BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Zingiber23_contig00042865
         (1458 letters)

Database: ./nr 
           37,332,560 sequences; 13,225,080,153 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

ref|XP_002439034.1| hypothetical protein SORBIDRAFT_10g030300 [S...   490   e-136
ref|XP_006656497.1| PREDICTED: RNA pseudouridine synthase 2, chl...   489   e-136
gb|EEC81320.1| hypothetical protein OsI_24484 [Oryza sativa Indi...   488   e-135
ref|NP_001058594.1| Os06g0717400 [Oryza sativa Japonica Group] g...   486   e-134
ref|XP_003634352.1| PREDICTED: RNA pseudourine synthase 2, chlor...   484   e-134
ref|XP_004966473.1| PREDICTED: RNA pseudouridine synthase 2, chl...   483   e-134
ref|XP_004143077.1| PREDICTED: RNA pseudourine synthase 2, chlor...   481   e-133
ref|XP_006473714.1| PREDICTED: RNA pseudouridine synthase 2, chl...   480   e-133
gb|ACG41877.1| RNA binding protein [Zea mays]                         479   e-133
ref|XP_003563280.1| PREDICTED: RNA pseudourine synthase 2, chlor...   479   e-132
ref|XP_004161095.1| PREDICTED: LOW QUALITY PROTEIN: RNA pseudour...   478   e-132
ref|NP_974151.1| RNA pseudourine synthase 2 [Arabidopsis thalian...   469   e-129
ref|XP_006390244.1| hypothetical protein EUTSA_v10018588mg [Eutr...   468   e-129
ref|XP_006302277.1| hypothetical protein CARUB_v10020321mg [Caps...   466   e-128
gb|EOY15125.1| Pseudouridine synthase family protein isoform 1 [...   465   e-128
ref|XP_006828851.1| hypothetical protein AMTR_s00001p00157430 [A...   462   e-127
ref|XP_002301949.1| pseudouridine synthase family protein [Popul...   462   e-127
gb|ESW08114.1| hypothetical protein PHAVU_009G019500g [Phaseolus...   458   e-126
gb|AAF26765.1|AC007396_14 T4O12.25 [Arabidopsis thaliana]             455   e-125
ref|XP_003523282.1| PREDICTED: RNA pseudouridine synthase 2, chl...   451   e-124

>ref|XP_002439034.1| hypothetical protein SORBIDRAFT_10g030300 [Sorghum bicolor]
            gi|241917257|gb|EER90401.1| hypothetical protein
            SORBIDRAFT_10g030300 [Sorghum bicolor]
          Length = 441

 Score =  490 bits (1261), Expect = e-136
 Identities = 244/388 (62%), Positives = 294/388 (75%), Gaps = 2/388 (0%)
 Frame = +2

Query: 197  CCNQSTGPESPPPPVVIRANHAGLRLEEKVEVGLQKTRIDSWISSRIRG--VSRARIQSS 370
            C + +   E+  P    +  H G+RLEE V VG  ++RID+WIS+R+ G  VSRAR+Q+S
Sbjct: 37   CVSSNASAEAAEPAESRKGGHGGMRLEEAVPVGEGRSRIDAWISARLGGGGVSRARVQAS 96

Query: 371  IKSGLVSVNGRTVNKASHVVKGGDMVYCMVSKLQPLRAEPEDIPLDIVYEDEHVLVVNKP 550
            I++GLV+VNGR V+K SH VKGGD+V C VS+LQPLRAE EDIPLDIVYED+HVLVVNKP
Sbjct: 97   IRAGLVAVNGRPVSKVSHTVKGGDLVSCTVSELQPLRAEAEDIPLDIVYEDDHVLVVNKP 156

Query: 551  AHMVVHPAPGNPNGTLVNAILHHCRLPTMACVKSNQAXXXXXXXXXXXXXXXLCTEQYTA 730
            AHMVVHPAPGN NGTLVNAILHHC++ T  C+ +  +                  +Q+  
Sbjct: 157  AHMVVHPAPGNANGTLVNAILHHCKISTFTCL-ARSSTGDECLDSSDDDIDVFNVDQFAT 215

Query: 731  EGIDLENCDALIRPGIVHRLDKGTSGLLVVAKDDHSHSHLAEQFKQHTIHRVYISLTSGI 910
            E    E  +AL+RPGIVHRLDKGTSGLLVVAKD+HSH+ LAEQFK HTI RVYISLT G+
Sbjct: 216  EDASSEVRNALVRPGIVHRLDKGTSGLLVVAKDEHSHAQLAEQFKLHTIRRVYISLTCGV 275

Query: 911  PNPSSGRIEVPIARDSNNRIRMAAVSGLNNSRHARYAASRYKVIEDFARGGAAMVQWRLE 1090
            PNP+SGRIE  IARD NNRIRM A++G +  R+AR+AASRYKV E F  GG+A+V+WRLE
Sbjct: 276  PNPNSGRIEASIARDPNNRIRMIAIAG-SGHRYARHAASRYKVREVFVGGGSALVEWRLE 334

Query: 1091 TGRTHQIRAHAKYLGIPLLGDEVYGGTKSMAXXXXXXXXXXXXHGHLTNILSKLERPCLH 1270
            TGRTHQIRAHAKY+GIPLLGDE YGGTKSMA            H  L+N++SK++RPCLH
Sbjct: 335  TGRTHQIRAHAKYIGIPLLGDETYGGTKSMALSLLRPRTPSKYHSDLSNLISKVDRPCLH 394

Query: 1271 AFSLGFKHPHTGEFLRFSCPPPEDFSEL 1354
            A  LGFKHPH+G+ L FSCPPP+DFSE+
Sbjct: 395  AALLGFKHPHSGKILEFSCPPPDDFSEV 422


>ref|XP_006656497.1| PREDICTED: RNA pseudouridine synthase 2, chloroplastic-like [Oryza
            brachyantha]
          Length = 442

 Score =  489 bits (1260), Expect = e-136
 Identities = 245/371 (66%), Positives = 289/371 (77%), Gaps = 2/371 (0%)
 Frame = +2

Query: 248  RANHAGLRLEEKVEVGLQKTRIDSWISSRIRG--VSRARIQSSIKSGLVSVNGRTVNKAS 421
            R  H G RLEE V  G  ++RID+WISSR+ G  VSRAR+Q+SI++GLV+VNGR V+K S
Sbjct: 51   RGGHGGTRLEEAVPAGEGRSRIDAWISSRLGGGGVSRARVQASIRAGLVAVNGRPVSKVS 110

Query: 422  HVVKGGDMVYCMVSKLQPLRAEPEDIPLDIVYEDEHVLVVNKPAHMVVHPAPGNPNGTLV 601
            H+VKGGDMV C VS+LQPLRAEPEDIPLDIVYED+H+LVVNKPAHMVVHPAPGN NGTLV
Sbjct: 111  HMVKGGDMVSCTVSELQPLRAEPEDIPLDIVYEDQHLLVVNKPAHMVVHPAPGNANGTLV 170

Query: 602  NAILHHCRLPTMACVKSNQAXXXXXXXXXXXXXXXLCTEQYTAEGIDLENCDALIRPGIV 781
            NAILHHC++ T  C+  N +                  +Q+T   +  E  +AL+RPGIV
Sbjct: 171  NAILHHCKISTFTCLARN-STDDECPDSSDDDIDVFHVDQFTTGEVSSEVREALVRPGIV 229

Query: 782  HRLDKGTSGLLVVAKDDHSHSHLAEQFKQHTIHRVYISLTSGIPNPSSGRIEVPIARDSN 961
            HRLDKGTSGLLVVAKD+HSH+ LAEQFK HTI RVYISLT G PNP+SGRIEVPIARD N
Sbjct: 230  HRLDKGTSGLLVVAKDEHSHAQLAEQFKLHTIRRVYISLTCGAPNPNSGRIEVPIARDPN 289

Query: 962  NRIRMAAVSGLNNSRHARYAASRYKVIEDFARGGAAMVQWRLETGRTHQIRAHAKYLGIP 1141
            NRIRM A  G +  R+AR+AASRYKV E FA GG+A+V+W+LETGRTHQIRAHAKYLGIP
Sbjct: 290  NRIRMIATPG-SGHRYARHAASRYKVREVFAGGGSALVEWKLETGRTHQIRAHAKYLGIP 348

Query: 1142 LLGDEVYGGTKSMAXXXXXXXXXXXXHGHLTNILSKLERPCLHAFSLGFKHPHTGEFLRF 1321
            LLGDE YGGTKSMA            H  L+N+++K++RPCLHA  LGFKHPH+G+ L F
Sbjct: 349  LLGDETYGGTKSMALSLLRPRTSSRYHCDLSNLIAKIDRPCLHAALLGFKHPHSGKILEF 408

Query: 1322 SCPPPEDFSEL 1354
            SCPPP+DF+E+
Sbjct: 409  SCPPPDDFTEV 419


>gb|EEC81320.1| hypothetical protein OsI_24484 [Oryza sativa Indica Group]
          Length = 445

 Score =  488 bits (1256), Expect = e-135
 Identities = 251/399 (62%), Positives = 295/399 (73%), Gaps = 2/399 (0%)
 Frame = +2

Query: 164  TRCRVPRRALCCCNQSTGPESPPPPVVIRANHAGLRLEEKVEVGLQKTRIDSWISSRIRG 343
            +RC     A C    +      P     R  H G RLEE V  G  ++RID+WIS+R+ G
Sbjct: 28   SRCVGASHARCLAADANAEAVAPSR---RGGHGGTRLEEAVPAGEGRSRIDAWISARLGG 84

Query: 344  --VSRARIQSSIKSGLVSVNGRTVNKASHVVKGGDMVYCMVSKLQPLRAEPEDIPLDIVY 517
              VSRARIQ+SI++GLV VNGR V+K SH+VKGGD+V C VS+LQPLRAEPEDIPLDIVY
Sbjct: 85   GGVSRARIQASIRAGLVVVNGRPVSKVSHMVKGGDIVSCTVSELQPLRAEPEDIPLDIVY 144

Query: 518  EDEHVLVVNKPAHMVVHPAPGNPNGTLVNAILHHCRLPTMACVKSNQAXXXXXXXXXXXX 697
            ED+H+LVVNKPAHMVVHPAPGN NGTLVNAILHHC++ T  C+  N +            
Sbjct: 145  EDDHLLVVNKPAHMVVHPAPGNANGTLVNAILHHCKISTFTCLARN-SIDDECPDSSDDD 203

Query: 698  XXXLCTEQYTAEGIDLENCDALIRPGIVHRLDKGTSGLLVVAKDDHSHSHLAEQFKQHTI 877
                  +Q+T   +  E  +AL+RPGIVHRLDKGTSGLLVVAKD+HSH+ LAEQFK HTI
Sbjct: 204  IDVFDIDQFTTGEVSSEVREALVRPGIVHRLDKGTSGLLVVAKDEHSHAQLAEQFKLHTI 263

Query: 878  HRVYISLTSGIPNPSSGRIEVPIARDSNNRIRMAAVSGLNNSRHARYAASRYKVIEDFAR 1057
             RVYISLT G PNP+SGRIEVPIARD NNRIRM A  G +  R+AR+AASRYKV E FA 
Sbjct: 264  RRVYISLTCGAPNPNSGRIEVPIARDPNNRIRMIATPG-SGHRYARHAASRYKVREVFAG 322

Query: 1058 GGAAMVQWRLETGRTHQIRAHAKYLGIPLLGDEVYGGTKSMAXXXXXXXXXXXXHGHLTN 1237
            GG+A+V+WRLETGRTHQIRAHAKYLGIPLLGDE YGGTKSMA            H  L+N
Sbjct: 323  GGSALVEWRLETGRTHQIRAHAKYLGIPLLGDETYGGTKSMALSLLRPRTPSRYHCDLSN 382

Query: 1238 ILSKLERPCLHAFSLGFKHPHTGEFLRFSCPPPEDFSEL 1354
            ++SK++RPCLHA  LGFKHPH+G+ L FSCPPP+DF+E+
Sbjct: 383  MISKIDRPCLHAALLGFKHPHSGKILEFSCPPPDDFTEV 421


>ref|NP_001058594.1| Os06g0717400 [Oryza sativa Japonica Group]
            gi|75252835|sp|Q5Z8P2.1|PUS2_ORYSJ RecName: Full=RNA
            pseudouridine synthase 2, chloroplastic; AltName:
            Full=RNA pseudouridylate synthase 2; AltName:
            Full=RNA-uridine isomerase 2; Flags: Precursor
            gi|53791796|dbj|BAD53590.1| ribosomal large subunit
            pseudouridine synthase-like [Oryza sativa Japonica Group]
            gi|54291043|dbj|BAD61720.1| ribosomal large subunit
            pseudouridine synthase-like [Oryza sativa Japonica Group]
            gi|113596634|dbj|BAF20508.1| Os06g0717400 [Oryza sativa
            Japonica Group] gi|215706335|dbj|BAG93191.1| unnamed
            protein product [Oryza sativa Japonica Group]
            gi|222636236|gb|EEE66368.1| hypothetical protein
            OsJ_22675 [Oryza sativa Japonica Group]
          Length = 445

 Score =  486 bits (1250), Expect = e-134
 Identities = 250/399 (62%), Positives = 294/399 (73%), Gaps = 2/399 (0%)
 Frame = +2

Query: 164  TRCRVPRRALCCCNQSTGPESPPPPVVIRANHAGLRLEEKVEVGLQKTRIDSWISSRIRG 343
            +RC     A C    +      P     R  H G RLEE V  G  ++RID+WIS+R+ G
Sbjct: 28   SRCVGASHARCLAADANAEAVAPSR---RGGHGGTRLEEAVPAGEGRSRIDAWISARLGG 84

Query: 344  --VSRARIQSSIKSGLVSVNGRTVNKASHVVKGGDMVYCMVSKLQPLRAEPEDIPLDIVY 517
              VSRARIQ+SI++GLV VNGR V+K SH+VKGGD+V C V +LQPLRAEPEDIPLDIVY
Sbjct: 85   GGVSRARIQASIRAGLVVVNGRPVSKVSHMVKGGDIVSCTVLELQPLRAEPEDIPLDIVY 144

Query: 518  EDEHVLVVNKPAHMVVHPAPGNPNGTLVNAILHHCRLPTMACVKSNQAXXXXXXXXXXXX 697
            ED+H+LVVNKPAHMVVHPAPGN NGTLVNAILHHC++ T  C+  N +            
Sbjct: 145  EDDHLLVVNKPAHMVVHPAPGNANGTLVNAILHHCKISTFTCLARN-SIDDECPDSSDDD 203

Query: 698  XXXLCTEQYTAEGIDLENCDALIRPGIVHRLDKGTSGLLVVAKDDHSHSHLAEQFKQHTI 877
                  +Q+T   +  E  +AL+RPGIVHRLDKGTSGLLVVAKD+HSH+ LAEQFK HTI
Sbjct: 204  IDVFDIDQFTTGEVSSEVREALVRPGIVHRLDKGTSGLLVVAKDEHSHAQLAEQFKLHTI 263

Query: 878  HRVYISLTSGIPNPSSGRIEVPIARDSNNRIRMAAVSGLNNSRHARYAASRYKVIEDFAR 1057
             RVYISLT G PNP+SGRIEVPIARD NNRIRM A  G +  R+AR+AASRYKV E FA 
Sbjct: 264  RRVYISLTCGAPNPNSGRIEVPIARDPNNRIRMIATPG-SGHRYARHAASRYKVREVFAG 322

Query: 1058 GGAAMVQWRLETGRTHQIRAHAKYLGIPLLGDEVYGGTKSMAXXXXXXXXXXXXHGHLTN 1237
            GG+A+V+WRLETGRTHQIRAHAKYLGIPLLGDE YGGTKSMA            H  L+N
Sbjct: 323  GGSALVEWRLETGRTHQIRAHAKYLGIPLLGDETYGGTKSMALSLLRPRTPSRYHCDLSN 382

Query: 1238 ILSKLERPCLHAFSLGFKHPHTGEFLRFSCPPPEDFSEL 1354
            ++SK++RPCLHA  LGFKHPH+G+ L FSCPPP+DF+E+
Sbjct: 383  MISKIDRPCLHAALLGFKHPHSGKILEFSCPPPDDFTEV 421


>ref|XP_003634352.1| PREDICTED: RNA pseudourine synthase 2, chloroplastic-like [Vitis
            vinifera] gi|302141717|emb|CBI18920.3| unnamed protein
            product [Vitis vinifera]
          Length = 433

 Score =  484 bits (1247), Expect = e-134
 Identities = 251/406 (61%), Positives = 296/406 (72%), Gaps = 8/406 (1%)
 Frame = +2

Query: 161  PTRCRVPRRALCCCNQSTGPESPPPPVVI---RANHAGLRLEEKV---EVGLQKTRIDSW 322
            P  C    R L  C+ ST      P V +   R N+AG+RLEE V        K R+DSW
Sbjct: 27   PKSCSRVFRILRACSNSTDE----PLVSVSGRRTNYAGVRLEETVVDVNSDSGKLRLDSW 82

Query: 323  ISSRIRGVSRARIQSSIKSGLVSVNGRTVNKASHVVKGGDMVYCMVSKLQPLRAEPEDIP 502
            ISSRI G+SRAR+QSSI+SGLVSVN R V+K SHV++ GD V C +S+LQPLRAEPEDIP
Sbjct: 83   ISSRIIGISRARVQSSIRSGLVSVNDRIVDKVSHVIRAGDKVNCTISELQPLRAEPEDIP 142

Query: 503  LDIVYEDEHVLVVNKPAHMVVHPAPGNPNGTLVNAILHHCRLPTMACVKSNQAXXXXXXX 682
            LDIVYEDEHVLVVNKPAHMVVHPAPGN +GTLVN ILHHC LPT+A    +         
Sbjct: 143  LDIVYEDEHVLVVNKPAHMVVHPAPGNASGTLVNGILHHCSLPTVALPNRDSEEDD---- 198

Query: 683  XXXXXXXXLCTEQYT--AEGIDLENCDALIRPGIVHRLDKGTSGLLVVAKDDHSHSHLAE 856
                    +  +++   A G +   C+  IRPGIVHRLDKGTSGLLVVAKD+HSH+HL+E
Sbjct: 199  --------ISDDEFNSFAAGQNCGTCETNIRPGIVHRLDKGTSGLLVVAKDEHSHAHLSE 250

Query: 857  QFKQHTIHRVYISLTSGIPNPSSGRIEVPIARDSNNRIRMAAVSGLNNSRHARYAASRYK 1036
            QFK H+IHRVYISLTSG+P P SGR+E+P+ RD NNRIRM AV G +NS  AR+AASRYK
Sbjct: 251  QFKLHSIHRVYISLTSGVPTPLSGRVEIPVGRDPNNRIRMTAVPGPSNSGQARHAASRYK 310

Query: 1037 VIEDFARGGAAMVQWRLETGRTHQIRAHAKYLGIPLLGDEVYGGTKSMAXXXXXXXXXXX 1216
            VIE  A GG+A+V+WRLETGRTHQIRAHAKYLGIPLLGDEVYGGTK+MA           
Sbjct: 311  VIEILAAGGSALVEWRLETGRTHQIRAHAKYLGIPLLGDEVYGGTKNMALSLLRPRIPSS 370

Query: 1217 XHGHLTNILSKLERPCLHAFSLGFKHPHTGEFLRFSCPPPEDFSEL 1354
             HG L  ++S+L+RPCLHA +LGF HP TG+ + FSC PPEDF+E+
Sbjct: 371  HHGQLAQLVSRLDRPCLHAVALGFNHPKTGKNVHFSCQPPEDFAEI 416


>ref|XP_004966473.1| PREDICTED: RNA pseudouridine synthase 2, chloroplastic-like [Setaria
            italica]
          Length = 437

 Score =  483 bits (1243), Expect = e-134
 Identities = 246/398 (61%), Positives = 294/398 (73%), Gaps = 2/398 (0%)
 Frame = +2

Query: 167  RCRVPRRALCCCNQSTGPESPPPPVVIRANHAGLRLEEKVEVGLQKTRIDSWISSRIRG- 343
            R R  R     C  S        P        G RLEE V  G  ++R+D+WIS+R+ G 
Sbjct: 22   RRRTVRPCYARCVSSNARAEAAEPERRSGGLTGTRLEEAVPAGEGRSRVDAWISARLGGG 81

Query: 344  -VSRARIQSSIKSGLVSVNGRTVNKASHVVKGGDMVYCMVSKLQPLRAEPEDIPLDIVYE 520
             VSRAR+Q+SI++GLV+VNGR V+K SH+VKGGD+V C VS+LQPLRAE EDIPLDIVYE
Sbjct: 82   GVSRARVQASIRAGLVAVNGRPVSKVSHMVKGGDLVSCTVSELQPLRAEAEDIPLDIVYE 141

Query: 521  DEHVLVVNKPAHMVVHPAPGNPNGTLVNAILHHCRLPTMACVKSNQAXXXXXXXXXXXXX 700
            D+HVLVVNKPAHMVVHPAPGN NGTLVNAILHHCR+ T  C+  N +             
Sbjct: 142  DDHVLVVNKPAHMVVHPAPGNANGTLVNAILHHCRISTFTCLARN-STGDECPDSSDDDV 200

Query: 701  XXLCTEQYTAEGIDLENCDALIRPGIVHRLDKGTSGLLVVAKDDHSHSHLAEQFKQHTIH 880
                 +Q+T E +  E  +AL+RPGIVHRLDKGTSGLLVVAKD+HSH+ LAEQFK HTI 
Sbjct: 201  DVFDVDQFTTEDVSSEVRNALVRPGIVHRLDKGTSGLLVVAKDEHSHAQLAEQFKLHTIR 260

Query: 881  RVYISLTSGIPNPSSGRIEVPIARDSNNRIRMAAVSGLNNSRHARYAASRYKVIEDFARG 1060
            RVYISLT G+P+P+SGRIE  IARD NNRIRM A++G +  R+AR+AASRYKV E FA G
Sbjct: 261  RVYISLTCGVPHPNSGRIEASIARDPNNRIRMIAIAG-SGQRYARHAASRYKVREVFAGG 319

Query: 1061 GAAMVQWRLETGRTHQIRAHAKYLGIPLLGDEVYGGTKSMAXXXXXXXXXXXXHGHLTNI 1240
            G+A+V+WRLETGRTHQIRAHAKYLGIPLLGDE YGGTKSMA            H  L+++
Sbjct: 320  GSALVEWRLETGRTHQIRAHAKYLGIPLLGDETYGGTKSMALSLLRPRTPSKYHSGLSDL 379

Query: 1241 LSKLERPCLHAFSLGFKHPHTGEFLRFSCPPPEDFSEL 1354
            +SK++RPCLHA  LGFKHPH+G+ L FSCPPP+DF+E+
Sbjct: 380  ISKVDRPCLHAALLGFKHPHSGKILEFSCPPPDDFTEV 417


>ref|XP_004143077.1| PREDICTED: RNA pseudourine synthase 2, chloroplastic-like [Cucumis
            sativus]
          Length = 453

 Score =  481 bits (1237), Expect = e-133
 Identities = 235/368 (63%), Positives = 283/368 (76%)
 Frame = +2

Query: 251  ANHAGLRLEEKVEVGLQKTRIDSWISSRIRGVSRARIQSSIKSGLVSVNGRTVNKASHVV 430
            AN+AG RLEE V+V   K R+DSWIS RI G+SRAR+QSSI++GLVSVNGR ++K SH V
Sbjct: 59   ANYAGTRLEETVDVNPGKVRLDSWISCRINGISRARVQSSIRAGLVSVNGRVIDKVSHNV 118

Query: 431  KGGDMVYCMVSKLQPLRAEPEDIPLDIVYEDEHVLVVNKPAHMVVHPAPGNPNGTLVNAI 610
            K GD++ C +S+LQPLRAEPEDI LDIVYEDEHVLVVNKPAHMVVHPAPGN  GTLVNAI
Sbjct: 119  KAGDVINCTISELQPLRAEPEDIDLDIVYEDEHVLVVNKPAHMVVHPAPGNATGTLVNAI 178

Query: 611  LHHCRLPTMACVKSNQAXXXXXXXXXXXXXXXLCTEQYTAEGIDLENCDALIRPGIVHRL 790
            L+HC LP +A                      +  +++++ G+     +A IRPGIVHRL
Sbjct: 179  LNHCSLPMVATSTGENESDSD-----------VSDDEFSSIGVFSRVSEAPIRPGIVHRL 227

Query: 791  DKGTSGLLVVAKDDHSHSHLAEQFKQHTIHRVYISLTSGIPNPSSGRIEVPIARDSNNRI 970
            DKGTSGLLVVAKD+HSH+HL+ QFKQH+I RVYISLT G+P  ++GRIE+PI RD NNRI
Sbjct: 228  DKGTSGLLVVAKDEHSHAHLSAQFKQHSIERVYISLTCGVPPSTAGRIEMPICRDPNNRI 287

Query: 971  RMAAVSGLNNSRHARYAASRYKVIEDFARGGAAMVQWRLETGRTHQIRAHAKYLGIPLLG 1150
            RM A+ G  N+ HA+YAASRY V+E  A+GG+++V+WRLETGRTHQIRAHAKY+GIPLLG
Sbjct: 288  RMTAIDGTKNNPHAKYAASRYNVMEILAQGGSSLVEWRLETGRTHQIRAHAKYMGIPLLG 347

Query: 1151 DEVYGGTKSMAXXXXXXXXXXXXHGHLTNILSKLERPCLHAFSLGFKHPHTGEFLRFSCP 1330
            DEVYGGTKSMA            HG L  ++S LERPCLHA +LGF HPHTG+ +RFSCP
Sbjct: 348  DEVYGGTKSMAMSLLRTRASSNCHGQLMQLVSSLERPCLHALTLGFVHPHTGKNIRFSCP 407

Query: 1331 PPEDFSEL 1354
            PP DF+E+
Sbjct: 408  PPTDFTEI 415


>ref|XP_006473714.1| PREDICTED: RNA pseudouridine synthase 2, chloroplastic-like [Citrus
            sinensis]
          Length = 421

 Score =  480 bits (1235), Expect = e-133
 Identities = 248/390 (63%), Positives = 292/390 (74%)
 Frame = +2

Query: 185  RALCCCNQSTGPESPPPPVVIRANHAGLRLEEKVEVGLQKTRIDSWISSRIRGVSRARIQ 364
            RA C  + S G    P      AN+AG++LEE V+    K R+D+WISSRI G+SRAR+Q
Sbjct: 36   RARCSSSSSGGNNREPI-----ANYAGVQLEETVDTKAGKLRLDAWISSRIDGISRARVQ 90

Query: 365  SSIKSGLVSVNGRTVNKASHVVKGGDMVYCMVSKLQPLRAEPEDIPLDIVYEDEHVLVVN 544
            SSI+SGLVS+NG+ V+K SH VKGGDMV C +S+LQPLRAE EDIPLDIVYED++VLVVN
Sbjct: 91   SSIRSGLVSINGQVVSKVSHNVKGGDMVNCTISELQPLRAEAEDIPLDIVYEDDNVLVVN 150

Query: 545  KPAHMVVHPAPGNPNGTLVNAILHHCRLPTMACVKSNQAXXXXXXXXXXXXXXXLCTEQY 724
            KPAHMVVHPAPGN  GTLVN ILHHC LPT+A   SNQ                +  ++ 
Sbjct: 151  KPAHMVVHPAPGNATGTLVNGILHHCSLPTLA--SSNQEAFSDAED--------ISDDEE 200

Query: 725  TAEGIDLENCDALIRPGIVHRLDKGTSGLLVVAKDDHSHSHLAEQFKQHTIHRVYISLTS 904
             +  I      A IRPGIVHRLDKGTSGLLVVAKD+HSH+HL+EQFK HTI RVYISLTS
Sbjct: 201  FSSSIS----GASIRPGIVHRLDKGTSGLLVVAKDEHSHAHLSEQFKLHTIERVYISLTS 256

Query: 905  GIPNPSSGRIEVPIARDSNNRIRMAAVSGLNNSRHARYAASRYKVIEDFARGGAAMVQWR 1084
            G+P+ SSGRIEVPI+RD NNRIRMAA+ G N    AR+AASRYKVIE  A GG+A+V+WR
Sbjct: 257  GVPSQSSGRIEVPISRDPNNRIRMAAIPGSNKHGQARHAASRYKVIEILAGGGSALVEWR 316

Query: 1085 LETGRTHQIRAHAKYLGIPLLGDEVYGGTKSMAXXXXXXXXXXXXHGHLTNILSKLERPC 1264
            LETGRTHQIRAHAKY+GIPLLGDEVYGGTK+MA            HG +  ++S L+RPC
Sbjct: 317  LETGRTHQIRAHAKYMGIPLLGDEVYGGTKNMAKSLLQPRTAPGSHGKVLKLVSGLQRPC 376

Query: 1265 LHAFSLGFKHPHTGEFLRFSCPPPEDFSEL 1354
            LHA +LGF HPHT E ++FSCPPP DF+E+
Sbjct: 377  LHAVALGFTHPHTREKIQFSCPPPADFAEI 406


>gb|ACG41877.1| RNA binding protein [Zea mays]
          Length = 439

 Score =  479 bits (1234), Expect = e-133
 Identities = 241/371 (64%), Positives = 286/371 (77%), Gaps = 2/371 (0%)
 Frame = +2

Query: 248  RANHAGLRLEEKVEVGLQKTRIDSWISSRIRG--VSRARIQSSIKSGLVSVNGRTVNKAS 421
            +  H G RLEE V VG  ++R+D+WIS+R+ G  VSRAR+Q+SI++GLV+VNGR V+K S
Sbjct: 51   KGGHGGTRLEEAVPVGEGRSRVDAWISARLGGGGVSRARVQASIRAGLVAVNGRPVSKVS 110

Query: 422  HVVKGGDMVYCMVSKLQPLRAEPEDIPLDIVYEDEHVLVVNKPAHMVVHPAPGNPNGTLV 601
            H VKGGD+V C VS+LQPLRAE EDIPLDIVYED+HVLVVNKPAHMVVHPAPGN  GTLV
Sbjct: 111  HTVKGGDLVSCTVSELQPLRAEAEDIPLDIVYEDDHVLVVNKPAHMVVHPAPGNAKGTLV 170

Query: 602  NAILHHCRLPTMACVKSNQAXXXXXXXXXXXXXXXLCTEQYTAEGIDLENCDALIRPGIV 781
            NAILHHC++ T  C+  + A                  +Q+ AE +  E  +AL+RPGIV
Sbjct: 171  NAILHHCKISTFTCLARSSA-GDECPDSSDEDTDVFHVDQFAAEDVSSEVRNALVRPGIV 229

Query: 782  HRLDKGTSGLLVVAKDDHSHSHLAEQFKQHTIHRVYISLTSGIPNPSSGRIEVPIARDSN 961
            HRLDKGTSGLLVVAKD+HSH+ LAEQFK HTI RVYISLT G PNP+SGRIE  IARD N
Sbjct: 230  HRLDKGTSGLLVVAKDEHSHARLAEQFKLHTIRRVYISLTCGAPNPNSGRIEASIARDPN 289

Query: 962  NRIRMAAVSGLNNSRHARYAASRYKVIEDFARGGAAMVQWRLETGRTHQIRAHAKYLGIP 1141
            NRIRM A++G +  R+AR AASRYKV E FA GG+A+V+WRLETGRTHQIRAHAKY+GIP
Sbjct: 290  NRIRMTAIAG-SGHRYARNAASRYKVREVFAGGGSALVEWRLETGRTHQIRAHAKYIGIP 348

Query: 1142 LLGDEVYGGTKSMAXXXXXXXXXXXXHGHLTNILSKLERPCLHAFSLGFKHPHTGEFLRF 1321
            LLGDE YGGT+SMA            H  L+N+LSK++RPCLHA SLGFKHP +G+ L F
Sbjct: 349  LLGDETYGGTQSMALSLLRPRSPSKYHSGLSNLLSKVDRPCLHAASLGFKHPRSGKVLEF 408

Query: 1322 SCPPPEDFSEL 1354
            SCPPP+DF E+
Sbjct: 409  SCPPPDDFLEV 419


>ref|XP_003563280.1| PREDICTED: RNA pseudourine synthase 2, chloroplastic-like
            [Brachypodium distachyon]
          Length = 439

 Score =  479 bits (1233), Expect = e-132
 Identities = 242/388 (62%), Positives = 291/388 (75%), Gaps = 2/388 (0%)
 Frame = +2

Query: 197  CCNQSTGPESPPPPVVIRANHAGLRLEEKVEVGLQKTRIDSWISSRIRG--VSRARIQSS 370
            C +     E+ P P   R  HAG RLEE V  G  ++R+D+WIS+R+ G  VSRAR+Q+S
Sbjct: 33   CLSADANVEALPAPSR-RGGHAGTRLEEAVPAGEGRSRVDAWISARLGGGGVSRARVQAS 91

Query: 371  IKSGLVSVNGRTVNKASHVVKGGDMVYCMVSKLQPLRAEPEDIPLDIVYEDEHVLVVNKP 550
            I++GLV+VNGR V+K S  VKGGD V C VS+LQPLRAE EDIPLDIVYEDEH+LVVNKP
Sbjct: 92   IRAGLVAVNGRPVSKVSQTVKGGDTVSCTVSELQPLRAEAEDIPLDIVYEDEHLLVVNKP 151

Query: 551  AHMVVHPAPGNPNGTLVNAILHHCRLPTMACVKSNQAXXXXXXXXXXXXXXXLCTEQYTA 730
            AHMVVHPAPGN NGTLVNAILHHC++ T  C+  N +                  +Q+  
Sbjct: 152  AHMVVHPAPGNANGTLVNAILHHCKISTFTCLARN-SIDDECPESSDDDIDVFDVDQFNG 210

Query: 731  EGIDLENCDALIRPGIVHRLDKGTSGLLVVAKDDHSHSHLAEQFKQHTIHRVYISLTSGI 910
            E +  E  DA++RPGIVHRLDKGTSGLLVVAKD+HSH+ LAEQFK HTI R+YISLT G+
Sbjct: 211  E-VSSEVRDAIVRPGIVHRLDKGTSGLLVVAKDEHSHAQLAEQFKLHTIRRIYISLTCGV 269

Query: 911  PNPSSGRIEVPIARDSNNRIRMAAVSGLNNSRHARYAASRYKVIEDFARGGAAMVQWRLE 1090
            PNP+S RIEVPI+RD NNRIRM A  G +  R+AR+AASRYKV E F  GG+A+V+W+LE
Sbjct: 270  PNPNSARIEVPISRDPNNRIRMIAAPG-SGHRYARHAASRYKVREVFCSGGSALVEWKLE 328

Query: 1091 TGRTHQIRAHAKYLGIPLLGDEVYGGTKSMAXXXXXXXXXXXXHGHLTNILSKLERPCLH 1270
            TGRTHQIRAHAKYLG PLLGDE YGG+KSMA            HG L+N++SK++RPCLH
Sbjct: 329  TGRTHQIRAHAKYLGYPLLGDETYGGSKSMALSLLRPRTPSRYHGDLSNLISKIDRPCLH 388

Query: 1271 AFSLGFKHPHTGEFLRFSCPPPEDFSEL 1354
            A  LGFKHPH+G+ L FSCPPP+DF+E+
Sbjct: 389  AALLGFKHPHSGKMLEFSCPPPDDFAEV 416


>ref|XP_004161095.1| PREDICTED: LOW QUALITY PROTEIN: RNA pseudourine synthase 2,
            chloroplastic-like [Cucumis sativus]
          Length = 452

 Score =  478 bits (1231), Expect = e-132
 Identities = 236/368 (64%), Positives = 283/368 (76%)
 Frame = +2

Query: 251  ANHAGLRLEEKVEVGLQKTRIDSWISSRIRGVSRARIQSSIKSGLVSVNGRTVNKASHVV 430
            AN+AG RLEE V+V   K R+DSWIS RI G+SRAR+QSSI++GLVSVNGR ++K SH V
Sbjct: 59   ANYAGTRLEETVDVNPGKVRLDSWISCRINGISRARVQSSIRAGLVSVNGRVIDKVSHNV 118

Query: 431  KGGDMVYCMVSKLQPLRAEPEDIPLDIVYEDEHVLVVNKPAHMVVHPAPGNPNGTLVNAI 610
            K GD++ C +S+LQPLRAEPEDI LDIVYEDEHVLVVNKPAHMVVHPAPGN  GTLVNAI
Sbjct: 119  KAGDVINCTISELQPLRAEPEDIDLDIVYEDEHVLVVNKPAHMVVHPAPGNATGTLVNAI 178

Query: 611  LHHCRLPTMACVKSNQAXXXXXXXXXXXXXXXLCTEQYTAEGIDLENCDALIRPGIVHRL 790
            L+HC LP +A                      +  +++++ G+     +A IRPGIVHRL
Sbjct: 179  LNHCSLPMVATSTGEN-----------ESDSDVSDDEFSSIGVFSRVSEAPIRPGIVHRL 227

Query: 791  DKGTSGLLVVAKDDHSHSHLAEQFKQHTIHRVYISLTSGIPNPSSGRIEVPIARDSNNRI 970
            DKGTSGLLVVAKD+HSH+HL+ QFKQH+I RVYISLT G+P  ++GRIE+PI RD NNRI
Sbjct: 228  DKGTSGLLVVAKDEHSHAHLSAQFKQHSIERVYISLTCGVPPSTAGRIEMPICRDPNNRI 287

Query: 971  RMAAVSGLNNSRHARYAASRYKVIEDFARGGAAMVQWRLETGRTHQIRAHAKYLGIPLLG 1150
            RM A+ G NN  HA+YAASRY V+E  A+GG+++V+WRLETGRTHQIRAHAKY+GIPLLG
Sbjct: 288  RMTAIDGTNNP-HAKYAASRYNVMEILAQGGSSLVEWRLETGRTHQIRAHAKYMGIPLLG 346

Query: 1151 DEVYGGTKSMAXXXXXXXXXXXXHGHLTNILSKLERPCLHAFSLGFKHPHTGEFLRFSCP 1330
            DEVYGGTKSMA            HG L  ++S LERPCLHA +LGF HPHTG+ +RFSCP
Sbjct: 347  DEVYGGTKSMAMSLLRTRASSNCHGQLMQLVSSLERPCLHALTLGFVHPHTGKNIRFSCP 406

Query: 1331 PPEDFSEL 1354
            PP DF+E+
Sbjct: 407  PPTDFTEI 414


>ref|NP_974151.1| RNA pseudourine synthase 2 [Arabidopsis thaliana]
            gi|122215273|sp|Q3ECD0.1|PUS2_ARATH RecName: Full=RNA
            pseudouridine synthase 2, chloroplastic; AltName:
            Full=RNA pseudouridylate synthase 2; AltName:
            Full=RNA-uridine isomerase 2; Flags: Precursor
            gi|332197669|gb|AEE35790.1| RNA pseudourine synthase 2
            [Arabidopsis thaliana]
          Length = 430

 Score =  469 bits (1208), Expect = e-129
 Identities = 233/377 (61%), Positives = 276/377 (73%)
 Frame = +2

Query: 224  SPPPPVVIRANHAGLRLEEKVEVGLQKTRIDSWISSRIRGVSRARIQSSIKSGLVSVNGR 403
            SP   ++ R N+AGLR+EE V+    K R+DSWISSRI GVSRAR+QSSI+ GLV+VNGR
Sbjct: 55   SPTEIIIPRVNNAGLRIEEIVDAAKGKIRLDSWISSRINGVSRARVQSSIRLGLVTVNGR 114

Query: 404  TVNKASHVVKGGDMVYCMVSKLQPLRAEPEDIPLDIVYEDEHVLVVNKPAHMVVHPAPGN 583
             V+K SH VK GD V C +S+LQPL+AE EDIPLDIVYED+HVLVVNKPAHMVVHPAPGN
Sbjct: 115  VVDKVSHNVKSGDEVNCTISELQPLKAEAEDIPLDIVYEDKHVLVVNKPAHMVVHPAPGN 174

Query: 584  PNGTLVNAILHHCRLPTMACVKSNQAXXXXXXXXXXXXXXXLCTEQYTAEGIDLENCDAL 763
            P GTLVN ILHHC LP +    S +                     Y A           
Sbjct: 175  PTGTLVNGILHHCSLPCVDYSNSEEDDDSDEETFSDDEEMTTSPSSYAAS---------- 224

Query: 764  IRPGIVHRLDKGTSGLLVVAKDDHSHSHLAEQFKQHTIHRVYISLTSGIPNPSSGRIEVP 943
            +RPGIVHRLDKGT+GLLVVAKD+HSH+HLAEQFK HTI RVY+SLT+G+P+P  GRIE+P
Sbjct: 225  VRPGIVHRLDKGTTGLLVVAKDEHSHAHLAEQFKLHTIERVYVSLTTGVPSPPQGRIEIP 284

Query: 944  IARDSNNRIRMAAVSGLNNSRHARYAASRYKVIEDFARGGAAMVQWRLETGRTHQIRAHA 1123
            I RDS+NRIRMAA+ G      AR+AASRYKVIE FA GG+A+V+WRLETGRTHQIRAHA
Sbjct: 285  IGRDSSNRIRMAAIPGGVRGGRARHAASRYKVIETFAGGGSALVEWRLETGRTHQIRAHA 344

Query: 1124 KYLGIPLLGDEVYGGTKSMAXXXXXXXXXXXXHGHLTNILSKLERPCLHAFSLGFKHPHT 1303
            KY+G+PLLGDEVYGGTKSMA               +  ++S+++RPCLHA  LGF HP T
Sbjct: 345  KYMGVPLLGDEVYGGTKSMALSLLQKRVSRSDQEEIIELISRMDRPCLHAIVLGFTHPCT 404

Query: 1304 GEFLRFSCPPPEDFSEL 1354
            GE ++FSCPPP D +E+
Sbjct: 405  GEIVKFSCPPPSDLAEI 421


>ref|XP_006390244.1| hypothetical protein EUTSA_v10018588mg [Eutrema salsugineum]
            gi|557086678|gb|ESQ27530.1| hypothetical protein
            EUTSA_v10018588mg [Eutrema salsugineum]
          Length = 432

 Score =  468 bits (1205), Expect = e-129
 Identities = 240/394 (60%), Positives = 288/394 (73%), Gaps = 1/394 (0%)
 Frame = +2

Query: 176  VPRRALCCCNQSTGPESPPPPVVIRANHAGLRLEEKVEVGLQ-KTRIDSWISSRIRGVSR 352
            +P  A C     + PES P     R N+AGL+LEE VE  ++ K R+DSWISSR+ GVSR
Sbjct: 49   IPNLAAC-----SKPESIP-----RVNNAGLKLEETVEAAVKAKIRLDSWISSRVHGVSR 98

Query: 353  ARIQSSIKSGLVSVNGRTVNKASHVVKGGDMVYCMVSKLQPLRAEPEDIPLDIVYEDEHV 532
            AR+QSSI+ GLVSVNGR V+K SH VK GD V C +S+LQPL+AEPEDIPLDIVYED+H+
Sbjct: 99   ARVQSSIRLGLVSVNGRVVDKVSHNVKAGDEVNCTISELQPLKAEPEDIPLDIVYEDKHL 158

Query: 533  LVVNKPAHMVVHPAPGNPNGTLVNAILHHCRLPTMACVKSNQAXXXXXXXXXXXXXXXLC 712
            LVVNKPAHMVVHPAPGNP GTLVN ILHHC LP +A                        
Sbjct: 159  LVVNKPAHMVVHPAPGNPTGTLVNGILHHCSLPCVAYSNPEDDSDEETLSDD-------- 210

Query: 713  TEQYTAEGIDLENCDALIRPGIVHRLDKGTSGLLVVAKDDHSHSHLAEQFKQHTIHRVYI 892
             E+ T+      +  A +RPGIVHRLDKGTSGLLVVAKD+HSH+HLAEQFK HTI RVYI
Sbjct: 211  -EEMTSSS----SLAASVRPGIVHRLDKGTSGLLVVAKDEHSHAHLAEQFKLHTIERVYI 265

Query: 893  SLTSGIPNPSSGRIEVPIARDSNNRIRMAAVSGLNNSRHARYAASRYKVIEDFARGGAAM 1072
            SLTSG+P+PS GR+++PI RD NNRIRMAA+ G  +   AR+AASRYKVIE  A GG+A+
Sbjct: 266  SLTSGVPSPSQGRVDIPIGRDPNNRIRMAAIPGSLSRGKARHAASRYKVIETLAGGGSAL 325

Query: 1073 VQWRLETGRTHQIRAHAKYLGIPLLGDEVYGGTKSMAXXXXXXXXXXXXHGHLTNILSKL 1252
            V+WRLETGRTHQIRAHAKY+G+PLLGDEVYGGTKS+A               +  ++S++
Sbjct: 326  VEWRLETGRTHQIRAHAKYMGVPLLGDEVYGGTKSVALSLLQRRVSRSDQEQILELVSRM 385

Query: 1253 ERPCLHAFSLGFKHPHTGEFLRFSCPPPEDFSEL 1354
            +RPCLHA  LGF+HP TGE ++FSCPPP D +E+
Sbjct: 386  DRPCLHAIVLGFEHPCTGEVVKFSCPPPSDLAEI 419


>ref|XP_006302277.1| hypothetical protein CARUB_v10020321mg [Capsella rubella]
            gi|482570987|gb|EOA35175.1| hypothetical protein
            CARUB_v10020321mg [Capsella rubella]
          Length = 432

 Score =  466 bits (1198), Expect = e-128
 Identities = 234/377 (62%), Positives = 280/377 (74%)
 Frame = +2

Query: 224  SPPPPVVIRANHAGLRLEEKVEVGLQKTRIDSWISSRIRGVSRARIQSSIKSGLVSVNGR 403
            SP   ++ R N+AGLR+EE V+    K R+DSWISSRI GVSRAR+QSSI+ GLV+VNGR
Sbjct: 55   SPTESILPRVNNAGLRIEETVDDLKGKIRLDSWISSRINGVSRARVQSSIRLGLVTVNGR 114

Query: 404  TVNKASHVVKGGDMVYCMVSKLQPLRAEPEDIPLDIVYEDEHVLVVNKPAHMVVHPAPGN 583
             V+K SH VK GD V C +S+LQPL+AE EDIPLDIVYED+HVLVVNKPAHMVVHPAPGN
Sbjct: 115  VVDKVSHNVKAGDEVNCTISELQPLKAEAEDIPLDIVYEDKHVLVVNKPAHMVVHPAPGN 174

Query: 584  PNGTLVNAILHHCRLPTMACVKSNQAXXXXXXXXXXXXXXXLCTEQYTAEGIDLENCDAL 763
            P GTLVN ILHHC LP++A   S+                   +  Y A           
Sbjct: 175  PTGTLVNGILHHCSLPSVA--YSSPEDDDSDDESFSDGEEMTSSSSYAAS---------- 222

Query: 764  IRPGIVHRLDKGTSGLLVVAKDDHSHSHLAEQFKQHTIHRVYISLTSGIPNPSSGRIEVP 943
            +RPGIVHRLDKGT+GLLVVAKD+HSH+HLAEQFK HTI RVY+SLT+G+P+P  GRIE+P
Sbjct: 223  VRPGIVHRLDKGTTGLLVVAKDEHSHAHLAEQFKLHTIERVYVSLTTGVPSPPQGRIEIP 282

Query: 944  IARDSNNRIRMAAVSGLNNSRHARYAASRYKVIEDFARGGAAMVQWRLETGRTHQIRAHA 1123
            I RDS+NRIRMAA+ G  +S  AR+AASRYKVIE  A GG+A+V+WRLETGRTHQIRAHA
Sbjct: 283  IGRDSSNRIRMAAIPGGLSSGRARHAASRYKVIETLAGGGSALVEWRLETGRTHQIRAHA 342

Query: 1124 KYLGIPLLGDEVYGGTKSMAXXXXXXXXXXXXHGHLTNILSKLERPCLHAFSLGFKHPHT 1303
            KY+G+PLLGDEVYGGTKSMA               +  ++S+L+RPCLHA  LGF HP T
Sbjct: 343  KYMGVPLLGDEVYGGTKSMALSLLQKRVCRSDQDEIIELISRLDRPCLHAIVLGFTHPCT 402

Query: 1304 GEFLRFSCPPPEDFSEL 1354
            G+ ++FSCPPP D +E+
Sbjct: 403  GKIVKFSCPPPPDLAEI 419


>gb|EOY15125.1| Pseudouridine synthase family protein isoform 1 [Theobroma cacao]
          Length = 433

 Score =  465 bits (1196), Expect = e-128
 Identities = 235/371 (63%), Positives = 281/371 (75%), Gaps = 1/371 (0%)
 Frame = +2

Query: 245  IRANHAGLRLEEKVEVGLQ-KTRIDSWISSRIRGVSRARIQSSIKSGLVSVNGRTVNKAS 421
            IR ++ G++LEE V+   Q K R+DSWISSRI+G+SRAR+QSSIKSGLV+VNGR V+K S
Sbjct: 59   IRTSYTGVQLEETVDGTKQGKLRLDSWISSRIQGISRARVQSSIKSGLVTVNGRVVDKVS 118

Query: 422  HVVKGGDMVYCMVSKLQPLRAEPEDIPLDIVYEDEHVLVVNKPAHMVVHPAPGNPNGTLV 601
            H ++ GD V C++S+LQPLRAEPEDIPLDIVYED+HVLVVNKP HMVVHPAPGN  GTLV
Sbjct: 119  HGLRHGDKVNCVISELQPLRAEPEDIPLDIVYEDDHVLVVNKPPHMVVHPAPGNATGTLV 178

Query: 602  NAILHHCRLPTMACVKSNQAXXXXXXXXXXXXXXXLCTEQYTAEGIDLENCDALIRPGIV 781
            N ILHHC LPT+A    ++                 C     A         A +RPGIV
Sbjct: 179  NGILHHCSLPTVAL---SEKEVLSDTEDVSDDDEGFCYGASAA---------ASVRPGIV 226

Query: 782  HRLDKGTSGLLVVAKDDHSHSHLAEQFKQHTIHRVYISLTSGIPNPSSGRIEVPIARDSN 961
            HRLDKGTSGLLVVAKD+HSHSHL+EQFKQHTI RVYISLT G+P+PS+GR+++ I RDSN
Sbjct: 227  HRLDKGTSGLLVVAKDEHSHSHLSEQFKQHTIQRVYISLTCGVPSPSAGRVDISIGRDSN 286

Query: 962  NRIRMAAVSGLNNSRHARYAASRYKVIEDFARGGAAMVQWRLETGRTHQIRAHAKYLGIP 1141
            NR+RM AV GLN+   AR+AASRYKVIE  A GG+A++QWRLETGRTHQIRAHAKY+GIP
Sbjct: 287  NRVRMIAVPGLNHHGRARHAASRYKVIEVLAGGGSALIQWRLETGRTHQIRAHAKYMGIP 346

Query: 1142 LLGDEVYGGTKSMAXXXXXXXXXXXXHGHLTNILSKLERPCLHAFSLGFKHPHTGEFLRF 1321
            LLGDEVYGGTKSMA            +  L+ ++S+LERP LHA  LGF+HPH+ E + F
Sbjct: 347  LLGDEVYGGTKSMALSLLRPRTPPNYNDQLSRLVSRLERPYLHALVLGFEHPHSREMMHF 406

Query: 1322 SCPPPEDFSEL 1354
            SC PP DF+E+
Sbjct: 407  SCQPPPDFAEI 417


>ref|XP_006828851.1| hypothetical protein AMTR_s00001p00157430 [Amborella trichopoda]
            gi|548833830|gb|ERM96267.1| hypothetical protein
            AMTR_s00001p00157430 [Amborella trichopoda]
          Length = 452

 Score =  462 bits (1190), Expect = e-127
 Identities = 233/368 (63%), Positives = 270/368 (73%), Gaps = 2/368 (0%)
 Frame = +2

Query: 257  HAGLRLEEKVEVGLQKTRIDSWISSRIRGVSRARIQSSIKSGLVSVNGRTVNKASHVVKG 436
            + GL+ E  V VG +K RIDSW+S+RI  VSRARIQSSI+ G V VNG  + K SH+VK 
Sbjct: 67   YGGLQFESSVAVGSKKERIDSWLSARIGDVSRARIQSSIRQGFVKVNGLPITKVSHIVKV 126

Query: 437  GDMVYCMVSKLQPLRAEPEDIPLDIVYEDEHVLVVNKPAHMVVHPAPGNPNGTLVNAILH 616
            GDMV C VS LQPL+AEPED+PLDI+YED+HVLVVNKPAHMVVHPAPGN NGTLVN ILH
Sbjct: 127  GDMVDCTVSHLQPLKAEPEDMPLDIIYEDDHVLVVNKPAHMVVHPAPGNANGTLVNGILH 186

Query: 617  HCRLPTMACVKSNQAXXXXXXXXXXXXXXXLCTEQYTAEGID--LENCDALIRPGIVHRL 790
            HC LP                          C    T    D     C + IRPGIVHRL
Sbjct: 187  HCTLPAFGLPDGELTSESDDE----------CDNGLTMFNPDPISTQCRSSIRPGIVHRL 236

Query: 791  DKGTSGLLVVAKDDHSHSHLAEQFKQHTIHRVYISLTSGIPNPSSGRIEVPIARDSNNRI 970
            DKGTSGLLVVAK++HSH+HL+EQFK HTIHR YISLT G+P+PS+G IE+PIARD NNRI
Sbjct: 237  DKGTSGLLVVAKNEHSHAHLSEQFKLHTIHRQYISLTCGVPSPSNGCIEIPIARDMNNRI 296

Query: 971  RMAAVSGLNNSRHARYAASRYKVIEDFARGGAAMVQWRLETGRTHQIRAHAKYLGIPLLG 1150
            RMAAVSG NN+R AR A SRY V+E  A GG+A+V+WRL+TGRTHQIR HAKY+G PLLG
Sbjct: 297  RMAAVSGQNNTRKARLATSRYHVMEVLAGGGSALVEWRLQTGRTHQIRVHAKYIGNPLLG 356

Query: 1151 DEVYGGTKSMAXXXXXXXXXXXXHGHLTNILSKLERPCLHAFSLGFKHPHTGEFLRFSCP 1330
            DEVYGGTKSMA            HG L+ ++S L+RPCLHAFSLGFKHPH+ E + F+CP
Sbjct: 357  DEVYGGTKSMALSRLRPRTPSHYHGPLSQLVSNLQRPCLHAFSLGFKHPHSKENVLFTCP 416

Query: 1331 PPEDFSEL 1354
            PP DF+E+
Sbjct: 417  PPPDFAEV 424


>ref|XP_002301949.1| pseudouridine synthase family protein [Populus trichocarpa]
            gi|222843675|gb|EEE81222.1| pseudouridine synthase family
            protein [Populus trichocarpa]
          Length = 444

 Score =  462 bits (1189), Expect = e-127
 Identities = 235/369 (63%), Positives = 279/369 (75%)
 Frame = +2

Query: 248  RANHAGLRLEEKVEVGLQKTRIDSWISSRIRGVSRARIQSSIKSGLVSVNGRTVNKASHV 427
            R N++G++LEE V+    K+R+DSWISSRI G+SRAR+QSSIKSGLVSVNG+ ++K SH 
Sbjct: 75   RINYSGVKLEESVDSKSGKSRLDSWISSRISGISRARVQSSIKSGLVSVNGKVIDKVSHN 134

Query: 428  VKGGDMVYCMVSKLQPLRAEPEDIPLDIVYEDEHVLVVNKPAHMVVHPAPGNPNGTLVNA 607
            VK GD V C++S+LQPLRAEPE+IPLDIVYEDE+VLVVNKPAHMVVHPAPGN  GTLVN 
Sbjct: 135  VKAGDKVNCVISELQPLRAEPENIPLDIVYEDENVLVVNKPAHMVVHPAPGNATGTLVNG 194

Query: 608  ILHHCRLPTMACVKSNQAXXXXXXXXXXXXXXXLCTEQYTAEGIDLENCDALIRPGIVHR 787
            ILHHC LPT+    S+Q                LC+  Y A           +RPGIVHR
Sbjct: 195  ILHHCSLPTV----SSQEVLSGAEDVSDDDDEGLCSSSYAAS----------VRPGIVHR 240

Query: 788  LDKGTSGLLVVAKDDHSHSHLAEQFKQHTIHRVYISLTSGIPNPSSGRIEVPIARDSNNR 967
            LDKGTSGLLVVAKD+HSH+HL+EQFK HTI RVY+SLT G+P P +GRI+VPI RD +NR
Sbjct: 241  LDKGTSGLLVVAKDEHSHAHLSEQFKLHTIKRVYVSLTCGVPAPMAGRIDVPIGRDVSNR 300

Query: 968  IRMAAVSGLNNSRHARYAASRYKVIEDFARGGAAMVQWRLETGRTHQIRAHAKYLGIPLL 1147
            IRMAA+   N  + AR+AASRYKVIE  A GG+A+V+WRLETGRTHQIRAHAKY+GIPLL
Sbjct: 301  IRMAAIVEPNRGQ-ARHAASRYKVIEILAGGGSALVEWRLETGRTHQIRAHAKYIGIPLL 359

Query: 1148 GDEVYGGTKSMAXXXXXXXXXXXXHGHLTNILSKLERPCLHAFSLGFKHPHTGEFLRFSC 1327
            GDEVYGGT++MA            H  L+  LS LERPCLHA +LGF HP TG+ + FSC
Sbjct: 360  GDEVYGGTQNMALSLLRSRTQPSCHRQLSLSLSGLERPCLHALALGFTHPCTGKEIHFSC 419

Query: 1328 PPPEDFSEL 1354
            PPP DF+E+
Sbjct: 420  PPPPDFTEI 428


>gb|ESW08114.1| hypothetical protein PHAVU_009G019500g [Phaseolus vulgaris]
          Length = 447

 Score =  458 bits (1178), Expect = e-126
 Identities = 230/371 (61%), Positives = 273/371 (73%), Gaps = 2/371 (0%)
 Frame = +2

Query: 248  RANHAGLRLEEKVE--VGLQKTRIDSWISSRIRGVSRARIQSSIKSGLVSVNGRTVNKAS 421
            + N +GLRLEE V+  +G  K R+DSWISSRI G+SRAR+QSSIKSGLV VNGR V+KAS
Sbjct: 60   KLNFSGLRLEEAVDSRIGSAKLRLDSWISSRINGISRARVQSSIKSGLVHVNGRVVDKAS 119

Query: 422  HVVKGGDMVYCMVSKLQPLRAEPEDIPLDIVYEDEHVLVVNKPAHMVVHPAPGNPNGTLV 601
              VK GD + C +++LQ LRA PE+IPLDIVYEDEHVLV+NKPAHMVVHPAPGN +GTLV
Sbjct: 120  FNVKAGDQIKCTIAELQKLRAVPENIPLDIVYEDEHVLVINKPAHMVVHPAPGNTSGTLV 179

Query: 602  NAILHHCRLPTMACVKSNQAXXXXXXXXXXXXXXXLCTEQYTAEGIDLENCDALIRPGIV 781
            N ILHHC LP +   K                   L +   + EG       + IRPGIV
Sbjct: 180  NGILHHCNLPNVEFSKEEGLSDTEDCDDEVNSYGSLAS---SCEGSHSRPSMSSIRPGIV 236

Query: 782  HRLDKGTSGLLVVAKDDHSHSHLAEQFKQHTIHRVYISLTSGIPNPSSGRIEVPIARDSN 961
            HRLDKGTSGLLVVAKD+HSH  L+EQFKQ TI RVY+SLT+G+P P SGR++VP+ RD N
Sbjct: 237  HRLDKGTSGLLVVAKDEHSHMKLSEQFKQRTIKRVYVSLTAGVPRPISGRVDVPVGRDLN 296

Query: 962  NRIRMAAVSGLNNSRHARYAASRYKVIEDFARGGAAMVQWRLETGRTHQIRAHAKYLGIP 1141
            NR+RM AV+G  NSR AR+AASRYKVIE  A G  ++V+W+LETGRTHQIRAHAKYLG+P
Sbjct: 297  NRLRMTAVAGPVNSRKARHAASRYKVIEILAGGSCSLVEWKLETGRTHQIRAHAKYLGVP 356

Query: 1142 LLGDEVYGGTKSMAXXXXXXXXXXXXHGHLTNILSKLERPCLHAFSLGFKHPHTGEFLRF 1321
            LLGDEVYGGTKSM             HG +  ++S L+RPCLHA +LGF+HPHTGE + F
Sbjct: 357  LLGDEVYGGTKSMVLSLLRPRSPISLHGKIVQMVSSLDRPCLHALTLGFQHPHTGEQVHF 416

Query: 1322 SCPPPEDFSEL 1354
            SC PP DF E+
Sbjct: 417  SCEPPVDFDEI 427


>gb|AAF26765.1|AC007396_14 T4O12.25 [Arabidopsis thaliana]
          Length = 980

 Score =  455 bits (1171), Expect = e-125
 Identities = 233/403 (57%), Positives = 276/403 (68%), Gaps = 26/403 (6%)
 Frame = +2

Query: 224  SPPPPVVIRANHAGLRLEEKVEVGLQKTRIDSWISSRIRGVSRARIQSSIKSGLVSVNGR 403
            SP   ++ R N+AGLR+EE V+    K R+DSWISSRI GVSRAR+QSSI+ GLV+VNGR
Sbjct: 579  SPTEIIIPRVNNAGLRIEEIVDAAKGKIRLDSWISSRINGVSRARVQSSIRLGLVTVNGR 638

Query: 404  TVNKA--------------------------SHVVKGGDMVYCMVSKLQPLRAEPEDIPL 505
             V+K                           SH VK GD V C +S+LQPL+AE EDIPL
Sbjct: 639  VVDKVLTSKFDSSKKFQFCNQVSISLTLFQVSHNVKSGDEVNCTISELQPLKAEAEDIPL 698

Query: 506  DIVYEDEHVLVVNKPAHMVVHPAPGNPNGTLVNAILHHCRLPTMACVKSNQAXXXXXXXX 685
            DIVYED+HVLVVNKPAHMVVHPAPGNP GTLVN ILHHC LP +    S +         
Sbjct: 699  DIVYEDKHVLVVNKPAHMVVHPAPGNPTGTLVNGILHHCSLPCVDYSNSEEDDDSDEETF 758

Query: 686  XXXXXXXLCTEQYTAEGIDLENCDALIRPGIVHRLDKGTSGLLVVAKDDHSHSHLAEQFK 865
                        Y A           +RPGIVHRLDKGT+GLLVVAKD+HSH+HLAEQFK
Sbjct: 759  SDDEEMTTSPSSYAAS----------VRPGIVHRLDKGTTGLLVVAKDEHSHAHLAEQFK 808

Query: 866  QHTIHRVYISLTSGIPNPSSGRIEVPIARDSNNRIRMAAVSGLNNSRHARYAASRYKVIE 1045
             HTI RVY+SLT+G+P+P  GRIE+PI RDS+NRIRMAA+ G      AR+AASRYKVIE
Sbjct: 809  LHTIERVYVSLTTGVPSPPQGRIEIPIGRDSSNRIRMAAIPGGVRGGRARHAASRYKVIE 868

Query: 1046 DFARGGAAMVQWRLETGRTHQIRAHAKYLGIPLLGDEVYGGTKSMAXXXXXXXXXXXXHG 1225
             FA GG+A+V+WRLETGRTHQIRAHAKY+G+PLLGDEVYGGTKSMA              
Sbjct: 869  TFAGGGSALVEWRLETGRTHQIRAHAKYMGVPLLGDEVYGGTKSMALSLLQKRVSRSDQE 928

Query: 1226 HLTNILSKLERPCLHAFSLGFKHPHTGEFLRFSCPPPEDFSEL 1354
             +  ++S+++RPCLHA  LGF HP TGE ++FSCPPP D +E+
Sbjct: 929  EIIELISRMDRPCLHAIVLGFTHPCTGEIVKFSCPPPSDLAEI 971


>ref|XP_003523282.1| PREDICTED: RNA pseudouridine synthase 2, chloroplastic-like isoform
            X1 [Glycine max] gi|571448797|ref|XP_006577958.1|
            PREDICTED: RNA pseudouridine synthase 2,
            chloroplastic-like isoform X2 [Glycine max]
          Length = 450

 Score =  451 bits (1161), Expect = e-124
 Identities = 225/373 (60%), Positives = 277/373 (74%), Gaps = 4/373 (1%)
 Frame = +2

Query: 248  RANHAGLRLEEKVE--VGLQKTRIDSWISSRIRGVSRARIQSSIKSGLVSVNGRTVNKAS 421
            + N +G+RLEE V+  +G  K R+D+WISSRI G+SRAR+QSSIKSGLV VNGR V+K S
Sbjct: 61   KLNFSGVRLEEAVDSRIGSGKLRLDNWISSRINGISRARVQSSIKSGLVHVNGRVVDKVS 120

Query: 422  HVVKGGDMVYCMVSKLQPLRAEPEDIPLDIVYEDEHVLVVNKPAHMVVHPAPGNPNGTLV 601
              VK GD + C +++LQ LRA P++IPLDIVYEDEHVLV+NKPAHMVVHPAPGN +GTLV
Sbjct: 121  FNVKSGDEIKCTIAELQNLRAVPQNIPLDIVYEDEHVLVINKPAHMVVHPAPGNTSGTLV 180

Query: 602  NAILHHCRLPTMACVKSNQAXXXXXXXXXXXXXXXLCTEQYTAEGID--LENCDALIRPG 775
            N ILHHC LP +   K                   L +   + EG++  L      IRPG
Sbjct: 181  NGILHHCNLPNVEFSKDEALSDTEDSDDEFNSYISLAS---SCEGLNSRLSVASNSIRPG 237

Query: 776  IVHRLDKGTSGLLVVAKDDHSHSHLAEQFKQHTIHRVYISLTSGIPNPSSGRIEVPIARD 955
            IVHRLDKGTSGLLVVAKD+HSH  L+EQFKQ TI R+Y+SLT+G+P P +GR+EVP+ RD
Sbjct: 238  IVHRLDKGTSGLLVVAKDEHSHMKLSEQFKQRTIKRLYVSLTAGVPTPVAGRVEVPVGRD 297

Query: 956  SNNRIRMAAVSGLNNSRHARYAASRYKVIEDFARGGAAMVQWRLETGRTHQIRAHAKYLG 1135
            +NNRIRM AV+G  NS+ ARYAASRYKVIE  A G  ++V+W+LETGRTHQIRAHAKYLG
Sbjct: 298  TNNRIRMTAVTGPVNSKKARYAASRYKVIEILAGGSCSLVEWKLETGRTHQIRAHAKYLG 357

Query: 1136 IPLLGDEVYGGTKSMAXXXXXXXXXXXXHGHLTNILSKLERPCLHAFSLGFKHPHTGEFL 1315
            +PLLGDE+YGGTKSM             H  +  ++S+L+RPCLHA++LGF+HPHTGE +
Sbjct: 358  VPLLGDELYGGTKSMVLSLLRPRTPISLHSKIVKMVSRLDRPCLHAWTLGFQHPHTGEQV 417

Query: 1316 RFSCPPPEDFSEL 1354
             FSC PP DF+E+
Sbjct: 418  HFSCEPPADFAEI 430