BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Zingiber23_contig00038716
         (1546 letters)

Database: ./nr 
           37,332,560 sequences; 13,225,080,153 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

ref|NP_569153.1| poplyprotein [Citrus yellow mosaic virus] gi|16...   342   3e-91
gb|ACH86210.1| unknown [Citrus yellow mosaic virus]                   340   1e-90
gb|ACE76864.1| polyprotein [Citrus yellow mosaic virus]               340   1e-90
gb|AER00538.1| ORF III [Citrus yellow mosaic virus]                   338   3e-90
gb|AER00544.1| ORF III [Citrus yellow mosaic virus]                   337   1e-89
gb|ACB87156.1| polyprotein [Citrus yellow mosaic virus]               337   1e-89
gb|ACE76858.1| polyprotein [Citrus yellow mosaic virus]               334   5e-89
gb|ACB87150.1| polyprotein [Citrus yellow mosaic virus]               334   5e-89
emb|CAG70342.1| CP, RT, RNaseH and protease polyprotein [Cacao s...   330   1e-87
emb|CAE76628.1| polyprotein [Cacao swollen shoot virus]               329   2e-87
emb|CAE81279.1| polyprotein [Cacao swollen shoot virus]               329   2e-87
ref|YP_008567619.1| ORF3 [Piper yellow mottle virus] gi|54035746...   327   6e-87
ref|NP_041734.1| polyprotein [Cacao swollen shoot virus] gi|3478...   327   8e-87
emb|CAD59232.1| polyprotein [Cacao swollen shoot virus]               327   8e-87
ref|YP_006273075.1| polyprotein [Fig badnavirus 1] gi|333493962|...   323   9e-86
ref|YP_009002585.1| polyprotein [Hibiscus bacilliform virus GD1]...   322   4e-85
gb|AFM82591.1| polyprotein [Cacao swollen shoot virus]                312   3e-82
emb|CAE81285.1| polyprotein [Cacao swollen shoot virus]               299   2e-78
ref|YP_003284237.1| unnamed protein product [Sugarcane bacillifo...   278   3e-72
ref|YP_001036293.1| ORF3 protein [Dioscorea bacilliform virus] g...   272   2e-70

>ref|NP_569153.1| poplyprotein [Citrus yellow mosaic virus]
            gi|16416939|gb|AAL18495.1|AF347695_3 unknown [citrus
            yellow mosaic virus]
          Length = 1983

 Score =  342 bits (876), Expect = 3e-91
 Identities = 165/244 (67%), Positives = 198/244 (81%), Gaps = 2/244 (0%)
 Frame = -3

Query: 1544 RLTGGSYNHSLEQQMDPQTQLRLSMQERAAIVPAEVLYHSRRDDAHHRVYIHISEEAMLV 1365
            +L G  YN +LEQ +DP+  L+LSMQERA +VPAEVLY SR DD HH+VYIH SEEA+L 
Sbjct: 53   QLIGRPYNQTLEQVVDPEVALQLSMQERARLVPAEVLYRSRTDDRHHQVYIHKSEEAILC 112

Query: 1364 TE-NQIDRAFIQQESYIQLQRSGMRFLHMGVIQVRIQILHRQEEGTMALVVFRDNRWQGD 1188
             + +Q+DR  IQ ES  QL RSGM F+HMG++QVRIQILHRQ EGT ALVVFRDNRWQGD
Sbjct: 113  VDGDQVDRLLIQPESAEQLSRSGMSFIHMGIVQVRIQILHRQHEGTTALVVFRDNRWQGD 172

Query: 1187 QAIFTTMEIDLTHGSQLVYVIPDTMLTVSDFYRNIQVSILTRGYEGWRNGEANLLITRGL 1008
            Q+IF TME+DLT G Q+VY+IPDTM+TV DF RN+Q+SILT+GY  W+NGEANLL+TRG+
Sbjct: 173  QSIFATMELDLTKGMQMVYIIPDTMMTVRDFCRNVQISILTKGYGNWQNGEANLLVTRGI 232

Query: 1007 VGRLSNTPNVGFAYEVQNVVDYLVSHGVRALPERNYSTRDILGHNWIIRQSTV-NIPMQP 831
            VGRLSNTPNV FAY++QNV DYLVSHG++ALP R YST DI G  W +R S +  +PM P
Sbjct: 233  VGRLSNTPNVAFAYQIQNVTDYLVSHGIQALPGRRYSTADIQGQQWFLRPSNIPAVPMAP 292

Query: 830  TEVN 819
            T V+
Sbjct: 293  TNVD 296



 Score =  188 bits (478), Expect(2) = 1e-51
 Identities = 102/210 (48%), Positives = 131/210 (62%), Gaps = 18/210 (8%)
 Frame = +3

Query: 162  EIDYPQLSQLQ------------EQIYSQEAVSNYRPPIDTSMNPVGYPPNRTLKE---E 296
            E DYP  ++LQ            E++ S  A+S+Y PP DT+M PV YPP + +      
Sbjct: 581  EFDYPAFARLQAHEESGRPKPKTEKVLSS-AISSYTPPTDTAMTPVAYPPAQNIASPSYN 639

Query: 297  PVSMIPPIE---PRGTAFKRKDTSEWWNLPTAHQQTGALLTLPIQLNRVEDVFLRWEAIT 467
            P   +P  E   P+   FKR D   + +LP+A Q TGAL  +P Q+    +VF  WEAIT
Sbjct: 640  PSPQMPMFEGYYPKRPNFKR-DNHAFISLPSAQQNTGALFIMPQQIGLFHEVFTSWEAIT 698

Query: 468  KNVVAQQNFTDAHDKADFIENLLGETERLTWIQWRTAYPGEYQELLNSSDGRNGTQNIIS 647
            K  VAQQ  TD  DKA+FIEN+LG TE++ W QWR  Y  EY+ L+ ++DGR GTQNI+S
Sbjct: 699  KAYVAQQGITDPRDKAEFIENMLGPTEKIIWTQWRMGYADEYENLVTTADGREGTQNILS 758

Query: 648  QIRRVFLLEDPFQGSIDMQDRAYRDLERLS 737
            Q+RRVF LEDP  GS  +QD AYRDLERL+
Sbjct: 759  QMRRVFSLEDPTTGSTAVQDEAYRDLERLT 788



 Score = 43.9 bits (102), Expect(2) = 1e-51
 Identities = 17/29 (58%), Positives = 24/29 (82%)
 Frame = +1

Query: 736 PGDLGRRLKAAFDEKYQGNTTGVHPRVIF 822
           PGDLG+R+K A++EK+ GN  GV PR++F
Sbjct: 827 PGDLGQRMKKAYEEKHPGNIVGVCPRILF 855


>gb|ACH86210.1| unknown [Citrus yellow mosaic virus]
          Length = 463

 Score =  340 bits (872), Expect = 1e-90
 Identities = 163/244 (66%), Positives = 198/244 (81%), Gaps = 2/244 (0%)
 Frame = -3

Query: 1544 RLTGGSYNHSLEQQMDPQTQLRLSMQERAAIVPAEVLYHSRRDDAHHRVYIHISEEAMLV 1365
            +L G  YN +LEQ +DP+  L+LSMQERA +VPAEVLY SR DD HH+VYIH SEEA+L 
Sbjct: 53   QLIGRPYNQTLEQVVDPEVALQLSMQERARLVPAEVLYRSRNDDRHHQVYIHRSEEAILC 112

Query: 1364 TE-NQIDRAFIQQESYIQLQRSGMRFLHMGVIQVRIQILHRQEEGTMALVVFRDNRWQGD 1188
             + +Q+DR  IQ ES  QL RSGM F+HMG++QVRIQILHRQ EGT ALVVFRDNRWQGD
Sbjct: 113  VDGDQVDRLLIQPESAEQLNRSGMSFIHMGIVQVRIQILHRQHEGTTALVVFRDNRWQGD 172

Query: 1187 QAIFTTMEIDLTHGSQLVYVIPDTMLTVSDFYRNIQVSILTRGYEGWRNGEANLLITRGL 1008
            Q+IF TME+DLT G Q+VY+IPDTM+TV DF RN+Q+SILT+GY  W+NGEANLL+TRG+
Sbjct: 173  QSIFATMELDLTKGMQMVYIIPDTMMTVRDFCRNVQISILTKGYGNWQNGEANLLVTRGI 232

Query: 1007 VGRLSNTPNVGFAYEVQNVVDYLVSHGVRALPERNYSTRDILGHNWIIRQSTV-NIPMQP 831
            VGRLSNTPNV FAY++QNV DYLVSHG++ALP R YS+ D+ G  W +R S +  +PM P
Sbjct: 233  VGRLSNTPNVAFAYQIQNVTDYLVSHGIQALPGRRYSSADVQGQQWFLRPSNIPAVPMAP 292

Query: 830  TEVN 819
            T V+
Sbjct: 293  TNVD 296


>gb|ACE76864.1| polyprotein [Citrus yellow mosaic virus]
          Length = 1968

 Score =  340 bits (871), Expect = 1e-90
 Identities = 163/244 (66%), Positives = 198/244 (81%), Gaps = 2/244 (0%)
 Frame = -3

Query: 1544 RLTGGSYNHSLEQQMDPQTQLRLSMQERAAIVPAEVLYHSRRDDAHHRVYIHISEEAMLV 1365
            +L G  YN +LEQ +DP+  L+LSMQERA +VPAEVLY SR DD HH+VYIH SEEA+L 
Sbjct: 53   QLIGRPYNQTLEQVVDPEVALQLSMQERARLVPAEVLYRSRSDDRHHQVYIHRSEEAILC 112

Query: 1364 TE-NQIDRAFIQQESYIQLQRSGMRFLHMGVIQVRIQILHRQEEGTMALVVFRDNRWQGD 1188
             + +Q+DR  IQ ES  QL RSGM F+HMG++QVRIQILHRQ EGT ALVVFRDNRWQGD
Sbjct: 113  VDGDQVDRLLIQPESAEQLNRSGMSFIHMGIVQVRIQILHRQHEGTTALVVFRDNRWQGD 172

Query: 1187 QAIFTTMEIDLTHGSQLVYVIPDTMLTVSDFYRNIQVSILTRGYEGWRNGEANLLITRGL 1008
            Q+IF TME+DLT G Q+VY+IPDTM+TV DF RN+Q+SILT+GY  W+NGEANLL+TRG+
Sbjct: 173  QSIFATMELDLTKGMQMVYIIPDTMMTVRDFCRNVQISILTKGYGNWQNGEANLLVTRGI 232

Query: 1007 VGRLSNTPNVGFAYEVQNVVDYLVSHGVRALPERNYSTRDILGHNWIIRQSTV-NIPMQP 831
            VGRLSNTPNV FAY++QNV DYLVSHG++ALP R YS+ D+ G  W +R S +  +PM P
Sbjct: 233  VGRLSNTPNVAFAYQIQNVTDYLVSHGIQALPGRRYSSADVQGQQWFLRPSNIPAVPMAP 292

Query: 830  TEVN 819
            T V+
Sbjct: 293  TNVD 296



 Score =  191 bits (485), Expect(2) = 2e-52
 Identities = 104/210 (49%), Positives = 132/210 (62%), Gaps = 18/210 (8%)
 Frame = +3

Query: 162  EIDYPQLSQLQ------------EQIYSQEAVSNYRPPIDTSMNPVGYPPNRTL---KEE 296
            E DYP  ++LQ            E++ S  A+S+Y PP DT+M PV YPP + +      
Sbjct: 566  EFDYPAFARLQAHEESGQPKPKTEKVLSS-AISSYTPPRDTAMTPVAYPPAQNVAGPSYN 624

Query: 297  PVSMIPPIE---PRGTAFKRKDTSEWWNLPTAHQQTGALLTLPIQLNRVEDVFLRWEAIT 467
            P   +P  E   P+   FKR D   + +LP+AHQ TGAL  +P Q+    +VF  WEAIT
Sbjct: 625  PSPQMPMFEGYYPKRPNFKR-DNHAFISLPSAHQSTGALFLMPQQIGLFHEVFTSWEAIT 683

Query: 468  KNVVAQQNFTDAHDKADFIENLLGETERLTWIQWRTAYPGEYQELLNSSDGRNGTQNIIS 647
            K  VAQQ  TD  DKADFIEN+LG TE++ W QWR  Y  EY+ L+ ++DGR GTQNI+S
Sbjct: 684  KAYVAQQGITDPKDKADFIENMLGPTEKIIWTQWRMGYADEYENLVTTADGREGTQNILS 743

Query: 648  QIRRVFLLEDPFQGSIDMQDRAYRDLERLS 737
            Q+RRVF LEDP  GS  +QD AYRDLERL+
Sbjct: 744  QMRRVFSLEDPATGSTAVQDEAYRDLERLT 773



 Score = 43.5 bits (101), Expect(2) = 2e-52
 Identities = 17/29 (58%), Positives = 24/29 (82%)
 Frame = +1

Query: 736 PGDLGRRLKAAFDEKYQGNTTGVHPRVIF 822
           PGDLG+R+K A++EK+ GN  GV PR++F
Sbjct: 812 PGDLGQRMKKAYEEKHPGNIIGVCPRILF 840


>gb|AER00538.1| ORF III [Citrus yellow mosaic virus]
          Length = 1982

 Score =  338 bits (868), Expect = 3e-90
 Identities = 163/243 (67%), Positives = 196/243 (80%), Gaps = 2/243 (0%)
 Frame = -3

Query: 1544 RLTGGSYNHSLEQQMDPQTQLRLSMQERAAIVPAEVLYHSRRDDAHHRVYIHISEEAMLV 1365
            +L G  YN +LEQ +DP+  L+LSMQERA +VPAEVLY SR DD HH+VYIH SEEA+L 
Sbjct: 53   QLIGRPYNQTLEQVVDPEVALQLSMQERARLVPAEVLYRSRSDDRHHQVYIHRSEEAILC 112

Query: 1364 TE-NQIDRAFIQQESYIQLQRSGMRFLHMGVIQVRIQILHRQEEGTMALVVFRDNRWQGD 1188
             + +Q+DR  IQ ES  QL RSGM F+HMG++QVRIQILHRQ EGT ALVVFRDNRWQGD
Sbjct: 113  VDGDQVDRLLIQPESAEQLNRSGMPFIHMGIVQVRIQILHRQHEGTTALVVFRDNRWQGD 172

Query: 1187 QAIFTTMEIDLTHGSQLVYVIPDTMLTVSDFYRNIQVSILTRGYEGWRNGEANLLITRGL 1008
            Q+IF TME+DLT G Q+VY+IPDTM+TV DF RN+Q+SILT+GY  W+NGEANLL+TRG+
Sbjct: 173  QSIFATMELDLTKGMQMVYIIPDTMMTVRDFCRNVQISILTKGYGNWQNGEANLLVTRGI 232

Query: 1007 VGRLSNTPNVGFAYEVQNVVDYLVSHGVRALPERNYSTRDILGHNWIIRQSTV-NIPMQP 831
            VGRLSNTPNV FAY++QNV DYLVSHG++ALP R YS  D+ G  W +R S +  +PM P
Sbjct: 233  VGRLSNTPNVAFAYQIQNVTDYLVSHGIQALPGRRYSAADVQGQQWFLRPSNIPAVPMAP 292

Query: 830  TEV 822
            T V
Sbjct: 293  TNV 295



 Score =  179 bits (455), Expect(2) = 4e-49
 Identities = 99/209 (47%), Positives = 126/209 (60%), Gaps = 17/209 (8%)
 Frame = +3

Query: 162  EIDYPQLSQLQEQIYS-----------QEAVSNYRPPIDTSMNPVGYPPNRTLKE---EP 299
            E DYP  ++LQ    S             A+S+Y PP DT+M PV YPP + +      P
Sbjct: 581  EFDYPAFARLQSHEESGRPKPKTEKVLSSAISSYTPPTDTAMTPVAYPPAQNIASPSYNP 640

Query: 300  VSMIPPIE---PRGTAFKRKDTSEWWNLPTAHQQTGALLTLPIQLNRVEDVFLRWEAITK 470
               +P  E   P+   FKR D   + +LP+A Q TGAL  +P Q+    +VF  WEAITK
Sbjct: 641  SPQMPMFEGYYPKRPNFKR-DNHAFISLPSAQQNTGALFIMPQQIGLFHEVFTSWEAITK 699

Query: 471  NVVAQQNFTDAHDKADFIENLLGETERLTWIQWRTAYPGEYQELLNSSDGRNGTQNIISQ 650
              VAQQ  TD  DKA+FIEN+ G TE++ W QWR  Y  EY+ L+ ++DGR GTQNI+SQ
Sbjct: 700  AYVAQQGITDPRDKAEFIENM-GPTEKIIWTQWRMGYADEYENLVTTADGREGTQNILSQ 758

Query: 651  IRRVFLLEDPFQGSIDMQDRAYRDLERLS 737
            +RRVF LE P  GS  +QD AYRDLERL+
Sbjct: 759  MRRVFSLEGPTTGSTAVQDEAYRDLERLT 787



 Score = 43.9 bits (102), Expect(2) = 4e-49
 Identities = 17/29 (58%), Positives = 24/29 (82%)
 Frame = +1

Query: 736 PGDLGRRLKAAFDEKYQGNTTGVHPRVIF 822
           PGDLG+R+K A++EK+ GN  GV PR++F
Sbjct: 826 PGDLGQRMKKAYEEKHPGNIVGVCPRILF 854


>gb|AER00544.1| ORF III [Citrus yellow mosaic virus]
          Length = 1976

 Score =  337 bits (863), Expect = 1e-89
 Identities = 162/244 (66%), Positives = 196/244 (80%), Gaps = 2/244 (0%)
 Frame = -3

Query: 1544 RLTGGSYNHSLEQQMDPQTQLRLSMQERAAIVPAEVLYHSRRDDAHHRVYIHISEEAMLV 1365
            +L G  YN +LEQ +DP+  L+LSMQERA +VPAEVLY SR DD HH+VYIH SEEA+L 
Sbjct: 53   QLIGRPYNQTLEQVVDPEVALQLSMQERARLVPAEVLYRSRSDDRHHQVYIHRSEEAILC 112

Query: 1364 TE-NQIDRAFIQQESYIQLQRSGMRFLHMGVIQVRIQILHRQEEGTMALVVFRDNRWQGD 1188
             + +Q+DR  IQ ES  QL RSGM F+HMG++QVRI ILHRQ EGT ALVVFRDNRWQGD
Sbjct: 113  VDGDQVDRLLIQPESAEQLNRSGMPFIHMGIVQVRIPILHRQHEGTTALVVFRDNRWQGD 172

Query: 1187 QAIFTTMEIDLTHGSQLVYVIPDTMLTVSDFYRNIQVSILTRGYEGWRNGEANLLITRGL 1008
            Q+IF TME+DLT G Q+VY+IPDTM+TV DF RN+Q+SILT+GY  W+NGEANLL+TRG+
Sbjct: 173  QSIFATMELDLTKGMQMVYIIPDTMMTVRDFCRNVQISILTKGYGNWQNGEANLLVTRGI 232

Query: 1007 VGRLSNTPNVGFAYEVQNVVDYLVSHGVRALPERNYSTRDILGHNWIIRQSTV-NIPMQP 831
            VGRLSNTPNV FAY++QNV DYLVSHG++ALP R YS  D+ G  W +R S +  +PM P
Sbjct: 233  VGRLSNTPNVAFAYQIQNVTDYLVSHGIQALPGRRYSAADVQGQQWFLRPSNIPAVPMAP 292

Query: 830  TEVN 819
            T V+
Sbjct: 293  TNVD 296



 Score =  187 bits (474), Expect(2) = 3e-51
 Identities = 102/210 (48%), Positives = 130/210 (61%), Gaps = 18/210 (8%)
 Frame = +3

Query: 162  EIDYPQLSQLQ------------EQIYSQEAVSNYRPPIDTSMNPVGYPPNRTLKE---E 296
            E DYP  ++LQ            E++ S  A+S+Y PP DT+M PV YPP + +      
Sbjct: 573  EFDYPAFAKLQDYEKRSRPKPKTEKVLSS-AISSYTPPSDTAMTPVAYPPAQNIASPSYN 631

Query: 297  PVSMIPPIE---PRGTAFKRKDTSEWWNLPTAHQQTGALLTLPIQLNRVEDVFLRWEAIT 467
            P   IP  E   P+   FKR D   + +LP+A Q TGAL  +P Q+    +VF  WEAIT
Sbjct: 632  PSPQIPMFEGYSPKRPHFKR-DNHTFISLPSAQQNTGALFIMPQQIGLFHEVFTSWEAIT 690

Query: 468  KNVVAQQNFTDAHDKADFIENLLGETERLTWIQWRTAYPGEYQELLNSSDGRNGTQNIIS 647
            K  VAQQ  TD  DKA+FIEN+ G TE++ W QWR  Y  EY+ L+ ++DGR GTQNI+S
Sbjct: 691  KAYVAQQGITDPRDKAEFIENMSGPTEKIIWTQWRMGYADEYENLVTTADGREGTQNILS 750

Query: 648  QIRRVFLLEDPFQGSIDMQDRAYRDLERLS 737
            Q+RRVF LEDP  GS  +QD AYRDLERL+
Sbjct: 751  QMRRVFSLEDPATGSTAVQDEAYRDLERLT 780



 Score = 43.9 bits (102), Expect(2) = 3e-51
 Identities = 17/29 (58%), Positives = 24/29 (82%)
 Frame = +1

Query: 736 PGDLGRRLKAAFDEKYQGNTTGVHPRVIF 822
           PGDLG+R+K A++EK+ GN  GV PR++F
Sbjct: 819 PGDLGQRMKKAYEEKHPGNIVGVCPRILF 847


>gb|ACB87156.1| polyprotein [Citrus yellow mosaic virus]
          Length = 1979

 Score =  337 bits (863), Expect = 1e-89
 Identities = 162/244 (66%), Positives = 197/244 (80%), Gaps = 2/244 (0%)
 Frame = -3

Query: 1544 RLTGGSYNHSLEQQMDPQTQLRLSMQERAAIVPAEVLYHSRRDDAHHRVYIHISEEAMLV 1365
            +L G  YN +LEQ +DP+  L+LSMQERA +VPAEVLY SR DD HH+VYIH SEEA+L 
Sbjct: 53   QLIGRPYNQTLEQVVDPEVALQLSMQERARLVPAEVLYRSRSDDRHHQVYIHRSEEAILC 112

Query: 1364 TE-NQIDRAFIQQESYIQLQRSGMRFLHMGVIQVRIQILHRQEEGTMALVVFRDNRWQGD 1188
             + +Q+DR  IQ ES  QL RSGM F++MG++QVRIQILHRQ EGT ALVVFRDNRWQGD
Sbjct: 113  VDGDQVDRLLIQPESAEQLNRSGMSFINMGIVQVRIQILHRQHEGTTALVVFRDNRWQGD 172

Query: 1187 QAIFTTMEIDLTHGSQLVYVIPDTMLTVSDFYRNIQVSILTRGYEGWRNGEANLLITRGL 1008
            Q+IF TME+DLT G Q+VY+IPDTM+TV DF RN+Q+SILT+GY  W+NGEANLL+TRG+
Sbjct: 173  QSIFATMELDLTKGMQMVYIIPDTMMTVRDFCRNVQISILTKGYGNWQNGEANLLVTRGI 232

Query: 1007 VGRLSNTPNVGFAYEVQNVVDYLVSHGVRALPERNYSTRDILGHNWIIRQSTV-NIPMQP 831
            VGRLSNTPNV FAY++QNV DYLVSHG++ALP R YS  D+ G  W +R S +  +PM P
Sbjct: 233  VGRLSNTPNVAFAYQIQNVTDYLVSHGIQALPGRRYSAADVQGQQWFLRPSNIPAVPMAP 292

Query: 830  TEVN 819
            T V+
Sbjct: 293  TNVD 296



 Score =  191 bits (484), Expect(2) = 2e-52
 Identities = 104/210 (49%), Positives = 131/210 (62%), Gaps = 18/210 (8%)
 Frame = +3

Query: 162  EIDYPQLSQLQ------------EQIYSQEAVSNYRPPIDTSMNPVGYPPNRTLKE---E 296
            E DYP  ++LQ            E++ S  A+S+Y PP DT+M PV YPP + +      
Sbjct: 573  EFDYPAFAKLQDHEKCSRPKPKTEKVLSS-AISSYTPPSDTAMTPVAYPPAQNIASPSYN 631

Query: 297  PVSMIPPIE---PRGTAFKRKDTSEWWNLPTAHQQTGALLTLPIQLNRVEDVFLRWEAIT 467
            P   IP  E   P+   FKR D   + +LP+A Q TGAL  +P Q+    +VF  WEAIT
Sbjct: 632  PSPQIPMFEGYSPKRPHFKR-DNHTFISLPSAQQNTGALFIMPQQIGLFHEVFTSWEAIT 690

Query: 468  KNVVAQQNFTDAHDKADFIENLLGETERLTWIQWRTAYPGEYQELLNSSDGRNGTQNIIS 647
            K  VAQQ  TD  DKADFIEN+LG TE++ W QWR  Y  EY+ L+ ++DGR GTQNI+S
Sbjct: 691  KAYVAQQGITDPRDKADFIENMLGPTEKIIWTQWRMGYADEYENLVTTADGREGTQNILS 750

Query: 648  QIRRVFLLEDPFQGSIDMQDRAYRDLERLS 737
            Q+RRVF LEDP  GS  +QD AYRDLERL+
Sbjct: 751  QMRRVFSLEDPATGSTAVQDEAYRDLERLT 780



 Score = 43.9 bits (102), Expect(2) = 2e-52
 Identities = 17/29 (58%), Positives = 24/29 (82%)
 Frame = +1

Query: 736 PGDLGRRLKAAFDEKYQGNTTGVHPRVIF 822
           PGDLG+R+K A++EK+ GN  GV PR++F
Sbjct: 819 PGDLGQRMKKAYEEKHPGNIVGVCPRILF 847


>gb|ACE76858.1| polyprotein [Citrus yellow mosaic virus]
          Length = 1967

 Score =  334 bits (857), Expect = 5e-89
 Identities = 162/243 (66%), Positives = 194/243 (79%), Gaps = 2/243 (0%)
 Frame = -3

Query: 1544 RLTGGSYNHSLEQQMDPQTQLRLSMQERAAIVPAEVLYHSRRDDAHHRVYIHISEEAMLV 1365
            +L G  YN +LEQ +DP+  L+LSMQERA +VPAEVLY SR DD HH+VYIH SEEA+L 
Sbjct: 53   QLMGRPYNQTLEQVVDPEVALQLSMQERARLVPAEVLYRSRNDDRHHQVYIHRSEEAILC 112

Query: 1364 TE-NQIDRAFIQQESYIQLQRSGMRFLHMGVIQVRIQILHRQEEGTMALVVFRDNRWQGD 1188
             + +Q+DR  IQ ES  QL RSGM F+HMG++QVRIQILHRQ EGT ALVVFRDNRWQGD
Sbjct: 113  VDGDQVDRLLIQPESAEQLNRSGMSFIHMGIVQVRIQILHRQHEGTTALVVFRDNRWQGD 172

Query: 1187 QAIFTTMEIDLTHGSQLVYVIPDTMLTVSDFYRNIQVSILTRGYEGWRNGEANLLITRGL 1008
            Q+IF TME+DLT G Q+VY+IPDTM+TV DF RN+Q+SILT+GY  W+NGEANLL+TRG+
Sbjct: 173  QSIFATMELDLTKGMQMVYIIPDTMMTVRDFCRNVQISILTKGYGNWQNGEANLLVTRGI 232

Query: 1007 VGRLSNTPNVGFAYEVQNVVDYLVSHGVRALPERNYSTRDILGHNWIIRQSTVNI-PMQP 831
            VGRLSNTP V FAY++QNV DYLVSHG++ALP R YS  D+ G  W +R S +   PM P
Sbjct: 233  VGRLSNTPIVAFAYQIQNVTDYLVSHGIQALPGRRYSAADVQGQQWFLRPSNIPADPMAP 292

Query: 830  TEV 822
            T V
Sbjct: 293  TNV 295



 Score =  189 bits (481), Expect(2) = 4e-52
 Identities = 100/209 (47%), Positives = 129/209 (61%), Gaps = 17/209 (8%)
 Frame = +3

Query: 162  EIDYPQLSQLQEQIYS-----------QEAVSNYRPPIDTSMNPVGYPPNRTLKEEPVSM 308
            E DYP  ++LQ+   S             A+S+Y PP DT+M PV YPP + +     ++
Sbjct: 565  EFDYPAFARLQDHEESGRLKPKTEKVLSSAISSYTPPRDTAMTPVAYPPAQNVASPSYNL 624

Query: 309  IPPI------EPRGTAFKRKDTSEWWNLPTAHQQTGALLTLPIQLNRVEDVFLRWEAITK 470
             P +       P+   FKR D   + +LP+A Q TGAL  +P Q+    +VF  WEAITK
Sbjct: 625  SPQMPMFEGYSPKRPNFKR-DNHTFISLPSAQQNTGALFIMPQQIGLFHEVFTSWEAITK 683

Query: 471  NVVAQQNFTDAHDKADFIENLLGETERLTWIQWRTAYPGEYQELLNSSDGRNGTQNIISQ 650
              VAQQ  TD  DKADFIEN+LG TE++ W QWR  Y  EY+ L+ ++DGR GTQNI+SQ
Sbjct: 684  AYVAQQGITDPKDKADFIENMLGPTEKIIWTQWRMGYADEYENLVTTADGREGTQNILSQ 743

Query: 651  IRRVFLLEDPFQGSIDMQDRAYRDLERLS 737
            +RRVF LEDP  GS  +QD AYRDLERL+
Sbjct: 744  MRRVFSLEDPATGSTAVQDEAYRDLERLT 772



 Score = 43.9 bits (102), Expect(2) = 4e-52
 Identities = 17/29 (58%), Positives = 24/29 (82%)
 Frame = +1

Query: 736 PGDLGRRLKAAFDEKYQGNTTGVHPRVIF 822
           PGDLG+R+K A++EK+ GN  GV PR++F
Sbjct: 811 PGDLGQRMKKAYEEKHPGNIVGVCPRILF 839


>gb|ACB87150.1| polyprotein [Citrus yellow mosaic virus]
          Length = 1976

 Score =  334 bits (857), Expect = 5e-89
 Identities = 161/244 (65%), Positives = 196/244 (80%), Gaps = 2/244 (0%)
 Frame = -3

Query: 1544 RLTGGSYNHSLEQQMDPQTQLRLSMQERAAIVPAEVLYHSRRDDAHHRVYIHISEEAMLV 1365
            +L G  YN +LEQ +DP+  L+LSMQERA +VPAEVLY SR DD HH+VYIH SEEA+L 
Sbjct: 53   QLIGRPYNQTLEQVVDPEVALQLSMQERARLVPAEVLYRSRSDDRHHQVYIHRSEEAILC 112

Query: 1364 TE-NQIDRAFIQQESYIQLQRSGMRFLHMGVIQVRIQILHRQEEGTMALVVFRDNRWQGD 1188
             + +Q+DR  IQ ES  QL RSGM F++MG++QVRIQILHRQ EGT ALVVFRDNRWQGD
Sbjct: 113  VDGDQVDRLLIQPESAEQLNRSGMSFINMGIVQVRIQILHRQHEGTTALVVFRDNRWQGD 172

Query: 1187 QAIFTTMEIDLTHGSQLVYVIPDTMLTVSDFYRNIQVSILTRGYEGWRNGEANLLITRGL 1008
            Q+IF TME+DLT G Q+VY+IPDTM+TV DF RN+Q+SILT+ Y  W+NGEANLL+TRG+
Sbjct: 173  QSIFATMELDLTKGMQMVYIIPDTMMTVRDFCRNVQISILTKAYGNWQNGEANLLVTRGI 232

Query: 1007 VGRLSNTPNVGFAYEVQNVVDYLVSHGVRALPERNYSTRDILGHNWIIRQSTV-NIPMQP 831
            VGRLSNTPNV FAY++QNV DYLVSHG++ALP R YS  D+ G  W +R S +  +PM P
Sbjct: 233  VGRLSNTPNVAFAYQIQNVTDYLVSHGIQALPGRRYSAADVQGQQWFLRPSNIPAVPMAP 292

Query: 830  TEVN 819
            T V+
Sbjct: 293  TNVD 296



 Score =  190 bits (482), Expect(2) = 3e-52
 Identities = 103/210 (49%), Positives = 131/210 (62%), Gaps = 18/210 (8%)
 Frame = +3

Query: 162  EIDYPQLSQLQ------------EQIYSQEAVSNYRPPIDTSMNPVGYPPNRTLKE---E 296
            E DYP  ++LQ            E++ S  A+S+Y PP DT+M PV YPP + +      
Sbjct: 573  EFDYPAFAKLQDHEKCSRPKPKTEKVLSS-AISSYTPPSDTAMTPVAYPPAQNIASPSYN 631

Query: 297  PVSMIPPIE---PRGTAFKRKDTSEWWNLPTAHQQTGALLTLPIQLNRVEDVFLRWEAIT 467
            P   +P  E   P+   FKR D   + +LP+A Q TGAL  +P Q+    +VF  WEAIT
Sbjct: 632  PSPQVPMFEGYSPKRPHFKR-DNHTFISLPSAQQNTGALFIMPQQIGLSHEVFTSWEAIT 690

Query: 468  KNVVAQQNFTDAHDKADFIENLLGETERLTWIQWRTAYPGEYQELLNSSDGRNGTQNIIS 647
            K  VAQQ  TD  DKADFIEN+LG TE++ W QWR  Y  EY+ L+ ++DGR GTQNI+S
Sbjct: 691  KAYVAQQGITDPRDKADFIENMLGPTEKIIWTQWRMGYADEYENLVTTADGREGTQNILS 750

Query: 648  QIRRVFLLEDPFQGSIDMQDRAYRDLERLS 737
            Q+RRVF LEDP  GS  +QD AYRDLERL+
Sbjct: 751  QMRRVFSLEDPATGSTAVQDEAYRDLERLT 780



 Score = 43.9 bits (102), Expect(2) = 3e-52
 Identities = 17/29 (58%), Positives = 24/29 (82%)
 Frame = +1

Query: 736 PGDLGRRLKAAFDEKYQGNTTGVHPRVIF 822
           PGDLG+R+K A++EK+ GN  GV PR++F
Sbjct: 819 PGDLGQRMKKAYEEKHPGNIVGVCPRILF 847


>emb|CAG70342.1| CP, RT, RNaseH and protease polyprotein [Cacao swollen shoot virus]
          Length = 1868

 Score =  330 bits (846), Expect = 1e-87
 Identities = 159/242 (65%), Positives = 194/242 (80%), Gaps = 2/242 (0%)
 Frame = -3

Query: 1541 LTGGSYNHSLEQQMDPQTQLRLSMQERAAIVPAEVLYHSRRDDAHHRVYIHISEEAML-V 1365
            +TG  Y  +LEQ++DPQT LRLSMQERA +VPAEVLY SRRD  HHRVY H SEE++L +
Sbjct: 54   VTGSRYQETLEQEIDPQTTLRLSMQERARLVPAEVLYRSRRDTVHHRVYTHRSEESVLCI 113

Query: 1364 TENQIDRAFIQQESYIQLQRSGMRFLHMGVIQVRIQILHRQEEGTMALVVFRDNRWQGDQ 1185
              NQ+DRAFIQ ES  QLQR+GM F+H+G++QVRIQILHRQEEGTMALVVFRDNRW GDQ
Sbjct: 114  GNNQVDRAFIQPESLEQLQRTGMSFIHIGILQVRIQILHRQEEGTMALVVFRDNRWTGDQ 173

Query: 1184 AIFTTMEIDLTHGSQLVYVIPDTMLTVSDFYRNIQVSILTRGYEGWRNGEANLLITRGLV 1005
            +IF  MEIDLT GSQLV+V+PDTM+T+ DF RN+Q+SILTRGYE W+NGEANLLITRG+ 
Sbjct: 174  SIFAQMEIDLTKGSQLVFVVPDTMMTIGDFARNVQLSILTRGYESWQNGEANLLITRGMT 233

Query: 1004 GRLSNTPNVGFAYEVQNVVDYLVSHGVRALPERNYSTRDILGHNWIIRQSTVNI-PMQPT 828
            GRLSNTPNV FAY++ +  DYL SHGV+A+  +  + + +    WI+R    ++ PMQP 
Sbjct: 234  GRLSNTPNVAFAYQIASATDYLASHGVKAIAGKKLNLQHLRNQQWILRPPQADVTPMQPR 293

Query: 827  EV 822
             V
Sbjct: 294  SV 295



 Score =  201 bits (512), Expect(2) = 4e-54
 Identities = 108/212 (50%), Positives = 133/212 (62%), Gaps = 6/212 (2%)
 Frame = +3

Query: 120  WTFAFLGVVS*VSWEIDYPQLSQLQEQIYSQEAVSNYRPPIDTSMNPVGYPPNRTLKEEP 299
            WT    G+ S    E++YPQ    Q +       ++Y PP DT M PVGYPP  + +   
Sbjct: 473  WTEIIAGINS----EMEYPQRRPQQTETVVYSETADYTPPGDTVMTPVGYPPASSSRSTV 528

Query: 300  VSMI-PPIE----PRGTAF-KRKDTSEWWNLPTAHQQTGALLTLPIQLNRVEDVFLRWEA 461
             +   PP+     P    F KR D +EWW LP++   TGAL  +P Q+    +VF RWE+
Sbjct: 529  TAPTRPPLYEGRMPHAPRFLKRDDYTEWWQLPSSQGTTGALFVMPRQVGLFHEVFSRWES 588

Query: 462  ITKNVVAQQNFTDAHDKADFIENLLGETERLTWIQWRTAYPGEYQELLNSSDGRNGTQNI 641
            ITKN VA Q FTD  +K +FIENLLGETE+LTWIQWR  Y  EYQ LL  +DGR GTQNI
Sbjct: 589  ITKNYVAAQGFTDPVEKMEFIENLLGETEKLTWIQWRMNYETEYQTLLTLADGRQGTQNI 648

Query: 642  ISQIRRVFLLEDPFQGSIDMQDRAYRDLERLS 737
            +SQI+RVF LEDP  GS  +QD AYRDLERL+
Sbjct: 649  LSQIKRVFSLEDPASGSTRIQDAAYRDLERLT 680



 Score = 38.9 bits (89), Expect(2) = 4e-54
 Identities = 15/29 (51%), Positives = 21/29 (72%)
 Frame = +1

Query: 736 PGDLGRRLKAAFDEKYQGNTTGVHPRVIF 822
           P +LG R+K AF ++Y GN  GV PR++F
Sbjct: 719 PPELGHRMKEAFQKEYAGNEVGVFPRILF 747


>emb|CAE76628.1| polyprotein [Cacao swollen shoot virus]
          Length = 1847

 Score =  329 bits (843), Expect = 2e-87
 Identities = 161/242 (66%), Positives = 193/242 (79%), Gaps = 2/242 (0%)
 Frame = -3

Query: 1541 LTGGSYNHSLEQQMDPQTQLRLSMQERAAIVPAEVLYHSRRDDAHHRVYIHISEEAML-V 1365
            + G  Y  +LEQ++DPQT LRLSMQERA +VPAEVLY SRRD  HHRVY H SEE++L V
Sbjct: 55   MMGSRYQETLEQEIDPQTTLRLSMQERARLVPAEVLYRSRRDTVHHRVYTHRSEESVLCV 114

Query: 1364 TENQIDRAFIQQESYIQLQRSGMRFLHMGVIQVRIQILHRQEEGTMALVVFRDNRWQGDQ 1185
              NQ+DRAFIQ ES  QLQR+GM F+H+G++QVRIQILHRQEEGTMALVVFRDNRW GDQ
Sbjct: 115  GGNQVDRAFIQPESLEQLQRTGMSFIHIGILQVRIQILHRQEEGTMALVVFRDNRWSGDQ 174

Query: 1184 AIFTTMEIDLTHGSQLVYVIPDTMLTVSDFYRNIQVSILTRGYEGWRNGEANLLITRGLV 1005
            +IF  MEIDLT GSQLV+VIPDTM+T+ DF RN+Q+SILTRGYE W+NGEANLLITRG+ 
Sbjct: 175  SIFAQMEIDLTKGSQLVFVIPDTMMTIGDFARNVQLSILTRGYENWQNGEANLLITRGMT 234

Query: 1004 GRLSNTPNVGFAYEVQNVVDYLVSHGVRALPERNYSTRDILGHNWIIRQSTVNI-PMQPT 828
            GRLSNTPNV FAY++ +  DYL SHGV+A+  +  + + +    WI+R    +I PMQP 
Sbjct: 235  GRLSNTPNVAFAYQIASATDYLASHGVKAIAGKKMNLQHLRNQQWILRPPQADITPMQPR 294

Query: 827  EV 822
             V
Sbjct: 295  SV 296



 Score =  202 bits (514), Expect = 3e-49
 Identities = 107/199 (53%), Positives = 133/199 (66%), Gaps = 7/199 (3%)
 Frame = +3

Query: 162  EIDYPQLSQLQEQIYSQEAVSNYRPPIDTSMNPVGYPP---NRTLKEEPVSMIPPIEPRG 332
            E++YP+     E ++S+    +Y PP DT M PVGYPP   +R+    P S  P  E R 
Sbjct: 459  EMEYPRRRPQTETVFSETV--DYTPPGDTLMTPVGYPPASSSRSTVTTP-SRPPLFEGRV 515

Query: 333  TA----FKRKDTSEWWNLPTAHQQTGALLTLPIQLNRVEDVFLRWEAITKNVVAQQNFTD 500
            T      KR D +EWW LP++   TGAL  +P Q+    DVF RWE+ITKN VA Q+FTD
Sbjct: 516  THVPRFLKRDDYTEWWQLPSSQGTTGALFVMPKQIGLFHDVFSRWESITKNYVAAQSFTD 575

Query: 501  AHDKADFIENLLGETERLTWIQWRTAYPGEYQELLNSSDGRNGTQNIISQIRRVFLLEDP 680
              +K +F+ENLLGETE+LTWIQWR  Y  EYQ+LL  +DGR GTQNI+SQI+RVF LEDP
Sbjct: 576  PTEKMEFMENLLGETEKLTWIQWRMNYEAEYQQLLTQADGRQGTQNILSQIKRVFSLEDP 635

Query: 681  FQGSIDMQDRAYRDLERLS 737
              GS  +QD AYRDLERL+
Sbjct: 636  ASGSTRIQDAAYRDLERLT 654


>emb|CAE81279.1| polyprotein [Cacao swollen shoot virus]
          Length = 1816

 Score =  329 bits (843), Expect = 2e-87
 Identities = 161/242 (66%), Positives = 193/242 (79%), Gaps = 2/242 (0%)
 Frame = -3

Query: 1541 LTGGSYNHSLEQQMDPQTQLRLSMQERAAIVPAEVLYHSRRDDAHHRVYIHISEEAML-V 1365
            + G  Y  +LEQ++DPQT LRLSMQERA +VPAEVLY SRRD  HHRVY H SEE++L V
Sbjct: 55   MMGSRYQETLEQEIDPQTTLRLSMQERARLVPAEVLYRSRRDTVHHRVYTHRSEESVLCV 114

Query: 1364 TENQIDRAFIQQESYIQLQRSGMRFLHMGVIQVRIQILHRQEEGTMALVVFRDNRWQGDQ 1185
              NQ+DRAFIQ ES  QLQR+GM F+H+G++QVRIQILHRQEEGTMALVVFRDNRW GDQ
Sbjct: 115  GGNQVDRAFIQPESLEQLQRTGMSFIHIGILQVRIQILHRQEEGTMALVVFRDNRWSGDQ 174

Query: 1184 AIFTTMEIDLTHGSQLVYVIPDTMLTVSDFYRNIQVSILTRGYEGWRNGEANLLITRGLV 1005
            +IF  MEIDLT GSQLV+VIPDTM+T+ DF RN+Q+SILTRGYE W+NGEANLLITRG+ 
Sbjct: 175  SIFAQMEIDLTKGSQLVFVIPDTMMTIGDFARNVQLSILTRGYENWQNGEANLLITRGMT 234

Query: 1004 GRLSNTPNVGFAYEVQNVVDYLVSHGVRALPERNYSTRDILGHNWIIRQSTVNI-PMQPT 828
            GRLSNTPNV FAY++ +  DYL SHGV+A+  +  + + +    WI+R    +I PMQP 
Sbjct: 235  GRLSNTPNVAFAYQIASATDYLASHGVKAIAGKKMNLQHLRNQQWILRPPQADITPMQPR 294

Query: 827  EV 822
             V
Sbjct: 295  SV 296



 Score =  200 bits (509), Expect = 1e-48
 Identities = 106/199 (53%), Positives = 132/199 (66%), Gaps = 7/199 (3%)
 Frame = +3

Query: 162  EIDYPQLSQLQEQIYSQEAVSNYRPPIDTSMNPVGYPP---NRTLKEEPVSMIPPIEPRG 332
            E++YP+     E ++S+    +Y PP DT M PVGYPP   +R+    P S  P  E R 
Sbjct: 458  EMEYPRRRPRTETVFSETV--DYTPPGDTLMTPVGYPPASSSRSTVTTP-SRPPLFEGRV 514

Query: 333  TA----FKRKDTSEWWNLPTAHQQTGALLTLPIQLNRVEDVFLRWEAITKNVVAQQNFTD 500
            T      KR D +EWW LP++   TGAL  +P Q+    +VF RWE+ITKN VA Q FTD
Sbjct: 515  THVPRFLKRDDYTEWWQLPSSQGTTGALFVMPKQMGLFHEVFSRWESITKNYVAAQGFTD 574

Query: 501  AHDKADFIENLLGETERLTWIQWRTAYPGEYQELLNSSDGRNGTQNIISQIRRVFLLEDP 680
              +K +F+ENLLGETE+LTWIQWR  Y  EYQ+LL  +DGR GTQNI+SQI+RVF LEDP
Sbjct: 575  PTEKMEFMENLLGETEKLTWIQWRMNYEAEYQQLLTQADGRQGTQNILSQIKRVFSLEDP 634

Query: 681  FQGSIDMQDRAYRDLERLS 737
              GS  +QD AYRDLERL+
Sbjct: 635  ASGSTRIQDAAYRDLERLT 653


>ref|YP_008567619.1| ORF3 [Piper yellow mottle virus] gi|540357465|gb|AGV08293.1| ORF3
            [Piper yellow mottle virus]
          Length = 1925

 Score =  327 bits (839), Expect = 6e-87
 Identities = 148/233 (63%), Positives = 195/233 (83%), Gaps = 1/233 (0%)
 Frame = -3

Query: 1514 LEQQMDPQTQLRLSMQERAAIVPAEVLYHSRRDDAHHRVYIHISEEAMLVTE-NQIDRAF 1338
            +EQ +DPQ QL  SM +RA+IVPAEVLYHSR+DD +H+VYIH SEEA+ VTE NQ+DR F
Sbjct: 47   IEQSLDPQKQLMRSMTQRASIVPAEVLYHSRKDDVNHKVYIHRSEEALSVTEGNQVDRTF 106

Query: 1337 IQQESYIQLQRSGMRFLHMGVIQVRIQILHRQEEGTMALVVFRDNRWQGDQAIFTTMEID 1158
            IQ+ES+ +L +SG++F+H+GV+QVR+QILHR+EEGT+ALVVFRDNRW+GD+ I  TME+D
Sbjct: 107  IQEESHKKLVKSGIKFIHLGVLQVRLQILHRKEEGTLALVVFRDNRWKGDKGIIATMEVD 166

Query: 1157 LTHGSQLVYVIPDTMLTVSDFYRNIQVSILTRGYEGWRNGEANLLITRGLVGRLSNTPNV 978
            LT G Q+VY+IPD M+TV+DFY NI +S+LTRGYEGW++GEANLL+TRG++GRLSNTPNV
Sbjct: 167  LTKGCQMVYIIPDIMMTVNDFYHNIHISVLTRGYEGWQHGEANLLVTRGMIGRLSNTPNV 226

Query: 977  GFAYEVQNVVDYLVSHGVRALPERNYSTRDILGHNWIIRQSTVNIPMQPTEVN 819
            GFAY++Q VVDY ++HGV ALP   Y T  + G  WI+++  + +P +P  +N
Sbjct: 227  GFAYDIQEVVDYFITHGVNALPGAKYDTTRLQGQQWILKKPELIVPTRPGHIN 279



 Score =  212 bits (539), Expect(2) = 3e-60
 Identities = 104/199 (52%), Positives = 133/199 (66%), Gaps = 7/199 (3%)
 Frame = +3

Query: 162  EIDYPQLSQL----QEQIYSQEAVSNYRPPIDTSMNPVGYPPNRTLKEEPVSMIPPIE-- 323
            +++YP +  L    QE   +Q  +S YRPP DT+M P  YPP   +  E     P  E  
Sbjct: 557  DMEYPHVRALRLKMQEVFSAQSEISQYRPPQDTAMGPSSYPPAVNITNEAGPSRPMFEGY 616

Query: 324  -PRGTAFKRKDTSEWWNLPTAHQQTGALLTLPIQLNRVEDVFLRWEAITKNVVAQQNFTD 500
               G  FK KD ++ W LP+A QQ GA+  +P QL   + VF RWE+ITKN+VA Q FTD
Sbjct: 617  NKSGVRFKHKDLADNWTLPSAQQQQGAVFVIPTQLGLFDSVFARWESITKNLVAAQGFTD 676

Query: 501  AHDKADFIENLLGETERLTWIQWRTAYPGEYQELLNSSDGRNGTQNIISQIRRVFLLEDP 680
              DK DFIENLLGE E+LTWIQWR+ Y  EYQ+++NS+DGR GT+NI+SQ+RR+F LEDP
Sbjct: 677  PADKVDFIENLLGEAEKLTWIQWRSTYQAEYQQMMNSADGRAGTENILSQVRRIFALEDP 736

Query: 681  FQGSIDMQDRAYRDLERLS 737
              GS  +QD AYRDLE+L+
Sbjct: 737  STGSTKIQDEAYRDLEQLT 755



 Score = 48.9 bits (115), Expect(2) = 3e-60
 Identities = 20/30 (66%), Positives = 25/30 (83%)
 Frame = +1

Query: 736 PGDLGRRLKAAFDEKYQGNTTGVHPRVIFT 825
           PG+LGRR+K AFD KY+GN  GV PR++FT
Sbjct: 794 PGNLGRRIKEAFDNKYKGNEAGVIPRILFT 823


>ref|NP_041734.1| polyprotein [Cacao swollen shoot virus] gi|347871|gb|AAA03171.1|
            polyprotein [Cacao swollen shoot virus]
          Length = 1834

 Score =  327 bits (838), Expect = 8e-87
 Identities = 160/242 (66%), Positives = 193/242 (79%), Gaps = 2/242 (0%)
 Frame = -3

Query: 1541 LTGGSYNHSLEQQMDPQTQLRLSMQERAAIVPAEVLYHSRRDDAHHRVYIHISEEAML-V 1365
            + G  Y  +LEQ++DPQT LRLSMQERA +VPAEVLY SRRD  HHRVY H SEE++L V
Sbjct: 55   MMGSRYQETLEQEIDPQTTLRLSMQERARLVPAEVLYRSRRDTVHHRVYTHRSEESVLCV 114

Query: 1364 TENQIDRAFIQQESYIQLQRSGMRFLHMGVIQVRIQILHRQEEGTMALVVFRDNRWQGDQ 1185
              +Q+DRAFIQ ES  QLQR+GM F+H+G++QVRIQILHRQEEGTMALVVFRDNRW GDQ
Sbjct: 115  GGSQVDRAFIQPESLEQLQRTGMSFIHIGILQVRIQILHRQEEGTMALVVFRDNRWSGDQ 174

Query: 1184 AIFTTMEIDLTHGSQLVYVIPDTMLTVSDFYRNIQVSILTRGYEGWRNGEANLLITRGLV 1005
            +IF  MEIDLT GSQLV+VIPDTM+T+ DF RN+Q+SILTRGYE W+NGEANLLITRG+ 
Sbjct: 175  SIFAQMEIDLTKGSQLVFVIPDTMMTIGDFARNVQLSILTRGYENWQNGEANLLITRGMT 234

Query: 1004 GRLSNTPNVGFAYEVQNVVDYLVSHGVRALPERNYSTRDILGHNWIIRQSTVNI-PMQPT 828
            GRLSNTPNV FAY++ +  DYL SHGV+A+  +  + + +    WI+R    +I PMQP 
Sbjct: 235  GRLSNTPNVAFAYQIASATDYLASHGVKAIAGKKMNLQHLRNQQWILRPPQTDITPMQPR 294

Query: 827  EV 822
             V
Sbjct: 295  SV 296



 Score =  198 bits (503), Expect = 6e-48
 Identities = 104/199 (52%), Positives = 131/199 (65%), Gaps = 7/199 (3%)
 Frame = +3

Query: 162  EIDYPQLSQLQEQIYSQEAVSNYRPPIDTSMNPVGYPP---NRTLKEEPVSMIPPIEPRG 332
            E++YP+     E  +S+    +Y PP DT M PVGYPP   +R+    P S  P  E R 
Sbjct: 454  EMEYPKRRPQTEMAFSETV--DYTPPGDTMMTPVGYPPASSSRSTVTTP-SRPPLFEGRT 510

Query: 333  TA----FKRKDTSEWWNLPTAHQQTGALLTLPIQLNRVEDVFLRWEAITKNVVAQQNFTD 500
            T      KR + +EWW LP++   TGAL  +P Q+    +VF RWE+ITKN VA Q FTD
Sbjct: 511  THVPRFLKRDEYTEWWQLPSSQGTTGALFVMPKQMGLFHEVFSRWESITKNYVAAQGFTD 570

Query: 501  AHDKADFIENLLGETERLTWIQWRTAYPGEYQELLNSSDGRNGTQNIISQIRRVFLLEDP 680
              +K +F+ENLLGETE+LTWIQWR  Y  EYQ+LL  +DGR GTQNI+SQI+R+F LEDP
Sbjct: 571  PTEKMEFMENLLGETEKLTWIQWRMNYEAEYQQLLTQADGRQGTQNILSQIKRIFSLEDP 630

Query: 681  FQGSIDMQDRAYRDLERLS 737
              GS  +QD AYRDLERL+
Sbjct: 631  ASGSTRIQDAAYRDLERLT 649


>emb|CAD59232.1| polyprotein [Cacao swollen shoot virus]
          Length = 1839

 Score =  327 bits (838), Expect = 8e-87
 Identities = 160/242 (66%), Positives = 193/242 (79%), Gaps = 2/242 (0%)
 Frame = -3

Query: 1541 LTGGSYNHSLEQQMDPQTQLRLSMQERAAIVPAEVLYHSRRDDAHHRVYIHISEEAML-V 1365
            + G  Y  +LEQ++DPQT LRLSMQERA +VPAEVLY SRRD  HHRVY H SEE++L V
Sbjct: 55   MMGSRYQETLEQEIDPQTTLRLSMQERARLVPAEVLYRSRRDTVHHRVYTHRSEESVLCV 114

Query: 1364 TENQIDRAFIQQESYIQLQRSGMRFLHMGVIQVRIQILHRQEEGTMALVVFRDNRWQGDQ 1185
              +Q+DRAFIQ ES  QLQR+GM F+H+G++QVRIQILHRQEEGTMALVVFRDNRW GDQ
Sbjct: 115  GGSQVDRAFIQPESLEQLQRTGMSFIHIGILQVRIQILHRQEEGTMALVVFRDNRWSGDQ 174

Query: 1184 AIFTTMEIDLTHGSQLVYVIPDTMLTVSDFYRNIQVSILTRGYEGWRNGEANLLITRGLV 1005
            +IF  MEIDLT GSQLV+VIPDTM+T+ DF RN+Q+SILTRGYE W+NGEANLLITRG+ 
Sbjct: 175  SIFAQMEIDLTKGSQLVFVIPDTMMTIGDFARNVQLSILTRGYENWQNGEANLLITRGMT 234

Query: 1004 GRLSNTPNVGFAYEVQNVVDYLVSHGVRALPERNYSTRDILGHNWIIRQSTVNI-PMQPT 828
            GRLSNTPNV FAY++ +  DYL SHGV+A+  +  + + +    WI+R    +I PMQP 
Sbjct: 235  GRLSNTPNVAFAYQIASATDYLASHGVKAIAGKKMNLQHLRNQQWILRPPQTDITPMQPR 294

Query: 827  EV 822
             V
Sbjct: 295  SV 296



 Score =  198 bits (503), Expect = 6e-48
 Identities = 105/199 (52%), Positives = 131/199 (65%), Gaps = 7/199 (3%)
 Frame = +3

Query: 162  EIDYPQLSQLQEQIYSQEAVSNYRPPIDTSMNPVGYPP---NRTLKEEPVSMIPPIEPRG 332
            E++YP+     E  +S+    +Y PP DT M PVGYPP   +R+    P S  P  E R 
Sbjct: 454  EMEYPKRRPQTETAFSETV--DYTPPGDTMMTPVGYPPASSSRSTVTTP-SRPPLFEGRT 510

Query: 333  TA----FKRKDTSEWWNLPTAHQQTGALLTLPIQLNRVEDVFLRWEAITKNVVAQQNFTD 500
            T      KR + +EWW LP++   TGAL  +P Q+    +VF RWE+ITKN VA Q FTD
Sbjct: 511  THVPRFLKRDEYTEWWQLPSSQGTTGALFVMPKQMGLFHEVFSRWESITKNYVAAQGFTD 570

Query: 501  AHDKADFIENLLGETERLTWIQWRTAYPGEYQELLNSSDGRNGTQNIISQIRRVFLLEDP 680
              +K +F+ENLLGETE+LTWIQWR  Y  EYQ+LL  +DGR GTQNI+SQI+RVF LEDP
Sbjct: 571  PTEKMEFMENLLGETEKLTWIQWRMNYEAEYQQLLTQADGRQGTQNILSQIKRVFSLEDP 630

Query: 681  FQGSIDMQDRAYRDLERLS 737
              GS  +QD AYRDLERL+
Sbjct: 631  ASGSTRIQDAAYRDLERLT 649


>ref|YP_006273075.1| polyprotein [Fig badnavirus 1] gi|333493962|gb|AEF56561.1|
            polyprotein [Fig badnavirus 1]
          Length = 1837

 Score =  323 bits (829), Expect = 9e-86
 Identities = 154/241 (63%), Positives = 187/241 (77%)
 Frame = -3

Query: 1544 RLTGGSYNHSLEQQMDPQTQLRLSMQERAAIVPAEVLYHSRRDDAHHRVYIHISEEAMLV 1365
            R+ G  YN +LEQ +DP+ +L  SMQERA +VPAEVLY SRRD+ +H++Y H SEEAML 
Sbjct: 56   RMRGRRYNQTLEQIVDPEVELNQSMQERANLVPAEVLYRSRRDNINHQIYNHRSEEAMLC 115

Query: 1364 TENQIDRAFIQQESYIQLQRSGMRFLHMGVIQVRIQILHRQEEGTMALVVFRDNRWQGDQ 1185
               Q DR FIQ  S+ +LQRSGM+F+H+GV+QVR+QILHR + GTMALVVFRDNRWQGDQ
Sbjct: 116  VGEQQDRMFIQPNSFQELQRSGMQFIHLGVLQVRLQILHRADGGTMALVVFRDNRWQGDQ 175

Query: 1184 AIFTTMEIDLTHGSQLVYVIPDTMLTVSDFYRNIQVSILTRGYEGWRNGEANLLITRGLV 1005
            +IF   E+DLT GSQ+VYVIPDTM+ + DFYRN+Q+SI T GYE W+NGEANLLITRG+ 
Sbjct: 176  SIFAISEVDLTRGSQIVYVIPDTMMIIGDFYRNVQISIQTSGYENWQNGEANLLITRGMT 235

Query: 1004 GRLSNTPNVGFAYEVQNVVDYLVSHGVRALPERNYSTRDILGHNWIIRQSTVNIPMQPTE 825
            GRLSNTPNVGFAY + +V DYL S GV+ALP R Y +  + G NWIIRQ  +   M P  
Sbjct: 236  GRLSNTPNVGFAYRISHVTDYLASRGVQALPGRRYRSEMLRGRNWIIRQPQIQAAMMPRN 295

Query: 824  V 822
            V
Sbjct: 296  V 296



 Score =  189 bits (481), Expect(2) = 5e-50
 Identities = 97/198 (48%), Positives = 126/198 (63%), Gaps = 4/198 (2%)
 Frame = +3

Query: 156  SWEIDYPQ-LSQLQEQIYSQEAVSNYRPPIDTSMNPVGYPPNRTLKEEPVSMI---PPIE 323
            S E+DYPQ + ++++ + + E  S YRPP D +M    YPP RT+     S     P  +
Sbjct: 478  SEEMDYPQRMKKIEKLLSTSEVTSPYRPPEDAAMGRPSYPPARTIPGGGASSSAEPPRFD 537

Query: 324  PRGTAFKRKDTSEWWNLPTAHQQTGALLTLPIQLNRVEDVFLRWEAITKNVVAQQNFTDA 503
               T FK     E W LP+A Q+ GA+  +P QL    D F RWE++TKN VA Q FTD 
Sbjct: 538  AARTRFKGGYNDEMWTLPSAQQKNGAMFVIPEQLGLFNDAFSRWESVTKNHVATQGFTDT 597

Query: 504  HDKADFIENLLGETERLTWIQWRTAYPGEYQELLNSSDGRNGTQNIISQIRRVFLLEDPF 683
             DK  ++ENLLGE E+L WIQWR  Y  EY+ L+   +GR+GTQNI+SQ+RRVF LEDP 
Sbjct: 598  RDKIKYMENLLGEIEKLIWIQWRMTYATEYEALVAIGEGRDGTQNILSQMRRVFSLEDPA 657

Query: 684  QGSIDMQDRAYRDLERLS 737
            QGS  +QD AYR+LER+S
Sbjct: 658  QGSTVIQDEAYRELERMS 675



 Score = 37.0 bits (84), Expect(2) = 5e-50
 Identities = 16/29 (55%), Positives = 20/29 (68%)
 Frame = +1

Query: 736 PGDLGRRLKAAFDEKYQGNTTGVHPRVIF 822
           PGDL + +K  FD KY G  +GV PRV+F
Sbjct: 714 PGDLRKTIKEDFDNKYPGVVSGVVPRVLF 742


>ref|YP_009002585.1| polyprotein [Hibiscus bacilliform virus GD1]
            gi|584388573|gb|AHI90954.1| polyprotein [Hibiscus
            bacilliform virus GD1]
          Length = 1892

 Score =  322 bits (824), Expect = 4e-85
 Identities = 155/245 (63%), Positives = 192/245 (78%), Gaps = 3/245 (1%)
 Frame = -3

Query: 1544 RLTGGS-YNHSLEQQMDPQTQLRLSMQERAAIVPAEVLYHSRRDDAHHRVYIHISEEAML 1368
            R+TG   Y  +LEQ++DPQ  L++SMQERA +VPAEVLY SRRD  HHRVY H SEEA+L
Sbjct: 56   RITGRQPYQETLEQEVDPQADLQMSMQERARLVPAEVLYRSRRDTIHHRVYSHRSEEAIL 115

Query: 1367 VTE-NQIDRAFIQQESYIQLQRSGMRFLHMGVIQVRIQILHRQEEGTMALVVFRDNRWQG 1191
             T+ NQ+DR FIQ ES   LQR+G+ F+H+G++QVR+QILHRQ EGTMALVVFRD RW G
Sbjct: 116  CTDGNQVDRTFIQPESMEALQRTGISFIHIGIMQVRLQILHRQNEGTMALVVFRDTRWNG 175

Query: 1190 DQAIFTTMEIDLTHGSQLVYVIPDTMLTVSDFYRNIQVSILTRGYEGWRNGEANLLITRG 1011
            DQ+IF TME+DLT G Q++YV+PDTM+T+ DF RNIQ+SILTRGY  W+NGEANLL+TRG
Sbjct: 176  DQSIFATMEVDLTEGRQIIYVVPDTMMTIGDFARNIQISILTRGYSNWQNGEANLLVTRG 235

Query: 1010 LVGRLSNTPNVGFAYEVQNVVDYLVSHGVRALPERNYSTRDILGHNWIIRQSTV-NIPMQ 834
            +VGRLSNTPNV FAYE+ NV DYL S GV+A+  R Y +R++    WI+R   V  +P  
Sbjct: 236  IVGRLSNTPNVAFAYEIGNVTDYLTSQGVQAIAGRRYDSRELQNQQWILRPPQVERLPQA 295

Query: 833  PTEVN 819
            P  V+
Sbjct: 296  PKNVD 300



 Score =  213 bits (542), Expect(2) = 2e-58
 Identities = 107/198 (54%), Positives = 136/198 (68%), Gaps = 7/198 (3%)
 Frame = +3

Query: 165  IDYPQLSQL---QEQIYS--QEAVSNYRPPIDTSMNPVGYPPNRTLKEEPVS--MIPPIE 323
            + YP L +L   +E+++S  Q  VS+YRPP DT+M P GY P R          M     
Sbjct: 502  LPYPHLRELLKNEEKVFSTQQSEVSSYRPPQDTAMTPAGYAPARGEASSSTHQPMFEGYM 561

Query: 324  PRGTAFKRKDTSEWWNLPTAHQQTGALLTLPIQLNRVEDVFLRWEAITKNVVAQQNFTDA 503
            PR   FK+  ++E+W  PTA  QTGA+  +P Q+    D F RWE+ITKN VA Q FTD+
Sbjct: 562  PRRPQFKQDRSTEYWQFPTAQGQTGAMFVIPRQIGLFHDAFNRWESITKNYVASQGFTDS 621

Query: 504  HDKADFIENLLGETERLTWIQWRTAYPGEYQELLNSSDGRNGTQNIISQIRRVFLLEDPF 683
             DKA+F+ENLLGETE+LTW+QWR  +P EYQE++N++DGR GTQNI+SQ+RRVF LEDP 
Sbjct: 622  KDKAEFMENLLGETEKLTWVQWRMNFPTEYQEMVNAADGREGTQNILSQMRRVFTLEDPT 681

Query: 684  QGSIDMQDRAYRDLERLS 737
             GS  +QD AYRDLERLS
Sbjct: 682  TGSTAVQDEAYRDLERLS 699



 Score = 41.6 bits (96), Expect(2) = 2e-58
 Identities = 15/30 (50%), Positives = 24/30 (80%)
 Frame = +1

Query: 736 PGDLGRRLKAAFDEKYQGNTTGVHPRVIFT 825
           P DLG +++ A++ K++GNT GV PR++FT
Sbjct: 738 PYDLGNKIRTAYEAKHEGNTIGVFPRILFT 767


>gb|AFM82591.1| polyprotein [Cacao swollen shoot virus]
          Length = 1872

 Score =  312 bits (799), Expect = 3e-82
 Identities = 152/244 (62%), Positives = 189/244 (77%), Gaps = 4/244 (1%)
 Frame = -3

Query: 1541 LTGGSYNH--SLEQQMDPQTQLRLSMQERAAIVPAEVLYHSRRDDAHHRVYIHISEEAML 1368
            LTG    H  +LEQ++DPQ  LRLSMQERA +VPAEVLY SRRD  HHRVY H SEE++L
Sbjct: 53   LTGSRSRHQETLEQEIDPQVTLRLSMQERARLVPAEVLYRSRRDTVHHRVYTHRSEESIL 112

Query: 1367 -VTENQIDRAFIQQESYIQLQRSGMRFLHMGVIQVRIQILHRQEEGTMALVVFRDNRWQG 1191
             V  NQ+DR FIQ  S  +LQR+GM F+H+G++QVRIQILHRQEEGTMALVVFRDNRW G
Sbjct: 113  CVGGNQVDRTFIQPSSLERLQRTGMSFIHIGILQVRIQILHRQEEGTMALVVFRDNRWAG 172

Query: 1190 DQAIFTTMEIDLTHGSQLVYVIPDTMLTVSDFYRNIQVSILTRGYEGWRNGEANLLITRG 1011
            DQAIF  ME+DLT GSQLV+V+PDTM+T+ DF RN+Q+SILTRGY+ W+NGEANLL+TR 
Sbjct: 173  DQAIFAQMEVDLTKGSQLVFVVPDTMMTIGDFARNVQLSILTRGYDNWQNGEANLLVTRS 232

Query: 1010 LVGRLSNTPNVGFAYEVQNVVDYLVSHGVRALPERNYSTRDILGHNWIIRQSTVNI-PMQ 834
            + GRLSNTPNV FA ++ +  DYL SHGV+A+  +  + + +    W++R    ++ PMQ
Sbjct: 233  MTGRLSNTPNVAFACQIASATDYLASHGVKAIAGKKVNLQQLRNQQWVLRPPQADVLPMQ 292

Query: 833  PTEV 822
            P  V
Sbjct: 293  PRSV 296



 Score =  197 bits (502), Expect = 8e-48
 Identities = 100/206 (48%), Positives = 136/206 (66%), Gaps = 7/206 (3%)
 Frame = +3

Query: 141  VVS*VSWEIDYPQL-SQLQEQIYSQEAVSNYRPPIDTSMNPVGYPPNRTLKEEPVSMIPP 317
            +++ ++ E++YPQ  +++ E ++S+  + +Y PP DT M PVGYPP  + +    +   P
Sbjct: 479  IIASLNPEMEYPQRRTEVAETVFSE--IVDYTPPGDTLMTPVGYPPASSSRSTVTTPSRP 536

Query: 318  ------IEPRGTAFKRKDTSEWWNLPTAHQQTGALLTLPIQLNRVEDVFLRWEAITKNVV 479
                  I       +R D +EWW LP++   TGAL  +P Q+    DVF RWE+ITKN V
Sbjct: 537  PLYEGRIPSASRVLRRDDYTEWWQLPSSQGTTGALFVMPKQIGLFHDVFSRWESITKNYV 596

Query: 480  AQQNFTDAHDKADFIENLLGETERLTWIQWRTAYPGEYQELLNSSDGRNGTQNIISQIRR 659
            + Q  TD  +K +FIENLLGETE+LTWIQWR  Y  EYQ+LL  ++GR GTQNI+SQI+R
Sbjct: 597  SAQGITDPTEKMEFIENLLGETEKLTWIQWRMRYEAEYQQLLTLAEGRQGTQNILSQIKR 656

Query: 660  VFLLEDPFQGSIDMQDRAYRDLERLS 737
            VF LEDP  GS  +QD AYRDLERL+
Sbjct: 657  VFSLEDPASGSTRIQDSAYRDLERLT 682


>emb|CAE81285.1| polyprotein [Cacao swollen shoot virus]
          Length = 1770

 Score =  299 bits (765), Expect = 2e-78
 Identities = 147/219 (67%), Positives = 175/219 (79%), Gaps = 2/219 (0%)
 Frame = -3

Query: 1472 MQERAAIVPAEVLYHSRRDDAHHRVYIHISEEAML-VTENQIDRAFIQQESYIQLQRSGM 1296
            MQERA +VPAEVLY SRRD  HHRVY H SEE++L V  NQ+DRAFIQ ES  QLQR+GM
Sbjct: 1    MQERARLVPAEVLYRSRRDTVHHRVYTHRSEESVLCVGGNQVDRAFIQPESLEQLQRTGM 60

Query: 1295 RFLHMGVIQVRIQILHRQEEGTMALVVFRDNRWQGDQAIFTTMEIDLTHGSQLVYVIPDT 1116
             F+ +G++QVRIQILHRQEEGTMALVVFRDNRW GDQ+IF  MEIDLT GSQLV+VIPDT
Sbjct: 61   SFIQIGILQVRIQILHRQEEGTMALVVFRDNRWSGDQSIFAQMEIDLTKGSQLVFVIPDT 120

Query: 1115 MLTVSDFYRNIQVSILTRGYEGWRNGEANLLITRGLVGRLSNTPNVGFAYEVQNVVDYLV 936
            M+T+ DF RN+Q+SILTRGYE W+NGEANLLITRG+ GRLSNTPNV FAY++ +  DYL 
Sbjct: 121  MMTIGDFARNVQLSILTRGYENWQNGEANLLITRGMTGRLSNTPNVAFAYQIASATDYLA 180

Query: 935  SHGVRALPERNYSTRDILGHNWIIRQSTVNI-PMQPTEV 822
            SHGV+A+  +  + + +    WI+R    +I PMQP  V
Sbjct: 181  SHGVKAIAGKKMNLQHLRNQQWILRPPQADITPMQPRSV 219



 Score =  202 bits (513), Expect = 4e-49
 Identities = 107/199 (53%), Positives = 132/199 (66%), Gaps = 7/199 (3%)
 Frame = +3

Query: 162 EIDYPQLSQLQEQIYSQEAVSNYRPPIDTSMNPVGYPP---NRTLKEEPVSMIPPIEPRG 332
           E++YP+     E ++S+    +Y PP DT M PVGYPP   +R+    P S  P  E R 
Sbjct: 382 EMEYPRRRPQTETVFSETV--DYTPPGDTLMTPVGYPPASSSRSTVTTP-SRPPLFEGRV 438

Query: 333 TA----FKRKDTSEWWNLPTAHQQTGALLTLPIQLNRVEDVFLRWEAITKNVVAQQNFTD 500
           T      KR D +EWW LP++   TGAL  +P Q+    DVF RWE+ITKN VA Q FTD
Sbjct: 439 THVPRFLKRDDYTEWWQLPSSQGTTGALFVMPKQMGLFHDVFSRWESITKNYVAAQGFTD 498

Query: 501 AHDKADFIENLLGETERLTWIQWRTAYPGEYQELLNSSDGRNGTQNIISQIRRVFLLEDP 680
             +K +F+ENLLGETE+LTWIQWR  Y  EYQ+LL  +DGR GTQNI+SQI+RVF LEDP
Sbjct: 499 PTEKMEFMENLLGETEKLTWIQWRMNYEAEYQQLLTQADGRQGTQNILSQIKRVFSLEDP 558

Query: 681 FQGSIDMQDRAYRDLERLS 737
             GS  +QD AYRDLERL+
Sbjct: 559 ASGSTRIQDAAYRDLERLT 577


>ref|YP_003284237.1| unnamed protein product [Sugarcane bacilliform virus]
            gi|240114281|gb|ACS44708.1| ORF3 protein [Sugarcane
            bacilliform virus]
          Length = 1792

 Score =  278 bits (712), Expect = 3e-72
 Identities = 138/260 (53%), Positives = 185/260 (71%), Gaps = 2/260 (0%)
 Frame = -3

Query: 1520 HSLEQQMDPQTQLRLSMQERAAIVPAEVLYHSRRDDAHHRVYIHISEEAMLVTEN-QIDR 1344
            H+L   M+P+ +L+ SMQERA  VPAEVLY +RRDD HHRVY H SEE MLV  N Q DR
Sbjct: 62   HTLALLMNPEVELQRSMQERARTVPAEVLYMTRRDDIHHRVYHHRSEERMLVLRNDQQDR 121

Query: 1343 AFIQQESYIQLQRSGMRFLHMGVIQVRIQILHRQEEGTMALVVFRDNRW-QGDQAIFTTM 1167
             FIQQESY  L ++G+ ++H+GV+QVR QILHR+  GT+A +VFRD RW + D++I   M
Sbjct: 122  TFIQQESYEALAQAGLEYIHLGVLQVRFQILHRRYAGTVAFLVFRDTRWNEDDRSIIAAM 181

Query: 1166 EIDLTHGSQLVYVIPDTMLTVSDFYRNIQVSILTRGYEGWRNGEANLLITRGLVGRLSNT 987
            E+DL  G+QLVYVIPD M+T+ DFYR+IQ+SI T+GY+ W  GEANLLITR +  RLSNT
Sbjct: 182  EVDLAEGNQLVYVIPDIMMTIKDFYRHIQISIKTKGYDTWEGGEANLLITRSITSRLSNT 241

Query: 986  PNVGFAYEVQNVVDYLVSHGVRALPERNYSTRDILGHNWIIRQSTVNIPMQPTEVNITLG 807
            PNVGFAY+++ V +YL S GV+A+    +S +   G  W ++ S V +PMQP+ +N +  
Sbjct: 242  PNVGFAYKIERVAEYLRSKGVKAINATKHSAKQFQGGEWTLKPSRVVVPMQPSSMNTSTK 301

Query: 806  WTPVVLP*YFSSKAALSLRP 747
            +   +   +   +A+ S RP
Sbjct: 302  YDGSISIRFGDYEASTSSRP 321



 Score =  139 bits (351), Expect = 2e-30
 Identities = 80/190 (42%), Positives = 113/190 (59%), Gaps = 1/190 (0%)
 Frame = +3

Query: 168 DYPQLSQLQEQIY-SQEAVSNYRPPIDTSMNPVGYPPNRTLKEEPVSMIPPIEPRGTAFK 344
           +YP+L ++ E +  S E  S+YRPP      P GY P  T ++   S  PP   R   F+
Sbjct: 409 EYPELKKISELVNASSEVTSSYRPPEIDMTGPAGYAP-ATSQQGWASSHPPTSGRN--FR 465

Query: 345 RKDTSEWWNLPTAHQQTGALLTLPIQLNRVEDVFLRWEAITKNVVAQQNFTDAHDKADFI 524
            KD S ++ LP+A QQ G++L L    +    +F RWE+ T N +A ++F  A DK  ++
Sbjct: 466 YKDPSGYFALPSAQQQNGSILLLSPTYDT--KIFERWESTTLNHMADKSFATAEDKLIYL 523

Query: 525 ENLLGETERLTWIQWRTAYPGEYQELLNSSDGRNGTQNIISQIRRVFLLEDPFQGSIDMQ 704
           ENLLGE E+ T+  WR A+P E++ +   + G NGTQN ISQIRR+F LEDP  GS   Q
Sbjct: 524 ENLLGEMEKKTFQTWRMAFPTEFELMKTQALGANGTQNSISQIRRIFYLEDPKTGSTTSQ 583

Query: 705 DRAYRDLERL 734
           D AY+ ++ L
Sbjct: 584 DAAYKAIKSL 593


>ref|YP_001036293.1| ORF3 protein [Dioscorea bacilliform virus]
            gi|113901272|gb|ABI47983.1| ORF3 protein [Dioscorea
            bacilliform virus]
          Length = 1887

 Score =  272 bits (696), Expect = 2e-70
 Identities = 128/237 (54%), Positives = 179/237 (75%)
 Frame = -3

Query: 1535 GGSYNHSLEQQMDPQTQLRLSMQERAAIVPAEVLYHSRRDDAHHRVYIHISEEAMLVTEN 1356
            G  Y  +LEQQ+DP+  L+LS  +RA+++PAEVLYH+R D  +H+VY+H SEEA L+  N
Sbjct: 47   GTYYAPTLEQQVDPERTLQLSAIKRASMIPAEVLYHARPDTVNHKVYMHWSEEADLIVNN 106

Query: 1355 QIDRAFIQQESYIQLQRSGMRFLHMGVIQVRIQILHRQEEGTMALVVFRDNRWQGDQAIF 1176
            Q D  FI+ ESY++L+++ M+F+H+G++QVRIQ+LHR E GTMAL+VFRD  W+G ++  
Sbjct: 107  QHDSTFIRPESYLELRKANMQFIHIGLMQVRIQVLHRHEAGTMALIVFRDCSWKGRRSTI 166

Query: 1175 TTMEIDLTHGSQLVYVIPDTMLTVSDFYRNIQVSILTRGYEGWRNGEANLLITRGLVGRL 996
              ME+DLT GSQLVY+ P+    ++DFY NIQVSILT+GY+ ++N EANLLIT+G++GRL
Sbjct: 167  ARMEVDLTKGSQLVYIAPNITKKLTDFYNNIQVSILTKGYDDYQNSEANLLITKGMIGRL 226

Query: 995  SNTPNVGFAYEVQNVVDYLVSHGVRALPERNYSTRDILGHNWIIRQSTVNIPMQPTE 825
            SNT NVGFAY V  V +Y ++HGV+AL     +T D+ G  W I+ S + +P QPT+
Sbjct: 227  SNTSNVGFAYTVDGVAEYFITHGVQALKGMPMTTDDLQGTLWNIKPSRIIVPSQPTQ 283



 Score =  210 bits (535), Expect(2) = 7e-60
 Identities = 105/194 (54%), Positives = 137/194 (70%), Gaps = 2/194 (1%)
 Frame = +3

Query: 162  EIDYPQLSQLQE-QIYSQEAVSNYRPPIDTSMNPVGYPPNRTLKEEPVSMIPPIE-PRGT 335
            + DYPQL QL++  I +  AVSNY PP DT+MNP  YPP R  +  P    P    P GT
Sbjct: 594  DFDYPQLRQLEDCVIAASSAVSNYTPPEDTTMNPPTYPPARIDQAGPSHSGPSYSVPSGT 653

Query: 336  AFKRKDTSEWWNLPTAHQQTGALLTLPIQLNRVEDVFLRWEAITKNVVAQQNFTDAHDKA 515
             FK  + S    LP+A Q TGA+  +P++L++ ++VF RWE+ITKN+ +Q +F    +KA
Sbjct: 654  RFKPMNYSANLQLPSAQQTTGAMFYMPLELDKFDEVFSRWESITKNITSQHSFISGREKA 713

Query: 516  DFIENLLGETERLTWIQWRTAYPGEYQELLNSSDGRNGTQNIISQIRRVFLLEDPFQGSI 695
            DFIENLLGETE+LTWIQWRT +  E+  L+ ++DGR GTQNIISQIR +F LEDPF+GS 
Sbjct: 714  DFIENLLGETEKLTWIQWRTTFNAEFDSLIAAADGREGTQNIISQIRTIFSLEDPFRGST 773

Query: 696  DMQDRAYRDLERLS 737
             +Q+ AYRDLER+S
Sbjct: 774  KIQEDAYRDLERIS 787



 Score = 49.3 bits (116), Expect(2) = 7e-60
 Identities = 19/30 (63%), Positives = 25/30 (83%)
 Frame = +1

Query: 736 PGDLGRRLKAAFDEKYQGNTTGVHPRVIFT 825
           PGDLG+ +K +FD+ Y GNT GVHPR++FT
Sbjct: 826 PGDLGKTIKDSFDKTYVGNTVGVHPRILFT 855