BLASTX nr result
ID: Zingiber23_contig00048344
seq
BLASTX 2.2.25 [Feb-01-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= Zingiber23_contig00048344
(606 letters)
Database: ./nr
37,332,560 sequences; 13,225,080,153 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gb|EXB88442.1| RNA pseudourine synthase 6 [Morus notabilis] 114 2e-23
ref|XP_002304926.2| pseudouridine synthase family protein [Popul... 113 4e-23
ref|XP_002264641.1| PREDICTED: RNA pseudourine synthase 6, chlor... 108 1e-21
gb|EMJ14726.1| hypothetical protein PRUPE_ppa020640mg [Prunus pe... 104 2e-20
ref|XP_002518515.1| ribosomal pseudouridine synthase, putative [... 103 4e-20
ref|XP_004158048.1| PREDICTED: LOW QUALITY PROTEIN: RNA pseudour... 100 5e-19
ref|XP_004151517.1| PREDICTED: RNA pseudourine synthase 6, chlor... 100 5e-19
ref|XP_002518514.1| ribosomal pseudouridine synthase, putative [... 100 5e-19
ref|XP_006449066.1| hypothetical protein CICLE_v10015055mg [Citr... 99 9e-19
gb|EPS61068.1| hypothetical protein M569_13732 [Genlisea aurea] 99 9e-19
gb|EOY28643.1| Pseudouridine synthase family protein [Theobroma ... 99 9e-19
ref|XP_006858058.1| hypothetical protein AMTR_s00062p00043970 [A... 99 1e-18
ref|XP_006468002.1| PREDICTED: RNA pseudouridine synthase 6, chl... 98 2e-18
ref|XP_004158017.1| PREDICTED: RNA pseudourine synthase 6, chlor... 97 3e-18
ref|XP_004153393.1| PREDICTED: RNA pseudourine synthase 6, chlor... 97 3e-18
ref|XP_004145102.1| PREDICTED: RNA pseudourine synthase 6, chlor... 97 3e-18
ref|XP_002867828.1| pseudouridine synthase family protein [Arabi... 94 2e-17
ref|XP_006284907.1| hypothetical protein CARUB_v10006203mg [Caps... 94 4e-17
ref|XP_006594433.1| PREDICTED: RNA pseudouridine synthase 6, chl... 91 2e-16
ref|XP_003541622.2| PREDICTED: RNA pseudouridine synthase 6, chl... 91 2e-16
>gb|EXB88442.1| RNA pseudourine synthase 6 [Morus notabilis]
Length = 446
Score = 114 bits (285), Expect = 2e-23
Identities = 60/105 (57%), Positives = 69/105 (65%)
Frame = -1
Query: 315 LNVGSNHKCHHSPTEQRHWVLQKKTYIAQSTLVKASTLESVCLTNGYPEYSRLLPCPSHN 136
L VG N HSP K+ + QST + + N YP+Y RLLPCPSHN
Sbjct: 45 LQVGWNS---HSPN--------KRPFACQSTTTDVAQINPASSLNCYPKYDRLLPCPSHN 93
Query: 135 QFPRIEHLVVLEEGFILDYISKALNLPPLFVADLVHFGAVHYALV 1
PR+EHLVV EEG +LDYI KAL+LPPLFVADL+HFGAVHYALV
Sbjct: 94 LPPRVEHLVVTEEGRVLDYICKALDLPPLFVADLIHFGAVHYALV 138
>ref|XP_002304926.2| pseudouridine synthase family protein [Populus trichocarpa]
gi|550340110|gb|EEE85437.2| pseudouridine synthase
family protein [Populus trichocarpa]
Length = 470
Score = 113 bits (283), Expect = 4e-23
Identities = 55/85 (64%), Positives = 63/85 (74%)
Frame = -1
Query: 255 LQKKTYIAQSTLVKASTLESVCLTNGYPEYSRLLPCPSHNQFPRIEHLVVLEEGFILDYI 76
L K+ +S + + NGYPEY+RLLPCPSHN PRIEHLVV EEG +LDYI
Sbjct: 45 LSKRKLSCESLKQDIACTTATSSVNGYPEYTRLLPCPSHNSPPRIEHLVVSEEGPVLDYI 104
Query: 75 SKALNLPPLFVADLVHFGAVHYALV 1
KAL+LPPLFVADL+HFGAVHYALV
Sbjct: 105 CKALDLPPLFVADLIHFGAVHYALV 129
>ref|XP_002264641.1| PREDICTED: RNA pseudourine synthase 6, chloroplastic [Vitis
vinifera] gi|302144082|emb|CBI23187.3| unnamed protein
product [Vitis vinifera]
Length = 472
Score = 108 bits (270), Expect = 1e-21
Identities = 61/114 (53%), Positives = 71/114 (62%), Gaps = 4/114 (3%)
Frame = -1
Query: 330 TLANSLNVGSNHK----CHHSPTEQRHWVLQKKTYIAQSTLVKASTLESVCLTNGYPEYS 163
TLA+S HK C ++PT R L +S + NGYPEY
Sbjct: 35 TLASSNVFSRRHKRVVWCSNNPTCTRE-------------LTASSDSANTSSVNGYPEYH 81
Query: 162 RLLPCPSHNQFPRIEHLVVLEEGFILDYISKALNLPPLFVADLVHFGAVHYALV 1
RLLPCPS N PR+EHLVV E G +LDYISKAL+LPPLFVADL+HFGAV+YALV
Sbjct: 82 RLLPCPSQNGPPRVEHLVVSEGGCVLDYISKALDLPPLFVADLIHFGAVYYALV 135
>gb|EMJ14726.1| hypothetical protein PRUPE_ppa020640mg [Prunus persica]
Length = 477
Score = 104 bits (260), Expect = 2e-20
Identities = 50/84 (59%), Positives = 62/84 (73%)
Frame = -1
Query: 252 QKKTYIAQSTLVKASTLESVCLTNGYPEYSRLLPCPSHNQFPRIEHLVVLEEGFILDYIS 73
++ T+ +S + SV NGYPEY+RLLPCPSHN PR+EHLVV E G +L+YI
Sbjct: 55 KRTTFACESLKQGVTQPTSVSSVNGYPEYTRLLPCPSHNGPPRVEHLVVSEGGPVLEYIC 114
Query: 72 KALNLPPLFVADLVHFGAVHYALV 1
K L+LPP FVADL+HFGAV+YALV
Sbjct: 115 KTLDLPPQFVADLIHFGAVYYALV 138
>ref|XP_002518515.1| ribosomal pseudouridine synthase, putative [Ricinus communis]
gi|223542360|gb|EEF43902.1| ribosomal pseudouridine
synthase, putative [Ricinus communis]
Length = 476
Score = 103 bits (257), Expect = 4e-20
Identities = 58/112 (51%), Positives = 75/112 (66%), Gaps = 2/112 (1%)
Frame = -1
Query: 330 TLANSLNVGSNHKCHHSPTEQRHWVLQ--KKTYIAQSTLVKASTLESVCLTNGYPEYSRL 157
TLA S + S H+ HH + L ++ + +S+ + + + NG +Y RL
Sbjct: 26 TLA-STHAYSFHR-HHPKNALARFSLNSHERKFCCESSKPEVAYTTNTSCVNGNSDYDRL 83
Query: 156 LPCPSHNQFPRIEHLVVLEEGFILDYISKALNLPPLFVADLVHFGAVHYALV 1
LPCPS+N+ PRIEHLVVLEEG +LDYI KAL+LPPLFVADL+ FGAVHYALV
Sbjct: 84 LPCPSYNRPPRIEHLVVLEEGPVLDYICKALDLPPLFVADLIDFGAVHYALV 135
>ref|XP_004158048.1| PREDICTED: LOW QUALITY PROTEIN: RNA pseudourine synthase 6,
chloroplastic-like [Cucumis sativus]
Length = 475
Score = 99.8 bits (247), Expect = 5e-19
Identities = 43/61 (70%), Positives = 55/61 (90%)
Frame = -1
Query: 183 NGYPEYSRLLPCPSHNQFPRIEHLVVLEEGFILDYISKALNLPPLFVADLVHFGAVHYAL 4
NGYP+Y RLLPCPS ++ PR+EH+VVLE G +++YI K+LNLPPL+VADL+HFGAV+YAL
Sbjct: 74 NGYPQYHRLLPCPSFSKPPRVEHMVVLEAGPVMEYICKSLNLPPLYVADLIHFGAVYYAL 133
Query: 3 V 1
V
Sbjct: 134 V 134
>ref|XP_004151517.1| PREDICTED: RNA pseudourine synthase 6, chloroplastic-like [Cucumis
sativus]
Length = 475
Score = 99.8 bits (247), Expect = 5e-19
Identities = 43/61 (70%), Positives = 55/61 (90%)
Frame = -1
Query: 183 NGYPEYSRLLPCPSHNQFPRIEHLVVLEEGFILDYISKALNLPPLFVADLVHFGAVHYAL 4
NGYP+Y RLLPCPS ++ PR+EH+VVLE G +++YI K+LNLPPL+VADL+HFGAV+YAL
Sbjct: 74 NGYPQYHRLLPCPSFSKPPRVEHMVVLEAGPVMEYICKSLNLPPLYVADLIHFGAVYYAL 133
Query: 3 V 1
V
Sbjct: 134 V 134
>ref|XP_002518514.1| ribosomal pseudouridine synthase, putative [Ricinus communis]
gi|223542359|gb|EEF43901.1| ribosomal pseudouridine
synthase, putative [Ricinus communis]
Length = 395
Score = 99.8 bits (247), Expect = 5e-19
Identities = 46/56 (82%), Positives = 51/56 (91%)
Frame = -1
Query: 168 YSRLLPCPSHNQFPRIEHLVVLEEGFILDYISKALNLPPLFVADLVHFGAVHYALV 1
Y RLLPCPS N+ PR+EHLVVLEEG +LDYI KAL+LPPLFVADL+HFGAVHYALV
Sbjct: 3 YDRLLPCPSQNRPPRVEHLVVLEEGPVLDYICKALDLPPLFVADLIHFGAVHYALV 58
>ref|XP_006449066.1| hypothetical protein CICLE_v10015055mg [Citrus clementina]
gi|557551677|gb|ESR62306.1| hypothetical protein
CICLE_v10015055mg [Citrus clementina]
Length = 487
Score = 99.0 bits (245), Expect = 9e-19
Identities = 50/93 (53%), Positives = 65/93 (69%), Gaps = 1/93 (1%)
Frame = -1
Query: 276 TEQRHWVLQK-KTYIAQSTLVKASTLESVCLTNGYPEYSRLLPCPSHNQFPRIEHLVVLE 100
+ R++V + K ++ T A+ + + GYPEY RLLPCPS N PR+EHLVV E
Sbjct: 49 SSNRNFVCESWKRHVFTHTDTTATAAAATPSSYGYPEYHRLLPCPSQNCPPRVEHLVVSE 108
Query: 99 EGFILDYISKALNLPPLFVADLVHFGAVHYALV 1
G +L+YI + LNLPPLFVADL+HFGAV+YALV
Sbjct: 109 GGPVLEYICRELNLPPLFVADLIHFGAVYYALV 141
>gb|EPS61068.1| hypothetical protein M569_13732 [Genlisea aurea]
Length = 461
Score = 99.0 bits (245), Expect = 9e-19
Identities = 49/88 (55%), Positives = 62/88 (70%), Gaps = 2/88 (2%)
Frame = -1
Query: 258 VLQKKTYIAQSTLVKASTLESVC--LTNGYPEYSRLLPCPSHNQFPRIEHLVVLEEGFIL 85
VL+K+ +ST ++ + +C +N YP Y RLLPCP N PR+EHLVV E G +L
Sbjct: 34 VLKKRCLCCRST-ASSAIVNKICSSTSNSYPPYGRLLPCPIENTLPRVEHLVVSEGGPVL 92
Query: 84 DYISKALNLPPLFVADLVHFGAVHYALV 1
+YIS AL +PPLFVADL+HFGAV YALV
Sbjct: 93 EYISNALEIPPLFVADLIHFGAVFYALV 120
>gb|EOY28643.1| Pseudouridine synthase family protein [Theobroma cacao]
Length = 491
Score = 99.0 bits (245), Expect = 9e-19
Identities = 45/59 (76%), Positives = 52/59 (88%)
Frame = -1
Query: 177 YPEYSRLLPCPSHNQFPRIEHLVVLEEGFILDYISKALNLPPLFVADLVHFGAVHYALV 1
YPEY RLLPCPSHN PR+EHLVV E G +L+YI KAL+LPP+FVADL+HFGAV+YALV
Sbjct: 93 YPEYHRLLPCPSHNGPPRVEHLVVSEGGPVLEYICKALDLPPMFVADLIHFGAVYYALV 151
>ref|XP_006858058.1| hypothetical protein AMTR_s00062p00043970 [Amborella trichopoda]
gi|548862161|gb|ERN19525.1| hypothetical protein
AMTR_s00062p00043970 [Amborella trichopoda]
Length = 477
Score = 98.6 bits (244), Expect = 1e-18
Identities = 48/82 (58%), Positives = 61/82 (74%)
Frame = -1
Query: 246 KTYIAQSTLVKASTLESVCLTNGYPEYSRLLPCPSHNQFPRIEHLVVLEEGFILDYISKA 67
K + +++ +A+T S +N YP Y+ LLPCPS N PRIEHL+V E G +LDYI KA
Sbjct: 57 KRLVGSTSITQANTTISTSPSNVYPGYTSLLPCPSKNGPPRIEHLIVSEGGPVLDYICKA 116
Query: 66 LNLPPLFVADLVHFGAVHYALV 1
L+LP LFVADL+HFGAV+YALV
Sbjct: 117 LDLPTLFVADLIHFGAVYYALV 138
>ref|XP_006468002.1| PREDICTED: RNA pseudouridine synthase 6, chloroplastic-like isoform
X1 [Citrus sinensis] gi|568827302|ref|XP_006468003.1|
PREDICTED: RNA pseudouridine synthase 6,
chloroplastic-like isoform X2 [Citrus sinensis]
Length = 487
Score = 98.2 bits (243), Expect = 2e-18
Identities = 50/87 (57%), Positives = 60/87 (68%)
Frame = -1
Query: 261 WVLQKKTYIAQSTLVKASTLESVCLTNGYPEYSRLLPCPSHNQFPRIEHLVVLEEGFILD 82
W T+ + + A+T S GYPEY RLLPCPS N PR+EHLVV E G +L+
Sbjct: 59 WKRHVFTHTDTAAIAAATTPSSY----GYPEYHRLLPCPSQNCPPRVEHLVVSEGGPVLE 114
Query: 81 YISKALNLPPLFVADLVHFGAVHYALV 1
YI + LNLPPLFVADL+HFGAV+YALV
Sbjct: 115 YICRELNLPPLFVADLIHFGAVYYALV 141
>ref|XP_004158017.1| PREDICTED: RNA pseudourine synthase 6, chloroplastic-like [Cucumis
sativus]
Length = 475
Score = 97.1 bits (240), Expect = 3e-18
Identities = 43/61 (70%), Positives = 54/61 (88%)
Frame = -1
Query: 183 NGYPEYSRLLPCPSHNQFPRIEHLVVLEEGFILDYISKALNLPPLFVADLVHFGAVHYAL 4
NGYP+Y RLLPC S N PR+EHLVVLE G +++YISK+L+LPP++VADL+HFGAV+YAL
Sbjct: 74 NGYPQYHRLLPCTSFNVPPRVEHLVVLEGGPVMEYISKSLDLPPMYVADLIHFGAVYYAL 133
Query: 3 V 1
V
Sbjct: 134 V 134
>ref|XP_004153393.1| PREDICTED: RNA pseudourine synthase 6, chloroplastic-like, partial
[Cucumis sativus]
Length = 287
Score = 97.1 bits (240), Expect = 3e-18
Identities = 43/61 (70%), Positives = 54/61 (88%)
Frame = -1
Query: 183 NGYPEYSRLLPCPSHNQFPRIEHLVVLEEGFILDYISKALNLPPLFVADLVHFGAVHYAL 4
NGYP+Y RLLPC S N PR+EHLVVLE G +++YISK+L+LPP++VADL+HFGAV+YAL
Sbjct: 74 NGYPQYHRLLPCTSFNVPPRVEHLVVLEGGPVMEYISKSLDLPPMYVADLIHFGAVYYAL 133
Query: 3 V 1
V
Sbjct: 134 V 134
>ref|XP_004145102.1| PREDICTED: RNA pseudourine synthase 6, chloroplastic-like [Cucumis
sativus]
Length = 475
Score = 97.1 bits (240), Expect = 3e-18
Identities = 43/61 (70%), Positives = 54/61 (88%)
Frame = -1
Query: 183 NGYPEYSRLLPCPSHNQFPRIEHLVVLEEGFILDYISKALNLPPLFVADLVHFGAVHYAL 4
NGYP+Y RLLPC S N PR+EHLVVLE G +++YISK+L+LPP++VADL+HFGAV+YAL
Sbjct: 74 NGYPQYHRLLPCTSFNVPPRVEHLVVLEGGPVMEYISKSLDLPPMYVADLIHFGAVYYAL 133
Query: 3 V 1
V
Sbjct: 134 V 134
>ref|XP_002867828.1| pseudouridine synthase family protein [Arabidopsis lyrata subsp.
lyrata] gi|297313664|gb|EFH44087.1| pseudouridine
synthase family protein [Arabidopsis lyrata subsp.
lyrata]
Length = 476
Score = 94.4 bits (233), Expect = 2e-17
Identities = 42/63 (66%), Positives = 56/63 (88%), Gaps = 1/63 (1%)
Frame = -1
Query: 186 TNGYPEYSRLLPCPSHNQFPRIEHLVVLEEGFIL-DYISKALNLPPLFVADLVHFGAVHY 10
T+GYPEY+RL+PCP+HN PRIEH+VVLE+ ++ ++ISK L+LPPL+V+DL+ FGAVHY
Sbjct: 74 TSGYPEYNRLMPCPAHNLPPRIEHMVVLEDDVLVSEFISKQLDLPPLYVSDLIRFGAVHY 133
Query: 9 ALV 1
ALV
Sbjct: 134 ALV 136
>ref|XP_006284907.1| hypothetical protein CARUB_v10006203mg [Capsella rubella]
gi|482553612|gb|EOA17805.1| hypothetical protein
CARUB_v10006203mg [Capsella rubella]
Length = 479
Score = 93.6 bits (231), Expect = 4e-17
Identities = 45/78 (57%), Positives = 61/78 (78%), Gaps = 1/78 (1%)
Frame = -1
Query: 231 QSTLVKASTLESVCLTNGYPEYSRLLPCPSHNQFPRIEHLVVLEEG-FILDYISKALNLP 55
Q+TL +ST +GYPEY+RL+PCP++N PRIEH+VVLE+ + ++IS+ L+LP
Sbjct: 69 QTTLTSSST-------SGYPEYNRLMPCPAYNNPPRIEHMVVLEDDVLVAEFISRQLDLP 121
Query: 54 PLFVADLVHFGAVHYALV 1
PL+VADL+ FGAVHYALV
Sbjct: 122 PLYVADLIRFGAVHYALV 139
>ref|XP_006594433.1| PREDICTED: RNA pseudouridine synthase 6, chloroplastic-like isoform
X2 [Glycine max]
Length = 390
Score = 90.9 bits (224), Expect = 2e-16
Identities = 42/78 (53%), Positives = 57/78 (73%)
Frame = -1
Query: 234 AQSTLVKASTLESVCLTNGYPEYSRLLPCPSHNQFPRIEHLVVLEEGFILDYISKALNLP 55
A+ + A L + ++ +P+Y RLLPCPSH PRIEHLV+ E G +L+ I KAL+LP
Sbjct: 63 AEFSTTDAGNLTATSSSDSFPKYDRLLPCPSHKNPPRIEHLVISEGGPVLELICKALDLP 122
Query: 54 PLFVADLVHFGAVHYALV 1
PL+V+DL+ FGAV+YALV
Sbjct: 123 PLYVSDLIQFGAVYYALV 140
>ref|XP_003541622.2| PREDICTED: RNA pseudouridine synthase 6, chloroplastic-like isoform
X1 [Glycine max]
Length = 478
Score = 90.9 bits (224), Expect = 2e-16
Identities = 42/78 (53%), Positives = 57/78 (73%)
Frame = -1
Query: 234 AQSTLVKASTLESVCLTNGYPEYSRLLPCPSHNQFPRIEHLVVLEEGFILDYISKALNLP 55
A+ + A L + ++ +P+Y RLLPCPSH PRIEHLV+ E G +L+ I KAL+LP
Sbjct: 63 AEFSTTDAGNLTATSSSDSFPKYDRLLPCPSHKNPPRIEHLVISEGGPVLELICKALDLP 122
Query: 54 PLFVADLVHFGAVHYALV 1
PL+V+DL+ FGAV+YALV
Sbjct: 123 PLYVSDLIQFGAVYYALV 140