BLASTX nr result
ID: Zingiber23_contig00038538
seq
BLASTX 2.2.25 [Feb-01-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= Zingiber23_contig00038538
(708 letters)
Database: ./nr
37,332,560 sequences; 13,225,080,153 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
ref|XP_003574945.1| PREDICTED: DNA-directed RNA polymerase III s... 120 3e-25
ref|XP_006653556.1| PREDICTED: DNA-directed RNA polymerase III s... 119 7e-25
gb|EEE61245.1| hypothetical protein OsJ_15297 [Oryza sativa Japo... 119 7e-25
ref|NP_001053175.1| Os04g0492300 [Oryza sativa Japonica Group] g... 119 7e-25
ref|XP_002446717.1| hypothetical protein SORBIDRAFT_06g021120 [S... 118 2e-24
ref|XP_004976057.1| PREDICTED: DNA-directed RNA polymerase III s... 113 7e-23
tpg|DAA37181.1| TPA: putative DNA-directed RNA polymerase family... 112 1e-22
ref|XP_003570766.1| PREDICTED: DNA-directed RNA polymerase III s... 100 8e-19
ref|XP_004251448.1| PREDICTED: DNA-directed RNA polymerase III s... 89 1e-15
emb|CBI16226.3| unnamed protein product [Vitis vinifera] 87 5e-15
ref|XP_002284657.1| PREDICTED: DNA-directed RNA polymerase III s... 87 5e-15
gb|EMT07732.1| DNA-directed RNA polymerase III subunit RPC1 [Aeg... 86 9e-15
ref|XP_006365152.1| PREDICTED: DNA-directed RNA polymerase III s... 84 3e-14
ref|XP_006365151.1| PREDICTED: DNA-directed RNA polymerase III s... 84 3e-14
gb|EXB53230.1| DNA-directed RNA polymerase III subunit RPC1 [Mor... 84 4e-14
ref|XP_006400888.1| hypothetical protein EUTSA_v10012446mg [Eutr... 83 1e-13
ref|XP_003539102.1| PREDICTED: DNA-directed RNA polymerase III s... 83 1e-13
ref|XP_004148776.1| PREDICTED: DNA-directed RNA polymerase III s... 82 1e-13
ref|XP_002864665.1| hypothetical protein ARALYDRAFT_496142 [Arab... 82 1e-13
gb|ESW04135.1| hypothetical protein PHAVU_011G070100g [Phaseolus... 82 2e-13
>ref|XP_003574945.1| PREDICTED: DNA-directed RNA polymerase III subunit rpc1-like
[Brachypodium distachyon]
Length = 1392
Score = 120 bits (302), Expect = 3e-25
Identities = 57/72 (79%), Positives = 64/72 (88%)
Frame = -1
Query: 216 MARREEKLRCTKEPFIEDVGPRRIKSIKFSAFSGEEIRKLAEVQVWNNRIYGADLRPVQN 37
MAR EEKLRCTKEPF+EDVG RRIKS++FS FSG+EIR+ AE QVWNNRIYG D++PV N
Sbjct: 1 MARPEEKLRCTKEPFVEDVGTRRIKSMRFSMFSGKEIRQSAETQVWNNRIYGNDMKPVPN 60
Query: 36 GLLDTRMGAANK 1
GLLD RMGAANK
Sbjct: 61 GLLDPRMGAANK 72
>ref|XP_006653556.1| PREDICTED: DNA-directed RNA polymerase III subunit rpc1-like [Oryza
brachyantha]
Length = 1389
Score = 119 bits (299), Expect = 7e-25
Identities = 57/72 (79%), Positives = 63/72 (87%)
Frame = -1
Query: 216 MARREEKLRCTKEPFIEDVGPRRIKSIKFSAFSGEEIRKLAEVQVWNNRIYGADLRPVQN 37
MAR EEKLRCTKEPFIED G RRIKSI+FS FSG E+R+ AEVQVWN+RIY ++RPV N
Sbjct: 1 MARPEEKLRCTKEPFIEDAGTRRIKSIRFSMFSGNEVRQSAEVQVWNSRIYNQEMRPVPN 60
Query: 36 GLLDTRMGAANK 1
GLLDTRMGAANK
Sbjct: 61 GLLDTRMGAANK 72
>gb|EEE61245.1| hypothetical protein OsJ_15297 [Oryza sativa Japonica Group]
Length = 1321
Score = 119 bits (299), Expect = 7e-25
Identities = 57/72 (79%), Positives = 64/72 (88%)
Frame = -1
Query: 216 MARREEKLRCTKEPFIEDVGPRRIKSIKFSAFSGEEIRKLAEVQVWNNRIYGADLRPVQN 37
MAR EEKLRCTKEPFIEDVG RRIKSI+FS FSG E+R+ AEVQVWN+RIY +++PV N
Sbjct: 1 MARPEEKLRCTKEPFIEDVGTRRIKSIRFSMFSGNEVRQSAEVQVWNSRIYNHEMKPVPN 60
Query: 36 GLLDTRMGAANK 1
GLLDTRMGAANK
Sbjct: 61 GLLDTRMGAANK 72
>ref|NP_001053175.1| Os04g0492300 [Oryza sativa Japonica Group]
gi|38346223|emb|CAE02045.2| OJ990528_30.3 [Oryza sativa
Japonica Group] gi|38347455|emb|CAD41360.2|
OSJNBa0076N16.24 [Oryza sativa Japonica Group]
gi|113564746|dbj|BAF15089.1| Os04g0492300 [Oryza sativa
Japonica Group] gi|116310339|emb|CAH67354.1|
OSIGBa0130B08.14 [Oryza sativa Indica Group]
gi|116310740|emb|CAH67535.1| H0425E08.3 [Oryza sativa
Indica Group] gi|215768005|dbj|BAH00234.1| unnamed
protein product [Oryza sativa Japonica Group]
gi|218195112|gb|EEC77539.1| hypothetical protein
OsI_16437 [Oryza sativa Indica Group]
Length = 1383
Score = 119 bits (299), Expect = 7e-25
Identities = 57/72 (79%), Positives = 64/72 (88%)
Frame = -1
Query: 216 MARREEKLRCTKEPFIEDVGPRRIKSIKFSAFSGEEIRKLAEVQVWNNRIYGADLRPVQN 37
MAR EEKLRCTKEPFIEDVG RRIKSI+FS FSG E+R+ AEVQVWN+RIY +++PV N
Sbjct: 1 MARPEEKLRCTKEPFIEDVGTRRIKSIRFSMFSGNEVRQSAEVQVWNSRIYNHEMKPVPN 60
Query: 36 GLLDTRMGAANK 1
GLLDTRMGAANK
Sbjct: 61 GLLDTRMGAANK 72
>ref|XP_002446717.1| hypothetical protein SORBIDRAFT_06g021120 [Sorghum bicolor]
gi|241937900|gb|EES11045.1| hypothetical protein
SORBIDRAFT_06g021120 [Sorghum bicolor]
Length = 1391
Score = 118 bits (296), Expect = 2e-24
Identities = 57/72 (79%), Positives = 61/72 (84%)
Frame = -1
Query: 216 MARREEKLRCTKEPFIEDVGPRRIKSIKFSAFSGEEIRKLAEVQVWNNRIYGADLRPVQN 37
MA+ EEKLRCTKEPFIEDVG RRIKSI+FS SG EIRK AEVQVWNNRIYG D++PV N
Sbjct: 1 MAKPEEKLRCTKEPFIEDVGTRRIKSIRFSVLSGSEIRKSAEVQVWNNRIYGHDMKPVPN 60
Query: 36 GLLDTRMGAANK 1
GLLD RMG NK
Sbjct: 61 GLLDPRMGVPNK 72
>ref|XP_004976057.1| PREDICTED: DNA-directed RNA polymerase III subunit rpc1-like
[Setaria italica]
Length = 1397
Score = 113 bits (282), Expect = 7e-23
Identities = 55/72 (76%), Positives = 61/72 (84%)
Frame = -1
Query: 216 MARREEKLRCTKEPFIEDVGPRRIKSIKFSAFSGEEIRKLAEVQVWNNRIYGADLRPVQN 37
MA+ EEKLRCTKEPFIEDVG RRIKSI+FS SG EIRK AEVQVWN+RIY D++PV N
Sbjct: 1 MAKPEEKLRCTKEPFIEDVGARRIKSIRFSVLSGSEIRKSAEVQVWNSRIYEHDMKPVPN 60
Query: 36 GLLDTRMGAANK 1
GLLD RMG A+K
Sbjct: 61 GLLDMRMGLASK 72
>tpg|DAA37181.1| TPA: putative DNA-directed RNA polymerase family protein [Zea mays]
Length = 1030
Score = 112 bits (280), Expect = 1e-22
Identities = 55/72 (76%), Positives = 58/72 (80%)
Frame = -1
Query: 216 MARREEKLRCTKEPFIEDVGPRRIKSIKFSAFSGEEIRKLAEVQVWNNRIYGADLRPVQN 37
MA+ EEKLRCTKEPFIEDVG RRIKSI+FS SG EIRK AEVQVWNNRIY D+ PV N
Sbjct: 1 MAKPEEKLRCTKEPFIEDVGTRRIKSIRFSVLSGSEIRKSAEVQVWNNRIYDRDMTPVPN 60
Query: 36 GLLDTRMGAANK 1
GLLD RMG K
Sbjct: 61 GLLDPRMGIPTK 72
>ref|XP_003570766.1| PREDICTED: DNA-directed RNA polymerase III subunit rpc1-like
[Brachypodium distachyon]
Length = 1400
Score = 99.8 bits (247), Expect = 8e-19
Identities = 46/73 (63%), Positives = 57/73 (78%)
Frame = -1
Query: 219 AMARREEKLRCTKEPFIEDVGPRRIKSIKFSAFSGEEIRKLAEVQVWNNRIYGADLRPVQ 40
A R EEKLRCTKEPF++D P+RIKS++F SG+EIR+ A QVWN RIY + L+PV
Sbjct: 3 AQWRPEEKLRCTKEPFVDDASPQRIKSMRFCTLSGKEIRQSAAAQVWNTRIYDSSLKPVP 62
Query: 39 NGLLDTRMGAANK 1
NGLLD RMGA++K
Sbjct: 63 NGLLDPRMGASDK 75
>ref|XP_004251448.1| PREDICTED: DNA-directed RNA polymerase III subunit rpc1-like
[Solanum lycopersicum]
Length = 1390
Score = 89.0 bits (219), Expect = 1e-15
Identities = 44/72 (61%), Positives = 54/72 (75%)
Frame = -1
Query: 216 MARREEKLRCTKEPFIEDVGPRRIKSIKFSAFSGEEIRKLAEVQVWNNRIYGADLRPVQN 37
M R +E L+ TK+P+IEDVGPR+IKSIKFS FS EI KLAEV+V+ Y + +P+QN
Sbjct: 1 MNRAQESLQVTKQPYIEDVGPRKIKSIKFSLFSESEILKLAEVEVYLGLYYESTKKPIQN 60
Query: 36 GLLDTRMGAANK 1
GLLD RMG NK
Sbjct: 61 GLLDPRMGPPNK 72
>emb|CBI16226.3| unnamed protein product [Vitis vinifera]
Length = 1819
Score = 87.0 bits (214), Expect = 5e-15
Identities = 40/68 (58%), Positives = 53/68 (77%)
Frame = -1
Query: 204 EEKLRCTKEPFIEDVGPRRIKSIKFSAFSGEEIRKLAEVQVWNNRIYGADLRPVQNGLLD 25
++ ++ TKEP+IEDVGPR+I+SI+F+ FS EI K AEVQVW Y A+ +P++NGLLD
Sbjct: 2 KDGIQFTKEPYIEDVGPRKIESIRFALFSESEISKAAEVQVWRGVYYDANRKPIENGLLD 61
Query: 24 TRMGAANK 1
RMG ANK
Sbjct: 62 PRMGPANK 69
>ref|XP_002284657.1| PREDICTED: DNA-directed RNA polymerase III subunit rpc1-like [Vitis
vinifera]
Length = 1383
Score = 87.0 bits (214), Expect = 5e-15
Identities = 40/68 (58%), Positives = 53/68 (77%)
Frame = -1
Query: 204 EEKLRCTKEPFIEDVGPRRIKSIKFSAFSGEEIRKLAEVQVWNNRIYGADLRPVQNGLLD 25
++ ++ TKEP+IEDVGPR+I+SI+F+ FS EI K AEVQVW Y A+ +P++NGLLD
Sbjct: 2 KDGIQFTKEPYIEDVGPRKIESIRFALFSESEISKAAEVQVWRGVYYDANRKPIENGLLD 61
Query: 24 TRMGAANK 1
RMG ANK
Sbjct: 62 PRMGPANK 69
>gb|EMT07732.1| DNA-directed RNA polymerase III subunit RPC1 [Aegilops tauschii]
Length = 150
Score = 86.3 bits (212), Expect = 9e-15
Identities = 40/67 (59%), Positives = 50/67 (74%)
Frame = -1
Query: 201 EKLRCTKEPFIEDVGPRRIKSIKFSAFSGEEIRKLAEVQVWNNRIYGADLRPVQNGLLDT 22
+KLRCTKEP+++D G RIKS++FS FSG E+R AE V+N IY + +P GLLDT
Sbjct: 13 QKLRCTKEPYVDDDGTHRIKSMRFSTFSGGEVRTSAEAHVYNGWIYDENRKPAPGGLLDT 72
Query: 21 RMGAANK 1
RMGAANK
Sbjct: 73 RMGAANK 79
>ref|XP_006365152.1| PREDICTED: DNA-directed RNA polymerase III subunit rpc1-like
isoform X2 [Solanum tuberosum]
Length = 1243
Score = 84.3 bits (207), Expect = 3e-14
Identities = 42/72 (58%), Positives = 52/72 (72%)
Frame = -1
Query: 216 MARREEKLRCTKEPFIEDVGPRRIKSIKFSAFSGEEIRKLAEVQVWNNRIYGADLRPVQN 37
M R + L+ TK+P+IEDVGPR+IKSIKFS FS EI K AEV+V+ Y + +P+QN
Sbjct: 1 MKRIQNSLQVTKQPYIEDVGPRKIKSIKFSLFSESEILKSAEVEVYLGLYYESTKKPIQN 60
Query: 36 GLLDTRMGAANK 1
GLLD RMG NK
Sbjct: 61 GLLDPRMGPPNK 72
>ref|XP_006365151.1| PREDICTED: DNA-directed RNA polymerase III subunit rpc1-like
isoform X1 [Solanum tuberosum]
Length = 1394
Score = 84.3 bits (207), Expect = 3e-14
Identities = 42/72 (58%), Positives = 52/72 (72%)
Frame = -1
Query: 216 MARREEKLRCTKEPFIEDVGPRRIKSIKFSAFSGEEIRKLAEVQVWNNRIYGADLRPVQN 37
M R + L+ TK+P+IEDVGPR+IKSIKFS FS EI K AEV+V+ Y + +P+QN
Sbjct: 1 MKRIQNSLQVTKQPYIEDVGPRKIKSIKFSLFSESEILKSAEVEVYLGLYYESTKKPIQN 60
Query: 36 GLLDTRMGAANK 1
GLLD RMG NK
Sbjct: 61 GLLDPRMGPPNK 72
>gb|EXB53230.1| DNA-directed RNA polymerase III subunit RPC1 [Morus notabilis]
Length = 232
Score = 84.0 bits (206), Expect = 4e-14
Identities = 38/62 (61%), Positives = 49/62 (79%)
Frame = -1
Query: 186 TKEPFIEDVGPRRIKSIKFSAFSGEEIRKLAEVQVWNNRIYGADLRPVQNGLLDTRMGAA 7
TK+PF+EDVGPRRIKS++F+ S EI K+AEVQVW + Y + +PV++GLLD RMG A
Sbjct: 14 TKQPFVEDVGPRRIKSMQFTVQSASEISKMAEVQVWKGQYYDPNRKPVEDGLLDPRMGPA 73
Query: 6 NK 1
NK
Sbjct: 74 NK 75
>ref|XP_006400888.1| hypothetical protein EUTSA_v10012446mg [Eutrema salsugineum]
gi|557101978|gb|ESQ42341.1| hypothetical protein
EUTSA_v10012446mg [Eutrema salsugineum]
Length = 1375
Score = 82.8 bits (203), Expect = 1e-13
Identities = 39/66 (59%), Positives = 48/66 (72%)
Frame = -1
Query: 198 KLRCTKEPFIEDVGPRRIKSIKFSAFSGEEIRKLAEVQVWNNRIYGADLRPVQNGLLDTR 19
++ TK+P+IEDVGP +IKSI FS FS EI K AEVQVW N Y ++ +PV+ GLLD R
Sbjct: 6 EIEFTKQPYIEDVGPLKIKSINFSIFSDLEIMKAAEVQVWRNNYYESNFKPVEGGLLDPR 65
Query: 18 MGAANK 1
MG NK
Sbjct: 66 MGPPNK 71
>ref|XP_003539102.1| PREDICTED: DNA-directed RNA polymerase III subunit rpc1-like
[Glycine max]
Length = 1391
Score = 82.8 bits (203), Expect = 1e-13
Identities = 39/69 (56%), Positives = 48/69 (69%)
Frame = -1
Query: 207 REEKLRCTKEPFIEDVGPRRIKSIKFSAFSGEEIRKLAEVQVWNNRIYGADLRPVQNGLL 28
R E + TKEPF+ED GPR+IK++KFS S EI K+AEVQVW Y + +P+ GLL
Sbjct: 5 RTEGITFTKEPFMEDTGPRKIKNMKFSTLSESEISKIAEVQVWKGSYYDSFKKPIHGGLL 64
Query: 27 DTRMGAANK 1
D RMG ANK
Sbjct: 65 DPRMGPANK 73
>ref|XP_004148776.1| PREDICTED: DNA-directed RNA polymerase III subunit rpc1-like
[Cucumis sativus]
Length = 1400
Score = 82.4 bits (202), Expect = 1e-13
Identities = 40/67 (59%), Positives = 49/67 (73%)
Frame = -1
Query: 201 EKLRCTKEPFIEDVGPRRIKSIKFSAFSGEEIRKLAEVQVWNNRIYGADLRPVQNGLLDT 22
E L TK+P+IEDVGPR+IKS++F+ FSG EI KLAEVQV+ Y +P+ GLLD
Sbjct: 7 EGLVFTKQPYIEDVGPRKIKSMQFTTFSGAEISKLAEVQVYKGLYYDTTRKPIDGGLLDP 66
Query: 21 RMGAANK 1
RMG ANK
Sbjct: 67 RMGPANK 73
>ref|XP_002864665.1| hypothetical protein ARALYDRAFT_496142 [Arabidopsis lyrata subsp.
lyrata] gi|297310500|gb|EFH40924.1| hypothetical protein
ARALYDRAFT_496142 [Arabidopsis lyrata subsp. lyrata]
Length = 1376
Score = 82.4 bits (202), Expect = 1e-13
Identities = 38/66 (57%), Positives = 47/66 (71%)
Frame = -1
Query: 198 KLRCTKEPFIEDVGPRRIKSIKFSAFSGEEIRKLAEVQVWNNRIYGADLRPVQNGLLDTR 19
++ TK+P+IEDVGP +IKSI FS S E+ K AEVQVW N Y +L+P +NGLLD R
Sbjct: 6 EIEFTKQPYIEDVGPLKIKSINFSVLSDLEVMKAAEVQVWKNNYYETNLKPYENGLLDAR 65
Query: 18 MGAANK 1
MG NK
Sbjct: 66 MGPPNK 71
>gb|ESW04135.1| hypothetical protein PHAVU_011G070100g [Phaseolus vulgaris]
Length = 1392
Score = 82.0 bits (201), Expect = 2e-13
Identities = 39/69 (56%), Positives = 47/69 (68%)
Frame = -1
Query: 207 REEKLRCTKEPFIEDVGPRRIKSIKFSAFSGEEIRKLAEVQVWNNRIYGADLRPVQNGLL 28
R E + TKEPF+ED GPR+IK++KFS S EI KL EVQVW Y + +P+ GLL
Sbjct: 5 RTEGITFTKEPFMEDAGPRKIKNMKFSMLSDSEISKLGEVQVWKGSYYDSFKKPIHGGLL 64
Query: 27 DTRMGAANK 1
D RMG ANK
Sbjct: 65 DPRMGPANK 73