BLASTX nr result
ID: Zingiber23_contig00047943
seq
BLASTX 2.2.25 [Feb-01-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= Zingiber23_contig00047943
(350 letters)
Database: ./nr
37,332,560 sequences; 13,225,080,153 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
ref|XP_002531020.1| pentatricopeptide repeat-containing protein,... 83 4e-14
ref|NP_001058444.1| Os06g0694600 [Oryza sativa Japonica Group] g... 82 6e-14
gb|EAZ38130.1| hypothetical protein OsJ_22479 [Oryza sativa Japo... 82 6e-14
ref|XP_006845688.1| hypothetical protein AMTR_s00019p00236380 [A... 81 2e-13
ref|XP_006368282.1| pentatricopeptide repeat-containing family p... 79 5e-13
ref|XP_002326772.1| predicted protein [Populus trichocarpa] 79 5e-13
ref|XP_006402489.1| hypothetical protein EUTSA_v10006474mg [Eutr... 78 1e-12
gb|EMT03355.1| hypothetical protein F775_02553 [Aegilops tauschii] 77 2e-12
ref|XP_006656419.1| PREDICTED: pentatricopeptide repeat-containi... 76 5e-12
gb|EOY26249.1| Pentatricopeptide repeat-containing protein, puta... 76 5e-12
ref|XP_006290409.1| hypothetical protein CARUB_v10019081mg [Caps... 76 5e-12
ref|XP_002878376.1| pentatricopeptide repeat-containing protein ... 76 5e-12
ref|XP_006485771.1| PREDICTED: pentatricopeptide repeat-containi... 75 7e-12
ref|XP_006440940.1| hypothetical protein CICLE_v10019823mg [Citr... 75 7e-12
ref|XP_003560536.1| PREDICTED: LOW QUALITY PROTEIN: pentatricope... 75 7e-12
ref|XP_004237781.1| PREDICTED: pentatricopeptide repeat-containi... 75 9e-12
ref|XP_006359825.1| PREDICTED: pentatricopeptide repeat-containi... 75 1e-11
ref|XP_004966151.1| PREDICTED: pentatricopeptide repeat-containi... 75 1e-11
ref|XP_004308198.1| PREDICTED: pentatricopeptide repeat-containi... 74 2e-11
ref|NP_191695.1| pentatricopeptide repeat-containing protein [Ar... 74 2e-11
>ref|XP_002531020.1| pentatricopeptide repeat-containing protein, putative [Ricinus
communis] gi|223529395|gb|EEF31358.1| pentatricopeptide
repeat-containing protein, putative [Ricinus communis]
Length = 530
Score = 82.8 bits (203), Expect = 4e-14
Identities = 41/86 (47%), Positives = 55/86 (63%)
Frame = +2
Query: 92 VKFNIQPVKFRLSLRHHADCKRMQCLEALHHLDEKEKKNCFPTVQIITTLIHGAGLAKNP 271
V+ + ++R A CK+ + L +E EK NC PT++ ITTLIHGAG+A+N
Sbjct: 264 VRRGFKATSLTYNIRIDAYCKKGYFGDGLRIFEEMEKDNCPPTLETITTLIHGAGVARNI 323
Query: 272 HHARKLFDEMGERGLTPDRAAYNALV 349
H AR LFDE+G+R L PD AYNAL+
Sbjct: 324 HKARHLFDEIGKRNLKPDTGAYNALI 349
>ref|NP_001058444.1| Os06g0694600 [Oryza sativa Japonica Group]
gi|53791827|dbj|BAD53893.1| pentatricopeptide
repeat-containing protein-like [Oryza sativa Japonica
Group] gi|53792848|dbj|BAD53881.1| pentatricopeptide
repeat-containing protein-like [Oryza sativa Japonica
Group] gi|113596484|dbj|BAF20358.1| Os06g0694600 [Oryza
sativa Japonica Group]
Length = 484
Score = 82.4 bits (202), Expect = 6e-14
Identities = 41/74 (55%), Positives = 56/74 (75%), Gaps = 1/74 (1%)
Frame = +2
Query: 131 LRHHADCKRMQCLEALHHLDEKEKK-NCFPTVQIITTLIHGAGLAKNPHHARKLFDEMGE 307
+R A CK+ + L+AL LDE K+ NC PT+Q+ TTLI+GAG+ +N AR+LFDEMG+
Sbjct: 237 VRMDAYCKKGRFLDALDLLDEMRKRENCRPTLQVFTTLIYGAGIVRNAIRARQLFDEMGQ 296
Query: 308 RGLTPDRAAYNALV 349
G+TPDR A+NAL+
Sbjct: 297 WGVTPDRGAHNALM 310
>gb|EAZ38130.1| hypothetical protein OsJ_22479 [Oryza sativa Japonica Group]
Length = 464
Score = 82.4 bits (202), Expect = 6e-14
Identities = 41/74 (55%), Positives = 56/74 (75%), Gaps = 1/74 (1%)
Frame = +2
Query: 131 LRHHADCKRMQCLEALHHLDEKEKK-NCFPTVQIITTLIHGAGLAKNPHHARKLFDEMGE 307
+R A CK+ + L+AL LDE K+ NC PT+Q+ TTLI+GAG+ +N AR+LFDEMG+
Sbjct: 217 VRMDAYCKKGRFLDALDLLDEMRKRENCRPTLQVFTTLIYGAGIVRNAIRARQLFDEMGQ 276
Query: 308 RGLTPDRAAYNALV 349
G+TPDR A+NAL+
Sbjct: 277 WGVTPDRGAHNALM 290
>ref|XP_006845688.1| hypothetical protein AMTR_s00019p00236380 [Amborella trichopoda]
gi|548848260|gb|ERN07363.1| hypothetical protein
AMTR_s00019p00236380 [Amborella trichopoda]
Length = 491
Score = 80.9 bits (198), Expect = 2e-13
Identities = 39/80 (48%), Positives = 53/80 (66%)
Frame = +2
Query: 110 PVKFRLSLRHHADCKRMQCLEALHHLDEKEKKNCFPTVQIITTLIHGAGLAKNPHHARKL 289
P ++R A CK+ + EA+ +E E+KNC PTV+ TTLIHG G++ NP A+K+
Sbjct: 231 PNNVSYNIRIDALCKKGRSREAIKLREEMEEKNCSPTVETFTTLIHGLGISHNPKLAQKV 290
Query: 290 FDEMGERGLTPDRAAYNALV 349
FD+M RGL PD AYNAL+
Sbjct: 291 FDDMVSRGLNPDTGAYNALI 310
>ref|XP_006368282.1| pentatricopeptide repeat-containing family protein [Populus
trichocarpa] gi|550346186|gb|ERP64851.1|
pentatricopeptide repeat-containing family protein
[Populus trichocarpa]
Length = 512
Score = 79.3 bits (194), Expect = 5e-13
Identities = 39/86 (45%), Positives = 54/86 (62%)
Frame = +2
Query: 92 VKFNIQPVKFRLSLRHHADCKRMQCLEALHHLDEKEKKNCFPTVQIITTLIHGAGLAKNP 271
VK +P +R A CK+ +AL +E E+ NC PT++ +TTLIHGAG+A+N
Sbjct: 245 VKRGFKPSSSSYGIRIDAYCKKGYFADALRIFEEMERANCLPTLETVTTLIHGAGVARNA 304
Query: 272 HHARKLFDEMGERGLTPDRAAYNALV 349
AR+LFDE+ +R L D AYNAL+
Sbjct: 305 MKARELFDEIPKRNLQADTGAYNALI 330
>ref|XP_002326772.1| predicted protein [Populus trichocarpa]
Length = 512
Score = 79.3 bits (194), Expect = 5e-13
Identities = 39/86 (45%), Positives = 54/86 (62%)
Frame = +2
Query: 92 VKFNIQPVKFRLSLRHHADCKRMQCLEALHHLDEKEKKNCFPTVQIITTLIHGAGLAKNP 271
VK +P +R A CK+ +AL +E E+ NC PT++ +TTLIHGAG+A+N
Sbjct: 245 VKRGFKPSSSSYGIRIDAYCKKGYFADALRIFEEMERANCLPTLETVTTLIHGAGVARNA 304
Query: 272 HHARKLFDEMGERGLTPDRAAYNALV 349
AR+LFDE+ +R L D AYNAL+
Sbjct: 305 MKARELFDEIPKRNLQADTGAYNALI 330
>ref|XP_006402489.1| hypothetical protein EUTSA_v10006474mg [Eutrema salsugineum]
gi|557103588|gb|ESQ43942.1| hypothetical protein
EUTSA_v10006474mg [Eutrema salsugineum]
Length = 498
Score = 78.2 bits (191), Expect = 1e-12
Identities = 40/86 (46%), Positives = 56/86 (65%)
Frame = +2
Query: 92 VKFNIQPVKFRLSLRHHADCKRMQCLEALHHLDEKEKKNCFPTVQIITTLIHGAGLAKNP 271
VK +P +R CK+ EAL +E +++N T+QI+TTLIHG+G+A+N
Sbjct: 238 VKRGFKPNSVTYGIRIDGFCKKRNFGEALRLFEEMDRRNLEATLQILTTLIHGSGVARNK 297
Query: 272 HHARKLFDEMGERGLTPDRAAYNALV 349
AR+LFDE+ +RGLTPD AYNAL+
Sbjct: 298 IKARQLFDEIPKRGLTPDCGAYNALM 323
>gb|EMT03355.1| hypothetical protein F775_02553 [Aegilops tauschii]
Length = 543
Score = 77.0 bits (188), Expect = 2e-12
Identities = 39/74 (52%), Positives = 54/74 (72%), Gaps = 1/74 (1%)
Frame = +2
Query: 131 LRHHADCKRMQCLEALHHLDEKEKK-NCFPTVQIITTLIHGAGLAKNPHHARKLFDEMGE 307
+R A CK+ + L+AL LDE K+ NC PT+Q+ TTLI+GAG+ ++ AR LFDEM +
Sbjct: 296 VRMDAYCKKGRFLDALQLLDEMRKRENCKPTLQVFTTLIYGAGIVRDAARARLLFDEMEQ 355
Query: 308 RGLTPDRAAYNALV 349
G+TPDR A+NAL+
Sbjct: 356 CGVTPDRGAHNALM 369
>ref|XP_006656419.1| PREDICTED: pentatricopeptide repeat-containing protein
At3g61360-like [Oryza brachyantha]
Length = 246
Score = 75.9 bits (185), Expect = 5e-12
Identities = 38/70 (54%), Positives = 52/70 (74%), Gaps = 1/70 (1%)
Frame = +2
Query: 143 ADCKRMQCLEALHHLDEKEKK-NCFPTVQIITTLIHGAGLAKNPHHARKLFDEMGERGLT 319
A CK+ + L+AL LDE K+ NC PT+Q+ TTLI+GAG+ +N AR+LFDEM + G+
Sbjct: 3 AYCKKGRFLDALDLLDEMRKRENCKPTLQVFTTLIYGAGIVRNAVRARQLFDEMEQWGVI 62
Query: 320 PDRAAYNALV 349
PDR A+NAL+
Sbjct: 63 PDRGAHNALM 72
>gb|EOY26249.1| Pentatricopeptide repeat-containing protein, putative [Theobroma
cacao]
Length = 512
Score = 75.9 bits (185), Expect = 5e-12
Identities = 38/86 (44%), Positives = 56/86 (65%)
Frame = +2
Query: 92 VKFNIQPVKFRLSLRHHADCKRMQCLEALHHLDEKEKKNCFPTVQIITTLIHGAGLAKNP 271
V+ +P ++R A CK+ + L L+E E+ +C PT++ ITTLIHGAG+A+N
Sbjct: 249 VRRGFKPNSMTYNIRIDAYCKKGCLGDGLRLLEEMEQVHCLPTLETITTLIHGAGVARNM 308
Query: 272 HHARKLFDEMGERGLTPDRAAYNALV 349
A++LFDE+ +R L PD AYNAL+
Sbjct: 309 PKAKQLFDEIPKRNLQPDVGAYNALI 334
>ref|XP_006290409.1| hypothetical protein CARUB_v10019081mg [Capsella rubella]
gi|482559116|gb|EOA23307.1| hypothetical protein
CARUB_v10019081mg [Capsella rubella]
Length = 495
Score = 75.9 bits (185), Expect = 5e-12
Identities = 39/86 (45%), Positives = 56/86 (65%)
Frame = +2
Query: 92 VKFNIQPVKFRLSLRHHADCKRMQCLEALHHLDEKEKKNCFPTVQIITTLIHGAGLAKNP 271
VK +P +R CK+ EAL ++ ++++ TVQI+TTLIHG+G+A+N
Sbjct: 234 VKRGFEPNSVTYGIRMDGFCKKRNFGEALRLFEDMDRRHFDITVQILTTLIHGSGVARNK 293
Query: 272 HHARKLFDEMGERGLTPDRAAYNALV 349
AR+LFDE+ +RGLTPD AYNAL+
Sbjct: 294 IKARQLFDEIPKRGLTPDCGAYNALM 319
>ref|XP_002878376.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
subsp. lyrata] gi|297324214|gb|EFH54635.1|
pentatricopeptide repeat-containing protein [Arabidopsis
lyrata subsp. lyrata]
Length = 498
Score = 75.9 bits (185), Expect = 5e-12
Identities = 38/86 (44%), Positives = 56/86 (65%)
Frame = +2
Query: 92 VKFNIQPVKFRLSLRHHADCKRMQCLEALHHLDEKEKKNCFPTVQIITTLIHGAGLAKNP 271
VK +P +R CK+ EAL ++ ++++ + TVQI+TTLIHG+G+ +N
Sbjct: 237 VKRGFKPNSVTYGIRIDGFCKKRNFGEALRLFEDMDRQDIYITVQILTTLIHGSGVVRNK 296
Query: 272 HHARKLFDEMGERGLTPDRAAYNALV 349
AR+LFDE+ +RGLTPD AYNAL+
Sbjct: 297 IKARQLFDEIPKRGLTPDCGAYNALM 322
>ref|XP_006485771.1| PREDICTED: pentatricopeptide repeat-containing protein
At3g61360-like [Citrus sinensis]
Length = 499
Score = 75.5 bits (184), Expect = 7e-12
Identities = 37/81 (45%), Positives = 52/81 (64%)
Frame = +2
Query: 107 QPVKFRLSLRHHADCKRMQCLEALHHLDEKEKKNCFPTVQIITTLIHGAGLAKNPHHARK 286
+P ++R CK+ +A+ +E E+ C P++Q ITTLIHGAGL +N H AR+
Sbjct: 244 RPSVVTYNIRIDGYCKKGCFGDAMRLFEEMERVACLPSLQTITTLIHGAGLVRNIHQARQ 303
Query: 287 LFDEMGERGLTPDRAAYNALV 349
LFDEM +R L PD AYNA++
Sbjct: 304 LFDEMPKRNLKPDIGAYNAMI 324
>ref|XP_006440940.1| hypothetical protein CICLE_v10019823mg [Citrus clementina]
gi|557543202|gb|ESR54180.1| hypothetical protein
CICLE_v10019823mg [Citrus clementina]
Length = 500
Score = 75.5 bits (184), Expect = 7e-12
Identities = 37/81 (45%), Positives = 52/81 (64%)
Frame = +2
Query: 107 QPVKFRLSLRHHADCKRMQCLEALHHLDEKEKKNCFPTVQIITTLIHGAGLAKNPHHARK 286
+P ++R CK+ +A+ +E E+ C P++Q ITTLIHGAGL +N H AR+
Sbjct: 244 RPSVVTYNIRIDGYCKKGCFGDAMRLFEEMERVACLPSLQTITTLIHGAGLVRNIHQARQ 303
Query: 287 LFDEMGERGLTPDRAAYNALV 349
LFDEM +R L PD AYNA++
Sbjct: 304 LFDEMPKRNLKPDIGAYNAMI 324
>ref|XP_003560536.1| PREDICTED: LOW QUALITY PROTEIN: pentatricopeptide repeat-containing
protein At3g61360-like [Brachypodium distachyon]
Length = 419
Score = 75.5 bits (184), Expect = 7e-12
Identities = 37/74 (50%), Positives = 56/74 (75%), Gaps = 1/74 (1%)
Frame = +2
Query: 131 LRHHADCKRMQCLEALHHLDE-KEKKNCFPTVQIITTLIHGAGLAKNPHHARKLFDEMGE 307
+R A CK+ + L+AL LDE + ++NC PT+Q+ TTLI+GAG+A++ AR+LFDEM +
Sbjct: 241 VRMDALCKKGRFLDALEMLDEMRRRENCEPTLQVFTTLIYGAGIARDAARARRLFDEMEQ 300
Query: 308 RGLTPDRAAYNALV 349
+TPDR A++AL+
Sbjct: 301 CAVTPDRGAHDALM 314
>ref|XP_004237781.1| PREDICTED: pentatricopeptide repeat-containing protein
At3g61360-like [Solanum lycopersicum]
Length = 504
Score = 75.1 bits (183), Expect = 9e-12
Identities = 41/91 (45%), Positives = 59/91 (64%)
Frame = +2
Query: 77 VKEGKVKFNIQPVKFRLSLRHHADCKRMQCLEALHHLDEKEKKNCFPTVQIITTLIHGAG 256
VK G F + V + S+R A CK+ + +AL +E ++ NC PTV+ ITTLIHGAG
Sbjct: 243 VKRG---FKLNSVTY--SIRIDAYCKKGRFGDALKLFEEMDRVNCLPTVETITTLIHGAG 297
Query: 257 LAKNPHHARKLFDEMGERGLTPDRAAYNALV 349
+A+N A++LF+E+ +R PD AYNAL+
Sbjct: 298 IARNISKAKELFNELFKRNFQPDTGAYNALL 328
>ref|XP_006359825.1| PREDICTED: pentatricopeptide repeat-containing protein
At3g61360-like isoform X1 [Solanum tuberosum]
gi|565388118|ref|XP_006359826.1| PREDICTED:
pentatricopeptide repeat-containing protein
At3g61360-like isoform X2 [Solanum tuberosum]
gi|565388120|ref|XP_006359827.1| PREDICTED:
pentatricopeptide repeat-containing protein
At3g61360-like isoform X3 [Solanum tuberosum]
gi|565388122|ref|XP_006359828.1| PREDICTED:
pentatricopeptide repeat-containing protein
At3g61360-like isoform X4 [Solanum tuberosum]
Length = 504
Score = 74.7 bits (182), Expect = 1e-11
Identities = 41/91 (45%), Positives = 59/91 (64%)
Frame = +2
Query: 77 VKEGKVKFNIQPVKFRLSLRHHADCKRMQCLEALHHLDEKEKKNCFPTVQIITTLIHGAG 256
VK G F + V + S+R A CK+ + +AL +E ++ NC PTV+ ITTLIHGAG
Sbjct: 243 VKRG---FKLNSVTY--SIRIDAYCKKGRFGDALKLFEEMDRVNCLPTVETITTLIHGAG 297
Query: 257 LAKNPHHARKLFDEMGERGLTPDRAAYNALV 349
+A+N A++LF+E+ +R PD AYNAL+
Sbjct: 298 IARNISKAKELFNEIFKRNFQPDTGAYNALL 328
>ref|XP_004966151.1| PREDICTED: pentatricopeptide repeat-containing protein
At3g61360-like [Setaria italica]
Length = 485
Score = 74.7 bits (182), Expect = 1e-11
Identities = 37/74 (50%), Positives = 54/74 (72%), Gaps = 1/74 (1%)
Frame = +2
Query: 131 LRHHADCKRMQCLEALHHLDE-KEKKNCFPTVQIITTLIHGAGLAKNPHHARKLFDEMGE 307
+R A CK+ + +AL LDE + ++NC PT+Q+ TTLI+GAG+ +N A+ LFDEM +
Sbjct: 238 VRMDAYCKKGRFADALELLDEMRRRENCKPTLQVFTTLIYGAGIVRNAARAQLLFDEMEK 297
Query: 308 RGLTPDRAAYNALV 349
G+TPDR A+NAL+
Sbjct: 298 WGVTPDRGAHNALM 311
>ref|XP_004308198.1| PREDICTED: pentatricopeptide repeat-containing protein
At3g61360-like [Fragaria vesca subsp. vesca]
Length = 499
Score = 74.3 bits (181), Expect = 2e-11
Identities = 38/81 (46%), Positives = 52/81 (64%)
Frame = +2
Query: 107 QPVKFRLSLRHHADCKRMQCLEALHHLDEKEKKNCFPTVQIITTLIHGAGLAKNPHHARK 286
+P ++R A CKR +AL +E E+ N PT++ ITTLIHGAG+ +NP A++
Sbjct: 251 KPNSITYNIRIDAYCKRGCFADALRLFEEMERANLSPTLETITTLIHGAGVVRNPIKAQQ 310
Query: 287 LFDEMGERGLTPDRAAYNALV 349
LFDE+ R L PD AYNAL+
Sbjct: 311 LFDEIHLRNLLPDTGAYNALM 331
>ref|NP_191695.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
gi|75264589|sp|Q9M2C8.1|PP291_ARATH RecName:
Full=Pentatricopeptide repeat-containing protein
At3g61360 gi|6850903|emb|CAB71066.1| putative protein
[Arabidopsis thaliana] gi|25054868|gb|AAN71923.1|
unknown protein [Arabidopsis thaliana]
gi|332646669|gb|AEE80190.1| pentatricopeptide
repeat-containing protein [Arabidopsis thaliana]
Length = 498
Score = 74.3 bits (181), Expect = 2e-11
Identities = 39/86 (45%), Positives = 55/86 (63%)
Frame = +2
Query: 92 VKFNIQPVKFRLSLRHHADCKRMQCLEALHHLDEKEKKNCFPTVQIITTLIHGAGLAKNP 271
VK +P +R CK+ EAL ++ ++ + TVQI+TTLIHG+G+A+N
Sbjct: 237 VKRGFKPNSVTYGIRIDGFCKKRNFGEALRLFEDMDRLDFDITVQILTTLIHGSGVARNK 296
Query: 272 HHARKLFDEMGERGLTPDRAAYNALV 349
AR+LFDE+ +RGLTPD AYNAL+
Sbjct: 297 IKARQLFDEISKRGLTPDCGAYNALM 322