BLASTX nr result

ID: Zingiber23_contig00040326 seq

BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Zingiber23_contig00040326
         (302 letters)

Database: ./nr 
           37,332,560 sequences; 13,225,080,153 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

ref|YP_008854638.1| hypothetical chloroplast RF21 [Curcuma rosco...    40   2e-06
gb|AGE93413.1| hypothetical chloroplast RF21 [Alpinia zerumbet] ...    40   2e-06
gb|AEZ48752.1| hypothetical chloroplast RF2, partial [Renealmia ...    40   2e-06
ref|YP_007475748.1| hypothetical chloroplast RF21 [Zingiber spec...    40   2e-06

>ref|YP_008854638.1| hypothetical chloroplast RF21 [Curcuma roscoeana]
            gi|567853753|ref|YP_008854655.1| hypothetical chloroplast
            RF21 [Curcuma roscoeana] gi|557637545|gb|AHA13140.1|
            hypothetical chloroplast RF21 [Curcuma roscoeana]
            gi|557637563|gb|AHA13158.1| hypothetical chloroplast RF21
            [Curcuma roscoeana]
          Length = 2269

 Score = 40.0 bits (92), Expect(2) = 2e-06
 Identities = 17/18 (94%), Positives = 18/18 (100%)
 Frame = -2

Query: 208  SDSEGKNLHQYLSFNSNM 155
            SDSEGKNLH+YLSFNSNM
Sbjct: 1131 SDSEGKNLHEYLSFNSNM 1148



 Score = 37.0 bits (84), Expect(2) = 2e-06
 Identities = 21/48 (43%), Positives = 26/48 (54%), Gaps = 3/48 (6%)
 Frame = -3

Query: 144  ESRQMYKTFSIR*CSFRSLK---LESFMVPYYHLIGWKYLNFTNLLEI 10
            E  QMY+TF      F   K    +++M  +    GWKYLNFT LLEI
Sbjct: 1178 EKGQMYRTFQRDSALFNLSKWNLFQTYMPWFLTSTGWKYLNFTTLLEI 1225


>gb|AGE93413.1| hypothetical chloroplast RF21 [Alpinia zerumbet]
            gi|449326854|gb|AGE93432.1| hypothetical chloroplast RF21
            [Alpinia zerumbet]
          Length = 2267

 Score = 40.0 bits (92), Expect(2) = 2e-06
 Identities = 17/18 (94%), Positives = 18/18 (100%)
 Frame = -2

Query: 208  SDSEGKNLHQYLSFNSNM 155
            SDSEGKNLH+YLSFNSNM
Sbjct: 1137 SDSEGKNLHEYLSFNSNM 1154



 Score = 37.0 bits (84), Expect(2) = 2e-06
 Identities = 21/48 (43%), Positives = 26/48 (54%), Gaps = 3/48 (6%)
 Frame = -3

Query: 144  ESRQMYKTFSIR*CSFRSLK---LESFMVPYYHLIGWKYLNFTNLLEI 10
            E  QMY+TF      F   K    +++M  +    GWKYLNFT LLEI
Sbjct: 1184 EKGQMYRTFQRDGALFNLSKWNLFQTYMPWFLTSTGWKYLNFTTLLEI 1231


>gb|AEZ48752.1| hypothetical chloroplast RF2, partial [Renealmia alpinia]
          Length = 2260

 Score = 40.0 bits (92), Expect(2) = 2e-06
 Identities = 17/18 (94%), Positives = 18/18 (100%)
 Frame = -2

Query: 208  SDSEGKNLHQYLSFNSNM 155
            SDSEGKNLH+YLSFNSNM
Sbjct: 1131 SDSEGKNLHEYLSFNSNM 1148



 Score = 37.0 bits (84), Expect(2) = 2e-06
 Identities = 21/48 (43%), Positives = 26/48 (54%), Gaps = 3/48 (6%)
 Frame = -3

Query: 144  ESRQMYKTFSIR*CSFRSLK---LESFMVPYYHLIGWKYLNFTNLLEI 10
            E  QMY+TF      F   K    +++M  +    GWKYLNFT LLEI
Sbjct: 1178 EKGQMYRTFQRDGALFNLSKWNLFQTYMPWFLTSTGWKYLNFTTLLEI 1225


>ref|YP_007475748.1| hypothetical chloroplast RF21 [Zingiber spectabile]
            gi|456061618|ref|YP_007475765.1| hypothetical chloroplast
            RF21 [Zingiber spectabile] gi|449326227|gb|AGE92812.1|
            hypothetical chloroplast RF21 [Zingiber spectabile]
            gi|449326246|gb|AGE92831.1| hypothetical chloroplast RF21
            [Zingiber spectabile]
          Length = 2206

 Score = 40.0 bits (92), Expect(2) = 2e-06
 Identities = 17/18 (94%), Positives = 18/18 (100%)
 Frame = -2

Query: 208  SDSEGKNLHQYLSFNSNM 155
            SDSEGKNLH+YLSFNSNM
Sbjct: 1076 SDSEGKNLHEYLSFNSNM 1093



 Score = 37.0 bits (84), Expect(2) = 2e-06
 Identities = 21/48 (43%), Positives = 26/48 (54%), Gaps = 3/48 (6%)
 Frame = -3

Query: 144  ESRQMYKTFSIR*CSFRSLK---LESFMVPYYHLIGWKYLNFTNLLEI 10
            E  QMY+TF      F   K    +++M  +    GWKYLNFT LLEI
Sbjct: 1123 EKGQMYRTFQRDSALFNLSKWNLFQTYMPWFLTSTGWKYLNFTTLLEI 1170


Top