNGN
Sbjct: 626 LGKATLGNGN 635
>ref|XP_006653556.1| PREDICTED: DNA-directed RNA polymerase III subunit rpc1-like [Oryza
brachyantha]
Length = 1389
Score = 103 bits (256), Expect = 3e-20
Identities = 51/68 (75%), Positives = 58/68 (85%)
Frame = -2
Query: 204 GKQLFSVLVRPNAHTKVFVNLIVKEKIYTRETMYRKYETMCPSDGYVYFRNSELISGQLG 25
GKQLFSVLVRPNA TKVF+NL VKEKIY++ ETMCP+DG+VYFRNSEL+SGQ+G
Sbjct: 582 GKQLFSVLVRPNACTKVFLNLTVKEKIYSKSR-----ETMCPNDGFVYFRNSELLSGQVG 636
Query: 24 KATLGNGN 1
K TLGNGN
Sbjct: 637 KKTLGNGN 644
>gb|ACJ63307.1| RNA polymerase III large subunit [Asparagus officinalis]
Length = 544
Score = 103 bits (256), Expect = 3e-20
Identities = 49/68 (72%), Positives = 57/68 (83%)
Frame = -2
Query: 204 GKQLFSVLVRPNAHTKVFVNLIVKEKIYTRETMYRKYETMCPSDGYVYFRNSELISGQLG 25
GKQLFSV+VRPNA T+VFVN +VKE+I+ ++T ETMCP DGYVYFRNS+LI GQLG
Sbjct: 88 GKQLFSVIVRPNAQTRVFVNFVVKERIHVKDT-----ETMCPHDGYVYFRNSDLICGQLG 142
Query: 24 KATLGNGN 1
K TLGNGN
Sbjct: 143 KVTLGNGN 150
>gb|AAS79698.1| RNA polymerase III large subunit [Psilotum nudum]
Length = 549
Score = 102 bits (253), Expect = 7e-20
Identities = 51/68 (75%), Positives = 57/68 (83%)
Frame = -2
Query: 204 GKQLFSVLVRPNAHTKVFVNLIVKEKIYTRETMYRKYETMCPSDGYVYFRNSELISGQLG 25
GKQLFSVLVRPNA T+VFVNL+V EK Y++ +TMCP+DGYVYFRNSELISGQLG
Sbjct: 90 GKQLFSVLVRPNASTRVFVNLVVMEKNYSKSGG----DTMCPNDGYVYFRNSELISGQLG 145
Query: 24 KATLGNGN 1
K TLGNGN
Sbjct: 146 KGTLGNGN 153
>gb|EEE61245.1| hypothetical protein OsJ_15297 [Oryza sativa Japonica Group]
Length = 1321
Score = 102 bits (253), Expect = 7e-20
Identities = 52/69 (75%), Positives = 59/69 (85%), Gaps = 1/69 (1%)
Frame = -2
Query: 204 GKQLFSVLVRPNAHTKVFVNLIVKEKIY-TRETMYRKYETMCPSDGYVYFRNSELISGQL 28
GKQLFSVLVRPNA TKVF+NL VKEKIY T + + E MCP+DG+VYFRNSEL+SGQ+
Sbjct: 520 GKQLFSVLVRPNACTKVFLNLTVKEKIYKTPKGSTLEPEAMCPNDGFVYFRNSELLSGQV 579
Query: 27 GKATLGNGN 1
GKATLGNGN
Sbjct: 580 GKATLGNGN 588
>ref|NP_001053175.1| Os04g0492300 [Oryza sativa Japonica Group]
gi|38346223|emb|CAE02045.2| OJ990528_30.3 [Oryza sativa
Japonica Group] gi|38347455|emb|CAD41360.2|
OSJNBa0076N16.24 [Oryza sativa Japonica Group]
gi|113564746|dbj|BAF15089.1| Os04g0492300 [Oryza sativa
Japonica Group] gi|116310339|emb|CAH67354.1|
OSIGBa0130B08.14 [Oryza sativa Indica Group]
gi|116310740|emb|CAH67535.1| H0425E08.3 [Oryza sativa
Indica Group] gi|215768005|dbj|BAH00234.1| unnamed
protein product [Oryza sativa Japonica Group]
gi|218195112|gb|EEC77539.1| hypothetical protein
OsI_16437 [Oryza sativa Indica Group]
Length = 1383
Score = 102 bits (253), Expect = 7e-20
Identities = 52/69 (75%), Positives = 59/69 (85%), Gaps = 1/69 (1%)
Frame = -2
Query: 204 GKQLFSVLVRPNAHTKVFVNLIVKEKIY-TRETMYRKYETMCPSDGYVYFRNSELISGQL 28
GKQLFSVLVRPNA TKVF+NL VKEKIY T + + E MCP+DG+VYFRNSEL+SGQ+
Sbjct: 582 GKQLFSVLVRPNACTKVFLNLTVKEKIYKTPKGSTLEPEAMCPNDGFVYFRNSELLSGQV 641
Query: 27 GKATLGNGN 1
GKATLGNGN
Sbjct: 642 GKATLGNGN 650
>gb|AAS79695.1| RNA polymerase III large subunit [Cycas revoluta]
Length = 548
Score = 100 bits (249), Expect = 2e-19
Identities = 49/68 (72%), Positives = 58/68 (85%)
Frame = -2
Query: 204 GKQLFSVLVRPNAHTKVFVNLIVKEKIYTRETMYRKYETMCPSDGYVYFRNSELISGQLG 25
GKQLFSVLVRPNA+ +VFVNL++ EK Y++ ETMCP+DG+VYFRNSELISGQ+G
Sbjct: 90 GKQLFSVLVRPNANVRVFVNLMLAEKNYSKSR-----ETMCPNDGFVYFRNSELISGQIG 144
Query: 24 KATLGNGN 1
KATLGNGN
Sbjct: 145 KATLGNGN 152
>gb|EXB53229.1| DNA-directed RNA polymerase III subunit RPC1 [Morus notabilis]
Length = 1179
Score = 100 bits (248), Expect = 3e-19
Identities = 49/70 (70%), Positives = 59/70 (84%), Gaps = 2/70 (2%)
Frame = -2
Query: 204 GKQLFSVLVRPNAHTKVFVNLIVKEKIYTRETMY--RKYETMCPSDGYVYFRNSELISGQ 31
GKQLFSVLVRPNA+ +VF+NL V+EK Y+ + R++ETMCP+DG+V FRNSELISGQ
Sbjct: 373 GKQLFSVLVRPNANVRVFLNLTVREKNYSNKLQENEREFETMCPADGFVCFRNSELISGQ 432
Query: 30 LGKATLGNGN 1
LGK TLGNGN
Sbjct: 433 LGKGTLGNGN 442
>gb|AAS79696.1| RNA polymerase III large subunit [Zamia muricata]
Length = 548
Score = 100 bits (248), Expect = 3e-19
Identities = 49/68 (72%), Positives = 58/68 (85%)
Frame = -2
Query: 204 GKQLFSVLVRPNAHTKVFVNLIVKEKIYTRETMYRKYETMCPSDGYVYFRNSELISGQLG 25
GKQLFSVLVRPNA+ +VFVNL++ EK Y++ ETMCP+DG+VYFRNSELISGQ+G
Sbjct: 90 GKQLFSVLVRPNANVRVFVNLMLTEKNYSKSG-----ETMCPNDGFVYFRNSELISGQIG 144
Query: 24 KATLGNGN 1
KATLGNGN
Sbjct: 145 KATLGNGN 152
>ref|XP_003570766.1| PREDICTED: DNA-directed RNA polymerase III subunit rpc1-like
[Brachypodium distachyon]
Length = 1400
Score = 100 bits (248), Expect = 3e-19
Identities = 51/74 (68%), Positives = 58/74 (78%), Gaps = 6/74 (8%)
Frame = -2
Query: 204 GKQLFSVLVRPNAHTKVFVNLIVKEKIYTRETMYRKY------ETMCPSDGYVYFRNSEL 43
GKQLFSVLVRPNA TKVF+NL V+EK+Y + K ETMCP+DG+VYFRNSEL
Sbjct: 587 GKQLFSVLVRPNACTKVFLNLTVEEKVYIKHKERDKKAITVLEETMCPNDGFVYFRNSEL 646
Query: 42 ISGQLGKATLGNGN 1
+SGQLGK TLGNGN
Sbjct: 647 LSGQLGKKTLGNGN 660
>ref|XP_006488216.1| PREDICTED: DNA-directed RNA polymerase III subunit rpc1-like
isoform X1 [Citrus sinensis]
gi|568870034|ref|XP_006488217.1| PREDICTED: DNA-directed
RNA polymerase III subunit rpc1-like isoform X2 [Citrus
sinensis]
Length = 1404
Score = 99.8 bits (247), Expect = 3e-19
Identities = 49/74 (66%), Positives = 60/74 (81%), Gaps = 6/74 (8%)
Frame = -2
Query: 204 GKQLFSVLVRPNAHTKVFVNLIVKEKIYTRETMYR------KYETMCPSDGYVYFRNSEL 43
GKQLFSVL+RP+A+ +V+VNL VKEK Y+ + + + ETMCP+DG+VYFRNSEL
Sbjct: 596 GKQLFSVLIRPHANMRVYVNLTVKEKTYSNKLIRTEGDEEIRIETMCPNDGFVYFRNSEL 655
Query: 42 ISGQLGKATLGNGN 1
ISGQLGKATLGNGN
Sbjct: 656 ISGQLGKATLGNGN 669
>ref|XP_003574945.1| PREDICTED: DNA-directed RNA polymerase III subunit rpc1-like
[Brachypodium distachyon]
Length = 1392
Score = 99.8 bits (247), Expect = 3e-19
Identities = 51/74 (68%), Positives = 58/74 (78%), Gaps = 6/74 (8%)
Frame = -2
Query: 204 GKQLFSVLVRPNAHTKVFVNLIVKEKIYTRETMYRKY------ETMCPSDGYVYFRNSEL 43
GKQLFSVLVRPNA TKV++NL V+EKIY + K ETMCP+DGYVYFRNSEL
Sbjct: 582 GKQLFSVLVRPNACTKVYLNLTVEEKIYMKRRERDKNAVSVLEETMCPNDGYVYFRNSEL 641
Query: 42 ISGQLGKATLGNGN 1
+SGQ+GK TLGNGN
Sbjct: 642 LSGQVGKKTLGNGN 655
>ref|XP_004306240.1| PREDICTED: LOW QUALITY PROTEIN: DNA-directed RNA polymerase III
subunit RPC1-like [Fragaria vesca subsp. vesca]
Length = 1379
Score = 99.4 bits (246), Expect = 4e-19
Identities = 49/70 (70%), Positives = 59/70 (84%), Gaps = 2/70 (2%)
Frame = -2
Query: 204 GKQLFSVLVRPNAHTKVFVNLIVKEKIY--TRETMYRKYETMCPSDGYVYFRNSELISGQ 31
GKQLFSVLVRPN++ ++F+NLIVKEK Y TR R+ E MC +DG+VYFRNSEL++GQ
Sbjct: 570 GKQLFSVLVRPNSNVRIFLNLIVKEKSYSSTRTDDGRETEAMCSNDGFVYFRNSELLAGQ 629
Query: 30 LGKATLGNGN 1
LGKATLGNGN
Sbjct: 630 LGKATLGNGN 639
>ref|XP_004169848.1| PREDICTED: LOW QUALITY PROTEIN: DNA-directed RNA polymerase III
subunit rpc1-like, partial [Cucumis sativus]
Length = 693
Score = 99.4 bits (246), Expect = 4e-19
Identities = 49/69 (71%), Positives = 60/69 (86%), Gaps = 1/69 (1%)
Frame = -2
Query: 204 GKQLFSVLVRPNAHTKVFVNLIVKEKIYTR-ETMYRKYETMCPSDGYVYFRNSELISGQL 28
GKQLFSVLVRP+A KV++NL VKEK Y++ + ++ ETMCP+DG+VYFRNSELISGQ+
Sbjct: 286 GKQLFSVLVRPHASMKVYLNLTVKEKSYSKVKGNEKERETMCPNDGFVYFRNSELISGQV 345
Query: 27 GKATLGNGN 1
GKATLGNGN
Sbjct: 346 GKATLGNGN 354
>ref|XP_004148776.1| PREDICTED: DNA-directed RNA polymerase III subunit rpc1-like
[Cucumis sativus]
Length = 1400
Score = 99.4 bits (246), Expect = 4e-19
Identities = 49/69 (71%), Positives = 60/69 (86%), Gaps = 1/69 (1%)
Frame = -2
Query: 204 GKQLFSVLVRPNAHTKVFVNLIVKEKIYTR-ETMYRKYETMCPSDGYVYFRNSELISGQL 28
GKQLFSVLVRP+A KV++NL VKEK Y++ + ++ ETMCP+DG+VYFRNSELISGQ+
Sbjct: 588 GKQLFSVLVRPHASMKVYLNLTVKEKSYSKVKGNEKERETMCPNDGFVYFRNSELISGQV 647
Query: 27 GKATLGNGN 1
GKATLGNGN
Sbjct: 648 GKATLGNGN 656
>gb|AAS79690.1| RNA polymerase III large subunit [Ephedra viridis]
Length = 548
Score = 99.4 bits (246), Expect = 4e-19
Identities = 52/68 (76%), Positives = 55/68 (80%)
Frame = -2
Query: 204 GKQLFSVLVRPNAHTKVFVNLIVKEKIYTRETMYRKYETMCPSDGYVYFRNSELISGQLG 25
GKQLFSVLVRPNA +VFVN IV EK Y++ ETMCPSDG VYFRNSELISGQLG
Sbjct: 90 GKQLFSVLVRPNAKMRVFVNFIVMEKNYSKTG-----ETMCPSDGCVYFRNSELISGQLG 144
Query: 24 KATLGNGN 1
KATLGNGN
Sbjct: 145 KATLGNGN 152