BLASTX nr result
ID: Zingiber23_contig00047758
seq
BLASTX 2.2.25 [Feb-01-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= Zingiber23_contig00047758
(540 letters)
Database: ./nr
37,332,560 sequences; 13,225,080,153 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
ref|XP_004305601.1| PREDICTED: pentatricopeptide repeat-containi... 119 3e-25
gb|EOY29159.1| Tetratricopeptide repeat-like superfamily protein... 117 2e-24
emb|CCW28838.1| putative glycosyl phosphatidyl inositol transami... 117 2e-24
emb|CCW28846.1| putative glycosyl phosphatidyl inositol transami... 116 4e-24
ref|XP_003635109.1| PREDICTED: pentatricopeptide repeat-containi... 116 4e-24
ref|XP_004498596.1| PREDICTED: pentatricopeptide repeat-containi... 112 5e-23
ref|XP_002527978.1| pentatricopeptide repeat-containing protein,... 111 1e-22
ref|XP_003541593.1| PREDICTED: pentatricopeptide repeat-containi... 107 2e-21
gb|ESW05757.1| hypothetical protein PHAVU_011G207000g [Phaseolus... 106 3e-21
gb|EXB60441.1| hypothetical protein L484_014894 [Morus notabilis] 105 7e-21
dbj|BAC41999.1| unknown protein [Arabidopsis thaliana] 105 9e-21
ref|NP_568460.1| pentatricopeptide repeat-containing protein [Ar... 105 9e-21
ref|XP_006371854.1| pentatricopeptide repeat-containing family p... 103 2e-20
ref|XP_006598110.1| PREDICTED: pentatricopeptide repeat-containi... 103 3e-20
ref|XP_006287361.1| hypothetical protein CARUB_v10000559mg [Caps... 102 4e-20
ref|XP_002332091.1| predicted protein [Populus trichocarpa] 98 1e-18
ref|XP_002872129.1| predicted protein [Arabidopsis lyrata subsp.... 97 2e-18
gb|EMJ26174.1| hypothetical protein PRUPE_ppa020759mg, partial [... 97 3e-18
ref|XP_006394734.1| hypothetical protein EUTSA_v10003880mg [Eutr... 94 2e-17
ref|XP_006450123.1| hypothetical protein CICLE_v10007859mg [Citr... 93 4e-17
>ref|XP_004305601.1| PREDICTED: pentatricopeptide repeat-containing protein
At5g24830-like [Fragaria vesca subsp. vesca]
Length = 589
Score = 119 bits (299), Expect = 3e-25
Identities = 61/143 (42%), Positives = 89/143 (62%)
Frame = +2
Query: 110 KQNRSKHNYDPPAVFNVLDTVVVHTMERLKKLRESITIVSRDNLYEGISNVMSFETDDCA 289
K+ + ++ DP A FNVLDT++ +ERLK +RESI++ L G ++ +++ +
Sbjct: 78 KKRNAGNDQDPQAEFNVLDTMLKDNLERLKTMRESISVAKIGFL--GCTSKINY-LEHMD 134
Query: 290 LIRTLCTEGKVLVAFWLHNALIMKRVAPDLHTYNFLINGLCKTGDLSNATWLLDAMKNMG 469
++R LC +GK+ AFWL L+ K + PD+ +N L+N LCK GDL A WL+ M MG
Sbjct: 135 VLRGLCVDGKLGSAFWLRRKLMNKGIIPDVWAHNCLLNALCKAGDLEKANWLIREMLEMG 194
Query: 470 VFPNHITYNTLIGGYCCWDSVDR 538
PN +TYNT I GYC D VD+
Sbjct: 195 PSPNCVTYNTFIKGYCLLDKVDK 217
Score = 56.2 bits (134), Expect = 5e-06
Identities = 26/76 (34%), Positives = 43/76 (56%)
Frame = +2
Query: 290 LIRTLCTEGKVLVAFWLHNALIMKRVAPDLHTYNFLINGLCKTGDLSNATWLLDAMKNMG 469
LI C ++ +A+ + + + + PD+ T N LI+GLCK +A ++ D M MG
Sbjct: 312 LIHGFCLNQQMDLAYGYLSEMTKRGLLPDVFTCNTLISGLCKERKFEDACYIHDIMPRMG 371
Query: 470 VFPNHITYNTLIGGYC 517
+ P+ +TYN +I G C
Sbjct: 372 IIPDKVTYNIIIQGLC 387
>gb|EOY29159.1| Tetratricopeptide repeat-like superfamily protein, putative isoform
1 [Theobroma cacao] gi|508781904|gb|EOY29160.1|
Tetratricopeptide repeat-like superfamily protein,
putative isoform 1 [Theobroma cacao]
gi|508781905|gb|EOY29161.1| Tetratricopeptide
repeat-like superfamily protein, putative isoform 1
[Theobroma cacao] gi|508781907|gb|EOY29163.1|
Tetratricopeptide repeat-like superfamily protein,
putative isoform 1 [Theobroma cacao]
Length = 699
Score = 117 bits (293), Expect = 2e-24
Identities = 57/134 (42%), Positives = 82/134 (61%)
Frame = +2
Query: 137 DPPAVFNVLDTVVVHTMERLKKLRESITIVSRDNLYEGISNVMSFETDDCALIRTLCTEG 316
DP AVFNVLD + ++ERLK +RE+I++ L + + + A+I+ LC E
Sbjct: 91 DPKAVFNVLDATLKESLERLKMMRENISLTK---LGLKVRTLKADNAGQIAMIKDLCLEQ 147
Query: 317 KVLVAFWLHNALIMKRVAPDLHTYNFLINGLCKTGDLSNATWLLDAMKNMGVFPNHITYN 496
K+ A WL +I K V PD+ T+N+L+NGLCK GD+ A WL+ M +G PNH+TYN
Sbjct: 148 KLEAALWLRREMIKKGVVPDVPTHNYLLNGLCKKGDMEKADWLIREMLEIGPPPNHVTYN 207
Query: 497 TLIGGYCCWDSVDR 538
T + G C + VD+
Sbjct: 208 TFVKGCCLSNDVDK 221
Score = 88.6 bits (218), Expect = 8e-16
Identities = 45/124 (36%), Positives = 69/124 (55%)
Frame = +2
Query: 167 TVVVHTMERLKKLRESITIVSRDNLYEGISNVMSFETDDCALIRTLCTEGKVLVAFWLHN 346
+++VH + + LR++ ++ + M E A+I+ LC +GK+ A L
Sbjct: 242 SMLVHKLCKRHLLRDATRLLGK----------MLREDHGEAIIQVLCLDGKLGSALMLRR 291
Query: 347 ALIMKRVAPDLHTYNFLINGLCKTGDLSNATWLLDAMKNMGVFPNHITYNTLIGGYCCWD 526
+I K + PD+ +N+L+NGLCK GD+ A WL M G PNH+TYNT I GYC D
Sbjct: 292 KMIQKGIIPDVLAHNYLLNGLCKIGDMKKADWLFREMIEKGPPPNHVTYNTFIKGYCLID 351
Query: 527 SVDR 538
+D+
Sbjct: 352 DMDK 355
>emb|CCW28838.1| putative glycosyl phosphatidyl inositol transamidase like protein
[Arachis ipaensis]
Length = 1542
Score = 117 bits (292), Expect = 2e-24
Identities = 63/160 (39%), Positives = 93/160 (58%)
Frame = +2
Query: 59 IDEPCRVSIKGCITKGGKQNRSKHNYDPPAVFNVLDTVVVHTMERLKKLRESITIVSRDN 238
I + C + + C + K R K P VFNVLD ++ ++ERLK +RE+I++ D
Sbjct: 827 IGKKCHLIAQDC-SSNEKSFRDKKG--PDVVFNVLDNILKDSLERLKMMRENISLAKID- 882
Query: 239 LYEGISNVMSFETDDCALIRTLCTEGKVLVAFWLHNALIMKRVAPDLHTYNFLINGLCKT 418
+G + V ++ T+ A IR+LC EGK+ A WL ++ K + PD+ T+N ++NGLC+T
Sbjct: 883 -LQGCTFVYNY-TEHAATIRSLCLEGKLGAAMWLRRKMVQKGLIPDVFTHNHIVNGLCRT 940
Query: 419 GDLSNATWLLDAMKNMGVFPNHITYNTLIGGYCCWDSVDR 538
G A W + M G PN TYNTLI YC +SVD+
Sbjct: 941 GLAEKADWFIREMLEFGPHPNSATYNTLIKAYCIVNSVDK 980
Score = 58.9 bits (141), Expect = 7e-07
Identities = 29/76 (38%), Positives = 40/76 (52%)
Frame = +2
Query: 290 LIRTLCTEGKVLVAFWLHNALIMKRVAPDLHTYNFLINGLCKTGDLSNATWLLDAMKNMG 469
LI C + +A+ +I K + PD TYN LI+ LCK G A ++L M MG
Sbjct: 1075 LINGFCKNQQTSLAYGYACEMIKKGLQPDGFTYNILIHALCKEGKTGEACYILGVMSKMG 1134
Query: 470 VFPNHITYNTLIGGYC 517
V P+ I+Y +I G C
Sbjct: 1135 VLPDQISYKIMIRGLC 1150
>emb|CCW28846.1| putative glycosyl phosphatidyl inositol transamidase like protein
[Arachis duranensis]
Length = 1428
Score = 116 bits (290), Expect = 4e-24
Identities = 64/160 (40%), Positives = 94/160 (58%)
Frame = +2
Query: 59 IDEPCRVSIKGCITKGGKQNRSKHNYDPPAVFNVLDTVVVHTMERLKKLRESITIVSRDN 238
I + C + + C + K R K P AVFNVLD ++ ++ERLK +RE+I++ D
Sbjct: 755 IGKKCHLIAQDC-SSNEKSFRDKKG--PDAVFNVLDNILKDSLERLKMMRENISLAKID- 810
Query: 239 LYEGISNVMSFETDDCALIRTLCTEGKVLVAFWLHNALIMKRVAPDLHTYNFLINGLCKT 418
+G + V ++ T+ A IR+LC EGK+ A WL ++ K + D+ T+N ++NGLC+T
Sbjct: 811 -LQGCTFVYNY-TEHAATIRSLCLEGKLGAAMWLRRKMVQKGLILDVFTHNHIVNGLCRT 868
Query: 419 GDLSNATWLLDAMKNMGVFPNHITYNTLIGGYCCWDSVDR 538
G A WL+ M G PN TYNTLI YC +SVD+
Sbjct: 869 GLAEEADWLIREMLEFGPHPNSATYNTLIKAYCIVNSVDK 908
Score = 58.9 bits (141), Expect = 7e-07
Identities = 29/76 (38%), Positives = 40/76 (52%)
Frame = +2
Query: 290 LIRTLCTEGKVLVAFWLHNALIMKRVAPDLHTYNFLINGLCKTGDLSNATWLLDAMKNMG 469
LI C + +A+ +I K + PD TYN LI+ LCK G A ++L M MG
Sbjct: 1003 LINGFCKNQQTSLAYGYACEMIKKGLQPDGFTYNILIHALCKEGKTGEACYILGVMSKMG 1062
Query: 470 VFPNHITYNTLIGGYC 517
V P+ I+Y +I G C
Sbjct: 1063 VMPDQISYKIMIRGLC 1078
>ref|XP_003635109.1| PREDICTED: pentatricopeptide repeat-containing protein
At5g24830-like [Vitis vinifera]
Length = 580
Score = 116 bits (290), Expect = 4e-24
Identities = 61/134 (45%), Positives = 84/134 (62%)
Frame = +2
Query: 137 DPPAVFNVLDTVVVHTMERLKKLRESITIVSRDNLYEGISNVMSFETDDCALIRTLCTEG 316
DP VFNVLD ++ ++ERLK +RES+++ G + M + T A+IR LC EG
Sbjct: 89 DPRVVFNVLDAILKDSLERLKMMRESVSLTKIG--LNGCTLEMDY-TGCVAMIRNLCLEG 145
Query: 317 KVLVAFWLHNALIMKRVAPDLHTYNFLINGLCKTGDLSNATWLLDAMKNMGVFPNHITYN 496
K+ A WL N +I K V PD+ T+N+L+NGLCK GDL A L+ M +G PN T+N
Sbjct: 146 KLRAALWLRNKMIQKGVIPDVLTHNYLVNGLCKAGDLEKADNLVREMLEIGPSPNCATFN 205
Query: 497 TLIGGYCCWDSVDR 538
T I GYC ++VD+
Sbjct: 206 TFIKGYCLNNNVDK 219
>ref|XP_004498596.1| PREDICTED: pentatricopeptide repeat-containing protein
At5g24830-like isoform X1 [Cicer arietinum]
gi|502124603|ref|XP_004498597.1| PREDICTED:
pentatricopeptide repeat-containing protein
At5g24830-like isoform X2 [Cicer arietinum]
Length = 600
Score = 112 bits (280), Expect = 5e-23
Identities = 63/160 (39%), Positives = 97/160 (60%)
Frame = +2
Query: 59 IDEPCRVSIKGCITKGGKQNRSKHNYDPPAVFNVLDTVVVHTMERLKKLRESITIVSRDN 238
I C+V+ + C + K + AVFNVLDT++ ++ERLK +RE+I++V R
Sbjct: 76 IGRKCQVNAQDCSLRNKSFGGGKGQH---AVFNVLDTMLKSSLERLKMMRENISLV-RIG 131
Query: 239 LYEGISNVMSFETDDCALIRTLCTEGKVLVAFWLHNALIMKRVAPDLHTYNFLINGLCKT 418
L +G S+ ++ ++ A IR LC EGK++ A WL L+ K + PD++T+N ++NGLCK
Sbjct: 132 L-QGYSHEYNY-AENAATIRFLCLEGKLVAALWLRRRLVQKCIIPDVYTHNHIVNGLCKL 189
Query: 419 GDLSNATWLLDAMKNMGVFPNHITYNTLIGGYCCWDSVDR 538
G + NA L+ M G P+ TYNTLI GYC + + +
Sbjct: 190 GLMGNADRLVREMLESGPRPSCATYNTLIKGYCAVNGIKK 229
Score = 59.7 bits (143), Expect = 4e-07
Identities = 28/76 (36%), Positives = 42/76 (55%)
Frame = +2
Query: 290 LIRTLCTEGKVLVAFWLHNALIMKRVAPDLHTYNFLINGLCKTGDLSNATWLLDAMKNMG 469
LI LC ++ +A ++ K + PD+ TYN LI LCK G +S A ++ M MG
Sbjct: 325 LINGLCQNQQMHLANGYACEMLKKGLLPDVFTYNILIGALCKEGKISEACYIFGVMSRMG 384
Query: 470 VFPNHITYNTLIGGYC 517
+ P+ I+Y +I G C
Sbjct: 385 IMPDQISYKIMIQGLC 400
>ref|XP_002527978.1| pentatricopeptide repeat-containing protein, putative [Ricinus
communis] gi|223532604|gb|EEF34390.1| pentatricopeptide
repeat-containing protein, putative [Ricinus communis]
Length = 621
Score = 111 bits (277), Expect = 1e-22
Identities = 60/134 (44%), Positives = 81/134 (60%)
Frame = +2
Query: 137 DPPAVFNVLDTVVVHTMERLKKLRESITIVSRDNLYEGISNVMSFETDDCALIRTLCTEG 316
DP VFNVLD ++ ++ERLK +RESI I S G S +S+ +L+R LC G
Sbjct: 81 DPQVVFNVLDAMLKGSLERLKSMRESIGISSVKVGLAGRSVDVSY-AGHASLVRDLCLAG 139
Query: 317 KVLVAFWLHNALIMKRVAPDLHTYNFLINGLCKTGDLSNATWLLDAMKNMGVFPNHITYN 496
K+ A WL L+ K PD+ T+NFL+NGLC +GDL A L+ M +G PN T+N
Sbjct: 140 KLGAALWLRRKLLHKGFVPDILTHNFLVNGLCNSGDLQKADCLIKEMLEIGPSPNCATFN 199
Query: 497 TLIGGYCCWDSVDR 538
T I GYC ++VD+
Sbjct: 200 TFIKGYCLLNNVDK 213
Score = 59.7 bits (143), Expect = 4e-07
Identities = 29/76 (38%), Positives = 43/76 (56%)
Frame = +2
Query: 290 LIRTLCTEGKVLVAFWLHNALIMKRVAPDLHTYNFLINGLCKTGDLSNATWLLDAMKNMG 469
LI C + +A+ ++ + + PD+ TYN LI+GLCK G L A ++ D M MG
Sbjct: 308 LIHGFCLTRNMKLAYSYSCDMLKRGLLPDIFTYNTLISGLCKAGKLYEACYIHDVMLRMG 367
Query: 470 VFPNHITYNTLIGGYC 517
V P+ I+Y +I G C
Sbjct: 368 VAPDQISYKIVIQGLC 383
Score = 58.9 bits (141), Expect = 7e-07
Identities = 29/72 (40%), Positives = 43/72 (59%)
Frame = +2
Query: 290 LIRTLCTEGKVLVAFWLHNALIMKRVAPDLHTYNFLINGLCKTGDLSNATWLLDAMKNMG 469
+I+ LCT G VL A + ++ K + P+ H +N +I+G + GD +NA + D M + G
Sbjct: 378 VIQGLCTRGDVLKANEHLHCMLEKSMVPEAHVWNLIIDGFARCGDSANAFSIRDQMLSFG 437
Query: 470 VFPNHITYNTLI 505
V PN TYN LI
Sbjct: 438 VVPNVFTYNALI 449
>ref|XP_003541593.1| PREDICTED: pentatricopeptide repeat-containing protein
At5g24830-like isoform X1 [Glycine max]
gi|571499056|ref|XP_006594389.1| PREDICTED:
pentatricopeptide repeat-containing protein
At5g24830-like isoform X2 [Glycine max]
gi|571499058|ref|XP_006594390.1| PREDICTED:
pentatricopeptide repeat-containing protein
At5g24830-like isoform X3 [Glycine max]
gi|571499060|ref|XP_006594391.1| PREDICTED:
pentatricopeptide repeat-containing protein
At5g24830-like isoform X4 [Glycine max]
Length = 577
Score = 107 bits (267), Expect = 2e-21
Identities = 61/164 (37%), Positives = 90/164 (54%)
Frame = +2
Query: 47 DERTIDEPCRVSIKGCITKGGKQNRSKHNYDPPAVFNVLDTVVVHTMERLKKLRESITIV 226
D+ ++ C ++ C++ G R AVFN LDT++ ++ERLK +RE++ +V
Sbjct: 53 DDSATEKKCELNAGDCLSNDGGNGRH-------AVFNALDTMLKDSLERLKMMRENLCLV 105
Query: 227 SRDNLYEGISNVMSFETDDCALIRTLCTEGKVLVAFWLHNALIMKRVAPDLHTYNFLING 406
+ L G + + +D A IR LC +GK+ A WL + K V D+ T+N ++NG
Sbjct: 106 -KTGLTIGYACESKY-AEDTATIRRLCLDGKLGAAVWLWGKMAQKGVVSDVFTHNHIVNG 163
Query: 407 LCKTGDLSNATWLLDAMKNMGVFPNHITYNTLIGGYCCWDSVDR 538
LCK G L A ++ M G PN TYNTLI GYC + VDR
Sbjct: 164 LCKIGLLDKADLVVREMLEFGPRPNCATYNTLIKGYCAVNGVDR 207
Score = 60.8 bits (146), Expect = 2e-07
Identities = 28/76 (36%), Positives = 41/76 (53%)
Frame = +2
Query: 290 LIRTLCTEGKVLVAFWLHNALIMKRVAPDLHTYNFLINGLCKTGDLSNATWLLDAMKNMG 469
LI C ++ +A+ + K + PD TYN +I LCK G +S A + + M NMG
Sbjct: 303 LINGFCKSQQMNLAYGYACEMFKKGLLPDAFTYNIIIGALCKEGKISEACYTVGVMSNMG 362
Query: 470 VFPNHITYNTLIGGYC 517
+ P+ ITY +I G C
Sbjct: 363 IMPDQITYQIVIRGLC 378
>gb|ESW05757.1| hypothetical protein PHAVU_011G207000g [Phaseolus vulgaris]
gi|561006764|gb|ESW05758.1| hypothetical protein
PHAVU_011G207000g [Phaseolus vulgaris]
Length = 582
Score = 106 bits (265), Expect = 3e-21
Identities = 60/168 (35%), Positives = 93/168 (55%), Gaps = 3/168 (1%)
Frame = +2
Query: 44 DDERTIDEPCRVSIKGCITKG---GKQNRSKHNYDPPAVFNVLDTVVVHTMERLKKLRES 214
D + I++ C V C + G +H AVFN LDT++ ++ERLK +RE+
Sbjct: 51 DVDAAIEKQCEVYSGDCSSNDRSFGADENGRH-----AVFNALDTMLKDSLERLKTMREN 105
Query: 215 ITIVSRDNLYEGISNVMSFETDDCALIRTLCTEGKVLVAFWLHNALIMKRVAPDLHTYNF 394
+ +V + L G + + + A IR+LC + K+ A WL +++K V PD+ T+N
Sbjct: 106 LCLV-KIGLTMGYACEFKY-AEHTATIRSLCLDSKLEAALWLWRKMVLKGVVPDVFTHNH 163
Query: 395 LINGLCKTGDLSNATWLLDAMKNMGVFPNHITYNTLIGGYCCWDSVDR 538
++NGLCK G L A W++ M G PN TYN+LI GYC + +D+
Sbjct: 164 IVNGLCKIGFLEKADWVVREMLAFGPRPNCATYNSLIKGYCTVNDMDK 211
Score = 61.2 bits (147), Expect = 1e-07
Identities = 29/76 (38%), Positives = 42/76 (55%)
Frame = +2
Query: 290 LIRTLCTEGKVLVAFWLHNALIMKRVAPDLHTYNFLINGLCKTGDLSNATWLLDAMKNMG 469
LI C ++ +A+ + K + PD+ TYN LI LCK G +S A + L M +MG
Sbjct: 307 LIHGFCKSLQMTLAYGYACEMFKKGLLPDVFTYNILIGALCKEGKISEACYTLGVMYSMG 366
Query: 470 VFPNHITYNTLIGGYC 517
+ P+ ITY +I G C
Sbjct: 367 IMPDQITYQVVIRGLC 382
>gb|EXB60441.1| hypothetical protein L484_014894 [Morus notabilis]
Length = 591
Score = 105 bits (262), Expect = 7e-21
Identities = 57/144 (39%), Positives = 84/144 (58%), Gaps = 1/144 (0%)
Frame = +2
Query: 110 KQNRSKHNYDPPAVFNVLDTVVVHTMERLKKLRESITIVSRDNL-YEGISNVMSFETDDC 286
K+N DP AVFNVLD+++ +++ LK +RESIT +L + +N + T
Sbjct: 86 KKNDVNGEQDPQAVFNVLDSMLKESLDHLKTMRESITWPKMASLGWTRDANYQEYGT--- 142
Query: 287 ALIRTLCTEGKVLVAFWLHNALIMKRVAPDLHTYNFLINGLCKTGDLSNATWLLDAMKNM 466
+IR LC +GK+ A WL ++ K V D+ T+N+L+NGLCK GDL A L+ M
Sbjct: 143 -IIRDLCVDGKLGTALWLRRKMMRKGVILDIFTHNYLVNGLCKIGDLERADGLIKEMLQF 201
Query: 467 GVFPNHITYNTLIGGYCCWDSVDR 538
G P+ T+NT I GYC + +D+
Sbjct: 202 GPSPSCATFNTFIKGYCLINDLDK 225
Score = 55.8 bits (133), Expect = 6e-06
Identities = 28/76 (36%), Positives = 41/76 (53%)
Frame = +2
Query: 290 LIRTLCTEGKVLVAFWLHNALIMKRVAPDLHTYNFLINGLCKTGDLSNATWLLDAMKNMG 469
LI LC ++ A+ +I + + PD+ TYN LI+ LCK G A+ + D M G
Sbjct: 321 LINGLCLSREMNAAYGYFAEMIKRGLTPDVFTYNALISCLCKEGKSEEASHVHDVMSRTG 380
Query: 470 VFPNHITYNTLIGGYC 517
V P+ I+Y +I G C
Sbjct: 381 VVPDQISYKLIIQGLC 396
>dbj|BAC41999.1| unknown protein [Arabidopsis thaliana]
Length = 593
Score = 105 bits (261), Expect = 9e-21
Identities = 56/139 (40%), Positives = 80/139 (57%), Gaps = 5/139 (3%)
Frame = +2
Query: 137 DPPAVFNVLDTVVVHTMERLKKLRESITIVSRDNLYEGISNVMSFETDDC-----ALIRT 301
DP A+FNVLD ++ +++RL LRES+ SF+ DDC +++R
Sbjct: 83 DPEAIFNVLDYILKSSLDRLASLRESVC------------QAKSFDYDDCLSIHSSIMRD 130
Query: 302 LCTEGKVLVAFWLHNALIMKRVAPDLHTYNFLINGLCKTGDLSNATWLLDAMKNMGVFPN 481
LC +GK+ A WL +I V P L T+N L+NGLCK G + A L+ M+ MG PN
Sbjct: 131 LCLQGKLDAALWLRKKMIYSGVIPGLITHNHLLNGLCKAGYIEKADGLVREMREMGPSPN 190
Query: 482 HITYNTLIGGYCCWDSVDR 538
++YNTLI G C ++VD+
Sbjct: 191 CVSYNTLIKGLCSVNNVDK 209
Score = 64.3 bits (155), Expect = 2e-08
Identities = 32/83 (38%), Positives = 47/83 (56%)
Frame = +2
Query: 290 LIRTLCTEGKVLVAFWLHNALIMKRVAPDLHTYNFLINGLCKTGDLSNATWLLDAMKNMG 469
+IR LC+ G ++ A+ ++ + V PD+ TYN LI+ LCK G A L M+N G
Sbjct: 306 IIRGLCSSGNMVAAYGFMCDMVKRGVNPDVFTYNTLISALCKEGKFDEACDLHGTMQNGG 365
Query: 470 VFPNHITYNTLIGGYCCWDSVDR 538
V P+ I+Y +I G C V+R
Sbjct: 366 VAPDQISYKVIIQGLCIHGDVNR 388
>ref|NP_568460.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
gi|75154065|sp|Q8L6Y3.1|PP396_ARATH RecName:
Full=Pentatricopeptide repeat-containing protein
At5g24830 gi|22655280|gb|AAM98230.1| putative protein
[Arabidopsis thaliana] gi|30725398|gb|AAP37721.1|
At5g24830 [Arabidopsis thaliana]
gi|332005984|gb|AED93367.1| pentatricopeptide
repeat-containing protein [Arabidopsis thaliana]
Length = 593
Score = 105 bits (261), Expect = 9e-21
Identities = 56/139 (40%), Positives = 80/139 (57%), Gaps = 5/139 (3%)
Frame = +2
Query: 137 DPPAVFNVLDTVVVHTMERLKKLRESITIVSRDNLYEGISNVMSFETDDC-----ALIRT 301
DP A+FNVLD ++ +++RL LRES+ SF+ DDC +++R
Sbjct: 83 DPEAIFNVLDYILKSSLDRLASLRESVC------------QTKSFDYDDCLSIHSSIMRD 130
Query: 302 LCTEGKVLVAFWLHNALIMKRVAPDLHTYNFLINGLCKTGDLSNATWLLDAMKNMGVFPN 481
LC +GK+ A WL +I V P L T+N L+NGLCK G + A L+ M+ MG PN
Sbjct: 131 LCLQGKLDAALWLRKKMIYSGVIPGLITHNHLLNGLCKAGYIEKADGLVREMREMGPSPN 190
Query: 482 HITYNTLIGGYCCWDSVDR 538
++YNTLI G C ++VD+
Sbjct: 191 CVSYNTLIKGLCSVNNVDK 209
Score = 64.3 bits (155), Expect = 2e-08
Identities = 32/83 (38%), Positives = 47/83 (56%)
Frame = +2
Query: 290 LIRTLCTEGKVLVAFWLHNALIMKRVAPDLHTYNFLINGLCKTGDLSNATWLLDAMKNMG 469
+IR LC+ G ++ A+ ++ + V PD+ TYN LI+ LCK G A L M+N G
Sbjct: 306 IIRGLCSSGNMVAAYGFMCDMVKRGVNPDVFTYNTLISALCKEGKFDEACDLHGTMQNGG 365
Query: 470 VFPNHITYNTLIGGYCCWDSVDR 538
V P+ I+Y +I G C V+R
Sbjct: 366 VAPDQISYKVIIQGLCIHGDVNR 388
>ref|XP_006371854.1| pentatricopeptide repeat-containing family protein [Populus
trichocarpa] gi|550318031|gb|ERP49651.1|
pentatricopeptide repeat-containing family protein
[Populus trichocarpa]
Length = 532
Score = 103 bits (258), Expect = 2e-20
Identities = 53/132 (40%), Positives = 83/132 (62%)
Frame = +2
Query: 143 PAVFNVLDTVVVHTMERLKKLRESITIVSRDNLYEGISNVMSFETDDCALIRTLCTEGKV 322
P VFNVLD+++ +++RLK +R+ I++V + G + ++ ++ A+I+ LC GK+
Sbjct: 22 PLVFNVLDSMLKGSLDRLKSMRDDISLVKKG--ITGCALDVNCAGNE-AIIKDLCLGGKL 78
Query: 323 LVAFWLHNALIMKRVAPDLHTYNFLINGLCKTGDLSNATWLLDAMKNMGVFPNHITYNTL 502
A WL + +I K PD+ T+N+++NGLCK +L A WL+ M + G PN TYNT
Sbjct: 79 GPALWLRSKMIQKGFVPDVLTHNYMVNGLCKMIELEKADWLIREMLDKGPSPNCATYNTF 138
Query: 503 IGGYCCWDSVDR 538
I GYC D VD+
Sbjct: 139 IKGYCLLDKVDK 150
Score = 59.7 bits (143), Expect = 4e-07
Identities = 28/83 (33%), Positives = 45/83 (54%)
Frame = +2
Query: 290 LIRTLCTEGKVLVAFWLHNALIMKRVAPDLHTYNFLINGLCKTGDLSNATWLLDAMKNMG 469
LI C + +A+ ++ + PD+ TYN L++ LCK+G L A ++ D M MG
Sbjct: 245 LIHGFCLARDMKLAYSYSCQMLKMGLLPDVFTYNTLVSSLCKSGKLDEACYIHDVMLRMG 304
Query: 470 VFPNHITYNTLIGGYCCWDSVDR 538
V P+ ++Y +I G C VD+
Sbjct: 305 VAPDEVSYKLIIQGLCVCGDVDK 327
Score = 58.2 bits (139), Expect = 1e-06
Identities = 26/75 (34%), Positives = 42/75 (56%)
Frame = +2
Query: 290 LIRTLCTEGKVLVAFWLHNALIMKRVAPDLHTYNFLINGLCKTGDLSNATWLLDAMKNMG 469
L+ +LC GK+ A ++H+ ++ VAPD +Y +I GLC GD+ A L+ M
Sbjct: 280 LVSSLCKSGKLDEACYIHDVMLRMGVAPDEVSYKLIIQGLCVCGDVDKANGYLNCMLEKS 339
Query: 470 VFPNHITYNTLIGGY 514
+ P + +N +I GY
Sbjct: 340 MIPEPLVWNLIIDGY 354
Score = 56.2 bits (134), Expect = 5e-06
Identities = 32/89 (35%), Positives = 45/89 (50%)
Frame = +2
Query: 251 ISNVMSFETDDCALIRTLCTEGKVLVAFWLHNALIMKRVAPDLHTYNFLINGLCKTGDLS 430
+ NV ++ ALI G +L A++L +++K + PD+ TYN LI G +
Sbjct: 376 VPNVFTYN----ALIHAQVKIGNILYAYFLKKDMLLKGLFPDVVTYNLLIGAAAHAGHIH 431
Query: 431 NATWLLDAMKNMGVFPNHITYNTLIGGYC 517
A L D M G P+ ITY LI GYC
Sbjct: 432 YALQLYDEMLRGGCNPDMITYTELIRGYC 460
>ref|XP_006598110.1| PREDICTED: pentatricopeptide repeat-containing protein
At5g24830-like, partial [Glycine max]
Length = 327
Score = 103 bits (256), Expect = 3e-20
Identities = 59/159 (37%), Positives = 88/159 (55%), Gaps = 3/159 (1%)
Frame = +2
Query: 71 CRVSIKGCITKG---GKQNRSKHNYDPPAVFNVLDTVVVHTMERLKKLRESITIVSRDNL 241
C V+ + C++ G +H AVFN LDT++ ++ERLK + E++ +V + L
Sbjct: 31 CGVNAEDCLSNDDSFGADGNGRH-----AVFNALDTLLKDSLERLKMMSENLCLV-KTGL 84
Query: 242 YEGISNVMSFETDDCALIRTLCTEGKVLVAFWLHNALIMKRVAPDLHTYNFLINGLCKTG 421
G + + +D A IR LC +GK+ A WL ++ K V PD+ T++ ++NGLCK G
Sbjct: 85 TIGYACESKY-AEDTATIRRLCLDGKLEAAVWLQGKMVQKGVVPDVFTHSHIVNGLCKIG 143
Query: 422 DLSNATWLLDAMKNMGVFPNHITYNTLIGGYCCWDSVDR 538
A ++ M G PN TYNTLI GYC + VDR
Sbjct: 144 LPDKADLVVREMLEFGPCPNCATYNTLIKGYCAVNGVDR 182
>ref|XP_006287361.1| hypothetical protein CARUB_v10000559mg [Capsella rubella]
gi|482556067|gb|EOA20259.1| hypothetical protein
CARUB_v10000559mg [Capsella rubella]
Length = 582
Score = 102 bits (255), Expect = 4e-20
Identities = 54/139 (38%), Positives = 81/139 (58%), Gaps = 5/139 (3%)
Frame = +2
Query: 137 DPPAVFNVLDTVVVHTMERLKKLRESITIVSRDNLYEGISNVMSFETDDC-----ALIRT 301
DP A+FNVLD+++ +++RL LRES+ +F+ DD +++R
Sbjct: 83 DPEAIFNVLDSILKSSLDRLASLRESVC------------RTKNFDYDDSLSIHSSIMRD 130
Query: 302 LCTEGKVLVAFWLHNALIMKRVAPDLHTYNFLINGLCKTGDLSNATWLLDAMKNMGVFPN 481
LC +GK+ A WL +I+ P L T+N LINGLCK G + A L+ M++MG PN
Sbjct: 131 LCLQGKLDAALWLRRKMILSGFIPGLFTHNHLINGLCKLGHIEKADGLVREMRDMGPSPN 190
Query: 482 HITYNTLIGGYCCWDSVDR 538
++YNTLI G C ++VD+
Sbjct: 191 CVSYNTLIKGLCSVNNVDK 209
Score = 62.4 bits (150), Expect = 6e-08
Identities = 32/83 (38%), Positives = 45/83 (54%)
Frame = +2
Query: 290 LIRTLCTEGKVLVAFWLHNALIMKRVAPDLHTYNFLINGLCKTGDLSNATWLLDAMKNMG 469
+IR LC G ++ A+ ++ + PDL TYN LI+ LCK G A L M N+G
Sbjct: 306 IIRGLCLSGNMVAAYGFMCDMVKRGENPDLFTYNTLISALCKEGKFDEACDLHATMLNVG 365
Query: 470 VFPNHITYNTLIGGYCCWDSVDR 538
V P+ I+Y +I G C V+R
Sbjct: 366 VAPDQISYKVIIQGLCIKGDVER 388
>ref|XP_002332091.1| predicted protein [Populus trichocarpa]
Length = 521
Score = 97.8 bits (242), Expect = 1e-18
Identities = 51/132 (38%), Positives = 77/132 (58%)
Frame = +2
Query: 143 PAVFNVLDTVVVHTMERLKKLRESITIVSRDNLYEGISNVMSFETDDCALIRTLCTEGKV 322
P VFNVLD+++ +++RLK +R G + ++ ++ A+I+ LC GK+
Sbjct: 22 PLVFNVLDSMLKGSLDRLKSMRLQFVSFLYGKGITGCALDVNCAGNE-AIIKDLCLGGKL 80
Query: 323 LVAFWLHNALIMKRVAPDLHTYNFLINGLCKTGDLSNATWLLDAMKNMGVFPNHITYNTL 502
A WL + +I K PD+ T+N+++NGLCK +L A WL+ M + G PN TYNT
Sbjct: 81 GPALWLRSKMIQKGFVPDVLTHNYMVNGLCKMIELEKADWLIREMLDKGPSPNCATYNTF 140
Query: 503 IGGYCCWDSVDR 538
I GYC D VD+
Sbjct: 141 IKGYCLLDKVDK 152
Score = 56.6 bits (135), Expect = 4e-06
Identities = 24/56 (42%), Positives = 35/56 (62%)
Frame = +2
Query: 371 PDLHTYNFLINGLCKTGDLSNATWLLDAMKNMGVFPNHITYNTLIGGYCCWDSVDR 538
PD+ TYN L++ LCK+G L A ++ D M MGV P+ ++Y +I G C VD+
Sbjct: 261 PDVFTYNTLVSSLCKSGKLDEACYMHDVMLRMGVAPDEVSYKLIIQGLCVCGDVDK 316
Score = 56.2 bits (134), Expect = 5e-06
Identities = 32/89 (35%), Positives = 45/89 (50%)
Frame = +2
Query: 251 ISNVMSFETDDCALIRTLCTEGKVLVAFWLHNALIMKRVAPDLHTYNFLINGLCKTGDLS 430
+ NV ++ ALI G +L A++L +++K + PD+ TYN LI G +
Sbjct: 365 VPNVFTYN----ALIHAQVKIGNILYAYFLKKDMLLKGLFPDVVTYNLLIGAAAHAGHIH 420
Query: 431 NATWLLDAMKNMGVFPNHITYNTLIGGYC 517
A L D M G P+ ITY LI GYC
Sbjct: 421 YALQLYDEMLRGGCNPDMITYTELIRGYC 449
Score = 55.8 bits (133), Expect = 6e-06
Identities = 25/75 (33%), Positives = 41/75 (54%)
Frame = +2
Query: 290 LIRTLCTEGKVLVAFWLHNALIMKRVAPDLHTYNFLINGLCKTGDLSNATWLLDAMKNMG 469
L+ +LC GK+ A ++H+ ++ VAPD +Y +I GLC GD+ A L+
Sbjct: 269 LVSSLCKSGKLDEACYMHDVMLRMGVAPDEVSYKLIIQGLCVCGDVDKANGYLNCTLEKS 328
Query: 470 VFPNHITYNTLIGGY 514
+ P + +N +I GY
Sbjct: 329 MIPEPLVWNLIIDGY 343
>ref|XP_002872129.1| predicted protein [Arabidopsis lyrata subsp. lyrata]
gi|297317966|gb|EFH48388.1| predicted protein
[Arabidopsis lyrata subsp. lyrata]
Length = 588
Score = 97.1 bits (240), Expect = 2e-18
Identities = 62/185 (33%), Positives = 92/185 (49%), Gaps = 7/185 (3%)
Frame = +2
Query: 5 RGFEQSLSVVESQDDERTIDEPCRVSIKGC--ITKGGKQNRSKHNYDPPAVFNVLDTVVV 178
R FE LS +E P +S K T+ ++ DP A+FNVLD ++
Sbjct: 44 RDFEMRLSCIE---------RPSSISGKHSHLCTEKWFSDQKDQKRDPEAIFNVLDYILK 94
Query: 179 HTMERLKKLRESITIVSRDNLYEGISNVMSFETDDC-----ALIRTLCTEGKVLVAFWLH 343
+++RL LRES+ +FE DD +++R LC +GK+ A WL
Sbjct: 95 SSLDRLASLRESVC------------QTKNFEYDDSLSIHSSIMRDLCLQGKMDAALWLR 142
Query: 344 NALIMKRVAPDLHTYNFLINGLCKTGDLSNATWLLDAMKNMGVFPNHITYNTLIGGYCCW 523
++ P L +N L+NGLCK G + A L+ M+ MG PN ++YNTLI G C
Sbjct: 143 EKMLRSGFIPGLIMHNHLLNGLCKLGYIEKADGLVREMREMGPSPNCVSYNTLIKGLCSV 202
Query: 524 DSVDR 538
++VD+
Sbjct: 203 NNVDK 207
Score = 67.0 bits (162), Expect = 3e-09
Identities = 33/83 (39%), Positives = 48/83 (57%)
Frame = +2
Query: 290 LIRTLCTEGKVLVAFWLHNALIMKRVAPDLHTYNFLINGLCKTGDLSNATWLLDAMKNMG 469
+IR LC+ G ++ A+ ++ + V PD+ TYN LI+ LCK G A L M+N+G
Sbjct: 304 IIRGLCSSGNMVAAYGFMCDMVKRGVNPDVFTYNTLISALCKAGKFDVACDLHGTMQNVG 363
Query: 470 VFPNHITYNTLIGGYCCWDSVDR 538
V P+ I+Y +I G C VDR
Sbjct: 364 VAPDQISYKVIIQGLCIQGDVDR 386
>gb|EMJ26174.1| hypothetical protein PRUPE_ppa020759mg, partial [Prunus persica]
Length = 444
Score = 96.7 bits (239), Expect = 3e-18
Identities = 44/84 (52%), Positives = 56/84 (66%)
Frame = +2
Query: 287 ALIRTLCTEGKVLVAFWLHNALIMKRVAPDLHTYNFLINGLCKTGDLSNATWLLDAMKNM 466
A+I+ LC +GK+ AFWL LI K + PD+ T+N+L+NGLCKTGDL A WL+ M
Sbjct: 2 AIIKVLCIDGKLGTAFWLRRKLIKKGIVPDVLTHNYLLNGLCKTGDLEKADWLIREMLEN 61
Query: 467 GVFPNHITYNTLIGGYCCWDSVDR 538
G PN TYNT I GYC + VD+
Sbjct: 62 GPSPNCATYNTFIKGYCRLNEVDK 85
Score = 55.8 bits (133), Expect = 6e-06
Identities = 28/83 (33%), Positives = 43/83 (51%)
Frame = +2
Query: 290 LIRTLCTEGKVLVAFWLHNALIMKRVAPDLHTYNFLINGLCKTGDLSNATWLLDAMKNMG 469
LI C + +A+ +I + + P + T+N +++GLCK G L A ++ M MG
Sbjct: 181 LIHGFCLSQHMDLAYGYLCEMIKRGILPSVFTFNIILSGLCKGGKLEEACYVHGLMSRMG 240
Query: 470 VFPNHITYNTLIGGYCCWDSVDR 538
V PN I+Y L+ G C V R
Sbjct: 241 VTPNQISYKILVRGLCSKGDVVR 263
>ref|XP_006394734.1| hypothetical protein EUTSA_v10003880mg [Eutrema salsugineum]
gi|557091373|gb|ESQ32020.1| hypothetical protein
EUTSA_v10003880mg [Eutrema salsugineum]
Length = 590
Score = 94.0 bits (232), Expect = 2e-17
Identities = 54/134 (40%), Positives = 74/134 (55%)
Frame = +2
Query: 137 DPPAVFNVLDTVVVHTMERLKKLRESITIVSRDNLYEGISNVMSFETDDCALIRTLCTEG 316
DP A+FNVLD+++ +++RL LRES+ E IS S ++R LC +G
Sbjct: 83 DPEAIFNVLDSILKSSLDRLASLRESVCRRKSFRYDETISMHTS-------IMRDLCLQG 135
Query: 317 KVLVAFWLHNALIMKRVAPDLHTYNFLINGLCKTGDLSNATWLLDAMKNMGVFPNHITYN 496
K+ A WL LI P L T+N L+NGLCK G++ A L+ M G PN I+YN
Sbjct: 136 KLDAALWLRKKLIHGGFIPGLITHNHLLNGLCKLGNIEKADGLIREMWETGPSPNCISYN 195
Query: 497 TLIGGYCCWDSVDR 538
T I G C + VD+
Sbjct: 196 TFIKGLCSVNKVDK 209
Score = 58.9 bits (141), Expect = 7e-07
Identities = 29/83 (34%), Positives = 44/83 (53%)
Frame = +2
Query: 290 LIRTLCTEGKVLVAFWLHNALIMKRVAPDLHTYNFLINGLCKTGDLSNATWLLDAMKNMG 469
+IR LC+ K++ A+ ++ + V PD+ YN LI+ LCK G A + M+ G
Sbjct: 303 IIRGLCSSKKIVAAYGFMCDMVKRGVTPDVFAYNTLISALCKEGKFDEACDIHGQMQRCG 362
Query: 470 VFPNHITYNTLIGGYCCWDSVDR 538
V P+ I+Y +I G C V R
Sbjct: 363 VAPDQISYKVIIQGLCIHGDVAR 385
>ref|XP_006450123.1| hypothetical protein CICLE_v10007859mg [Citrus clementina]
gi|567916236|ref|XP_006450124.1| hypothetical protein
CICLE_v10007859mg [Citrus clementina]
gi|568860194|ref|XP_006483611.1| PREDICTED:
pentatricopeptide repeat-containing protein
At5g24830-like isoform X1 [Citrus sinensis]
gi|557553349|gb|ESR63363.1| hypothetical protein
CICLE_v10007859mg [Citrus clementina]
gi|557553350|gb|ESR63364.1| hypothetical protein
CICLE_v10007859mg [Citrus clementina]
Length = 572
Score = 92.8 bits (229), Expect = 4e-17
Identities = 52/142 (36%), Positives = 75/142 (52%), Gaps = 3/142 (2%)
Frame = +2
Query: 122 SKHNYDPPAVFNVLDTVVVHTMERLKKLRESITIVSRDNLYEGISNVMSFETD---DCAL 292
S + +P AVFN LD ++ ++RLK +R++ + + ETD A+
Sbjct: 77 SDNEGNPQAVFNALDLILKENLDRLKTMRDTGPVRC------------TLETDYRRHVAV 124
Query: 293 IRTLCTEGKVLVAFWLHNALIMKRVAPDLHTYNFLINGLCKTGDLSNATWLLDAMKNMGV 472
IR LC GK+ A WL +I K PD+ T+N+L+N LCK GDL A ++ M M
Sbjct: 125 IRDLCLGGKIGTALWLRRKMIQKGTVPDVLTHNYLVNELCKIGDLEKADHVIREMSEMRP 184
Query: 473 FPNHITYNTLIGGYCCWDSVDR 538
PN TYN I GYC + +D+
Sbjct: 185 SPNCATYNAFITGYCRVNELDK 206
Score = 57.4 bits (137), Expect = 2e-06
Identities = 33/88 (37%), Positives = 44/88 (50%)
Frame = +2
Query: 254 SNVMSFETDDCALIRTLCTEGKVLVAFWLHNALIMKRVAPDLHTYNFLINGLCKTGDLSN 433
SNV +F ALI G + AF L +++ + PD+ TYN LI C G +
Sbjct: 434 SNVFTFN----ALILAETRGGSIFDAFSLKKEMLLDGIFPDVFTYNLLIGASCNLGHIHL 489
Query: 434 ATWLLDAMKNMGVFPNHITYNTLIGGYC 517
A L D M G+ P+ ITY LI G+C
Sbjct: 490 ALQLYDEMLRRGITPDIITYTELIKGHC 517
Score = 56.6 bits (135), Expect = 4e-06
Identities = 28/76 (36%), Positives = 39/76 (51%)
Frame = +2
Query: 290 LIRTLCTEGKVLVAFWLHNALIMKRVAPDLHTYNFLINGLCKTGDLSNATWLLDAMKNMG 469
LI C G + AF ++ + PD+ TYN L+N LCK G L A+ + G
Sbjct: 302 LINGFCLNGDISSAFAYFCQMLKRGFLPDVITYNTLLNCLCKQGKLDEASHFYGVLSKTG 361
Query: 470 VFPNHITYNTLIGGYC 517
V P+ I+Y T+I G C
Sbjct: 362 VAPDQISYKTIIQGLC 377