BLASTX nr result
ID: Zingiber23_contig00047611
seq
BLASTX 2.2.25 [Feb-01-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= Zingiber23_contig00047611
(327 letters)
Database: ./nr
37,332,560 sequences; 13,225,080,153 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
emb|CAN65627.1| hypothetical protein VITISV_032735 [Vitis vinifera] 125 6e-27
emb|CAN64055.1| hypothetical protein VITISV_044406 [Vitis vinifera] 123 2e-26
gb|ADJ18449.1| gag/pol protein [Bryonia dioica] 120 2e-25
emb|CAN69397.1| hypothetical protein VITISV_021035 [Vitis vinifera] 114 1e-23
emb|CAN67199.1| hypothetical protein VITISV_017217 [Vitis vinifera] 113 2e-23
gb|ABF97047.1| retrotransposon protein, putative, Ty1-copia subc... 110 4e-23
gb|AAP44605.1| putative polyprotein [Oryza sativa Japonica Group] 110 4e-23
gb|ABA97705.1| retrotransposon protein, putative, Ty1-copia subc... 111 9e-23
dbj|BAA22288.1| polyprotein [Oryza australiensis] 110 2e-22
gb|AAC26250.1| contains similarity to reverse transcriptase (Pfa... 110 3e-22
gb|ABF97213.1| retrotransposon protein, putative, Ty1-copia subc... 110 3e-22
gb|AAS01945.1| putative polyprotein [Oryza sativa Japonica Group] 110 3e-22
gb|AAM74249.1|AC074355_11 Putative retroelement [Oryza sativa Ja... 109 4e-22
gb|AAP52343.2| retrotransposon protein, putative, Ty1-copia subc... 109 4e-22
emb|CAE04463.2| OSJNBa0029L02.4 [Oryza sativa Japonica Group] 108 6e-22
gb|ADB85429.1| putative retrotransposon protein [Phyllostachys e... 107 1e-21
emb|CAE04999.2| OSJNBb0093G06.7 [Oryza sativa Japonica Group] 107 1e-21
ref|XP_004978922.1| PREDICTED: uncharacterized protein LOC101776... 106 3e-21
gb|ABF97393.1| retrotransposon protein, putative, Ty1-copia subc... 106 3e-21
gb|AAR06328.1| putative polyprotein [Oryza sativa Japonica Group] 106 3e-21
>emb|CAN65627.1| hypothetical protein VITISV_032735 [Vitis vinifera]
Length = 1285
Score = 125 bits (314), Expect = 6e-27
Identities = 68/101 (67%), Positives = 80/101 (79%), Gaps = 3/101 (2%)
Frame = +2
Query: 2 FSPVAMLKSIRILLSIAAHMDYEIWQMDVKTAFLNGSLEENIHMKQPEGFIAKG*EHLVC 181
FSPVAMLKSIRILLSIAA+ DYEIWQMDVKTAFLNGSL+E I+MKQ EGFI G EHL+C
Sbjct: 872 FSPVAMLKSIRILLSIAAYFDYEIWQMDVKTAFLNGSLDECIYMKQLEGFITNGQEHLLC 931
Query: 182 KLNQSM-D*GKASRSWNIRFIKVIQIYGFS--NRISLVYTK 295
KLN+S+ +ASRSWN F + I+ +GF + +S VY K
Sbjct: 932 KLNRSIYGLKQASRSWNTCFDQTIKTFGFDQCHDVSCVYKK 972
>emb|CAN64055.1| hypothetical protein VITISV_044406 [Vitis vinifera]
Length = 633
Score = 123 bits (309), Expect = 2e-26
Identities = 68/101 (67%), Positives = 79/101 (78%), Gaps = 3/101 (2%)
Frame = +2
Query: 2 FSPVAMLKSIRILLSIAAHMDYEIWQMDVKTAFLNGSLEENIHMKQPEGFIAKG*EHLVC 181
FSPVAMLKSIRILLSIAA+ DYEIWQMDVKTAFLNGSL+E I+MKQ EGFI G EHL+C
Sbjct: 194 FSPVAMLKSIRILLSIAAYFDYEIWQMDVKTAFLNGSLDECIYMKQXEGFIXNGQEHLLC 253
Query: 182 KLNQSM-D*GKASRSWNIRFIKVIQIYGFS--NRISLVYTK 295
KLN+S+ +ASRSWN F + I+ +GF + S VY K
Sbjct: 254 KLNRSIYGLKQASRSWNTCFDQTIKTFGFDQCHDESCVYKK 294
>gb|ADJ18449.1| gag/pol protein [Bryonia dioica]
Length = 1292
Score = 120 bits (300), Expect = 2e-25
Identities = 66/101 (65%), Positives = 76/101 (75%), Gaps = 3/101 (2%)
Frame = +2
Query: 2 FSPVAMLKSIRILLSIAAHMDYEIWQMDVKTAFLNGSLEENIHMKQPEGFIAKG*EHLVC 181
FSPVAMLKSIRILLSIA +YEIWQMDVKTAFLNG+LEE+I+M QPEGFIA+ E VC
Sbjct: 889 FSPVAMLKSIRILLSIATFYNYEIWQMDVKTAFLNGNLEESIYMVQPEGFIAQDQEQKVC 948
Query: 182 KLNQSM-D*GKASRSWNIRFIKVIQIYGFSNRIS--LVYTK 295
KL +S+ +ASRSWNIRF I+ YGF + VY K
Sbjct: 949 KLQKSIYGLKQASRSWNIRFDTAIKSYGFEQNVDEPCVYKK 989
>emb|CAN69397.1| hypothetical protein VITISV_021035 [Vitis vinifera]
Length = 668
Score = 114 bits (285), Expect = 1e-23
Identities = 60/93 (64%), Positives = 69/93 (74%), Gaps = 1/93 (1%)
Frame = +2
Query: 2 FSPVAMLKSIRILLSIAAHMDYEIWQMDVKTAFLNGSLEENIHMKQPEGFIAKG*EHLVC 181
FSPV MLKSIRILLSI A+ DYEIWQMDVKT FLNG LEE I+M QPEGF+ K E VC
Sbjct: 229 FSPVXMLKSIRILLSIXAYYDYEIWQMDVKTXFLNGHLEETIYMVQPEGFVVKDQEQKVC 288
Query: 182 KLNQSM-D*GKASRSWNIRFIKVIQIYGFSNRI 277
KL +S+ +ASRSWNI F + I+ YGF +
Sbjct: 289 KLQRSIYGLKQASRSWNIIFNEAIKSYGFEQNL 321
>emb|CAN67199.1| hypothetical protein VITISV_017217 [Vitis vinifera]
Length = 961
Score = 113 bits (283), Expect = 2e-23
Identities = 60/87 (68%), Positives = 68/87 (78%), Gaps = 1/87 (1%)
Frame = +2
Query: 2 FSPVAMLKSIRILLSIAAHMDYEIWQMDVKTAFLNGSLEENIHMKQPEGFIAKG*EHLVC 181
FSPVAMLKSIRILLSIAA+ DYEIWQMDVKT FLNG LEE I+M Q EGF+ K E VC
Sbjct: 665 FSPVAMLKSIRILLSIAAYYDYEIWQMDVKTTFLNGHLEETIYMVQSEGFVVKDQEQKVC 724
Query: 182 KLNQSM-D*GKASRSWNIRFIKVIQIY 259
KL +S+ +ASRSWNIRF + I+ Y
Sbjct: 725 KLQRSIYGLKQASRSWNIRFSEAIKSY 751
>gb|ABF97047.1| retrotransposon protein, putative, Ty1-copia subclass [Oryza sativa
Japonica Group]
Length = 1248
Score = 110 bits (276), Expect(2) = 4e-23
Identities = 56/89 (62%), Positives = 72/89 (80%), Gaps = 1/89 (1%)
Frame = +2
Query: 2 FSPVAMLKSIRILLSIAAHMDYEIWQMDVKTAFLNGSLEENIHMKQPEGFIAKG*EHLVC 181
FSPVAMLKSIRI+L+IAA+ DYEIWQMDVKTAFLNG+L+E+++M QP+GF+ +C
Sbjct: 828 FSPVAMLKSIRIVLAIAAYFDYEIWQMDVKTAFLNGNLDEDVYMTQPKGFVDPQSAKKIC 887
Query: 182 KLNQSMD*GK-ASRSWNIRFIKVIQIYGF 265
KL +S+ K ASRSWNIRF +V++ GF
Sbjct: 888 KLQKSIYRLKQASRSWNIRFDEVVKALGF 916
Score = 22.7 bits (47), Expect(2) = 4e-23
Identities = 8/17 (47%), Positives = 12/17 (70%)
Frame = +1
Query: 274 DKSCVYKRCDGSVVVIL 324
++ CVYK+ GS +V L
Sbjct: 921 EEPCVYKKISGSALVFL 937
>gb|AAP44605.1| putative polyprotein [Oryza sativa Japonica Group]
Length = 1161
Score = 110 bits (276), Expect(2) = 4e-23
Identities = 56/89 (62%), Positives = 72/89 (80%), Gaps = 1/89 (1%)
Frame = +2
Query: 2 FSPVAMLKSIRILLSIAAHMDYEIWQMDVKTAFLNGSLEENIHMKQPEGFIAKG*EHLVC 181
FSPVAMLKSIRI+L+IAA+ DYEIWQMDVKTAFLNG+L+E+++M QP+GF+ +C
Sbjct: 741 FSPVAMLKSIRIVLAIAAYFDYEIWQMDVKTAFLNGNLDEDVYMTQPKGFVDPQSAKKIC 800
Query: 182 KLNQSMD*GK-ASRSWNIRFIKVIQIYGF 265
KL +S+ K ASRSWNIRF +V++ GF
Sbjct: 801 KLQKSIYRLKQASRSWNIRFDEVVKALGF 829
Score = 22.7 bits (47), Expect(2) = 4e-23
Identities = 8/17 (47%), Positives = 12/17 (70%)
Frame = +1
Query: 274 DKSCVYKRCDGSVVVIL 324
++ CVYK+ GS +V L
Sbjct: 834 EEPCVYKKISGSALVFL 850
>gb|ABA97705.1| retrotransposon protein, putative, Ty1-copia subclass [Oryza sativa
Japonica Group]
Length = 810
Score = 111 bits (278), Expect = 9e-23
Identities = 56/89 (62%), Positives = 71/89 (79%), Gaps = 1/89 (1%)
Frame = +2
Query: 2 FSPVAMLKSIRILLSIAAHMDYEIWQMDVKTAFLNGSLEENIHMKQPEGFIAKG*EHLVC 181
FSPVAMLKSIRI+L+IAA+ DYEIWQMDVKTA LNG+L+E+++M QP+GF+ +C
Sbjct: 585 FSPVAMLKSIRIVLTIAAYFDYEIWQMDVKTALLNGNLDEDVYMTQPKGFVDPQSAKKIC 644
Query: 182 KLNQSM-D*GKASRSWNIRFIKVIQIYGF 265
KL +S+ KASRSWNIRF KV++ GF
Sbjct: 645 KLQKSIYGLKKASRSWNIRFDKVVKALGF 673
>dbj|BAA22288.1| polyprotein [Oryza australiensis]
Length = 1317
Score = 110 bits (275), Expect = 2e-22
Identities = 56/89 (62%), Positives = 72/89 (80%), Gaps = 1/89 (1%)
Frame = +2
Query: 2 FSPVAMLKSIRILLSIAAHMDYEIWQMDVKTAFLNGSLEENIHMKQPEGFIAKG*EHLVC 181
FSPVAMLKSIRI+L+IAA+ DYEIWQMDVKTAFLNG+L E+++M QP+GF+ +C
Sbjct: 879 FSPVAMLKSIRIILAIAAYFDYEIWQMDVKTAFLNGNLSEDVYMIQPQGFVDPESPGKIC 938
Query: 182 KLNQSM-D*GKASRSWNIRFIKVIQIYGF 265
KL +S+ +ASRSWNIRF +VI+ +GF
Sbjct: 939 KLQKSIYGLKQASRSWNIRFDEVIKGFGF 967
>gb|AAC26250.1| contains similarity to reverse transcriptase (Pfam: rvt.hmm, score
19.29) [Arabidopsis thaliana] gi|7267136|emb|CAB80804.1|
putative retrotransposon protein [Arabidopsis thaliana]
Length = 964
Score = 110 bits (274), Expect = 3e-22
Identities = 56/89 (62%), Positives = 70/89 (78%), Gaps = 1/89 (1%)
Frame = +2
Query: 2 FSPVAMLKSIRILLSIAAHMDYEIWQMDVKTAFLNGSLEENIHMKQPEGFIAKG*EHLVC 181
+SPVAMLKSIRILL+ AAH DYEIWQMDVKTAFLNG+LEE+++M QPEGF VC
Sbjct: 526 YSPVAMLKSIRILLATAAHYDYEIWQMDVKTAFLNGNLEEHVYMTQPEGFTVPEAARKVC 585
Query: 182 KLNQSM-D*GKASRSWNIRFIKVIQIYGF 265
KL++S+ +ASRSWN+RF + I+ + F
Sbjct: 586 KLHRSIYGLKQASRSWNLRFNEAIKEFDF 614
>gb|ABF97213.1| retrotransposon protein, putative, Ty1-copia subclass [Oryza sativa
Japonica Group]
Length = 1142
Score = 110 bits (274), Expect = 3e-22
Identities = 57/101 (56%), Positives = 76/101 (75%), Gaps = 3/101 (2%)
Frame = +2
Query: 2 FSPVAMLKSIRILLSIAAHMDYEIWQMDVKTAFLNGSLEENIHMKQPEGFIAKG*EHLVC 181
F PVAMLKSIRI+L+IAA+ DYEIWQMDVKTAFLNG+L+E+++M QP+GF+ +C
Sbjct: 802 FLPVAMLKSIRIVLAIAAYFDYEIWQMDVKTAFLNGNLDEDVYMTQPKGFVDPQSAKKIC 861
Query: 182 KLNQSM-D*GKASRSWNIRFIKVIQIYGF--SNRISLVYTK 295
KL +S+ +ASRSWNIRF +V++ GF + + VY K
Sbjct: 862 KLQKSIYGLKQASRSWNIRFDEVVKALGFVKNEEVPCVYKK 902
>gb|AAS01945.1| putative polyprotein [Oryza sativa Japonica Group]
Length = 1084
Score = 110 bits (274), Expect = 3e-22
Identities = 57/101 (56%), Positives = 76/101 (75%), Gaps = 3/101 (2%)
Frame = +2
Query: 2 FSPVAMLKSIRILLSIAAHMDYEIWQMDVKTAFLNGSLEENIHMKQPEGFIAKG*EHLVC 181
F PVAMLKSIRI+L+IAA+ DYEIWQMDVKTAFLNG+L+E+++M QP+GF+ +C
Sbjct: 744 FLPVAMLKSIRIVLAIAAYFDYEIWQMDVKTAFLNGNLDEDVYMTQPKGFVDPQSAKKIC 803
Query: 182 KLNQSM-D*GKASRSWNIRFIKVIQIYGF--SNRISLVYTK 295
KL +S+ +ASRSWNIRF +V++ GF + + VY K
Sbjct: 804 KLQKSIYGLKQASRSWNIRFDEVVKALGFVKNEEVPCVYKK 844
>gb|AAM74249.1|AC074355_11 Putative retroelement [Oryza sativa Japonica Group]
Length = 700
Score = 109 bits (272), Expect = 4e-22
Identities = 55/89 (61%), Positives = 72/89 (80%), Gaps = 1/89 (1%)
Frame = +2
Query: 2 FSPVAMLKSIRILLSIAAHMDYEIWQMDVKTAFLNGSLEENIHMKQPEGFIAKG*EHLVC 181
FSPVAMLKSIRI+L+IAA+ DYEIWQMDVKTAFL+G+L+E+++M QP+GF+ +C
Sbjct: 433 FSPVAMLKSIRIVLAIAAYFDYEIWQMDVKTAFLSGNLDEDVYMTQPKGFVDPQSAKKIC 492
Query: 182 KLNQSM-D*GKASRSWNIRFIKVIQIYGF 265
KL +S+ +ASRSWNIRF +VI+ GF
Sbjct: 493 KLQKSIYGLKQASRSWNIRFDEVIKALGF 521
>gb|AAP52343.2| retrotransposon protein, putative, Ty1-copia subclass [Oryza sativa
Japonica Group]
Length = 655
Score = 109 bits (272), Expect = 4e-22
Identities = 55/89 (61%), Positives = 72/89 (80%), Gaps = 1/89 (1%)
Frame = +2
Query: 2 FSPVAMLKSIRILLSIAAHMDYEIWQMDVKTAFLNGSLEENIHMKQPEGFIAKG*EHLVC 181
FSPVAMLKSIRI+L+IAA+ DYEIWQMDVKTAFL+G+L+E+++M QP+GF+ +C
Sbjct: 388 FSPVAMLKSIRIVLAIAAYFDYEIWQMDVKTAFLSGNLDEDVYMTQPKGFVDPQSAKKIC 447
Query: 182 KLNQSM-D*GKASRSWNIRFIKVIQIYGF 265
KL +S+ +ASRSWNIRF +VI+ GF
Sbjct: 448 KLQKSIYGLKQASRSWNIRFDEVIKALGF 476
>emb|CAE04463.2| OSJNBa0029L02.4 [Oryza sativa Japonica Group]
Length = 746
Score = 108 bits (271), Expect = 6e-22
Identities = 54/89 (60%), Positives = 71/89 (79%), Gaps = 1/89 (1%)
Frame = +2
Query: 2 FSPVAMLKSIRILLSIAAHMDYEIWQMDVKTAFLNGSLEENIHMKQPEGFIAKG*EHLVC 181
FSPV MLKSIRI+L+IAA+ DYEIWQMDVKTAFLNG+L+E+++M QP+GF+ +C
Sbjct: 488 FSPVTMLKSIRIVLAIAAYFDYEIWQMDVKTAFLNGNLDEDVYMTQPKGFVDPQSAKKIC 547
Query: 182 KLNQSM-D*GKASRSWNIRFIKVIQIYGF 265
KL +S+ +ASRSWNIRF +V++ GF
Sbjct: 548 KLQKSIYGLKQASRSWNIRFDEVVKASGF 576
>gb|ADB85429.1| putative retrotransposon protein [Phyllostachys edulis]
Length = 1313
Score = 107 bits (268), Expect = 1e-21
Identities = 56/89 (62%), Positives = 69/89 (77%), Gaps = 1/89 (1%)
Frame = +2
Query: 2 FSPVAMLKSIRILLSIAAHMDYEIWQMDVKTAFLNGSLEENIHMKQPEGFIAKG*EHLVC 181
FS VAMLKSIRI+L+IAA+ DYEIWQMDVKTAFLNG L E+++M QPEGF+ VC
Sbjct: 875 FSLVAMLKSIRIILAIAAYFDYEIWQMDVKTAFLNGKLSEDVYMTQPEGFVDPNNASKVC 934
Query: 182 KLNQSM-D*GKASRSWNIRFIKVIQIYGF 265
KL +S+ +ASRSWNIRF + I+ +GF
Sbjct: 935 KLQKSIYGLKQASRSWNIRFDEEIKRFGF 963
>emb|CAE04999.2| OSJNBb0093G06.7 [Oryza sativa Japonica Group]
Length = 923
Score = 107 bits (268), Expect = 1e-21
Identities = 52/89 (58%), Positives = 71/89 (79%), Gaps = 1/89 (1%)
Frame = +2
Query: 2 FSPVAMLKSIRILLSIAAHMDYEIWQMDVKTAFLNGSLEENIHMKQPEGFIAKG*EHLVC 181
FSP+AMLKSIRI+L+IAA+ DYEIWQMDVK AFLNG+L+E+++M QP+GF+ +C
Sbjct: 762 FSPIAMLKSIRIVLAIAAYFDYEIWQMDVKIAFLNGNLDEDVYMTQPKGFVDPQSAKKIC 821
Query: 182 KLNQSM-D*GKASRSWNIRFIKVIQIYGF 265
KL +S+ +ASRSWNIRF ++++ GF
Sbjct: 822 KLQKSIYGLKQASRSWNIRFDEIVKALGF 850
>ref|XP_004978922.1| PREDICTED: uncharacterized protein LOC101776990, partial [Setaria
italica]
Length = 1686
Score = 106 bits (265), Expect = 3e-21
Identities = 58/101 (57%), Positives = 75/101 (74%), Gaps = 3/101 (2%)
Frame = +2
Query: 2 FSPVAMLKSIRILLSIAAHMDYEIWQMDVKTAFLNGSLEENIHMKQPEGFIAKG*EHLVC 181
FSPV MLKSIRI+L+IAA+ DYEIWQMDVKTAFLNG+L ++++M QPEGF+ VC
Sbjct: 290 FSPVVMLKSIRIILAIAAYFDYEIWQMDVKTAFLNGNLAKDVYMIQPEGFVDPKNAGKVC 349
Query: 182 KLNQSM-D*GKASRSWNIRFIKVIQIYGF--SNRISLVYTK 295
KL +S+ +ASRSWNIRF +V++ + F + S VY K
Sbjct: 350 KLQRSIYGLKQASRSWNIRFDEVVKGFDFTKNEEESCVYKK 390
>gb|ABF97393.1| retrotransposon protein, putative, Ty1-copia subclass [Oryza sativa
Japonica Group]
Length = 1073
Score = 106 bits (265), Expect = 3e-21
Identities = 52/89 (58%), Positives = 72/89 (80%), Gaps = 1/89 (1%)
Frame = +2
Query: 2 FSPVAMLKSIRILLSIAAHMDYEIWQMDVKTAFLNGSLEENIHMKQPEGFIAKG*EHLVC 181
FSPVAMLKSIRI+L+IAA+ DYEIWQM+VKTAFLNG+ +E+++M QP+GF+ ++C
Sbjct: 809 FSPVAMLKSIRIVLAIAAYFDYEIWQMEVKTAFLNGNHDEDVYMTQPKGFVDLQSAKMIC 868
Query: 182 KLNQSM-D*GKASRSWNIRFIKVIQIYGF 265
KL +S+ +ASRSWNIRF ++++ GF
Sbjct: 869 KLQKSIYGLKQASRSWNIRFDELVKALGF 897
>gb|AAR06328.1| putative polyprotein [Oryza sativa Japonica Group]
Length = 1063
Score = 106 bits (265), Expect = 3e-21
Identities = 52/89 (58%), Positives = 72/89 (80%), Gaps = 1/89 (1%)
Frame = +2
Query: 2 FSPVAMLKSIRILLSIAAHMDYEIWQMDVKTAFLNGSLEENIHMKQPEGFIAKG*EHLVC 181
FSPVAMLKSIRI+L+IAA+ DYEIWQM+VKTAFLNG+ +E+++M QP+GF+ ++C
Sbjct: 799 FSPVAMLKSIRIVLAIAAYFDYEIWQMEVKTAFLNGNHDEDVYMTQPKGFVDLQSAKMIC 858
Query: 182 KLNQSM-D*GKASRSWNIRFIKVIQIYGF 265
KL +S+ +ASRSWNIRF ++++ GF
Sbjct: 859 KLQKSIYGLKQASRSWNIRFDELVKALGF 887