BLASTX nr result
ID: Zingiber23_contig00045529
seq
BLASTX 2.2.25 [Feb-01-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= Zingiber23_contig00045529
(275 letters)
Database: ./nr
37,332,560 sequences; 13,225,080,153 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
ref|XP_006372643.1| RNA polymerase transcriptional regulation me... 58 3e-16
ref|XP_002331927.1| predicted protein [Populus trichocarpa] 58 3e-16
ref|XP_003531638.1| PREDICTED: mediator of RNA polymerase II tra... 60 4e-16
ref|XP_006585556.1| PREDICTED: mediator of RNA polymerase II tra... 60 4e-16
gb|AGZ15418.1| mediator of RNA polymerase II transcription subun... 60 6e-16
gb|ESW07605.1| hypothetical protein PHAVU_010G143300g [Phaseolus... 60 6e-16
ref|XP_006853781.1| hypothetical protein AMTR_s00056p00208470 [A... 57 2e-15
gb|EMJ18951.1| hypothetical protein PRUPE_ppa010369mg [Prunus pe... 57 3e-15
dbj|BAK05999.1| predicted protein [Hordeum vulgare subsp. vulgar... 56 4e-15
gb|EMT25034.1| Putative mediator of RNA polymerase II transcript... 56 4e-15
gb|EOY26988.1| RNA polymerase transcriptional regulation mediato... 55 5e-15
ref|XP_004510328.1| PREDICTED: mediator of RNA polymerase II tra... 56 5e-15
ref|XP_004510329.1| PREDICTED: mediator of RNA polymerase II tra... 56 5e-15
gb|EPS70398.1| hypothetical protein M569_04362, partial [Genlise... 57 7e-15
ref|XP_002515912.1| RNA polymerase II mediator complex subunit, ... 54 1e-14
ref|XP_004149176.1| PREDICTED: LOW QUALITY PROTEIN: mediator of ... 58 1e-14
ref|XP_002282496.1| PREDICTED: putative mediator of RNA polymera... 56 1e-14
emb|CAN68925.1| hypothetical protein VITISV_044247 [Vitis vinifera] 56 1e-14
ref|XP_006466167.1| PREDICTED: mediator of RNA polymerase II tra... 58 2e-14
ref|XP_006426448.1| hypothetical protein CICLE_v10026335mg [Citr... 58 2e-14
>ref|XP_006372643.1| RNA polymerase transcriptional regulation mediator-related family
protein [Populus trichocarpa]
gi|550319272|gb|ERP50440.1| RNA polymerase
transcriptional regulation mediator-related family
protein [Populus trichocarpa]
Length = 259
Score = 57.8 bits (138), Expect(2) = 3e-16
Identities = 28/42 (66%), Positives = 30/42 (71%)
Frame = +3
Query: 150 YDSSCGNEQLRS*FVHILDLPQLSKTTDTEYALGEVMEPHLF 275
YD +C NEQLRS +H LDL L K T TEY L EVMEPHLF
Sbjct: 65 YDWTCNNEQLRSQSIHPLDLSHLLKMTGTEYMLSEVMEPHLF 106
Score = 52.8 bits (125), Expect(2) = 3e-16
Identities = 24/37 (64%), Positives = 26/37 (70%)
Frame = +2
Query: 38 EQSPRADMAGIFFFNQLWFNTSPLDRKLVFDYFASLP 148
+Q P DM GI F +QLW NT PLDR LVFDYFA P
Sbjct: 27 QQPPGTDMTGICFRDQLWLNTYPLDRNLVFDYFALSP 63
>ref|XP_002331927.1| predicted protein [Populus trichocarpa]
Length = 235
Score = 57.8 bits (138), Expect(2) = 3e-16
Identities = 28/42 (66%), Positives = 30/42 (71%)
Frame = +3
Query: 150 YDSSCGNEQLRS*FVHILDLPQLSKTTDTEYALGEVMEPHLF 275
YD +C NEQLRS +H LDL L K T TEY L EVMEPHLF
Sbjct: 41 YDWTCNNEQLRSQSIHPLDLSHLLKMTGTEYMLSEVMEPHLF 82
Score = 52.8 bits (125), Expect(2) = 3e-16
Identities = 24/37 (64%), Positives = 26/37 (70%)
Frame = +2
Query: 38 EQSPRADMAGIFFFNQLWFNTSPLDRKLVFDYFASLP 148
+Q P DM GI F +QLW NT PLDR LVFDYFA P
Sbjct: 3 QQPPGTDMTGICFRDQLWLNTYPLDRNLVFDYFALSP 39
>ref|XP_003531638.1| PREDICTED: mediator of RNA polymerase II transcription subunit
6-like isoform X1 [Glycine max]
Length = 252
Score = 59.7 bits (143), Expect(2) = 4e-16
Identities = 29/42 (69%), Positives = 31/42 (73%)
Frame = +3
Query: 150 YDSSCGNEQLRS*FVHILDLPQLSKTTDTEYALGEVMEPHLF 275
YD +C NEQLR VH LD+ QLSK T TEY L EVMEPHLF
Sbjct: 55 YDWTCNNEQLRMRSVHPLDISQLSKMTGTEYMLSEVMEPHLF 96
Score = 50.4 bits (119), Expect(2) = 4e-16
Identities = 23/36 (63%), Positives = 25/36 (69%)
Frame = +2
Query: 41 QSPRADMAGIFFFNQLWFNTSPLDRKLVFDYFASLP 148
Q P DM GI F +QLW N+ PLDR LVFDYFA P
Sbjct: 18 QPPGTDMTGICFRDQLWLNSFPLDRNLVFDYFALSP 53
>ref|XP_006585556.1| PREDICTED: mediator of RNA polymerase II transcription subunit
6-like isoform X2 [Glycine max]
Length = 249
Score = 59.7 bits (143), Expect(2) = 4e-16
Identities = 29/42 (69%), Positives = 31/42 (73%)
Frame = +3
Query: 150 YDSSCGNEQLRS*FVHILDLPQLSKTTDTEYALGEVMEPHLF 275
YD +C NEQLR VH LD+ QLSK T TEY L EVMEPHLF
Sbjct: 55 YDWTCNNEQLRMRSVHPLDISQLSKMTGTEYMLSEVMEPHLF 96
Score = 50.4 bits (119), Expect(2) = 4e-16
Identities = 23/36 (63%), Positives = 25/36 (69%)
Frame = +2
Query: 41 QSPRADMAGIFFFNQLWFNTSPLDRKLVFDYFASLP 148
Q P DM GI F +QLW N+ PLDR LVFDYFA P
Sbjct: 18 QPPGTDMTGICFRDQLWLNSFPLDRNLVFDYFALSP 53
>gb|AGZ15418.1| mediator of RNA polymerase II transcription subunit 6 [Phaseolus
vulgaris]
Length = 250
Score = 60.5 bits (145), Expect(2) = 6e-16
Identities = 30/42 (71%), Positives = 31/42 (73%)
Frame = +3
Query: 150 YDSSCGNEQLRS*FVHILDLPQLSKTTDTEYALGEVMEPHLF 275
YD +C NEQLR VH LDL QLSK T TEY L EVMEPHLF
Sbjct: 53 YDWTCNNEQLRMRSVHPLDLSQLSKMTGTEYMLSEVMEPHLF 94
Score = 48.9 bits (115), Expect(2) = 6e-16
Identities = 22/34 (64%), Positives = 24/34 (70%)
Frame = +2
Query: 47 PRADMAGIFFFNQLWFNTSPLDRKLVFDYFASLP 148
P DM GI F +QLW N+ PLDR LVFDYFA P
Sbjct: 18 PGTDMTGICFRDQLWLNSLPLDRNLVFDYFALSP 51
>gb|ESW07605.1| hypothetical protein PHAVU_010G143300g [Phaseolus vulgaris]
Length = 247
Score = 60.5 bits (145), Expect(2) = 6e-16
Identities = 30/42 (71%), Positives = 31/42 (73%)
Frame = +3
Query: 150 YDSSCGNEQLRS*FVHILDLPQLSKTTDTEYALGEVMEPHLF 275
YD +C NEQLR VH LDL QLSK T TEY L EVMEPHLF
Sbjct: 53 YDWTCNNEQLRMRSVHPLDLSQLSKMTGTEYMLSEVMEPHLF 94
Score = 48.9 bits (115), Expect(2) = 6e-16
Identities = 22/34 (64%), Positives = 24/34 (70%)
Frame = +2
Query: 47 PRADMAGIFFFNQLWFNTSPLDRKLVFDYFASLP 148
P DM GI F +QLW N+ PLDR LVFDYFA P
Sbjct: 18 PGTDMTGICFRDQLWLNSFPLDRNLVFDYFALSP 51
>ref|XP_006853781.1| hypothetical protein AMTR_s00056p00208470 [Amborella trichopoda]
gi|548857442|gb|ERN15248.1| hypothetical protein
AMTR_s00056p00208470 [Amborella trichopoda]
Length = 174
Score = 57.0 bits (136), Expect(2) = 2e-15
Identities = 27/42 (64%), Positives = 30/42 (71%)
Frame = +3
Query: 150 YDSSCGNEQLRS*FVHILDLPQLSKTTDTEYALGEVMEPHLF 275
YD +C NEQLR +H LD+ QLSK T EY L EVMEPHLF
Sbjct: 63 YDWTCNNEQLRMRSIHPLDISQLSKMTGIEYMLNEVMEPHLF 104
Score = 50.4 bits (119), Expect(2) = 2e-15
Identities = 23/34 (67%), Positives = 24/34 (70%)
Frame = +2
Query: 47 PRADMAGIFFFNQLWFNTSPLDRKLVFDYFASLP 148
P DM GI F +QLW NT PLDR LVFDYFA P
Sbjct: 28 PGTDMTGICFRDQLWLNTYPLDRNLVFDYFALSP 61
>gb|EMJ18951.1| hypothetical protein PRUPE_ppa010369mg [Prunus persica]
Length = 252
Score = 56.6 bits (135), Expect(2) = 3e-15
Identities = 27/42 (64%), Positives = 30/42 (71%)
Frame = +3
Query: 150 YDSSCGNEQLRS*FVHILDLPQLSKTTDTEYALGEVMEPHLF 275
YD +C NEQLR +H LD LSK T TEY+L EVMEPHLF
Sbjct: 58 YDWTCNNEQLRQRSIHPLDPSHLSKMTGTEYSLNEVMEPHLF 99
Score = 50.4 bits (119), Expect(2) = 3e-15
Identities = 23/36 (63%), Positives = 25/36 (69%)
Frame = +2
Query: 41 QSPRADMAGIFFFNQLWFNTSPLDRKLVFDYFASLP 148
Q P DM GI F +QLW N+ PLDR LVFDYFA P
Sbjct: 21 QPPGTDMTGICFKDQLWLNSYPLDRNLVFDYFAISP 56
>dbj|BAK05999.1| predicted protein [Hordeum vulgare subsp. vulgare]
gi|326503272|dbj|BAJ99261.1| predicted protein [Hordeum
vulgare subsp. vulgare]
Length = 249
Score = 56.2 bits (134), Expect(2) = 4e-15
Identities = 26/42 (61%), Positives = 30/42 (71%)
Frame = +3
Query: 150 YDSSCGNEQLRS*FVHILDLPQLSKTTDTEYALGEVMEPHLF 275
YD +C NE LRS +H LD+ QL+K T EY L EVMEPHLF
Sbjct: 57 YDITCNNESLRSRQIHPLDMSQLTKMTGLEYVLSEVMEPHLF 98
Score = 50.4 bits (119), Expect(2) = 4e-15
Identities = 23/34 (67%), Positives = 24/34 (70%)
Frame = +2
Query: 47 PRADMAGIFFFNQLWFNTSPLDRKLVFDYFASLP 148
P DM GI F +QLW NT PLDR LVFDYFA P
Sbjct: 22 PGTDMTGICFRDQLWLNTYPLDRNLVFDYFALSP 55
>gb|EMT25034.1| Putative mediator of RNA polymerase II transcription subunit 6
[Aegilops tauschii]
Length = 246
Score = 56.2 bits (134), Expect(2) = 4e-15
Identities = 26/42 (61%), Positives = 30/42 (71%)
Frame = +3
Query: 150 YDSSCGNEQLRS*FVHILDLPQLSKTTDTEYALGEVMEPHLF 275
YD +C NE LRS +H LD+ QL+K T EY L EVMEPHLF
Sbjct: 54 YDITCNNESLRSRQIHPLDMSQLTKMTGLEYVLSEVMEPHLF 95
Score = 50.4 bits (119), Expect(2) = 4e-15
Identities = 23/34 (67%), Positives = 24/34 (70%)
Frame = +2
Query: 47 PRADMAGIFFFNQLWFNTSPLDRKLVFDYFASLP 148
P DM GI F +QLW NT PLDR LVFDYFA P
Sbjct: 19 PGTDMTGICFRDQLWLNTYPLDRNLVFDYFALSP 52
>gb|EOY26988.1| RNA polymerase transcriptional regulation mediator-related isoform
1 [Theobroma cacao]
Length = 257
Score = 54.7 bits (130), Expect(2) = 5e-15
Identities = 26/42 (61%), Positives = 30/42 (71%)
Frame = +3
Query: 150 YDSSCGNEQLRS*FVHILDLPQLSKTTDTEYALGEVMEPHLF 275
YD +C NEQLR +H LD+ QLSK T EY L EVMEP+LF
Sbjct: 63 YDWTCNNEQLRMHSIHPLDISQLSKMTGVEYMLSEVMEPNLF 104
Score = 51.6 bits (122), Expect(2) = 5e-15
Identities = 23/36 (63%), Positives = 25/36 (69%)
Frame = +2
Query: 41 QSPRADMAGIFFFNQLWFNTSPLDRKLVFDYFASLP 148
Q P DM GI F +QLW NT PLDR L+FDYFA P
Sbjct: 26 QPPGTDMTGICFRDQLWLNTYPLDRNLIFDYFALSP 61
>ref|XP_004510328.1| PREDICTED: mediator of RNA polymerase II transcription subunit
6-like isoform X1 [Cicer arietinum]
Length = 252
Score = 55.8 bits (133), Expect(2) = 5e-15
Identities = 28/42 (66%), Positives = 30/42 (71%)
Frame = +3
Query: 150 YDSSCGNEQLRS*FVHILDLPQLSKTTDTEYALGEVMEPHLF 275
YD + NEQLR +H LDL QLSK T TEY L EVMEPHLF
Sbjct: 54 YDWTSNNEQLRMRSLHPLDLSQLSKMTGTEYVLSEVMEPHLF 95
Score = 50.4 bits (119), Expect(2) = 5e-15
Identities = 23/36 (63%), Positives = 25/36 (69%)
Frame = +2
Query: 41 QSPRADMAGIFFFNQLWFNTSPLDRKLVFDYFASLP 148
Q P DM GI F +QLW N+ PLDR LVFDYFA P
Sbjct: 17 QPPGTDMTGICFRDQLWLNSYPLDRNLVFDYFALSP 52
>ref|XP_004510329.1| PREDICTED: mediator of RNA polymerase II transcription subunit
6-like isoform X2 [Cicer arietinum]
Length = 249
Score = 55.8 bits (133), Expect(2) = 5e-15
Identities = 28/42 (66%), Positives = 30/42 (71%)
Frame = +3
Query: 150 YDSSCGNEQLRS*FVHILDLPQLSKTTDTEYALGEVMEPHLF 275
YD + NEQLR +H LDL QLSK T TEY L EVMEPHLF
Sbjct: 54 YDWTSNNEQLRMRSLHPLDLSQLSKMTGTEYVLSEVMEPHLF 95
Score = 50.4 bits (119), Expect(2) = 5e-15
Identities = 23/36 (63%), Positives = 25/36 (69%)
Frame = +2
Query: 41 QSPRADMAGIFFFNQLWFNTSPLDRKLVFDYFASLP 148
Q P DM GI F +QLW N+ PLDR LVFDYFA P
Sbjct: 17 QPPGTDMTGICFRDQLWLNSYPLDRNLVFDYFALSP 52
>gb|EPS70398.1| hypothetical protein M569_04362, partial [Genlisea aurea]
Length = 238
Score = 57.4 bits (137), Expect(2) = 7e-15
Identities = 27/42 (64%), Positives = 31/42 (73%)
Frame = +3
Query: 150 YDSSCGNEQLRS*FVHILDLPQLSKTTDTEYALGEVMEPHLF 275
YD +C NEQLR +H LD QLSK + TEYAL EV+EPHLF
Sbjct: 42 YDYACNNEQLRLRSIHPLDASQLSKMSGTEYALSEVLEPHLF 83
Score = 48.5 bits (114), Expect(2) = 7e-15
Identities = 22/34 (64%), Positives = 23/34 (67%)
Frame = +2
Query: 47 PRADMAGIFFFNQLWFNTSPLDRKLVFDYFASLP 148
P DM GI F +QLW NT PLDR VFDYFA P
Sbjct: 7 PGTDMTGICFRDQLWLNTYPLDRNTVFDYFALSP 40
>ref|XP_002515912.1| RNA polymerase II mediator complex subunit, putative [Ricinus
communis] gi|223544817|gb|EEF46332.1| RNA polymerase II
mediator complex subunit, putative [Ricinus communis]
Length = 251
Score = 53.5 bits (127), Expect(2) = 1e-14
Identities = 26/42 (61%), Positives = 30/42 (71%)
Frame = +3
Query: 150 YDSSCGNEQLRS*FVHILDLPQLSKTTDTEYALGEVMEPHLF 275
YD +C NEQLR +H LDL LSK T TEY L EV+EP+LF
Sbjct: 58 YDWTCNNEQLRLQSIHPLDLSHLSKMTGTEYMLNEVIEPNLF 99
Score = 51.6 bits (122), Expect(2) = 1e-14
Identities = 23/36 (63%), Positives = 25/36 (69%)
Frame = +2
Query: 41 QSPRADMAGIFFFNQLWFNTSPLDRKLVFDYFASLP 148
Q P DM GI F +QLW NT PLDR L+FDYFA P
Sbjct: 21 QPPGTDMTGICFRDQLWLNTYPLDRNLIFDYFALSP 56
>ref|XP_004149176.1| PREDICTED: LOW QUALITY PROTEIN: mediator of RNA polymerase II
transcription subunit 6-like [Cucumis sativus]
Length = 260
Score = 57.8 bits (138), Expect(2) = 1e-14
Identities = 28/42 (66%), Positives = 30/42 (71%)
Frame = +3
Query: 150 YDSSCGNEQLRS*FVHILDLPQLSKTTDTEYALGEVMEPHLF 275
YD +C NEQLR +H LDL QLSK T EY L EVMEPHLF
Sbjct: 66 YDWTCNNEQLRMRSIHPLDLSQLSKMTGIEYMLNEVMEPHLF 107
Score = 47.0 bits (110), Expect(2) = 1e-14
Identities = 24/42 (57%), Positives = 27/42 (64%), Gaps = 3/42 (7%)
Frame = +2
Query: 32 SSEQSPRADMA---GIFFFNQLWFNTSPLDRKLVFDYFASLP 148
++ Q P DM GI F +QLW NT PLDR LVFDYFA P
Sbjct: 23 AAPQPPGTDMTNLPGICFRDQLWLNTYPLDRNLVFDYFALSP 64
>ref|XP_002282496.1| PREDICTED: putative mediator of RNA polymerase II transcription
subunit 6 [Vitis vinifera]
Length = 258
Score = 55.8 bits (133), Expect(2) = 1e-14
Identities = 27/42 (64%), Positives = 29/42 (69%)
Frame = +3
Query: 150 YDSSCGNEQLRS*FVHILDLPQLSKTTDTEYALGEVMEPHLF 275
YD +C NEQLR +H LD LSK T TEY L EVMEPHLF
Sbjct: 64 YDWTCNNEQLRLRSIHPLDTSHLSKMTGTEYMLNEVMEPHLF 105
Score = 48.9 bits (115), Expect(2) = 1e-14
Identities = 22/34 (64%), Positives = 24/34 (70%)
Frame = +2
Query: 47 PRADMAGIFFFNQLWFNTSPLDRKLVFDYFASLP 148
P DM GI F +QLW N+ PLDR LVFDYFA P
Sbjct: 29 PGTDMTGICFRDQLWLNSYPLDRNLVFDYFALSP 62
>emb|CAN68925.1| hypothetical protein VITISV_044247 [Vitis vinifera]
Length = 253
Score = 55.8 bits (133), Expect(2) = 1e-14
Identities = 27/42 (64%), Positives = 29/42 (69%)
Frame = +3
Query: 150 YDSSCGNEQLRS*FVHILDLPQLSKTTDTEYALGEVMEPHLF 275
YD +C NEQLR +H LD LSK T TEY L EVMEPHLF
Sbjct: 59 YDWTCNNEQLRLRSIHPLDTSHLSKMTGTEYMLNEVMEPHLF 100
Score = 48.9 bits (115), Expect(2) = 1e-14
Identities = 22/34 (64%), Positives = 24/34 (70%)
Frame = +2
Query: 47 PRADMAGIFFFNQLWFNTSPLDRKLVFDYFASLP 148
P DM GI F +QLW N+ PLDR LVFDYFA P
Sbjct: 24 PGTDMTGICFRDQLWLNSYPLDRNLVFDYFALSP 57
>ref|XP_006466167.1| PREDICTED: mediator of RNA polymerase II transcription subunit
6-like [Citrus sinensis]
Length = 251
Score = 57.8 bits (138), Expect(2) = 2e-14
Identities = 27/42 (64%), Positives = 30/42 (71%)
Frame = +3
Query: 150 YDSSCGNEQLRS*FVHILDLPQLSKTTDTEYALGEVMEPHLF 275
YD +C NEQLR +H LD+ QLSK T EY L EVMEPHLF
Sbjct: 56 YDRTCNNEQLRMRSIHPLDISQLSKMTGIEYMLSEVMEPHLF 97
Score = 46.6 bits (109), Expect(2) = 2e-14
Identities = 19/30 (63%), Positives = 22/30 (73%)
Frame = +2
Query: 47 PRADMAGIFFFNQLWFNTSPLDRKLVFDYF 136
P DM GI F +QLW NT PLDR ++FDYF
Sbjct: 21 PGTDMTGICFRDQLWLNTYPLDRNMIFDYF 50
>ref|XP_006426448.1| hypothetical protein CICLE_v10026335mg [Citrus clementina]
gi|557528438|gb|ESR39688.1| hypothetical protein
CICLE_v10026335mg [Citrus clementina]
Length = 251
Score = 57.8 bits (138), Expect(2) = 2e-14
Identities = 27/42 (64%), Positives = 30/42 (71%)
Frame = +3
Query: 150 YDSSCGNEQLRS*FVHILDLPQLSKTTDTEYALGEVMEPHLF 275
YD +C NEQLR +H LD+ QLSK T EY L EVMEPHLF
Sbjct: 56 YDRTCNNEQLRMRSIHPLDISQLSKMTGIEYMLSEVMEPHLF 97
Score = 46.6 bits (109), Expect(2) = 2e-14
Identities = 19/30 (63%), Positives = 22/30 (73%)
Frame = +2
Query: 47 PRADMAGIFFFNQLWFNTSPLDRKLVFDYF 136
P DM GI F +QLW NT PLDR ++FDYF
Sbjct: 21 PGTDMTGICFRDQLWLNTYPLDRNMIFDYF 50