BLASTX nr result
ID: Zingiber23_contig00043892
seq
BLASTX 2.2.25 [Feb-01-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= Zingiber23_contig00043892
(606 letters)
Database: ./nr
37,332,560 sequences; 13,225,080,153 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
emb|CAG70342.1| CP, RT, RNaseH and protease polyprotein [Cacao s... 154 1e-36
emb|CAD59232.1| polyprotein [Cacao swollen shoot virus] 154 1e-36
ref|NP_041734.1| polyprotein [Cacao swollen shoot virus] gi|3478... 154 1e-36
emb|CAE81279.1| polyprotein [Cacao swollen shoot virus] 152 5e-36
emb|CAE76628.1| polyprotein [Cacao swollen shoot virus] 152 3e-35
gb|AER45341.1| polyprotein, partial [Fig badnavirus 1] 147 6e-35
gb|AER45335.1| polyprotein, partial [Fig badnavirus 1] gi|354990... 147 8e-35
gb|AER45329.1| polyprotein, partial [Fig badnavirus 1] gi|354990... 147 8e-35
gb|AER45323.1| polyprotein, partial [Fig badnavirus 1] gi|354990... 147 8e-35
gb|AFF58911.1| polyprotein, partial [Fig badnavirus 1] gi|381144... 147 8e-35
gb|AER42640.1| polyprotein, partial [Fig badnavirus 1] gi|381144... 147 8e-35
gb|AER42638.1| polyprotein, partial [Fig badnavirus 1] gi|354832... 147 8e-35
gb|AER45327.1| polyprotein, partial [Fig badnavirus 1] gi|354990... 147 1e-34
gb|AFF58899.1| polyprotein, partial [Fig badnavirus 1] 147 1e-34
ref|YP_009002585.1| polyprotein [Hibiscus bacilliform virus GD1]... 147 2e-34
gb|AER45353.1| polyprotein, partial [Fig badnavirus 1] 145 2e-34
gb|AER45369.1| polyprotein, partial [Fig badnavirus 1] 145 3e-34
gb|AER45361.1| polyprotein, partial [Fig badnavirus 1] 145 3e-34
gb|ACE76858.1| polyprotein [Citrus yellow mosaic virus] 150 3e-34
gb|ACH86210.1| unknown [Citrus yellow mosaic virus] 150 3e-34
>emb|CAG70342.1| CP, RT, RNaseH and protease polyprotein [Cacao swollen shoot virus]
Length = 1868
Score = 154 bits (390), Expect(2) = 1e-36
Identities = 74/130 (56%), Positives = 99/130 (76%), Gaps = 4/130 (3%)
Frame = +1
Query: 229 GQRCLFNARRMMRRF----TGGRYNQTLE*QVNLEAQLQLSMKERVNLVPPEVLYRFRRD 396
GQR +FN RR RR TG RY +TLE +++ + L+LSM+ER LVP EVLYR RRD
Sbjct: 36 GQRRIFNLRRQARRLRRSVTGSRYQETLEQEIDPQTTLRLSMQERARLVPAEVLYRSRRD 95
Query: 397 DADHRVYIHGSEEAISCIDGQQIDRSVIQPESFKELRQSGMQFVHIGLVQLRLQILHRRE 576
HRVY H SEE++ CI Q+DR+ IQPES ++L+++GM F+HIG++Q+R+QILHR+E
Sbjct: 96 TVHHRVYTHRSEESVLCIGNNQVDRAFIQPESLEQLQRTGMSFIHIGILQVRIQILHRQE 155
Query: 577 EGTLALVIFR 606
EGT+ALV+FR
Sbjct: 156 EGTMALVVFR 165
Score = 24.6 bits (52), Expect(2) = 1e-36
Identities = 13/25 (52%), Positives = 17/25 (68%), Gaps = 1/25 (4%)
Frame = +2
Query: 155 SRPSISERTTQ-REQALFEDQIRRY 226
S PS++ + Q RE L+EDQIR Y
Sbjct: 9 SVPSVTSTSEQQREGPLYEDQIRDY 33
>emb|CAD59232.1| polyprotein [Cacao swollen shoot virus]
Length = 1839
Score = 154 bits (390), Expect(2) = 1e-36
Identities = 73/130 (56%), Positives = 100/130 (76%), Gaps = 4/130 (3%)
Frame = +1
Query: 229 GQRCLFN----ARRMMRRFTGGRYNQTLE*QVNLEAQLQLSMKERVNLVPPEVLYRFRRD 396
GQR +FN ARR+ R G RY +TLE +++ + L+LSM+ER LVP EVLYR RRD
Sbjct: 37 GQRRIFNLQRRARRLRRSMMGSRYQETLEQEIDPQTTLRLSMQERARLVPAEVLYRSRRD 96
Query: 397 DADHRVYIHGSEEAISCIDGQQIDRSVIQPESFKELRQSGMQFVHIGLVQLRLQILHRRE 576
HRVY H SEE++ C+ G Q+DR+ IQPES ++L+++GM F+HIG++Q+R+QILHR+E
Sbjct: 97 TVHHRVYTHRSEESVLCVGGSQVDRAFIQPESLEQLQRTGMSFIHIGILQVRIQILHRQE 156
Query: 577 EGTLALVIFR 606
EGT+ALV+FR
Sbjct: 157 EGTMALVVFR 166
Score = 24.6 bits (52), Expect(2) = 1e-36
Identities = 12/24 (50%), Positives = 17/24 (70%), Gaps = 2/24 (8%)
Frame = +2
Query: 161 PSISERTTQR--EQALFEDQIRRY 226
PS++ T++R E L+EDQIR Y
Sbjct: 11 PSVTTTTSERNREGPLYEDQIRDY 34
>ref|NP_041734.1| polyprotein [Cacao swollen shoot virus] gi|347871|gb|AAA03171.1|
polyprotein [Cacao swollen shoot virus]
Length = 1834
Score = 154 bits (390), Expect(2) = 1e-36
Identities = 73/130 (56%), Positives = 100/130 (76%), Gaps = 4/130 (3%)
Frame = +1
Query: 229 GQRCLFN----ARRMMRRFTGGRYNQTLE*QVNLEAQLQLSMKERVNLVPPEVLYRFRRD 396
GQR +FN ARR+ R G RY +TLE +++ + L+LSM+ER LVP EVLYR RRD
Sbjct: 37 GQRRIFNLRRRARRLRRSMMGSRYQETLEQEIDPQTTLRLSMQERARLVPAEVLYRSRRD 96
Query: 397 DADHRVYIHGSEEAISCIDGQQIDRSVIQPESFKELRQSGMQFVHIGLVQLRLQILHRRE 576
HRVY H SEE++ C+ G Q+DR+ IQPES ++L+++GM F+HIG++Q+R+QILHR+E
Sbjct: 97 TVHHRVYTHRSEESVLCVGGSQVDRAFIQPESLEQLQRTGMSFIHIGILQVRIQILHRQE 156
Query: 577 EGTLALVIFR 606
EGT+ALV+FR
Sbjct: 157 EGTMALVVFR 166
Score = 24.6 bits (52), Expect(2) = 1e-36
Identities = 12/24 (50%), Positives = 17/24 (70%), Gaps = 2/24 (8%)
Frame = +2
Query: 161 PSISERTTQ--REQALFEDQIRRY 226
PS++ T++ RE L+EDQIR Y
Sbjct: 11 PSVTTTTSEQNREGPLYEDQIRDY 34
>emb|CAE81279.1| polyprotein [Cacao swollen shoot virus]
Length = 1816
Score = 152 bits (384), Expect(2) = 5e-36
Identities = 72/129 (55%), Positives = 99/129 (76%), Gaps = 4/129 (3%)
Frame = +1
Query: 232 QRCLFN----ARRMMRRFTGGRYNQTLE*QVNLEAQLQLSMKERVNLVPPEVLYRFRRDD 399
QR +FN ARR+ R G RY +TLE +++ + L+LSM+ER LVP EVLYR RRD
Sbjct: 38 QRRIFNLRRRARRLRRSMMGSRYQETLEQEIDPQTTLRLSMQERARLVPAEVLYRSRRDT 97
Query: 400 ADHRVYIHGSEEAISCIDGQQIDRSVIQPESFKELRQSGMQFVHIGLVQLRLQILHRREE 579
HRVY H SEE++ C+ G Q+DR+ IQPES ++L+++GM F+HIG++Q+R+QILHR+EE
Sbjct: 98 VHHRVYTHRSEESVLCVGGNQVDRAFIQPESLEQLQRTGMSFIHIGILQVRIQILHRQEE 157
Query: 580 GTLALVIFR 606
GT+ALV+FR
Sbjct: 158 GTMALVVFR 166
Score = 25.0 bits (53), Expect(2) = 5e-36
Identities = 12/24 (50%), Positives = 17/24 (70%), Gaps = 2/24 (8%)
Frame = +2
Query: 161 PSISERTTQ--REQALFEDQIRRY 226
PS++ T++ RE L+EDQIR Y
Sbjct: 11 PSVTSTTSEQNREGPLYEDQIRDY 34
>emb|CAE76628.1| polyprotein [Cacao swollen shoot virus]
Length = 1847
Score = 152 bits (384), Expect(2) = 3e-35
Identities = 69/120 (57%), Positives = 95/120 (79%)
Frame = +1
Query: 247 NARRMMRRFTGGRYNQTLE*QVNLEAQLQLSMKERVNLVPPEVLYRFRRDDADHRVYIHG 426
NARR+ R G RY +TLE +++ + L+LSM+ER LVP EVLYR RRD HRVY H
Sbjct: 47 NARRLRRSMMGSRYQETLEQEIDPQTTLRLSMQERARLVPAEVLYRSRRDTVHHRVYTHR 106
Query: 427 SEEAISCIDGQQIDRSVIQPESFKELRQSGMQFVHIGLVQLRLQILHRREEGTLALVIFR 606
SEE++ C+ G Q+DR+ IQPES ++L+++GM F+HIG++Q+R+QILHR+EEGT+ALV+FR
Sbjct: 107 SEESVLCVGGNQVDRAFIQPESLEQLQRTGMSFIHIGILQVRIQILHRQEEGTMALVVFR 166
Score = 22.7 bits (47), Expect(2) = 3e-35
Identities = 11/24 (45%), Positives = 16/24 (66%), Gaps = 2/24 (8%)
Frame = +2
Query: 161 PSISERTTQ--REQALFEDQIRRY 226
PS++ ++ RE L+EDQIR Y
Sbjct: 11 PSVTSTISEQNREGPLYEDQIRDY 34
>gb|AER45341.1| polyprotein, partial [Fig badnavirus 1]
Length = 198
Score = 147 bits (372), Expect(2) = 6e-35
Identities = 74/118 (62%), Positives = 94/118 (79%)
Frame = +1
Query: 253 RRMMRRFTGGRYNQTLE*QVNLEAQLQLSMKERVNLVPPEVLYRFRRDDADHRVYIHGSE 432
RR M R G RYNQTLE V+ E +L SM+ER NLVP EVLYR RRD+ +H+VY H SE
Sbjct: 51 RRTMGRMRGRRYNQTLEQIVDPEVELNQSMQERANLVPAEVLYRSRRDNINHQVYNHRSE 110
Query: 433 EAISCIDGQQIDRSVIQPESFKELRQSGMQFVHIGLVQLRLQILHRREEGTLALVIFR 606
EA+ C+ G+Q DR IQP SF+EL++SGMQF+H+G++Q+RLQILHR +EGT+ALV+FR
Sbjct: 111 EAMLCV-GEQQDRMFIQPNSFQELKRSGMQFIHLGVLQVRLQILHRTDEGTMALVVFR 167
Score = 26.2 bits (56), Expect(2) = 6e-35
Identities = 13/25 (52%), Positives = 17/25 (68%), Gaps = 3/25 (12%)
Frame = +2
Query: 161 PSISERTTQ---REQALFEDQIRRY 226
P++S R + R+Q LFEDQIR Y
Sbjct: 12 PAVSTRRREEINRDQPLFEDQIRDY 36
>gb|AER45335.1| polyprotein, partial [Fig badnavirus 1] gi|354990615|gb|AER45357.1|
polyprotein, partial [Fig badnavirus 1]
gi|354990618|gb|AER45359.1| polyprotein, partial [Fig
badnavirus 1] gi|354990630|gb|AER45367.1| polyprotein,
partial [Fig badnavirus 1] gi|354990636|gb|AER45371.1|
polyprotein, partial [Fig badnavirus 1]
Length = 198
Score = 147 bits (371), Expect(2) = 8e-35
Identities = 74/118 (62%), Positives = 94/118 (79%)
Frame = +1
Query: 253 RRMMRRFTGGRYNQTLE*QVNLEAQLQLSMKERVNLVPPEVLYRFRRDDADHRVYIHGSE 432
RR M R G RYNQTLE V+ E +L SM+ER NLVP EVLYR RRD+ +H+VY H SE
Sbjct: 51 RRTMGRMRGRRYNQTLEQIVDPEVELNQSMQERANLVPAEVLYRSRRDNINHQVYNHRSE 110
Query: 433 EAISCIDGQQIDRSVIQPESFKELRQSGMQFVHIGLVQLRLQILHRREEGTLALVIFR 606
EA+ C+ G+Q DR IQP SF+EL++SGMQF+H+G++Q+RLQILHR +EGT+ALV+FR
Sbjct: 111 EAMLCV-GEQQDRMFIQPNSFQELQRSGMQFIHLGVLQVRLQILHRTDEGTMALVVFR 167
Score = 26.2 bits (56), Expect(2) = 8e-35
Identities = 13/25 (52%), Positives = 17/25 (68%), Gaps = 3/25 (12%)
Frame = +2
Query: 161 PSISERTTQ---REQALFEDQIRRY 226
P++S R + R+Q LFEDQIR Y
Sbjct: 12 PAVSTRRREEINRDQPLFEDQIRDY 36
>gb|AER45329.1| polyprotein, partial [Fig badnavirus 1] gi|354990579|gb|AER45333.1|
polyprotein, partial [Fig badnavirus 1]
gi|354990594|gb|AER45343.1| polyprotein, partial [Fig
badnavirus 1] gi|354990597|gb|AER45345.1| polyprotein,
partial [Fig badnavirus 1] gi|354990600|gb|AER45347.1|
polyprotein, partial [Fig badnavirus 1]
gi|354990606|gb|AER45351.1| polyprotein, partial [Fig
badnavirus 1] gi|354990612|gb|AER45355.1| polyprotein,
partial [Fig badnavirus 1] gi|354990624|gb|AER45363.1|
polyprotein, partial [Fig badnavirus 1]
gi|354990627|gb|AER45365.1| polyprotein, partial [Fig
badnavirus 1]
Length = 198
Score = 147 bits (371), Expect(2) = 8e-35
Identities = 74/118 (62%), Positives = 94/118 (79%)
Frame = +1
Query: 253 RRMMRRFTGGRYNQTLE*QVNLEAQLQLSMKERVNLVPPEVLYRFRRDDADHRVYIHGSE 432
RR M R G RYNQTLE V+ E +L SM+ER NLVP EVLYR RRD+ +H+VY H SE
Sbjct: 51 RRTMGRMRGRRYNQTLEQIVDPEVELNQSMQERANLVPAEVLYRSRRDNINHQVYNHRSE 110
Query: 433 EAISCIDGQQIDRSVIQPESFKELRQSGMQFVHIGLVQLRLQILHRREEGTLALVIFR 606
EA+ C+ G+Q DR IQP SF+EL++SGMQF+H+G++Q+RLQILHR +EGT+ALV+FR
Sbjct: 111 EAMLCV-GEQQDRMFIQPNSFQELQRSGMQFIHLGVLQVRLQILHRADEGTMALVVFR 167
Score = 26.2 bits (56), Expect(2) = 8e-35
Identities = 13/25 (52%), Positives = 17/25 (68%), Gaps = 3/25 (12%)
Frame = +2
Query: 161 PSISERTTQ---REQALFEDQIRRY 226
P++S R + R+Q LFEDQIR Y
Sbjct: 12 PAVSTRRREEINRDQPLFEDQIRDY 36
>gb|AER45323.1| polyprotein, partial [Fig badnavirus 1] gi|354990567|gb|AER45325.1|
polyprotein, partial [Fig badnavirus 1]
gi|354990576|gb|AER45331.1| polyprotein, partial [Fig
badnavirus 1] gi|354990603|gb|AER45349.1| polyprotein,
partial [Fig badnavirus 1] gi|354990639|gb|AER45373.1|
polyprotein, partial [Fig badnavirus 1]
gi|354990642|gb|AER45375.1| polyprotein, partial [Fig
badnavirus 1]
Length = 198
Score = 147 bits (371), Expect(2) = 8e-35
Identities = 74/118 (62%), Positives = 94/118 (79%)
Frame = +1
Query: 253 RRMMRRFTGGRYNQTLE*QVNLEAQLQLSMKERVNLVPPEVLYRFRRDDADHRVYIHGSE 432
RR M R G RYNQTLE V+ E +L SM+ER NLVP EVLYR RRD+ +H+VY H SE
Sbjct: 51 RRTMGRMRGRRYNQTLEQIVDPEVELNQSMQERANLVPAEVLYRSRRDNINHQVYNHRSE 110
Query: 433 EAISCIDGQQIDRSVIQPESFKELRQSGMQFVHIGLVQLRLQILHRREEGTLALVIFR 606
EA+ C+ G+Q DR IQP SF+EL++SGMQF+H+G++Q+RLQILHR +EGT+ALV+FR
Sbjct: 111 EAMLCV-GEQQDRMFIQPNSFQELQRSGMQFIHLGVLQVRLQILHRADEGTMALVVFR 167
Score = 26.2 bits (56), Expect(2) = 8e-35
Identities = 13/25 (52%), Positives = 17/25 (68%), Gaps = 3/25 (12%)
Frame = +2
Query: 161 PSISERTTQ---REQALFEDQIRRY 226
P++S R + R+Q LFEDQIR Y
Sbjct: 12 PAVSTRRREEINRDQPLFEDQIRDY 36
>gb|AFF58911.1| polyprotein, partial [Fig badnavirus 1] gi|381144412|gb|AFF58913.1|
polyprotein, partial [Fig badnavirus 1]
gi|381144415|gb|AFF58915.1| polyprotein, partial [Fig
badnavirus 1] gi|381144418|gb|AFF58917.1| polyprotein,
partial [Fig badnavirus 1]
Length = 197
Score = 147 bits (371), Expect(2) = 8e-35
Identities = 74/118 (62%), Positives = 94/118 (79%)
Frame = +1
Query: 253 RRMMRRFTGGRYNQTLE*QVNLEAQLQLSMKERVNLVPPEVLYRFRRDDADHRVYIHGSE 432
RR M R G RYNQTLE V+ E +L SM+ER NLVP EVLYR RRD+ +H+VY H SE
Sbjct: 51 RRTMGRMRGRRYNQTLEQIVDPEVELNQSMQERANLVPAEVLYRSRRDNINHQVYNHRSE 110
Query: 433 EAISCIDGQQIDRSVIQPESFKELRQSGMQFVHIGLVQLRLQILHRREEGTLALVIFR 606
EA+ C+ G+Q DR IQP SF+EL++SGMQF+H+G++Q+RLQILHR +EGT+ALV+FR
Sbjct: 111 EAMLCV-GEQQDRMFIQPNSFQELQRSGMQFIHLGVLQVRLQILHRADEGTMALVVFR 167
Score = 26.2 bits (56), Expect(2) = 8e-35
Identities = 13/25 (52%), Positives = 17/25 (68%), Gaps = 3/25 (12%)
Frame = +2
Query: 161 PSISERTTQ---REQALFEDQIRRY 226
P++S R + R+Q LFEDQIR Y
Sbjct: 12 PAVSTRRREEINRDQPLFEDQIRDY 36
>gb|AER42640.1| polyprotein, partial [Fig badnavirus 1] gi|381144400|gb|AFF58905.1|
polyprotein, partial [Fig badnavirus 1]
gi|381144403|gb|AFF58907.1| polyprotein, partial [Fig
badnavirus 1] gi|381144406|gb|AFF58909.1| polyprotein,
partial [Fig badnavirus 1]
Length = 197
Score = 147 bits (371), Expect(2) = 8e-35
Identities = 74/118 (62%), Positives = 94/118 (79%)
Frame = +1
Query: 253 RRMMRRFTGGRYNQTLE*QVNLEAQLQLSMKERVNLVPPEVLYRFRRDDADHRVYIHGSE 432
RR M R G RYNQTLE V+ E +L SM+ER NLVP EVLYR RRD+ +H+VY H SE
Sbjct: 51 RRTMGRMRGRRYNQTLEQIVDPEVELNQSMQERANLVPAEVLYRSRRDNINHQVYNHRSE 110
Query: 433 EAISCIDGQQIDRSVIQPESFKELRQSGMQFVHIGLVQLRLQILHRREEGTLALVIFR 606
EA+ C+ G+Q DR IQP SF+EL++SGMQF+H+G++Q+RLQILHR +EGT+ALV+FR
Sbjct: 111 EAMLCV-GEQQDRMFIQPNSFQELQRSGMQFIHLGVLQVRLQILHRADEGTMALVVFR 167
Score = 26.2 bits (56), Expect(2) = 8e-35
Identities = 13/25 (52%), Positives = 17/25 (68%), Gaps = 3/25 (12%)
Frame = +2
Query: 161 PSISERTTQ---REQALFEDQIRRY 226
P++S R + R+Q LFEDQIR Y
Sbjct: 12 PAVSTRRREEINRDQPLFEDQIRDY 36
>gb|AER42638.1| polyprotein, partial [Fig badnavirus 1] gi|354832288|gb|AER42644.1|
polyprotein, partial [Fig badnavirus 1]
gi|354832291|gb|AER42646.1| polyprotein, partial [Fig
badnavirus 1] gi|381144394|gb|AFF58901.1| polyprotein,
partial [Fig badnavirus 1] gi|381144397|gb|AFF58903.1|
polyprotein, partial [Fig badnavirus 1]
Length = 197
Score = 147 bits (371), Expect(2) = 8e-35
Identities = 74/118 (62%), Positives = 94/118 (79%)
Frame = +1
Query: 253 RRMMRRFTGGRYNQTLE*QVNLEAQLQLSMKERVNLVPPEVLYRFRRDDADHRVYIHGSE 432
RR M R G RYNQTLE V+ E +L SM+ER NLVP EVLYR RRD+ +H+VY H SE
Sbjct: 51 RRTMGRMRGRRYNQTLEQIVDPEVELNQSMQERANLVPAEVLYRSRRDNINHQVYNHRSE 110
Query: 433 EAISCIDGQQIDRSVIQPESFKELRQSGMQFVHIGLVQLRLQILHRREEGTLALVIFR 606
EA+ C+ G+Q DR IQP SF+EL++SGMQF+H+G++Q+RLQILHR +EGT+ALV+FR
Sbjct: 111 EAMLCV-GEQQDRMFIQPNSFQELQRSGMQFIHLGVLQVRLQILHRTDEGTMALVVFR 167
Score = 26.2 bits (56), Expect(2) = 8e-35
Identities = 13/25 (52%), Positives = 17/25 (68%), Gaps = 3/25 (12%)
Frame = +2
Query: 161 PSISERTTQ---REQALFEDQIRRY 226
P++S R + R+Q LFEDQIR Y
Sbjct: 12 PAVSTRRREEINRDQPLFEDQIRDY 36
>gb|AER45327.1| polyprotein, partial [Fig badnavirus 1] gi|354990585|gb|AER45337.1|
polyprotein, partial [Fig badnavirus 1]
Length = 198
Score = 147 bits (370), Expect(2) = 1e-34
Identities = 73/118 (61%), Positives = 94/118 (79%)
Frame = +1
Query: 253 RRMMRRFTGGRYNQTLE*QVNLEAQLQLSMKERVNLVPPEVLYRFRRDDADHRVYIHGSE 432
RR M R G RYNQTLE V+ E +L SM+ER NLVP EVLYR RRD+ +H++Y H SE
Sbjct: 51 RRTMGRMRGRRYNQTLEQIVDPEVELNQSMQERANLVPAEVLYRSRRDNINHQIYNHRSE 110
Query: 433 EAISCIDGQQIDRSVIQPESFKELRQSGMQFVHIGLVQLRLQILHRREEGTLALVIFR 606
EA+ C+ G+Q DR IQP SF+EL++SGMQF+H+G++Q+RLQILHR +EGT+ALV+FR
Sbjct: 111 EAMLCV-GEQQDRMFIQPNSFQELQRSGMQFIHLGVLQVRLQILHRADEGTMALVVFR 167
Score = 26.2 bits (56), Expect(2) = 1e-34
Identities = 13/25 (52%), Positives = 17/25 (68%), Gaps = 3/25 (12%)
Frame = +2
Query: 161 PSISERTTQ---REQALFEDQIRRY 226
P++S R + R+Q LFEDQIR Y
Sbjct: 12 PAVSTRRREEINRDQPLFEDQIRDY 36
>gb|AFF58899.1| polyprotein, partial [Fig badnavirus 1]
Length = 197
Score = 147 bits (370), Expect(2) = 1e-34
Identities = 73/118 (61%), Positives = 94/118 (79%)
Frame = +1
Query: 253 RRMMRRFTGGRYNQTLE*QVNLEAQLQLSMKERVNLVPPEVLYRFRRDDADHRVYIHGSE 432
RR M R G RYNQTLE V+ E +L SM+ER NLVP EVLYR RRD+ +H++Y H SE
Sbjct: 51 RRTMGRMRGRRYNQTLEQIVDPEVELNQSMQERANLVPAEVLYRSRRDNINHQIYNHRSE 110
Query: 433 EAISCIDGQQIDRSVIQPESFKELRQSGMQFVHIGLVQLRLQILHRREEGTLALVIFR 606
EA+ C+ G+Q DR IQP SF+EL++SGMQF+H+G++Q+RLQILHR +EGT+ALV+FR
Sbjct: 111 EAMLCV-GEQQDRMFIQPNSFQELQRSGMQFIHLGVLQVRLQILHRADEGTMALVVFR 167
Score = 26.2 bits (56), Expect(2) = 1e-34
Identities = 13/25 (52%), Positives = 17/25 (68%), Gaps = 3/25 (12%)
Frame = +2
Query: 161 PSISERTTQ---REQALFEDQIRRY 226
P++S R + R+Q LFEDQIR Y
Sbjct: 12 PAVSTRRREEINRDQPLFEDQIRDY 36
>ref|YP_009002585.1| polyprotein [Hibiscus bacilliform virus GD1]
gi|584388573|gb|AHI90954.1| polyprotein [Hibiscus
bacilliform virus GD1]
Length = 1892
Score = 147 bits (371), Expect(2) = 2e-34
Identities = 72/119 (60%), Positives = 94/119 (78%), Gaps = 1/119 (0%)
Frame = +1
Query: 253 RRMMRRFTGGR-YNQTLE*QVNLEAQLQLSMKERVNLVPPEVLYRFRRDDADHRVYIHGS 429
RR+ RR TG + Y +TLE +V+ +A LQ+SM+ER LVP EVLYR RRD HRVY H S
Sbjct: 51 RRLRRRITGRQPYQETLEQEVDPQADLQMSMQERARLVPAEVLYRSRRDTIHHRVYSHRS 110
Query: 430 EEAISCIDGQQIDRSVIQPESFKELRQSGMQFVHIGLVQLRLQILHRREEGTLALVIFR 606
EEAI C DG Q+DR+ IQPES + L+++G+ F+HIG++Q+RLQILHR+ EGT+ALV+FR
Sbjct: 111 EEAILCTDGNQVDRTFIQPESMEALQRTGISFIHIGIMQVRLQILHRQNEGTMALVVFR 169
Score = 25.0 bits (53), Expect(2) = 2e-34
Identities = 13/34 (38%), Positives = 18/34 (52%)
Frame = +2
Query: 125 TRKAKGVMMTSRPSISERTTQREQALFEDQIRRY 226
T + V +R + + +RE LFEDQIR Y
Sbjct: 3 TTTTQTVPPVTRNATRRQQGERETPLFEDQIRDY 36
>gb|AER45353.1| polyprotein, partial [Fig badnavirus 1]
Length = 198
Score = 145 bits (367), Expect(2) = 2e-34
Identities = 73/118 (61%), Positives = 94/118 (79%)
Frame = +1
Query: 253 RRMMRRFTGGRYNQTLE*QVNLEAQLQLSMKERVNLVPPEVLYRFRRDDADHRVYIHGSE 432
R+ M R G RYNQTLE V+ E +L SM+ER NLVP EVLYR RRD+ +H+VY H SE
Sbjct: 51 RQTMGRMRGRRYNQTLEQIVDPEVELNQSMQERANLVPAEVLYRSRRDNINHQVYNHRSE 110
Query: 433 EAISCIDGQQIDRSVIQPESFKELRQSGMQFVHIGLVQLRLQILHRREEGTLALVIFR 606
EA+ C+ G+Q DR IQP SF+EL++SGMQF+H+G++Q+RLQILHR +EGT+ALV+FR
Sbjct: 111 EAMLCV-GEQQDRMFIQPNSFQELQRSGMQFIHLGVLQVRLQILHRADEGTMALVVFR 167
Score = 26.2 bits (56), Expect(2) = 2e-34
Identities = 13/25 (52%), Positives = 17/25 (68%), Gaps = 3/25 (12%)
Frame = +2
Query: 161 PSISERTTQ---REQALFEDQIRRY 226
P++S R + R+Q LFEDQIR Y
Sbjct: 12 PAVSTRRREEINRDQPLFEDQIRDY 36
>gb|AER45369.1| polyprotein, partial [Fig badnavirus 1]
Length = 198
Score = 145 bits (366), Expect(2) = 3e-34
Identities = 77/129 (59%), Positives = 99/129 (76%), Gaps = 4/129 (3%)
Frame = +1
Query: 232 QRCLFNARRMMRRFTGG----RYNQTLE*QVNLEAQLQLSMKERVNLVPPEVLYRFRRDD 399
QR F A + +RR TG RYNQTLE V+ E +L SM+ER NLVP EVLYR RRD+
Sbjct: 40 QRRRFVAEQAVRRTTGRMRGRRYNQTLEQIVDPEVELNQSMQERANLVPAEVLYRSRRDN 99
Query: 400 ADHRVYIHGSEEAISCIDGQQIDRSVIQPESFKELRQSGMQFVHIGLVQLRLQILHRREE 579
+H+VY H SEEA+ C+ G+Q DR IQP SF+EL++SGMQF+H+G++Q+RLQILHR +E
Sbjct: 100 INHQVYNHRSEEAMLCV-GEQQDRMFIQPNSFQELQRSGMQFIHLGVLQVRLQILHRTDE 158
Query: 580 GTLALVIFR 606
GT+ALV+FR
Sbjct: 159 GTMALVVFR 167
Score = 26.2 bits (56), Expect(2) = 3e-34
Identities = 13/25 (52%), Positives = 17/25 (68%), Gaps = 3/25 (12%)
Frame = +2
Query: 161 PSISERTTQ---REQALFEDQIRRY 226
P++S R + R+Q LFEDQIR Y
Sbjct: 12 PAVSTRRREEINRDQPLFEDQIRDY 36
>gb|AER45361.1| polyprotein, partial [Fig badnavirus 1]
Length = 198
Score = 145 bits (366), Expect(2) = 3e-34
Identities = 77/129 (59%), Positives = 99/129 (76%), Gaps = 4/129 (3%)
Frame = +1
Query: 232 QRCLFNARRMMRRFTGG----RYNQTLE*QVNLEAQLQLSMKERVNLVPPEVLYRFRRDD 399
QR F A + +RR TG RYNQTLE V+ E +L SM+ER NLVP EVLYR RRD+
Sbjct: 40 QRRRFVAEQAVRRTTGRMRGRRYNQTLEQIVDPEVELNQSMQERANLVPAEVLYRSRRDN 99
Query: 400 ADHRVYIHGSEEAISCIDGQQIDRSVIQPESFKELRQSGMQFVHIGLVQLRLQILHRREE 579
+H+VY H SEEA+ C+ G+Q DR IQP SF+EL++SGMQF+H+G++Q+RLQILHR +E
Sbjct: 100 INHQVYNHRSEEAMLCV-GEQQDRMFIQPNSFQELQRSGMQFIHLGVLQVRLQILHRADE 158
Query: 580 GTLALVIFR 606
GT+ALV+FR
Sbjct: 159 GTMALVVFR 167
Score = 26.2 bits (56), Expect(2) = 3e-34
Identities = 13/25 (52%), Positives = 17/25 (68%), Gaps = 3/25 (12%)
Frame = +2
Query: 161 PSISERTTQ---REQALFEDQIRRY 226
P++S R + R+Q LFEDQIR Y
Sbjct: 12 PAVSTRRREEINRDQPLFEDQIRDY 36
>gb|ACE76858.1| polyprotein [Citrus yellow mosaic virus]
Length = 1967
Score = 150 bits (378), Expect = 3e-34
Identities = 75/125 (60%), Positives = 92/125 (73%)
Frame = +1
Query: 232 QRCLFNARRMMRRFTGGRYNQTLE*QVNLEAQLQLSMKERVNLVPPEVLYRFRRDDADHR 411
QR N R + G YNQTLE V+ E LQLSM+ER LVP EVLYR R DD H+
Sbjct: 41 QRRRHNMGRRWNQLMGRPYNQTLEQVVDPEVALQLSMQERARLVPAEVLYRSRNDDRHHQ 100
Query: 412 VYIHGSEEAISCIDGQQIDRSVIQPESFKELRQSGMQFVHIGLVQLRLQILHRREEGTLA 591
VYIH SEEAI C+DG Q+DR +IQPES ++L +SGM F+H+G+VQ+R+QILHR+ EGT A
Sbjct: 101 VYIHRSEEAILCVDGDQVDRLLIQPESAEQLNRSGMSFIHMGIVQVRIQILHRQHEGTTA 160
Query: 592 LVIFR 606
LV+FR
Sbjct: 161 LVVFR 165
>gb|ACH86210.1| unknown [Citrus yellow mosaic virus]
Length = 463
Score = 150 bits (378), Expect = 3e-34
Identities = 75/125 (60%), Positives = 92/125 (73%)
Frame = +1
Query: 232 QRCLFNARRMMRRFTGGRYNQTLE*QVNLEAQLQLSMKERVNLVPPEVLYRFRRDDADHR 411
QR N R + G YNQTLE V+ E LQLSM+ER LVP EVLYR R DD H+
Sbjct: 41 QRRRHNMGRRWNQLIGRPYNQTLEQVVDPEVALQLSMQERARLVPAEVLYRSRNDDRHHQ 100
Query: 412 VYIHGSEEAISCIDGQQIDRSVIQPESFKELRQSGMQFVHIGLVQLRLQILHRREEGTLA 591
VYIH SEEAI C+DG Q+DR +IQPES ++L +SGM F+H+G+VQ+R+QILHR+ EGT A
Sbjct: 101 VYIHRSEEAILCVDGDQVDRLLIQPESAEQLNRSGMSFIHMGIVQVRIQILHRQHEGTTA 160
Query: 592 LVIFR 606
LV+FR
Sbjct: 161 LVVFR 165