BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Zingiber23_contig00035403
         (635 letters)

Database: ./nr 
           37,332,560 sequences; 13,225,080,153 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

ref|NP_001049864.1| Os03g0301400 [Oryza sativa Japonica Group] g...    67   3e-09
ref|XP_006649945.1| PREDICTED: three prime repair exonuclease 2-...    65   2e-08
gb|EEE58895.1| hypothetical protein OsJ_10524 [Oryza sativa Japo...    60   4e-07
gb|ACN27500.1| unknown [Zea mays] gi|224030613|gb|ACN34382.1| un...    56   8e-06
ref|NP_001131224.1| uncharacterized protein LOC100192533 [Zea ma...    56   8e-06
gb|ACG42491.1| DNA polymerase III subunit epsilon [Zea mays]           56   1e-05

>ref|NP_001049864.1| Os03g0301400 [Oryza sativa Japonica Group]
           gi|108707691|gb|ABF95486.1| exonuclease family protein,
           expressed [Oryza sativa Japonica Group]
           gi|113548335|dbj|BAF11778.1| Os03g0301400 [Oryza sativa
           Japonica Group] gi|215678888|dbj|BAG95325.1| unnamed
           protein product [Oryza sativa Japonica Group]
          Length = 313

 Score = 67.4 bits (163), Expect = 3e-09
 Identities = 59/164 (35%), Positives = 80/164 (48%), Gaps = 2/164 (1%)
 Frame = +1

Query: 145 VFFGNLHQLLNNLGSNSTIKFLK--LQYCTCKQFHVWRYNRQNSAPVNEARFGLQSSIAT 318
           +F GN HQL N++GS S+   LK  L Y T  Q      NR N                 
Sbjct: 6   IFCGNFHQLRNSIGSCSSTGLLKCGLIYRTVLQ------NRGNKT--------------- 44

Query: 319 CNNPLSNLQNELVSVRAWSSKTTRLKSRKLSTNRATPRKIEKLIVRASTKNSKNQTELLQ 498
              P+S             +++TR +S++   +  T R +    V +S +  K Q++L  
Sbjct: 45  --RPIST---------TILARSTRKESKQ---SFKTSRHLHSESVESSIEVLK-QSDLEH 89

Query: 499 PKTVNCNGFQQSTAVRKAIDWPATILVFDIETTGFSRQYERIIE 630
            K++ C    Q  +  K  DWPATILVFDIETTGFSR+YERIIE
Sbjct: 90  LKSLQCYNIPQKVSGVKT-DWPATILVFDIETTGFSRRYERIIE 132


>ref|XP_006649945.1| PREDICTED: three prime repair exonuclease 2-like [Oryza
           brachyantha]
          Length = 310

 Score = 64.7 bits (156), Expect = 2e-08
 Identities = 59/168 (35%), Positives = 84/168 (50%), Gaps = 1/168 (0%)
 Frame = +1

Query: 133 MSL-SVFFGNLHQLLNNLGSNSTIKFLKLQYCTCKQFHVWRYNRQNSAPVNEARFGLQSS 309
           MSL S+F GN H L N++G++   +FLK          ++R   QN    N+ R     S
Sbjct: 1   MSLYSIFCGNFHLLRNSIGNSCCSRFLKYGL-------IYRAVLQNGG--NKTRL---IS 48

Query: 310 IATCNNPLSNLQNELVSVRAWSSKTTRLKSRKLSTNRATPRKIEKLIVRASTKNSKNQTE 489
              C                     TR +S++  +N    R +    V +S +  K Q++
Sbjct: 49  TIVC---------------------TRKESKQSFSNS---RHLHGESVESSIEVLK-QSD 83

Query: 490 LLQPKTVNCNGFQQSTAVRKAIDWPATILVFDIETTGFSRQYERIIEI 633
           L   K++ C   Q+  +  KA DWPATILVFDIETTGFSR+++RIIEI
Sbjct: 84  LQHLKSLQCYDGQEKVSGVKA-DWPATILVFDIETTGFSRRHDRIIEI 130


>gb|EEE58895.1| hypothetical protein OsJ_10524 [Oryza sativa Japonica Group]
          Length = 901

 Score = 60.5 bits (145), Expect = 4e-07
 Identities = 38/85 (44%), Positives = 54/85 (63%)
 Frame = +1

Query: 376 SKTTRLKSRKLSTNRATPRKIEKLIVRASTKNSKNQTELLQPKTVNCNGFQQSTAVRKAI 555
           +++TR +S++   +  T R +    V +S +  K Q++L   K++ C    Q  +  K  
Sbjct: 641 ARSTRKESKQ---SFKTSRHLHSESVESSIEVLK-QSDLEHLKSLQCYNIPQKVSGVKT- 695

Query: 556 DWPATILVFDIETTGFSRQYERIIE 630
           DWPATILVFDIETTGFSR+YERIIE
Sbjct: 696 DWPATILVFDIETTGFSRRYERIIE 720


>gb|ACN27500.1| unknown [Zea mays] gi|224030613|gb|ACN34382.1| unknown [Zea mays]
           gi|414866403|tpg|DAA44960.1| TPA: DNA polymerase III
           subunit epsilon isoform 1 [Zea mays]
           gi|414866404|tpg|DAA44961.1| TPA: DNA polymerase III
           subunit epsilon isoform 2 [Zea mays]
           gi|414866405|tpg|DAA44962.1| TPA: DNA polymerase III
           subunit epsilon isoform 3 [Zea mays]
          Length = 315

 Score = 56.2 bits (134), Expect = 8e-06
 Identities = 44/141 (31%), Positives = 74/141 (52%)
 Frame = +1

Query: 208 LKLQYCTCKQFHVWRYNRQNSAPVNEARFGLQSSIATCNNPLSNLQNELVSVRAWSSKTT 387
           + L    C +FH+ R +  ++  V   ++  +    T  +  S +           +++T
Sbjct: 1   MSLSSICCAKFHLLRNSIGDTCSVRWLKYHSRLIYETFLS--SRIHQSRPPSTTVLARST 58

Query: 388 RLKSRKLSTNRATPRKIEKLIVRASTKNSKNQTELLQPKTVNCNGFQQSTAVRKAIDWPA 567
           R  S++  +N    R +    V +S +  K Q+EL Q K+++C   ++  +  K  +WPA
Sbjct: 59  RKGSKQSFSNG---RHLHSKSVESSIEVFK-QSELEQLKSLHCYNVEEEFSEVKT-EWPA 113

Query: 568 TILVFDIETTGFSRQYERIIE 630
           TILVFDIETTGFSR+ +RIIE
Sbjct: 114 TILVFDIETTGFSRRDDRIIE 134


>ref|NP_001131224.1| uncharacterized protein LOC100192533 [Zea mays]
           gi|194690922|gb|ACF79545.1| unknown [Zea mays]
          Length = 315

 Score = 56.2 bits (134), Expect = 8e-06
 Identities = 44/141 (31%), Positives = 74/141 (52%)
 Frame = +1

Query: 208 LKLQYCTCKQFHVWRYNRQNSAPVNEARFGLQSSIATCNNPLSNLQNELVSVRAWSSKTT 387
           + L    C +FH+ R +  ++  V   ++  +    T  +  S +           +++T
Sbjct: 1   MSLSSICCAKFHLLRNSIGDTCSVRWLKYHSRLIYETFLS--SRIHQSRPPSTTVLARST 58

Query: 388 RLKSRKLSTNRATPRKIEKLIVRASTKNSKNQTELLQPKTVNCNGFQQSTAVRKAIDWPA 567
           R  S++  +N    R +    V +S +  K Q+EL Q K+++C   ++  +  K  +WPA
Sbjct: 59  RKGSKQSFSNG---RHLHSKSVESSIEVFK-QSELEQLKSLHCYNVEEEFSEVKT-EWPA 113

Query: 568 TILVFDIETTGFSRQYERIIE 630
           TILVFDIETTGFSR+ +RIIE
Sbjct: 114 TILVFDIETTGFSRRDDRIIE 134


>gb|ACG42491.1| DNA polymerase III subunit epsilon [Zea mays]
          Length = 315

 Score = 55.8 bits (133), Expect = 1e-05
 Identities = 36/85 (42%), Positives = 55/85 (64%)
 Frame = +1

Query: 376 SKTTRLKSRKLSTNRATPRKIEKLIVRASTKNSKNQTELLQPKTVNCNGFQQSTAVRKAI 555
           +++TR  S++  +N    R +    V +S +  K Q+EL Q K+++C   ++  +  K  
Sbjct: 55  ARSTRKGSKQSFSNG---RHLHSKSVESSIEVFK-QSELEQLKSLHCYNVEEEFSEVKT- 109

Query: 556 DWPATILVFDIETTGFSRQYERIIE 630
           +WPATILVFDIETTGFSR+ +RIIE
Sbjct: 110 EWPATILVFDIETTGFSRRDDRIIE 134