BLASTX nr result
ID: Zingiber23_contig00048720
seq
BLASTX 2.2.25 [Feb-01-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= Zingiber23_contig00048720
(521 letters)
Database: ./nr
37,332,560 sequences; 13,225,080,153 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
ref|YP_006273075.1| polyprotein [Fig badnavirus 1] gi|333493962|... 114 2e-55
ref|YP_003208050.1| putative polyprotein [Pelargonium vein bandi... 109 1e-47
gb|AHA62444.1| ORF III polyprotein, partial [Banana streak KA vi... 103 2e-47
ref|NP_039820.1| polyprotein [Commelina yellow mottle virus] gi|... 111 4e-47
gb|ACZ02411.1| polyprotein [Sugarcane bacilliform virus] 104 5e-47
gb|ACZ02408.1| polyprotein [Sugarcane bacilliform virus] 102 5e-47
ref|YP_009002585.1| polyprotein [Hibiscus bacilliform virus GD1]... 116 4e-24
ref|YP_004581513.1| RNaseH/reverse transcriptase [Sweetpotato ba... 111 9e-23
ref|YP_002117531.1| ORF3 [Cycad leaf necrosis virus] gi|19439916... 110 1e-22
gb|AHA62446.1| ORF III polyprotein, partial [Banana streak UA vi... 108 7e-22
ref|YP_008567619.1| ORF3 [Piper yellow mottle virus] gi|54035746... 108 7e-22
gb|AEP82794.1| ORF III polyprotein [Banana streak UA virus] 108 1e-21
gb|ACE76858.1| polyprotein [Citrus yellow mosaic virus] 108 1e-21
gb|AER00538.1| ORF III [Citrus yellow mosaic virus] 107 1e-21
gb|ACE76864.1| polyprotein [Citrus yellow mosaic virus] 107 1e-21
ref|NP_569153.1| poplyprotein [Citrus yellow mosaic virus] gi|16... 107 1e-21
gb|AHA62456.1| ORF III polyprotein, partial [Banana streak OL vi... 106 3e-21
ref|YP_224289.1| ORF III polyprotein [Banana streak Mysore virus... 106 3e-21
gb|AAG00348.1|AF214005_1 polyprotein [banana streak virus] 106 3e-21
gb|AEP82793.1| ORF III polyprotein [Banana streak Mysore virus] 106 3e-21
>ref|YP_006273075.1| polyprotein [Fig badnavirus 1] gi|333493962|gb|AEF56561.1|
polyprotein [Fig badnavirus 1]
Length = 1837
Score = 114 bits (286), Expect(3) = 2e-55
Identities = 51/83 (61%), Positives = 64/83 (77%), Gaps = 1/83 (1%)
Frame = -3
Query: 336 YTQKSPRGDKRMNSQDGTLVQQIKEAIQNLPDLKVPPEDCFIIIETDGCIKRWGDICKWK 157
Y + SP GDKRMN+QD LV QIKE +Q LPDL++PPEDCFII+ETDGC+ WG ICKWK
Sbjct: 1538 YAKTSPTGDKRMNAQDWKLVAQIKEEVQKLPDLELPPEDCFIILETDGCMTGWGGICKWK 1597
Query: 156 RSKFNSKATERICAYASGS-SPL 91
+ + + E++CAYASG SP+
Sbjct: 1598 PKRNDPRRMEKVCAYASGKFSPI 1620
Score = 93.6 bits (231), Expect(3) = 2e-55
Identities = 45/65 (69%), Positives = 53/65 (81%)
Frame = -2
Query: 520 EVEVLGAILGNQKIKLQSHIIKKIYDFSNKELLTKHGMRSWLCLLNYARNYIPNLDKLLS 341
EVE LGA +GNQ+I+LQ H+IKKI +F+ EL K GMRSWL +LNYAR YIPNL +LLS
Sbjct: 1476 EVEFLGAQIGNQRIRLQPHVIKKIVEFNEAELKEKKGMRSWLGILNYARAYIPNLGRLLS 1535
Query: 340 PLYAK 326
PLYAK
Sbjct: 1536 PLYAK 1540
Score = 54.7 bits (130), Expect(3) = 2e-55
Identities = 28/35 (80%), Positives = 33/35 (94%), Gaps = 1/35 (2%)
Frame = -2
Query: 103 QFSPIKSTIDAELYAVMNSLKALKIYYLD-KELII 2
+FSPIKSTIDAE++AVMN+L+ LKIYYLD KELII
Sbjct: 1616 KFSPIKSTIDAEIHAVMNTLEKLKIYYLDKKELII 1650
>ref|YP_003208050.1| putative polyprotein [Pelargonium vein banding virus]
gi|258547408|gb|ACV74337.1| putative polyprotein
[Pelargonium vein banding virus]
Length = 1970
Score = 109 bits (272), Expect(3) = 1e-47
Identities = 44/82 (53%), Positives = 63/82 (76%)
Frame = -3
Query: 336 YTQKSPRGDKRMNSQDGTLVQQIKEAIQNLPDLKVPPEDCFIIIETDGCIKRWGDICKWK 157
Y + SP GDKR+ +QD L++QIK +QNLPDLK+PP D +I++ETDGC++ WG +CKWK
Sbjct: 1653 YQKTSPHGDKRLKAQDYALIRQIKALVQNLPDLKIPPADSYIVLETDGCMEGWGGVCKWK 1712
Query: 156 RSKFNSKATERICAYASGSSPL 91
+K + K+ E++ AYASG P+
Sbjct: 1713 PNKHSPKSQEKVAAYASGKFPV 1734
Score = 85.1 bits (209), Expect(3) = 1e-47
Identities = 41/65 (63%), Positives = 47/65 (72%)
Frame = -2
Query: 520 EVEVLGAILGNQKIKLQSHIIKKIYDFSNKELLTKHGMRSWLCLLNYARNYIPNLDKLLS 341
EVE LGAI+GN IKLQ HII+KI D ++L K G+R WL +LNYAR YIPNL LL
Sbjct: 1591 EVEFLGAIIGNSTIKLQPHIIRKIADIPEEQLKEKKGLRGWLGILNYARTYIPNLSTLLG 1650
Query: 340 PLYAK 326
PLY K
Sbjct: 1651 PLYQK 1655
Score = 42.0 bits (97), Expect(3) = 1e-47
Identities = 19/33 (57%), Positives = 27/33 (81%)
Frame = -2
Query: 103 QFSPIKSTIDAELYAVMNSLKALKIYYLDKELI 5
+F +KSTIDAE++A M +L ALKI+YLD++ I
Sbjct: 1731 KFPVVKSTIDAEIHACMGTLSALKIHYLDRKEI 1763
>gb|AHA62444.1| ORF III polyprotein, partial [Banana streak KA virus]
Length = 413
Score = 103 bits (258), Expect(3) = 2e-47
Identities = 43/78 (55%), Positives = 60/78 (76%)
Frame = -3
Query: 336 YTQKSPRGDKRMNSQDGTLVQQIKEAIQNLPDLKVPPEDCFIIIETDGCIKRWGDICKWK 157
Y++ SP G+KRMNSQD +V+++KE + NLPDL++PPE +IIETDGC+ WG +CKWK
Sbjct: 245 YSKTSPNGEKRMNSQDWKIVKEVKEIVANLPDLELPPEKAIMIIETDGCMDGWGGVCKWK 304
Query: 156 RSKFNSKATERICAYASG 103
+ + +E+ICAYASG
Sbjct: 305 DNSSQPRWSEKICAYASG 322
Score = 82.4 bits (202), Expect(3) = 2e-47
Identities = 38/65 (58%), Positives = 49/65 (75%)
Frame = -2
Query: 520 EVEVLGAILGNQKIKLQSHIIKKIYDFSNKELLTKHGMRSWLCLLNYARNYIPNLDKLLS 341
+V+ LGA +GN KIKLQ HII+KI D ++EL G+R WL +LNYAR+YIP L K+L
Sbjct: 183 QVDFLGATIGNSKIKLQPHIIQKIIDIKDEELKEVKGLRKWLGILNYARSYIPKLGKILG 242
Query: 340 PLYAK 326
PLY+K
Sbjct: 243 PLYSK 247
Score = 49.3 bits (116), Expect(3) = 2e-47
Identities = 25/35 (71%), Positives = 30/35 (85%), Gaps = 1/35 (2%)
Frame = -2
Query: 103 QFSPIKSTIDAELYAVMNSLKALKIYYLD-KELII 2
+F+PIKSTIDAE+ AV+NSL KIYYLD KEL+I
Sbjct: 323 KFTPIKSTIDAEIQAVINSLDKFKIYYLDKKELVI 357
>ref|NP_039820.1| polyprotein [Commelina yellow mottle virus]
gi|130594|sp|P19199.2|POL_COYMV RecName: Full=Polyprotein
P3; Includes: RecName: Full=Putative movement protein;
Short=MP; Includes: RecName: Full=Capsid protein;
AltName: Full=Coat protein; Short=CP; Includes: RecName:
Full=Protease; Short=PR; Includes: RecName: Full=Reverse
transcriptase; Short=RT; Includes: RecName:
Full=Ribonuclease H gi|59050|emb|CAA37110.1| unnamed
protein product [Commelina yellow mottle virus]
Length = 1886
Score = 111 bits (277), Expect(3) = 4e-47
Identities = 48/75 (64%), Positives = 62/75 (82%)
Frame = -3
Query: 324 SPRGDKRMNSQDGTLVQQIKEAIQNLPDLKVPPEDCFIIIETDGCIKRWGDICKWKRSKF 145
+P GDKRMN + +V+QIKE ++NLPDL++PP+D FIIIETDGC+ WG +CKWK SK
Sbjct: 1673 APTGDKRMNPETWKMVRQIKEKVKNLPDLQLPPKDSFIIIETDGCMTGWGAVCKWKMSKH 1732
Query: 144 NSKATERICAYASGS 100
+ ++TERICAYASGS
Sbjct: 1733 DPRSTERICAYASGS 1747
Score = 79.3 bits (194), Expect(3) = 4e-47
Identities = 39/65 (60%), Positives = 49/65 (75%)
Frame = -2
Query: 520 EVEVLGAILGNQKIKLQSHIIKKIYDFSNKELLTKHGMRSWLCLLNYARNYIPNLDKLLS 341
E++ LGA LG KIKLQ HII KI DFS+++L T GMRSWL +L+YARNYI ++ KL+
Sbjct: 1607 EIDFLGASLGCTKIKLQPHIISKICDFSDEKLATPEGMRSWLGILSYARNYIQDIGKLVQ 1666
Query: 340 PLYAK 326
PL K
Sbjct: 1667 PLRQK 1671
Score = 44.3 bits (103), Expect(3) = 4e-47
Identities = 23/34 (67%), Positives = 27/34 (79%), Gaps = 1/34 (2%)
Frame = -2
Query: 100 FSPIKSTIDAELYAVMNSLKALKIYYLD-KELII 2
F+PIKSTIDAE+ A ++ L KIYYLD KELII
Sbjct: 1748 FNPIKSTIDAEIQAAIHGLDKFKIYYLDKKELII 1781
>gb|ACZ02411.1| polyprotein [Sugarcane bacilliform virus]
Length = 1837
Score = 104 bits (259), Expect(3) = 5e-47
Identities = 42/78 (53%), Positives = 61/78 (78%)
Frame = -3
Query: 336 YTQKSPRGDKRMNSQDGTLVQQIKEAIQNLPDLKVPPEDCFIIIETDGCIKRWGDICKWK 157
Y++ SP G+KRMNSQD +V+++KE + NLPDL++PPE ++IETDGC++ WG +CKWK
Sbjct: 1507 YSKTSPNGEKRMNSQDWKIVKEVKEIVANLPDLELPPEKAIMVIETDGCMEGWGGVCKWK 1566
Query: 156 RSKFNSKATERICAYASG 103
+ + +E+ICAYASG
Sbjct: 1567 DNSSQPRWSEKICAYASG 1584
Score = 80.9 bits (198), Expect(3) = 5e-47
Identities = 37/65 (56%), Positives = 49/65 (75%)
Frame = -2
Query: 520 EVEVLGAILGNQKIKLQSHIIKKIYDFSNKELLTKHGMRSWLCLLNYARNYIPNLDKLLS 341
+V+ LGA +GN KIKLQ H+I+KI D ++EL G+R WL +LNYAR+YIP L K+L
Sbjct: 1445 QVDFLGATIGNSKIKLQPHVIQKIIDRKDEELKEVKGLRKWLGILNYARSYIPKLGKILG 1504
Query: 340 PLYAK 326
PLY+K
Sbjct: 1505 PLYSK 1509
Score = 49.3 bits (116), Expect(3) = 5e-47
Identities = 25/35 (71%), Positives = 30/35 (85%), Gaps = 1/35 (2%)
Frame = -2
Query: 103 QFSPIKSTIDAELYAVMNSLKALKIYYLD-KELII 2
+F+PIKSTIDAE+ AV+NSL KIYYLD KEL+I
Sbjct: 1585 KFTPIKSTIDAEIQAVINSLDKFKIYYLDKKELVI 1619
>gb|ACZ02408.1| polyprotein [Sugarcane bacilliform virus]
Length = 1786
Score = 102 bits (255), Expect(3) = 5e-47
Identities = 42/78 (53%), Positives = 60/78 (76%)
Frame = -3
Query: 336 YTQKSPRGDKRMNSQDGTLVQQIKEAIQNLPDLKVPPEDCFIIIETDGCIKRWGDICKWK 157
Y++ SP G++RMNSQD +V+++KE + NLPDL++PPE +IIETDGC+ WG +CKWK
Sbjct: 1508 YSKTSPNGERRMNSQDWKIVKEVKEIVANLPDLELPPEKAIMIIETDGCMDGWGGVCKWK 1567
Query: 156 RSKFNSKATERICAYASG 103
+ + +E+ICAYASG
Sbjct: 1568 DNSSQPRWSEKICAYASG 1585
Score = 82.4 bits (202), Expect(3) = 5e-47
Identities = 38/65 (58%), Positives = 49/65 (75%)
Frame = -2
Query: 520 EVEVLGAILGNQKIKLQSHIIKKIYDFSNKELLTKHGMRSWLCLLNYARNYIPNLDKLLS 341
+V+ LGA +GN KIKLQ HII+KI D ++EL G+R WL +LNYAR+YIP L K+L
Sbjct: 1446 QVDFLGATIGNSKIKLQPHIIQKIIDIKDEELKEVKGLRKWLGILNYARSYIPKLGKILG 1505
Query: 340 PLYAK 326
PLY+K
Sbjct: 1506 PLYSK 1510
Score = 49.3 bits (116), Expect(3) = 5e-47
Identities = 25/35 (71%), Positives = 30/35 (85%), Gaps = 1/35 (2%)
Frame = -2
Query: 103 QFSPIKSTIDAELYAVMNSLKALKIYYLD-KELII 2
+F+PIKSTIDAE+ AV+NSL KIYYLD KEL+I
Sbjct: 1586 KFTPIKSTIDAEIQAVINSLDKFKIYYLDKKELVI 1620
>ref|YP_009002585.1| polyprotein [Hibiscus bacilliform virus GD1]
gi|584388573|gb|AHI90954.1| polyprotein [Hibiscus
bacilliform virus GD1]
Length = 1892
Score = 116 bits (290), Expect = 4e-24
Identities = 46/78 (58%), Positives = 66/78 (84%)
Frame = -3
Query: 336 YTQKSPRGDKRMNSQDGTLVQQIKEAIQNLPDLKVPPEDCFIIIETDGCIKRWGDICKWK 157
Y + SP+G+K++N +D LV+QIKE +Q LPDL++PP++CFII+ETDGC++ WG +CKWK
Sbjct: 1596 YAKVSPKGEKKLNKEDWKLVRQIKEQVQQLPDLELPPQECFIILETDGCMEGWGGVCKWK 1655
Query: 156 RSKFNSKATERICAYASG 103
+ +++ K TERICAYASG
Sbjct: 1656 KKEYDPKNTERICAYASG 1673
Score = 101 bits (252), Expect = 9e-20
Identities = 69/170 (40%), Positives = 92/170 (54%), Gaps = 1/170 (0%)
Frame = -2
Query: 520 EVEVLGAILGNQKIKLQSHIIKKIYDFSNKELLTKHGMRSWLCLLNYARNYIPNLDKLLS 341
+VE LGAIL +I+LQ HIIKK+ +F +++L G+RS+L LLNYAR YIP + +LLS
Sbjct: 1534 KVEFLGAILEAGRIQLQPHIIKKVVNFKDEDLQETKGLRSFLGLLNYARAYIPQMGRLLS 1593
Query: 340 PLYAK-EPKRR*THEFSRWDLSPTN*RSNTKPARP*GPTRRLLHYY*NRWLYKKMGRHL* 164
PLYAK PK W L + P + + G
Sbjct: 1594 PLYAKVSPKGEKKLNKEDWKLVRQIKEQVQQLPDLELPPQECFIILETDGCMEGWGGVCK 1653
Query: 163 MEKKQVQL*SHREDMCLCQWQFSPIKSTIDAELYAVMNSLKALKIYYLDK 14
+KK+ + +F PIKSTIDAE++AVMNSL+A KI+YLDK
Sbjct: 1654 WKKKEYDPKNTERICAYASGKFHPIKSTIDAEIHAVMNSLEAFKIHYLDK 1703
>ref|YP_004581513.1| RNaseH/reverse transcriptase [Sweetpotato badnavirus A]
gi|237846574|gb|ACN56746.1| RNaseH/reverse transcriptase
[Sweetpotato badnavirus A]
Length = 794
Score = 111 bits (278), Expect = 9e-23
Identities = 71/174 (40%), Positives = 92/174 (52%), Gaps = 1/174 (0%)
Frame = -2
Query: 520 EVEVLGAILGNQKIKLQSHIIKKIYDFSNKELLTKHGMRSWLCLLNYARNYIPNLDKLLS 341
EV+ LG + KI+LQ HI+KKI DF K+LLTK G+RSWL +LNYAR YIPNL KLL
Sbjct: 415 EVDFLGIKIQGNKIQLQEHILKKIGDFKEKDLLTKKGLRSWLGILNYARQYIPNLGKLLG 474
Query: 340 PLYAK-EPKRR*THEFSRWDLSPTN*RSNTKPARP*GPTRRLLHYY*NRWLYKKMGRHL* 164
PLY K P W L R + P + + G
Sbjct: 475 PLYGKTSPTGEIRFNAQDWKLVREIKRKVQQLPPLEIPPKDCCIVLEADGCMEGWGAVCK 534
Query: 163 MEKKQVQL*SHREDMCLCQWQFSPIKSTIDAELYAVMNSLKALKIYYLDKELII 2
++ S +F PIKSTIDAE++A+MN+++A KIYYLDK+ +I
Sbjct: 535 WKQSAYDPRSKERIAAYASGKFQPIKSTIDAEIFAIMNAMEAFKIYYLDKKEMI 588
>ref|YP_002117531.1| ORF3 [Cycad leaf necrosis virus] gi|194399161|gb|ACF60613.1| ORF3
[Cycad leaf necrosis virus]
Length = 1916
Score = 110 bits (276), Expect = 1e-22
Identities = 44/78 (56%), Positives = 64/78 (82%)
Frame = -3
Query: 336 YTQKSPRGDKRMNSQDGTLVQQIKEAIQNLPDLKVPPEDCFIIIETDGCIKRWGDICKWK 157
Y++ SP G+KRMN QD LV+++K+++QNLPD+++PP+ C I+IETDGC+ WG +CKWK
Sbjct: 1610 YSKVSPTGEKRMNHQDWALVKKVKDSVQNLPDMELPPKQCCIVIETDGCMDGWGGVCKWK 1669
Query: 156 RSKFNSKATERICAYASG 103
++ +SK TE+ CAYASG
Sbjct: 1670 LTRHDSKTTEKTCAYASG 1687
Score = 97.1 bits (240), Expect = 2e-18
Identities = 69/203 (33%), Positives = 97/203 (47%), Gaps = 31/203 (15%)
Frame = -2
Query: 517 VEVLGAILGNQKIKLQSHIIKKIYDFSNKELLTKHGMRSWLCLLNYARNYIPNLDKLLSP 338
++ LGA +G KI+LQ HIIKKI + +EL T G+R+WL +LNYAR+YIPNL K L P
Sbjct: 1549 IDFLGATIGRSKIRLQPHIIKKITEAKEEELQTTKGLRAWLGILNYARSYIPNLGKTLGP 1608
Query: 337 LYAKEPKRR*THEFSRWDLSPTN*RSNTKPARP*GPTRRLLHYY*NRWLYKKMGRHL*ME 158
LY+K +SPT +R+ H W K +
Sbjct: 1609 LYSK--------------VSPTG-------------EKRMNH---QDWALVKKVKDSVQN 1638
Query: 157 KKQVQL*SHR------EDMCL------CQW-------------------QFSPIKSTIDA 71
++L + D C+ C+W +FSP+KSTIDA
Sbjct: 1639 LPDMELPPKQCCIVIETDGCMDGWGGVCKWKLTRHDSKTTEKTCAYASGKFSPVKSTIDA 1698
Query: 70 ELYAVMNSLKALKIYYLDKELII 2
E+ AV+ SL KI+YLDK+ ++
Sbjct: 1699 EIQAVICSLDKFKIFYLDKQEVV 1721
>gb|AHA62446.1| ORF III polyprotein, partial [Banana streak UA virus]
Length = 411
Score = 108 bits (270), Expect = 7e-22
Identities = 72/175 (41%), Positives = 91/175 (52%), Gaps = 2/175 (1%)
Frame = -2
Query: 520 EVEVLGAILGNQKIKLQSHIIKKIYDFSNKELLTKHGMRSWLCLLNYARNYIPNLDKLLS 341
+V+ LGA +GN +IKLQ HIIKKI D ++EL G+R WL +LNYARNYIPNL K L
Sbjct: 181 QVDFLGATIGNSRIKLQPHIIKKIADIKDEELKEVRGLRKWLGILNYARNYIPNLGKTLG 240
Query: 340 PLYAK-EPKRR*THEFSRWDLSPTN*RSNTKPARP*GPTRRLLHYY*NRWLYKKMGRHL* 164
PLY+K P W + P + + + G
Sbjct: 241 PLYSKTSPNGERRMNSQDWAIVKKIKEQVLNLPDMELPPKEAVMIIETDGCMEGWGGVCK 300
Query: 163 MEKKQVQL*SHREDMCLCQWQFSPIKSTIDAELYAVMNSLKALKIYYLD-KELII 2
+K Q +F+PIKSTIDAE+ AV+NSL+ KIYYLD KELII
Sbjct: 301 WKKNTSQPRLEERVCAYASGKFTPIKSTIDAEVQAVINSLEKFKIYYLDKKELII 355
>ref|YP_008567619.1| ORF3 [Piper yellow mottle virus] gi|540357465|gb|AGV08293.1| ORF3
[Piper yellow mottle virus]
Length = 1925
Score = 108 bits (270), Expect = 7e-22
Identities = 75/205 (36%), Positives = 98/205 (47%), Gaps = 33/205 (16%)
Frame = -2
Query: 517 VEVLGAILGNQKIKLQSHIIKKIYDFSNKELLTKHGMRSWLCLLNYARNYIPNLDKLLSP 338
++ LGA +GN K+KLQ HI+KKI DF+ L K +RSWL +LNYAR YIPNL ++L P
Sbjct: 1593 IDFLGATIGNSKVKLQEHIVKKILDFNTDGLEDKKNLRSWLGILNYARAYIPNLGRILGP 1652
Query: 337 LYAKEPKRR*THEFSRWDLSPTN*RSNTKPARP*GPTRRLLHYY*NRWLYKKMGRHL*ME 158
LYAK +SPT R + W + + E
Sbjct: 1653 LYAK--------------VSPTGERKMNQ----------------QDWGIVAQIKKIIQE 1682
Query: 157 KKQVQL*SHREDMCL--------------CQW-------------------QFSPIKSTI 77
+++L ED C+ C+W +F P KSTI
Sbjct: 1683 LPELEL--PPEDCCIVIETDGCMSGWGGVCKWKPMACDPKNTERVCAYCSGKFDPPKSTI 1740
Query: 76 DAELYAVMNSLKALKIYYLDKELII 2
DAE++AVMNSL+ LKIYYLDK II
Sbjct: 1741 DAEIHAVMNSLEKLKIYYLDKREII 1765
>gb|AEP82794.1| ORF III polyprotein [Banana streak UA virus]
Length = 411
Score = 108 bits (269), Expect = 1e-21
Identities = 72/175 (41%), Positives = 91/175 (52%), Gaps = 2/175 (1%)
Frame = -2
Query: 520 EVEVLGAILGNQKIKLQSHIIKKIYDFSNKELLTKHGMRSWLCLLNYARNYIPNLDKLLS 341
+V+ LGA +GN +IKLQ HIIKKI D ++EL G+R WL +LNYARNYIPNL K L
Sbjct: 181 QVDFLGATIGNSRIKLQPHIIKKIADIKDEELKEVRGLRKWLGILNYARNYIPNLGKTLG 240
Query: 340 PLYAK-EPKRR*THEFSRWDLSPTN*RSNTKPARP*GPTRRLLHYY*NRWLYKKMGRHL* 164
PLY+K P W + P + + + G
Sbjct: 241 PLYSKTSPNGERRMNSQDWAIVRKIKEQVLNLPDMELPPKEAVMIIETDGCMEGWGGVCK 300
Query: 163 MEKKQVQL*SHREDMCLCQWQFSPIKSTIDAELYAVMNSLKALKIYYLD-KELII 2
+K Q +F+PIKSTIDAE+ AV+NSL+ KIYYLD KELII
Sbjct: 301 WKKNTSQPRLEERVCAYASGKFTPIKSTIDAEVQAVINSLEKFKIYYLDKKELII 355
>gb|ACE76858.1| polyprotein [Citrus yellow mosaic virus]
Length = 1967
Score = 108 bits (269), Expect = 1e-21
Identities = 43/78 (55%), Positives = 62/78 (79%)
Frame = -3
Query: 336 YTQKSPRGDKRMNSQDGTLVQQIKEAIQNLPDLKVPPEDCFIIIETDGCIKRWGDICKWK 157
Y + SP G++RMN QD L+ +I+ +QNLP L++PP DCFIIIETDGC+ WG +CKWK
Sbjct: 1647 YAKVSPTGERRMNRQDWALIDKIRAQVQNLPALELPPADCFIIIETDGCMDGWGGVCKWK 1706
Query: 156 RSKFNSKATERICAYASG 103
++++ +++ER+CAYASG
Sbjct: 1707 LAQYDPRSSERVCAYASG 1724
Score = 103 bits (257), Expect = 2e-20
Identities = 71/171 (41%), Positives = 92/171 (53%), Gaps = 2/171 (1%)
Frame = -2
Query: 520 EVEVLGAILGNQKIKLQSHIIKKIYDFSNKELLTKHGMRSWLCLLNYARNYIPNLDKLLS 341
E+E LGAI+ N IKLQ HI++K+ F+NK+L G+RSWL LLNYAR+YIP++ +LLS
Sbjct: 1585 EIEFLGAIIHNGLIKLQPHIVQKLLTFTNKQLEEVKGLRSWLGLLNYARSYIPHMGRLLS 1644
Query: 340 PLYAK-EPKRR*THEFSRWDL-SPTN*RSNTKPARP*GPTRRLLHYY*NRWLYKKMGRHL 167
PLYAK P W L + PA P + + + G
Sbjct: 1645 PLYAKVSPTGERRMNRQDWALIDKIRAQVQNLPALELPPADCFIIIETDGCM-DGWGGVC 1703
Query: 166 *MEKKQVQL*SHREDMCLCQWQFSPIKSTIDAELYAVMNSLKALKIYYLDK 14
+ Q S +F+P KSTIDAE++AVMNSL KIYYLDK
Sbjct: 1704 KWKLAQYDPRSSERVCAYASGKFNPPKSTIDAEIHAVMNSLNNFKIYYLDK 1754
>gb|AER00538.1| ORF III [Citrus yellow mosaic virus]
Length = 1982
Score = 107 bits (268), Expect = 1e-21
Identities = 43/78 (55%), Positives = 62/78 (79%)
Frame = -3
Query: 336 YTQKSPRGDKRMNSQDGTLVQQIKEAIQNLPDLKVPPEDCFIIIETDGCIKRWGDICKWK 157
Y + SP G++RMN QD L+ +I+ +QNLP L++PP DCFIIIETDGC+ WG +CKWK
Sbjct: 1662 YAKVSPTGERRMNRQDWALIDKIRAQVQNLPALELPPADCFIIIETDGCMDGWGGVCKWK 1721
Query: 156 RSKFNSKATERICAYASG 103
++++ +++ER+CAYASG
Sbjct: 1722 VAQYDPRSSERVCAYASG 1739
Score = 99.4 bits (246), Expect = 4e-19
Identities = 71/174 (40%), Positives = 95/174 (54%), Gaps = 5/174 (2%)
Frame = -2
Query: 520 EVEVLGAILGNQKIKLQSHIIKKIYDFSNKELLTKHGMRSWLCLLNYARNYIPNLDKLLS 341
E+ LGAI+ IKLQ HI++K+ F+NK+L G+RSWL LLNYAR+YIP++ +LLS
Sbjct: 1600 EIGFLGAIIHKGLIKLQPHIVQKLLTFTNKQLEEVKGLRSWLGLLNYARSYIPHMGRLLS 1659
Query: 340 PLYAK-EPKRR*THEFSRWDL-SPTN*RSNTKPARP*GPTRRLLHYY*NRWLYKKMGRHL 167
PLYAK P W L + PA P + + + G
Sbjct: 1660 PLYAKVSPTGERRMNRQDWALIDKIRAQVQNLPALELPPADCFIIIETDGCMDGWGG--- 1716
Query: 166 *MEKKQVQL*SHREDMCLCQW---QFSPIKSTIDAELYAVMNSLKALKIYYLDK 14
+ K +V R +C + +F+P KSTIDAE++AVMNSL KIYYLDK
Sbjct: 1717 -VCKWKVAQYDPRSSERVCAYASGKFNPPKSTIDAEIHAVMNSLNNFKIYYLDK 1769
>gb|ACE76864.1| polyprotein [Citrus yellow mosaic virus]
Length = 1968
Score = 107 bits (268), Expect = 1e-21
Identities = 43/78 (55%), Positives = 62/78 (79%)
Frame = -3
Query: 336 YTQKSPRGDKRMNSQDGTLVQQIKEAIQNLPDLKVPPEDCFIIIETDGCIKRWGDICKWK 157
Y + SP G++RMN QD L+ +I+ +QNLP L++PP DCFIIIETDGC+ WG +CKWK
Sbjct: 1648 YAKVSPTGERRMNRQDWALIDKIRAQVQNLPALELPPADCFIIIETDGCMDGWGGVCKWK 1707
Query: 156 RSKFNSKATERICAYASG 103
++++ +++ER+CAYASG
Sbjct: 1708 IAQYDPRSSERVCAYASG 1725
Score = 103 bits (258), Expect = 2e-20
Identities = 72/174 (41%), Positives = 97/174 (55%), Gaps = 5/174 (2%)
Frame = -2
Query: 520 EVEVLGAILGNQKIKLQSHIIKKIYDFSNKELLTKHGMRSWLCLLNYARNYIPNLDKLLS 341
E+E LGAI+ N IKLQ HI++K+ F+NK+L G+RSWL LLNYAR+YIP++ +LLS
Sbjct: 1586 EIEFLGAIIHNGLIKLQPHIVQKLLTFTNKQLEEVKGLRSWLGLLNYARSYIPHMGRLLS 1645
Query: 340 PLYAK-EPKRR*THEFSRWDL-SPTN*RSNTKPARP*GPTRRLLHYY*NRWLYKKMGRHL 167
PLYAK P W L + PA P + + + G
Sbjct: 1646 PLYAKVSPTGERRMNRQDWALIDKIRAQVQNLPALELPPADCFIIIETDGCMDGWGG--- 1702
Query: 166 *MEKKQVQL*SHREDMCLCQW---QFSPIKSTIDAELYAVMNSLKALKIYYLDK 14
+ K ++ R +C + +F+P KSTIDAE++AVMNSL KIYYLDK
Sbjct: 1703 -VCKWKIAQYDPRSSERVCAYASGKFNPPKSTIDAEIHAVMNSLNNFKIYYLDK 1755
>ref|NP_569153.1| poplyprotein [Citrus yellow mosaic virus]
gi|16416939|gb|AAL18495.1|AF347695_3 unknown [citrus
yellow mosaic virus]
Length = 1983
Score = 107 bits (268), Expect = 1e-21
Identities = 43/78 (55%), Positives = 62/78 (79%)
Frame = -3
Query: 336 YTQKSPRGDKRMNSQDGTLVQQIKEAIQNLPDLKVPPEDCFIIIETDGCIKRWGDICKWK 157
Y + SP G++RMN QD L+ +I+ +QNLP L++PP DCFIIIETDGC+ WG +CKWK
Sbjct: 1663 YAKVSPTGERRMNRQDWALIDKIRAQVQNLPALELPPADCFIIIETDGCMDGWGGVCKWK 1722
Query: 156 RSKFNSKATERICAYASG 103
++++ +++ER+CAYASG
Sbjct: 1723 VAQYDPRSSERVCAYASG 1740
Score = 102 bits (253), Expect = 7e-20
Identities = 72/174 (41%), Positives = 96/174 (55%), Gaps = 5/174 (2%)
Frame = -2
Query: 520 EVEVLGAILGNQKIKLQSHIIKKIYDFSNKELLTKHGMRSWLCLLNYARNYIPNLDKLLS 341
E+E LGAI+ IKLQ HI++K+ F+NK+L G+RSWL LLNYAR+YIP++ +LLS
Sbjct: 1601 EIEFLGAIIHKGLIKLQPHIVQKLLTFTNKQLEEVKGLRSWLGLLNYARSYIPHMGRLLS 1660
Query: 340 PLYAK-EPKRR*THEFSRWDL-SPTN*RSNTKPARP*GPTRRLLHYY*NRWLYKKMGRHL 167
PLYAK P W L + PA P + + + G
Sbjct: 1661 PLYAKVSPTGERRMNRQDWALIDKIRAQVQNLPALELPPADCFIIIETDGCMDGWGG--- 1717
Query: 166 *MEKKQVQL*SHREDMCLCQW---QFSPIKSTIDAELYAVMNSLKALKIYYLDK 14
+ K +V R +C + +F+P KSTIDAE++AVMNSL KIYYLDK
Sbjct: 1718 -VCKWKVAQYDPRSSERVCAYASGKFNPPKSTIDAEIHAVMNSLNNFKIYYLDK 1770
>gb|AHA62456.1| ORF III polyprotein, partial [Banana streak OL virus]
Length = 413
Score = 106 bits (265), Expect = 3e-21
Identities = 70/175 (40%), Positives = 92/175 (52%), Gaps = 2/175 (1%)
Frame = -2
Query: 520 EVEVLGAILGNQKIKLQSHIIKKIYDFSNKELLTKHGMRSWLCLLNYARNYIPNLDKLLS 341
+++ LGA +GN KIKLQ HIIKKI + ++EL G+R WL +LNYAR+YIP L K+L
Sbjct: 183 QIDFLGATIGNSKIKLQPHIIKKIIEMKDEELKEVKGLRKWLGILNYARSYIPKLGKILG 242
Query: 340 PLYAK-EPKRR*THEFSRWDLSPTN*RSNTKPARP*GPTRRLLHYY*NRWLYKKMGRHL* 164
PLYAK P W + T P + + + G
Sbjct: 243 PLYAKTSPNGERRMNTQDWKIVKEVKEVVTNLPELELPPEKAIMIIETDGCMEGWGGVCK 302
Query: 163 MEKKQVQL*SHREDMCLCQWQFSPIKSTIDAELYAVMNSLKALKIYYLD-KELII 2
+ +Q + +F+PIKSTIDAE+ AV+NSL KIYYLD KELII
Sbjct: 303 WKTDSLQPRWSEKICAYASGKFTPIKSTIDAEIQAVINSLDKFKIYYLDKKELII 357
>ref|YP_224289.1| ORF III polyprotein [Banana streak Mysore virus]
gi|58618162|gb|AAW80648.1| ORF III polyprotein [Banana
streak Mysore virus]
Length = 1869
Score = 106 bits (265), Expect = 3e-21
Identities = 74/175 (42%), Positives = 92/175 (52%), Gaps = 3/175 (1%)
Frame = -2
Query: 517 VEVLGAILGNQKIKLQSHIIKKIYDFSNKELLTKHGMRSWLCLLNYARNYIPNLDKLLSP 338
++ LGA +GN KIKLQ HIIKKI DF + L G+R+WL +LNYARNYIPNL K L P
Sbjct: 1483 IDFLGASIGNSKIKLQPHIIKKIADFDDHRLKETKGLRAWLGILNYARNYIPNLGKTLGP 1542
Query: 337 LYAK-EPKRR*THEFSRWDLSPTN*RSNTKPARP*GPTRRLLHYY*NRWLYKKMGRHL*M 161
LY+K P W L R P + + G
Sbjct: 1543 LYSKISPNGEKRMNAQDWALVTQVKRQVQNLPELELPPEKCKMVIETDGCMEGWGGVC-- 1600
Query: 160 EKKQVQL*SHREDMC-LCQWQFSPIKSTIDAELYAVMNSLKALKIYYLD-KELII 2
K + +E +C +F+PIKSTIDAE+ AV+NSL KIYYLD KEL+I
Sbjct: 1601 --KWTTVGKAQEKVCAYASGKFTPIKSTIDAEVQAVINSLDKFKIYYLDKKELLI 1653
>gb|AAG00348.1|AF214005_1 polyprotein [banana streak virus]
Length = 543
Score = 106 bits (265), Expect = 3e-21
Identities = 74/175 (42%), Positives = 92/175 (52%), Gaps = 3/175 (1%)
Frame = -2
Query: 517 VEVLGAILGNQKIKLQSHIIKKIYDFSNKELLTKHGMRSWLCLLNYARNYIPNLDKLLSP 338
++ LGA +GN KIKLQ HIIKKI DF + L G+R+WL +LNYARNYIPNL K L P
Sbjct: 157 IDFLGASIGNSKIKLQPHIIKKIADFDDHRLKETKGLRAWLGILNYARNYIPNLGKTLGP 216
Query: 337 LYAK-EPKRR*THEFSRWDLSPTN*RSNTKPARP*GPTRRLLHYY*NRWLYKKMGRHL*M 161
LY+K P W L R P + + G
Sbjct: 217 LYSKISPNGEKRMNAQDWALVTQVKRQVQNLPELELPPEKCKMVIETDGCMEGWGGVC-- 274
Query: 160 EKKQVQL*SHREDMC-LCQWQFSPIKSTIDAELYAVMNSLKALKIYYLD-KELII 2
K + +E +C +F+PIKSTIDAE+ AV+NSL KIYYLD KEL+I
Sbjct: 275 --KWTTVGKAQEKVCAYASGKFTPIKSTIDAEVQAVINSLDKFKIYYLDKKELLI 327
>gb|AEP82793.1| ORF III polyprotein [Banana streak Mysore virus]
Length = 410
Score = 106 bits (265), Expect = 3e-21
Identities = 74/175 (42%), Positives = 92/175 (52%), Gaps = 3/175 (1%)
Frame = -2
Query: 517 VEVLGAILGNQKIKLQSHIIKKIYDFSNKELLTKHGMRSWLCLLNYARNYIPNLDKLLSP 338
++ LGA +GN KIKLQ HIIKKI DF + L G+R+WL +LNYARNYIPNL K L P
Sbjct: 184 IDFLGASIGNSKIKLQPHIIKKIADFDDHRLKETKGLRAWLGILNYARNYIPNLGKTLGP 243
Query: 337 LYAK-EPKRR*THEFSRWDLSPTN*RSNTKPARP*GPTRRLLHYY*NRWLYKKMGRHL*M 161
LY+K P W L R P + + G
Sbjct: 244 LYSKISPNGEKRMNAQDWALVTQVKRQVQNLPELELPPEKCKMVIETDGCMEGWGGVC-- 301
Query: 160 EKKQVQL*SHREDMC-LCQWQFSPIKSTIDAELYAVMNSLKALKIYYLD-KELII 2
K + +E +C +F+PIKSTIDAE+ AV+NSL KIYYLD KEL+I
Sbjct: 302 --KWTTVGKAQEKVCAYASGKFTPIKSTIDAEVQAVINSLDKFKIYYLDKKELLI 354