BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Zingiber23_contig00034988
         (1085 letters)

Database: ./nr 
           37,332,560 sequences; 13,225,080,153 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gb|ACJ63313.1| RNA polymerase I large subunit [Drimys winteri]        501   e-139
ref|XP_006850181.1| hypothetical protein AMTR_s00022p00245030 [A...   493   e-137
gb|ACJ63312.1| RNA polymerase I large subunit [Ceratophyllum dem...   493   e-137
gb|AAS55440.1| RNA polymerase I largest subunit [Amborella trich...   487   e-135
gb|AAS55443.1| RNA polymerase I largest subunit [Cycas revoluta]      483   e-134
ref|XP_003559192.1| PREDICTED: DNA-directed RNA polymerase I sub...   475   e-131
gb|AAS55438.1| RNA polymerase I largest subunit [Welwitschia mir...   475   e-131
gb|AAS55442.1| RNA polymerase I largest subunit [Pinus nigra]         474   e-131
gb|AAS55436.1| RNA polymerase I largest subunit [Podocarpus macr...   471   e-130
gb|AAS55444.1| RNA polymerase I largest subunit [Zamia muricata]      470   e-130
gb|ACJ63314.1| RNA polymerase I large subunit [Illicium parviflo...   467   e-129
gb|AAS55445.1| RNA polymerase I largest subunit [Ginkgo biloba]       464   e-128
gb|ACJ63315.1| RNA polymerase I large subunit [Liriodendron tuli...   461   e-127
ref|XP_004967186.1| PREDICTED: DNA-directed RNA polymerase I sub...   457   e-126
emb|CBI29879.3| unnamed protein product [Vitis vinifera]              456   e-126
ref|XP_002277555.1| PREDICTED: DNA-directed RNA polymerase I sub...   456   e-126
emb|CAN70028.1| hypothetical protein VITISV_029145 [Vitis vinifera]   456   e-126
gb|ACJ63316.1| RNA polymerase I large subunit [Nymphaea odorata]      449   e-124
gb|AAS55437.1| RNA polymerase I largest subunit [Taxus canadensis]    443   e-122
gb|AAS55439.1| RNA polymerase I largest subunit [Ephedra viridis]     440   e-121

>gb|ACJ63313.1| RNA polymerase I large subunit [Drimys winteri]
          Length = 539

 Score =  501 bits (1291), Expect = e-139
 Identities = 251/364 (68%), Positives = 291/364 (79%), Gaps = 3/364 (0%)
 Frame = +3

Query: 3    REEYHQLIY---VSCMPPTSYAQNRYGEKASLSWSENEIQPLPPAIWKPIPLWTGKQVIT 173
            R+EYHQL+Y   V+   P S+   ++G+  S   SE++I+P+ PAIWKP PLWTGKQVIT
Sbjct: 55   RDEYHQLLYSSGVTAAAPRSFI-GKFGKTVSTISSEDDIKPVLPAIWKPRPLWTGKQVIT 113

Query: 174  AILNYVTRGCLPFTIEKKGRIQKEYIGNDSAQLVLHIYNNELIHGMIDKAQFGTYGLVHA 353
             ILN++TRG  PFT++K GRI +EY G ++ ++ L I  NEL+HG+IDKAQFG YGLVH 
Sbjct: 114  TILNHITRGRPPFTVKKTGRIPREYFGINNGEIKLLIQKNELVHGVIDKAQFGKYGLVHT 173

Query: 354  VHELYGPDVAGTLLSVFSRLFTSFLQMHGFTCGVDDLLLKRSSDMERDRILEKSEMLSEE 533
            V ELYG D AG LLSVFSRLFT FLQMHGFTCGVDDLL+ + SD ER   L  +E + E 
Sbjct: 174  VQELYGSDTAGILLSVFSRLFTVFLQMHGFTCGVDDLLIFQQSDRERTMKLGNAEKIGEH 233

Query: 534  VHRRFTRMKDDDKDPMKLQGEIEKVLRGHGESATALLDRMMSNAMNSLTSEINQTLFPSG 713
            VH +F   KD   DP  LQ EIE+VLR +G+SA A LDR+MS+A+N LTSE+N  LFP G
Sbjct: 234  VHSQFVGAKDGGIDPKTLQMEIERVLRSNGDSAIASLDRLMSSALNRLTSEVNNRLFPRG 293

Query: 714  LSKSFLTNCLSLMTATGAKGGLVNMTQISSLLGQQELEGKRVPRMVSGKTLPCFPPWDVS 893
            L K F  NCLSLMT TGAKGGLVN TQISSLLGQQELEGKRVPRMVSGKTLPCFPPWD +
Sbjct: 294  LFKPFPRNCLSLMTTTGAKGGLVNFTQISSLLGQQELEGKRVPRMVSGKTLPCFPPWDCA 353

Query: 894  SRSGGFISDRFLTGLRPQEYYFHCMAGRDGLVDTAIKTSRSGYLQRCLVKNLECLKVSYD 1073
            SR+GGFISDRFL+GLRPQEYYFHCMAGR+GLVDTAIKTSRSGYLQRCL+KNLE LKV YD
Sbjct: 354  SRAGGFISDRFLSGLRPQEYYFHCMAGREGLVDTAIKTSRSGYLQRCLIKNLESLKVCYD 413

Query: 1074 YTVR 1085
            +TVR
Sbjct: 414  HTVR 417


>ref|XP_006850181.1| hypothetical protein AMTR_s00022p00245030 [Amborella trichopoda]
            gi|548853779|gb|ERN11762.1| hypothetical protein
            AMTR_s00022p00245030 [Amborella trichopoda]
          Length = 1600

 Score =  493 bits (1269), Expect = e-137
 Identities = 238/363 (65%), Positives = 296/363 (81%), Gaps = 2/363 (0%)
 Frame = +3

Query: 3    REEYHQLIYVSCMPPTS--YAQNRYGEKASLSWSENEIQPLPPAIWKPIPLWTGKQVITA 176
            +EEYH L+Y +C+   +  +      +K SL  S+ EI+PL PAIWKP PLWTGKQVI+ 
Sbjct: 597  QEEYHHLLYSACVSTVAPDFKHGNLSKKISLVKSDEEIRPLLPAIWKPKPLWTGKQVIST 656

Query: 177  ILNYVTRGCLPFTIEKKGRIQKEYIGNDSAQLVLHIYNNELIHGMIDKAQFGTYGLVHAV 356
            IL++VTRG  PFT+++ GRI   Y G  + +  + ++ NEL+HG+IDKAQFG +GLVHAV
Sbjct: 657  ILDHVTRGQPPFTVKRAGRIPAGYFGKKNGEYKVLVHKNELVHGVIDKAQFGKFGLVHAV 716

Query: 357  HELYGPDVAGTLLSVFSRLFTSFLQMHGFTCGVDDLLLKRSSDMERDRILEKSEMLSEEV 536
            HELYG   AG L SVF+RLFT++LQMHGFTCGVDDLL+++ ++M+R R L++SE + + V
Sbjct: 717  HELYGASAAGRLFSVFTRLFTAYLQMHGFTCGVDDLLVRQCAEMDRRRKLDESETIGDHV 776

Query: 537  HRRFTRMKDDDKDPMKLQGEIEKVLRGHGESATALLDRMMSNAMNSLTSEINQTLFPSGL 716
            H  F   KD + DP+++Q  IEK++RG GESA A LDRMMS+A+N LTSE+N +LFP GL
Sbjct: 777  HSWFIGAKDAEMDPIRMQAAIEKLVRGKGESAIARLDRMMSSALNRLTSEVNNSLFPEGL 836

Query: 717  SKSFLTNCLSLMTATGAKGGLVNMTQISSLLGQQELEGKRVPRMVSGKTLPCFPPWDVSS 896
            SKSF +NCLSLMT++GAKGGLVN TQISSLLGQQELEGKRVPRMVSGKTLPCF PWD ++
Sbjct: 837  SKSFPSNCLSLMTSSGAKGGLVNFTQISSLLGQQELEGKRVPRMVSGKTLPCFLPWDSAA 896

Query: 897  RSGGFISDRFLTGLRPQEYYFHCMAGRDGLVDTAIKTSRSGYLQRCLVKNLECLKVSYDY 1076
            R+GGFISDRFL GLRPQEYYFHCMAGR+GLVDTAIKT+RSGYLQR L+KNLECL+V+YD+
Sbjct: 897  RAGGFISDRFLNGLRPQEYYFHCMAGREGLVDTAIKTARSGYLQRRLMKNLECLRVNYDH 956

Query: 1077 TVR 1085
            TVR
Sbjct: 957  TVR 959


>gb|ACJ63312.1| RNA polymerase I large subunit [Ceratophyllum demersum]
          Length = 538

 Score =  493 bits (1268), Expect = e-137
 Identities = 243/363 (66%), Positives = 288/363 (79%), Gaps = 2/363 (0%)
 Frame = +3

Query: 3    REEYHQLIYVSCMPPTSYA--QNRYGEKASLSWSENEIQPLPPAIWKPIPLWTGKQVITA 176
            REEYHQL+Y SC+   + +  Q   G+K S   SE+EI+P+ PAIWKP+PLWTGKQVIT+
Sbjct: 55   REEYHQLLYSSCVSANAQSSFQGNSGKKISAIISEDEIEPILPAIWKPVPLWTGKQVITS 114

Query: 177  ILNYVTRGCLPFTIEKKGRIQKEYIGNDSAQLVLHIYNNELIHGMIDKAQFGTYGLVHAV 356
            IL ++TRG  PFT+E  G+I+  Y+G++  +  L I  NELIHG+IDKAQF  YGLVH V
Sbjct: 115  ILCHITRGRQPFTVENCGKIKPNYLGSNVEEKNLLIRKNELIHGVIDKAQFEMYGLVHTV 174

Query: 357  HELYGPDVAGTLLSVFSRLFTSFLQMHGFTCGVDDLLLKRSSDMERDRILEKSEMLSEEV 536
             ELYG + AG LLSVFSRLFT FLQMHGFTCGVDDLL+   SD +R R L++SE +SE+ 
Sbjct: 175  QELYGSNTAGVLLSVFSRLFTVFLQMHGFTCGVDDLLIIPKSDKKRSRRLKQSEKISEDA 234

Query: 537  HRRFTRMKDDDKDPMKLQGEIEKVLRGHGESATALLDRMMSNAMNSLTSEINQTLFPSGL 716
            H  F   K+  +DP+KLQ E+EKVLR HG+ A   LDRMMSNA+  LTS++   L P+GL
Sbjct: 235  HANFLGTKEGSQDPIKLQMELEKVLRRHGDVAVTRLDRMMSNALGELTSKVTNELLPNGL 294

Query: 717  SKSFLTNCLSLMTATGAKGGLVNMTQISSLLGQQELEGKRVPRMVSGKTLPCFPPWDVSS 896
            SK F  NCLSLMT TGAKG +VN  QISSLLGQQELEGKRVPRMVSGKTLPCFPPWD SS
Sbjct: 295  SKPFPKNCLSLMTTTGAKGSMVNFNQISSLLGQQELEGKRVPRMVSGKTLPCFPPWDSSS 354

Query: 897  RSGGFISDRFLTGLRPQEYYFHCMAGRDGLVDTAIKTSRSGYLQRCLVKNLECLKVSYDY 1076
            R+GG+I DR+LTGLRPQEYYFHCMAGR+GLVDTA+KTSRSGYLQRCL+K+LE LKV YD+
Sbjct: 355  RAGGYIGDRYLTGLRPQEYYFHCMAGREGLVDTAVKTSRSGYLQRCLIKSLESLKVCYDH 414

Query: 1077 TVR 1085
            TVR
Sbjct: 415  TVR 417


>gb|AAS55440.1| RNA polymerase I largest subunit [Amborella trichopoda]
          Length = 542

 Score =  487 bits (1253), Expect = e-135
 Identities = 236/363 (65%), Positives = 293/363 (80%), Gaps = 2/363 (0%)
 Frame = +3

Query: 3    REEYHQLIYVSCMPPTS--YAQNRYGEKASLSWSENEIQPLPPAIWKPIPLWTGKQVITA 176
            +EEYH L+Y +C+   +  +      +K SL  S+ EI PL PAIWKP PLWTGKQVI+ 
Sbjct: 57   QEEYHHLLYSACVSTVAPDFKHGNLSKKISLVKSDEEISPLLPAIWKPKPLWTGKQVIST 116

Query: 177  ILNYVTRGCLPFTIEKKGRIQKEYIGNDSAQLVLHIYNNELIHGMIDKAQFGTYGLVHAV 356
            IL++VTRG  PFT+++ GRI   Y G  + +  + ++ NEL+HG+IDKAQFG +GLVHAV
Sbjct: 117  ILDHVTRGQPPFTVKRAGRIPAGYFGKKNGEYKVLVHKNELVHGVIDKAQFGKFGLVHAV 176

Query: 357  HELYGPDVAGTLLSVFSRLFTSFLQMHGFTCGVDDLLLKRSSDMERDRILEKSEMLSEEV 536
            HELYG   AG L SVF+RLFT++LQMHGFTCGVDDLL+++ ++M+R R L++SE + + V
Sbjct: 177  HELYGASAAGRLFSVFTRLFTAYLQMHGFTCGVDDLLVRQCAEMDRRRKLDESETIGDHV 236

Query: 537  HRRFTRMKDDDKDPMKLQGEIEKVLRGHGESATALLDRMMSNAMNSLTSEINQTLFPSGL 716
            H  F   KD + DP+++Q  I K++RG GESA A LDRMMS+A+N LTSE+N +LFP GL
Sbjct: 237  HSWFIGAKDAEMDPIRMQAAIGKLVRGKGESAIARLDRMMSSALNRLTSEVNNSLFPEGL 296

Query: 717  SKSFLTNCLSLMTATGAKGGLVNMTQISSLLGQQELEGKRVPRMVSGKTLPCFPPWDVSS 896
            SKSF +NCLSLMT++GAKGGLVN TQISSLLGQQELEGKRVPRMVSGKTLPCF PWD ++
Sbjct: 297  SKSFPSNCLSLMTSSGAKGGLVNFTQISSLLGQQELEGKRVPRMVSGKTLPCFLPWDSAA 356

Query: 897  RSGGFISDRFLTGLRPQEYYFHCMAGRDGLVDTAIKTSRSGYLQRCLVKNLECLKVSYDY 1076
            R+GG ISDRFL GLRPQEYYFHCMAGR+GLVDTAIKT+RSGYLQR L+KNLECL+V+YD+
Sbjct: 357  RAGGSISDRFLNGLRPQEYYFHCMAGREGLVDTAIKTARSGYLQRRLMKNLECLRVNYDH 416

Query: 1077 TVR 1085
            TVR
Sbjct: 417  TVR 419


>gb|AAS55443.1| RNA polymerase I largest subunit [Cycas revoluta]
          Length = 547

 Score =  483 bits (1242), Expect = e-134
 Identities = 240/363 (66%), Positives = 285/363 (78%), Gaps = 2/363 (0%)
 Frame = +3

Query: 3    REEYHQLIYVSCMPPTS--YAQNRYGEKASLSWSENEIQPLPPAIWKPIPLWTGKQVITA 176
            +++Y  L+Y +C+  T+  + + +   K  +   ++    LPPAIWKP PLWTGKQVITA
Sbjct: 57   KDDYQHLVYSACVSTTAPVFQRGKSCPKIGIVKDDHTFLSLPPAIWKPQPLWTGKQVITA 116

Query: 177  ILNYVTRGCLPFTIEKKGRIQKEYIGNDSAQLVLHIYNNELIHGMIDKAQFGTYGLVHAV 356
            +LNYVTRG  PFT++K GR+  +Y G  S +L + I NNELI G++DKAQFG YGLVH V
Sbjct: 117  LLNYVTRGSPPFTMKKAGRVPGDYWGKSSGELKVIIQNNELICGVLDKAQFGKYGLVHIV 176

Query: 357  HELYGPDVAGTLLSVFSRLFTSFLQMHGFTCGVDDLLLKRSSDMERDRILEKSEMLSEEV 536
             ELYG D AG LLSVFSRLFT +LQMHGFTCGV DLLL   ++  R++ L K+EML + V
Sbjct: 177  QELYGADAAGHLLSVFSRLFTGYLQMHGFTCGVADLLLVPQAEDYREKKLGKAEMLGDTV 236

Query: 537  HRRFTRMKDDDKDPMKLQGEIEKVLRGHGESATALLDRMMSNAMNSLTSEINQTLFPSGL 716
            H +F  +  D  D  +++G+IEK LRG GE A+  LDR+MS+A+N +TSE+N  LFP GL
Sbjct: 237  HSQFIGVDGDCIDLEQMEGDIEKHLRGKGEVASNRLDRLMSSALNRVTSEVNNVLFPKGL 296

Query: 717  SKSFLTNCLSLMTATGAKGGLVNMTQISSLLGQQELEGKRVPRMVSGKTLPCFPPWDVSS 896
             K F +NCLSLMT TGAKGGLVN TQISSLLGQQELEGKRVPRMVSGKTLPCFPPWD  +
Sbjct: 297  LKPFPSNCLSLMTVTGAKGGLVNFTQISSLLGQQELEGKRVPRMVSGKTLPCFPPWDSRA 356

Query: 897  RSGGFISDRFLTGLRPQEYYFHCMAGRDGLVDTAIKTSRSGYLQRCLVKNLECLKVSYDY 1076
            R+GGFISDRFLTGLRPQEYYFHCMAGRDGLVDTAIKTSRSGYLQRCL+KNLECLKV YDY
Sbjct: 357  RAGGFISDRFLTGLRPQEYYFHCMAGRDGLVDTAIKTSRSGYLQRCLIKNLECLKVHYDY 416

Query: 1077 TVR 1085
            TVR
Sbjct: 417  TVR 419


>ref|XP_003559192.1| PREDICTED: DNA-directed RNA polymerase I subunit rpa1-like
            [Brachypodium distachyon]
          Length = 1868

 Score =  475 bits (1223), Expect = e-131
 Identities = 241/372 (64%), Positives = 292/372 (78%), Gaps = 11/372 (2%)
 Frame = +3

Query: 3    REEYHQLIYVSCMPPTSYAQNRYGEKASLSWSENEIQPLPPAIWKPIPLWTGKQVITAIL 182
            REEY QL+Y SC+  T  +  + G++ S+    + ++ LPPAI KP PLWTGKQVIT IL
Sbjct: 867  REEYSQLVYGSCVSSTR-SPCQSGKRVSVMKDGDILELLPPAILKPKPLWTGKQVITTIL 925

Query: 183  NYVTRGCLPFTIEKKGRIQKEYI-----------GNDSAQLVLHIYNNELIHGMIDKAQF 329
            N++T+G  PFT+EKKG+I  +Y+             DS Q VL+I++NELI GMIDK QF
Sbjct: 926  NHLTKGHPPFTVEKKGKIPVKYLIPKERHGDKDNAKDSEQ-VLYIHDNELIKGMIDKDQF 984

Query: 330  GTYGLVHAVHELYGPDVAGTLLSVFSRLFTSFLQMHGFTCGVDDLLLKRSSDMERDRILE 509
            G YG+VH V+ELYG + AG LLS+FSRLFT FLQ+HGFTCG+DDLLL + SD +R   L 
Sbjct: 985  GNYGIVHTVYELYGAETAGRLLSIFSRLFTLFLQLHGFTCGIDDLLLFQESDKQRTETLM 1044

Query: 510  KSEMLSEEVHRRFTRMKDDDKDPMKLQGEIEKVLRGHGESATALLDRMMSNAMNSLTSEI 689
             SE  SEEVHR+FT   D D+DP+KLQ E+EKV+R  GESAT  LD+MM +A+N L SE+
Sbjct: 1045 TSEKCSEEVHRKFTCAGDYDEDPLKLQMEVEKVVRRIGESATDTLDKMMLSALNGLQSEV 1104

Query: 690  NQTLFPSGLSKSFLTNCLSLMTATGAKGGLVNMTQISSLLGQQELEGKRVPRMVSGKTLP 869
            N+ LFP GL K F  NCL+LMTATGAKGG VNMTQI+SLLG Q+LEG RVPRM+SGK+LP
Sbjct: 1105 NRRLFPYGLQKPFPRNCLTLMTATGAKGGEVNMTQITSLLGSQDLEGARVPRMISGKSLP 1164

Query: 870  CFPPWDVSSRSGGFISDRFLTGLRPQEYYFHCMAGRDGLVDTAIKTSRSGYLQRCLVKNL 1049
            CFPPWD SSR+GGF+SDRFLTGLRPQEYYFHCMAGR+GL+DTA+KTSRSGYLQRCLVK+L
Sbjct: 1165 CFPPWDTSSRAGGFVSDRFLTGLRPQEYYFHCMAGRNGLIDTAVKTSRSGYLQRCLVKSL 1224

Query: 1050 ECLKVSYDYTVR 1085
            E L V+YD+TVR
Sbjct: 1225 ESLFVAYDHTVR 1236


>gb|AAS55438.1| RNA polymerase I largest subunit [Welwitschia mirabilis]
          Length = 543

 Score =  475 bits (1222), Expect = e-131
 Identities = 234/363 (64%), Positives = 284/363 (78%), Gaps = 2/363 (0%)
 Frame = +3

Query: 3    REEYHQLIYVSCMPPTS--YAQNRYGEKASLSWSENEIQPLPPAIWKPIPLWTGKQVITA 176
            REEY  L+Y +C+  +S  Y   +   K ++   E+   PLPPAIWKP PLWTGKQVIT 
Sbjct: 57   REEYQNLVYTACVSSSSPFYRYAKDCPKVTIEKDESSFVPLPPAIWKPNPLWTGKQVITT 116

Query: 177  ILNYVTRGCLPFTIEKKGRIQKEYIGNDSAQLVLHIYNNELIHGMIDKAQFGTYGLVHAV 356
            IL+++T+G LPF+ +K GR+  +Y G DS ++ + I +NELI G+IDKAQFG YGLVH V
Sbjct: 117  ILDHITKGTLPFSSKKAGRVPPDYWGRDSGEIEVLIRDNELICGVIDKAQFGKYGLVHIV 176

Query: 357  HELYGPDVAGTLLSVFSRLFTSFLQMHGFTCGVDDLLLKRSSDMERDRILEKSEMLSEEV 536
            HELYG D AG LLSVFSRLFT+FLQMHGFTCG  DLLL   ++ ER + LEK++ L ++V
Sbjct: 177  HELYGADAAGRLLSVFSRLFTAFLQMHGFTCGAVDLLLVPKAENERRKKLEKAKKLGDKV 236

Query: 537  HRRFTRMKDDDKDPMKLQGEIEKVLRGHGESATALLDRMMSNAMNSLTSEINQTLFPSGL 716
            H +F  +   +    +++ EIEK+LR  GE+A+A LDR+MS+A+N +TS++N +LFP GL
Sbjct: 237  HLQFLGLSGQELGEGQMEEEIEKILRSKGETASARLDRLMSSALNGVTSDVNNSLFPKGL 296

Query: 717  SKSFLTNCLSLMTATGAKGGLVNMTQISSLLGQQELEGKRVPRMVSGKTLPCFPPWDVSS 896
               F  NCLSLMT TGAKGG+VN TQISSLLGQQELEGKRVPRMVSGKTLPCF PWD S 
Sbjct: 297  LVPFPKNCLSLMTTTGAKGGMVNFTQISSLLGQQELEGKRVPRMVSGKTLPCFSPWDSSP 356

Query: 897  RSGGFISDRFLTGLRPQEYYFHCMAGRDGLVDTAIKTSRSGYLQRCLVKNLECLKVSYDY 1076
            R+GGFISDRFLTGLR QEYYFHCMAGRDGLVDTA+KTSRSGYLQRCL+KNLECL V YD+
Sbjct: 357  RAGGFISDRFLTGLRLQEYYFHCMAGRDGLVDTAVKTSRSGYLQRCLIKNLECLTVFYDH 416

Query: 1077 TVR 1085
            TVR
Sbjct: 417  TVR 419


>gb|AAS55442.1| RNA polymerase I largest subunit [Pinus nigra]
          Length = 547

 Score =  474 bits (1220), Expect = e-131
 Identities = 238/363 (65%), Positives = 281/363 (77%), Gaps = 2/363 (0%)
 Frame = +3

Query: 3    REEYHQLIYVSCMPPTS--YAQNRYGEKASLSWSENEIQPLPPAIWKPIPLWTGKQVITA 176
            +EEY  L+Y +C+   +  + + +   K  +   E+    LPP I KP PLWTGKQVIT 
Sbjct: 50   KEEYQNLVYTACVSNAAPIFQRGKSCPKVGVVKDEHAFLSLPPTILKPEPLWTGKQVITT 109

Query: 177  ILNYVTRGCLPFTIEKKGRIQKEYIGNDSAQLVLHIYNNELIHGMIDKAQFGTYGLVHAV 356
            +L+Y+T+G  PFT++K GR+  +Y G  S +L + I NNELI G+IDKAQFG YG+VH V
Sbjct: 110  VLHYITKGRPPFTVKKSGRVPGDYWGKSSGELEVLIQNNELICGVIDKAQFGKYGMVHIV 169

Query: 357  HELYGPDVAGTLLSVFSRLFTSFLQMHGFTCGVDDLLLKRSSDMERDRILEKSEMLSEEV 536
             ELYG D AG LLSVFSRLFT +LQMHGFTCGV DLLL   ++ +R + LEKSE L +++
Sbjct: 170  QELYGADAAGHLLSVFSRLFTGYLQMHGFTCGVVDLLLVPQAEDDRKKKLEKSEKLGDKI 229

Query: 537  HRRFTRMKDDDKDPMKLQGEIEKVLRGHGESATALLDRMMSNAMNSLTSEINQTLFPSGL 716
            H +F      D D M ++ EIEKVLR  GE A++ LDR+MS+A+N +TSE+N +LFP GL
Sbjct: 230  HLQFLGGDRADIDVMCIEEEIEKVLRTKGEVASSRLDRLMSSALNRITSEVNNSLFPKGL 289

Query: 717  SKSFLTNCLSLMTATGAKGGLVNMTQISSLLGQQELEGKRVPRMVSGKTLPCFPPWDVSS 896
             K F  NCLSLMT TGAKGGLVN TQISSLLGQQELEGKRVPRMVSGKTLPCFPPWD  S
Sbjct: 290  LKPFPGNCLSLMTMTGAKGGLVNFTQISSLLGQQELEGKRVPRMVSGKTLPCFPPWDSRS 349

Query: 897  RSGGFISDRFLTGLRPQEYYFHCMAGRDGLVDTAIKTSRSGYLQRCLVKNLECLKVSYDY 1076
            R+GGFISDRFLTGLRPQEYYFHCMAGRDGLVDTAIKTSRSGYLQRCL+KNLECLKV YDY
Sbjct: 350  RAGGFISDRFLTGLRPQEYYFHCMAGRDGLVDTAIKTSRSGYLQRCLIKNLECLKVYYDY 409

Query: 1077 TVR 1085
            TVR
Sbjct: 410  TVR 412


>gb|AAS55436.1| RNA polymerase I largest subunit [Podocarpus macrophyllus]
          Length = 550

 Score =  471 bits (1211), Expect = e-130
 Identities = 228/363 (62%), Positives = 285/363 (78%), Gaps = 2/363 (0%)
 Frame = +3

Query: 3    REEYHQLIYVSCMPPTSYAQNRYGEKASLSWSENEIQ--PLPPAIWKPIPLWTGKQVITA 176
            +EEY  L+Y +C+  ++    R      +   E+++    LPP IW+P PLWTGKQVIT 
Sbjct: 57   KEEYQHLVYNACVSSSAPVYQRGMSSPKIGIVEDDLVFLSLPPTIWRPKPLWTGKQVITT 116

Query: 177  ILNYVTRGCLPFTIEKKGRIQKEYIGNDSAQLVLHIYNNELIHGMIDKAQFGTYGLVHAV 356
            +LN++T+G   FT+ K G++  +Y G +S +L + I NNEL+ G++DKAQFG YGLVH V
Sbjct: 117  VLNHITKGRPRFTMNKSGKVPGDYWGRNSGELDVLIQNNELVCGVVDKAQFGKYGLVHVV 176

Query: 357  HELYGPDVAGTLLSVFSRLFTSFLQMHGFTCGVDDLLLKRSSDMERDRILEKSEMLSEEV 536
             EL+G +VAG LLS+FSRLFT +LQMHGFTCG+ DLLL   ++  R++ILEKSE L ++V
Sbjct: 177  QELFGANVAGHLLSIFSRLFTGYLQMHGFTCGIADLLLIPQAEDGREKILEKSEKLGDKV 236

Query: 537  HRRFTRMKDDDKDPMKLQGEIEKVLRGHGESATALLDRMMSNAMNSLTSEINQTLFPSGL 716
            H +F     D  D + L  +IEKVLR  G++A+A LDR+MS+A+N +TS++N ++FP GL
Sbjct: 237  HLQFLGGDQDRTDLLNLGEDIEKVLRNKGDAASARLDRLMSSALNRITSDVNNSIFPKGL 296

Query: 717  SKSFLTNCLSLMTATGAKGGLVNMTQISSLLGQQELEGKRVPRMVSGKTLPCFPPWDVSS 896
             KSF +NCLSLMT +GAKGGLVN TQISSLLGQQELEGKRVPRM+SGKTLPCFPPWD  +
Sbjct: 297  LKSFPSNCLSLMTTSGAKGGLVNFTQISSLLGQQELEGKRVPRMISGKTLPCFPPWDTRA 356

Query: 897  RSGGFISDRFLTGLRPQEYYFHCMAGRDGLVDTAIKTSRSGYLQRCLVKNLECLKVSYDY 1076
            R+GGFISDRFLTGLRPQEYYFHCMAGRDGLVDTA+KTSRSGYLQRCL+KNLECLKV YDY
Sbjct: 357  RAGGFISDRFLTGLRPQEYYFHCMAGRDGLVDTAVKTSRSGYLQRCLIKNLECLKVYYDY 416

Query: 1077 TVR 1085
            TVR
Sbjct: 417  TVR 419


>gb|AAS55444.1| RNA polymerase I largest subunit [Zamia muricata]
          Length = 551

 Score =  470 bits (1209), Expect = e-130
 Identities = 234/363 (64%), Positives = 278/363 (76%), Gaps = 2/363 (0%)
 Frame = +3

Query: 3    REEYHQLIYVSCMP--PTSYAQNRYGEKASLSWSENEIQPLPPAIWKPIPLWTGKQVITA 176
            +++Y  L+Y +C+   P  + + +   K  +   +     LPPAIWKP PLWTGKQVIT 
Sbjct: 57   KDDYQHLVYSACVSTTPPVFQRAKSCPKIGIVKDDYSFLSLPPAIWKPQPLWTGKQVITT 116

Query: 177  ILNYVTRGCLPFTIEKKGRIQKEYIGNDSAQLVLHIYNNELIHGMIDKAQFGTYGLVHAV 356
            +LNYVT+G  PFT++K G++  +Y G  S +L   I NNELI G+IDKAQFG YGLVH V
Sbjct: 117  VLNYVTKGHPPFTMKKAGKVPGDYWGKSSGELKAVIQNNELICGVIDKAQFGKYGLVHTV 176

Query: 357  HELYGPDVAGTLLSVFSRLFTSFLQMHGFTCGVDDLLLKRSSDMERDRILEKSEMLSEEV 536
             ELYG   AG LLSVFSRLFT +LQMHGFTCGV DLLL   ++ +R++ LEKSE L + V
Sbjct: 177  QELYGAGTAGHLLSVFSRLFTGYLQMHGFTCGVADLLLVPQAEDDREKKLEKSETLGDSV 236

Query: 537  HRRFTRMKDDDKDPMKLQGEIEKVLRGHGESATALLDRMMSNAMNSLTSEINQTLFPSGL 716
            H +F     D ++   ++ +IEK LR  GE A++ LDR+MS+A+N LTS++N  LFP GL
Sbjct: 237  HSQFIGADGDQREFEGMEEDIEKHLRSKGEVASSRLDRLMSSALNRLTSDVNNGLFPKGL 296

Query: 717  SKSFLTNCLSLMTATGAKGGLVNMTQISSLLGQQELEGKRVPRMVSGKTLPCFPPWDVSS 896
             K F +NCLSLMT TGAKGGLVN TQISSLLGQQELEGKRVPRMVSGKTLPCFPPWD  +
Sbjct: 297  LKPFPSNCLSLMTMTGAKGGLVNFTQISSLLGQQELEGKRVPRMVSGKTLPCFPPWDSRA 356

Query: 897  RSGGFISDRFLTGLRPQEYYFHCMAGRDGLVDTAIKTSRSGYLQRCLVKNLECLKVSYDY 1076
            R+GGFI DRFLTGLRPQEYYFHCMAGRDGLVDTAIKTSRSGYLQRCL+KNLECLKV YDY
Sbjct: 357  RAGGFIGDRFLTGLRPQEYYFHCMAGRDGLVDTAIKTSRSGYLQRCLIKNLECLKVHYDY 416

Query: 1077 TVR 1085
            TVR
Sbjct: 417  TVR 419


>gb|ACJ63314.1| RNA polymerase I large subunit [Illicium parviflorum]
          Length = 540

 Score =  467 bits (1202), Expect = e-129
 Identities = 231/363 (63%), Positives = 282/363 (77%), Gaps = 2/363 (0%)
 Frame = +3

Query: 3    REEYHQLIYVSCMPPTS--YAQNRYGEKASLSWSENEIQPLPPAIWKPIPLWTGKQVITA 176
            +E+Y  L+Y +C+  T+  + + +   K  +   ++    LPPAI KP PLWTGKQVIT 
Sbjct: 55   KEDYQHLVYTACVSTTAPVFQRGKSFPKVGIVKDDHTFLSLPPAILKPEPLWTGKQVITT 114

Query: 177  ILNYVTRGCLPFTIEKKGRIQKEYIGNDSAQLVLHIYNNELIHGMIDKAQFGTYGLVHAV 356
            +L+YVT+G +PFT+++ G++  +Y G +S +L + I NNELI G+IDKAQFG +GLVH V
Sbjct: 115  VLHYVTKGSVPFTMKRAGKVPGDYWGKNSGELKVRIQNNELICGVIDKAQFGKHGLVHIV 174

Query: 357  HELYGPDVAGTLLSVFSRLFTSFLQMHGFTCGVDDLLLKRSSDMERDRILEKSEMLSEEV 536
             ELYG DVAG LLSVFSRLFT +LQMHGFTCGV DLLL   ++ +R + LEKSE L + V
Sbjct: 175  QELYGADVAGHLLSVFSRLFTGYLQMHGFTCGVADLLLVPQAEDDRQKKLEKSEELGDNV 234

Query: 537  HRRFTRMKDDDKDPMKLQGEIEKVLRGHGESATALLDRMMSNAMNSLTSEINQTLFPSGL 716
            H +F     D  D   ++ E EK LR  G++A+A LDR+MS+A+N +TSE+N  LFP GL
Sbjct: 235  HFQFIGANGDQIDLESMEEETEKHLRSKGDAASARLDRLMSSALNRVTSEVNNALFPKGL 294

Query: 717  SKSFLTNCLSLMTATGAKGGLVNMTQISSLLGQQELEGKRVPRMVSGKTLPCFPPWDVSS 896
             K F +NCLSLMT TGAKGGLVN TQISSLLGQQELEGKRVPR++SGKTLPCF PWD  +
Sbjct: 295  LKPFPSNCLSLMTMTGAKGGLVNFTQISSLLGQQELEGKRVPRVISGKTLPCFLPWDSRA 354

Query: 897  RSGGFISDRFLTGLRPQEYYFHCMAGRDGLVDTAIKTSRSGYLQRCLVKNLECLKVSYDY 1076
            R+GGFISDRFLTGLRPQEYYFHCMAGRDGLVDTAIKT+RSGYLQRCL+KNLECLKV YDY
Sbjct: 355  RAGGFISDRFLTGLRPQEYYFHCMAGRDGLVDTAIKTTRSGYLQRCLIKNLECLKVYYDY 414

Query: 1077 TVR 1085
            TVR
Sbjct: 415  TVR 417


>gb|AAS55445.1| RNA polymerase I largest subunit [Ginkgo biloba]
          Length = 542

 Score =  464 bits (1195), Expect = e-128
 Identities = 231/363 (63%), Positives = 280/363 (77%), Gaps = 2/363 (0%)
 Frame = +3

Query: 3    REEYHQLIYVSCMPPTS--YAQNRYGEKASLSWSENEIQPLPPAIWKPIPLWTGKQVITA 176
            +E+Y  L+Y +C+  T+  + + +   K  +   ++    LPPAI KP PLWTGKQVIT 
Sbjct: 57   KEDYQHLVYTACVSTTAPVFQRGKSFPKVGIVKDDHTFLSLPPAILKPEPLWTGKQVITT 116

Query: 177  ILNYVTRGCLPFTIEKKGRIQKEYIGNDSAQLVLHIYNNELIHGMIDKAQFGTYGLVHAV 356
            +L+YVT+G +PFT+++ G++  +Y G +S +L + I NNELI G+IDKAQFG +GLVH V
Sbjct: 117  VLHYVTKGSVPFTMKRAGKVPGDYWGKNSGELKVRIQNNELICGVIDKAQFGKHGLVHIV 176

Query: 357  HELYGPDVAGTLLSVFSRLFTSFLQMHGFTCGVDDLLLKRSSDMERDRILEKSEMLSEEV 536
             ELYG DVAG LLSVFSRLFT +LQMHGFTCGV DLLL   ++ +R + LEKSE L + V
Sbjct: 177  QELYGADVAGHLLSVFSRLFTGYLQMHGFTCGVADLLLVPQAEDDRQKKLEKSEELGDNV 236

Query: 537  HRRFTRMKDDDKDPMKLQGEIEKVLRGHGESATALLDRMMSNAMNSLTSEINQTLFPSGL 716
            H +F     D  D   ++ E EK LR  G++A+A LDR+MS+A+N +TSE+N  LFP GL
Sbjct: 237  HFQFIGANGDQIDLESMEEETEKHLRSKGDAASARLDRLMSSALNRVTSEVNNALFPKGL 296

Query: 717  SKSFLTNCLSLMTATGAKGGLVNMTQISSLLGQQELEGKRVPRMVSGKTLPCFPPWDVSS 896
             K F +NCLSLMT TGAKGGLVN TQISSLLGQQELEGKRVPRM+SGKTLPCF PWD  +
Sbjct: 297  LKPFPSNCLSLMTMTGAKGGLVNFTQISSLLGQQELEGKRVPRMISGKTLPCFLPWDSRA 356

Query: 897  RSGGFISDRFLTGLRPQEYYFHCMAGRDGLVDTAIKTSRSGYLQRCLVKNLECLKVSYDY 1076
            R+GGFISDRFLTGLRPQEYYF CMA RDGLVDTAIKTSRSGYLQRCL+KNLECLKV YDY
Sbjct: 357  RAGGFISDRFLTGLRPQEYYFQCMAARDGLVDTAIKTSRSGYLQRCLIKNLECLKVYYDY 416

Query: 1077 TVR 1085
            TVR
Sbjct: 417  TVR 419


>gb|ACJ63315.1| RNA polymerase I large subunit [Liriodendron tulipifera]
          Length = 558

 Score =  461 bits (1186), Expect = e-127
 Identities = 235/389 (60%), Positives = 281/389 (72%), Gaps = 28/389 (7%)
 Frame = +3

Query: 3    REEYHQLIY---VSCMPPTSYAQNRYGEKASLSWSENEIQPLPPAIWKPIPLWTGKQVIT 173
            R+EYH L+Y   VS     SY   ++G+K     S++EIQPLPP IWKP PLWTGKQVIT
Sbjct: 55   RDEYHMLLYASGVSTAASGSYV-GKFGQKVCTLSSDDEIQPLPPVIWKPKPLWTGKQVIT 113

Query: 174  AILNYVTRGCLPFTIEKKGRIQK-------------------------EYIGNDSAQLVL 278
             ILN++TRG  PFT++K+G+I+                          ++  +   +  L
Sbjct: 114  TILNHITRGHPPFTVKKEGKIEDGCFYSEWKEGNMVDGVKKEIVEGCFKHCKSKGKKHKL 173

Query: 279  HIYNNELIHGMIDKAQFGTYGLVHAVHELYGPDVAGTLLSVFSRLFTSFLQMHGFTCGVD 458
             I+ NEL+HG+IDK QF  YG+VH V ELYG + AG LLSV SRLFT FLQMHGFTCGVD
Sbjct: 174  IIWKNELVHGVIDKNQFAKYGMVHTVQELYGSNTAGILLSVLSRLFTVFLQMHGFTCGVD 233

Query: 459  DLLLKRSSDMERDRILEKSEMLSEEVHRRFTRMKDDDKDPMKLQGEIEKVLRGHGESATA 638
            DLL+ + SD++R  ILEK E +   VH +    K  +  PMKLQ EIE+ +R HGESA  
Sbjct: 234  DLLIVQQSDLKRQMILEKHENIGTNVHSKLIGAKITE--PMKLQMEIERAIRSHGESAVT 291

Query: 639  LLDRMMSNAMNSLTSEINQTLFPSGLSKSFLTNCLSLMTATGAKGGLVNMTQISSLLGQQ 818
             LD +MS+ +N +T+EIN  + PSGL K F  NCLSLMT TGAKG  VN TQISSLLGQQ
Sbjct: 292  YLDMLMSHELNGVTTEINDAIIPSGLLKPFPRNCLSLMTTTGAKGSQVNFTQISSLLGQQ 351

Query: 819  ELEGKRVPRMVSGKTLPCFPPWDVSSRSGGFISDRFLTGLRPQEYYFHCMAGRDGLVDTA 998
            +LEGKRVPRMVSGKTLPCFPPWD ++R+GGFI DRFLTGLRPQEYYFHCMAGR+GLVDTA
Sbjct: 352  QLEGKRVPRMVSGKTLPCFPPWDTAARAGGFIGDRFLTGLRPQEYYFHCMAGREGLVDTA 411

Query: 999  IKTSRSGYLQRCLVKNLECLKVSYDYTVR 1085
            IKTSRSGYLQRCL+KNLECL+V YD+TVR
Sbjct: 412  IKTSRSGYLQRCLIKNLECLRVCYDHTVR 440


>ref|XP_004967186.1| PREDICTED: DNA-directed RNA polymerase I subunit rpa1-like [Setaria
            italica]
          Length = 1682

 Score =  457 bits (1175), Expect = e-126
 Identities = 236/373 (63%), Positives = 285/373 (76%), Gaps = 12/373 (3%)
 Frame = +3

Query: 3    REEYHQLIYVSCMPPTSYAQNRYGEKASLSWSENEIQPLPPAIWKPIPLWTGKQVITAIL 182
            REEY QL+Y SC+P +++   + G K S    ++ +  + PAI KP PLWTGKQVIT IL
Sbjct: 670  REEYSQLVYGSCVP-SNWGPRQPGIKVSAIKDDDALGFVLPAILKPKPLWTGKQVITTIL 728

Query: 183  NYVTRGCLPFTIEKKGRIQKEYIGNDS------------AQLVLHIYNNELIHGMIDKAQ 326
            N++T+G  PFT+E+KG+I +E++                ++LVL+I NNELI GMIDKAQ
Sbjct: 729  NHLTKGRSPFTVEQKGKISEEHLTPKKFEESESERKIAISELVLYIKNNELIKGMIDKAQ 788

Query: 327  FGTYGLVHAVHELYGPDVAGTLLSVFSRLFTSFLQMHGFTCGVDDLLLKRSSDMERDRIL 506
            FG YG+VH VHELYG D AG LLS FSRLFT FLQ HGFTCGVDDLLL + +D  R  I+
Sbjct: 789  FGQYGIVHTVHELYGADTAGILLSTFSRLFTLFLQFHGFTCGVDDLLLCQKADEARRSII 848

Query: 507  EKSEMLSEEVHRRFTRMKDDDKDPMKLQGEIEKVLRGHGESATALLDRMMSNAMNSLTSE 686
             +S+  SE+ H  F +     KD  +LQ E+EKV+R  GESAT  +DR +SNA++++TS+
Sbjct: 849  SESDKYSEKAHGTFIKT---GKDGEELQMEVEKVIRRDGESATVNMDREISNALSNITSD 905

Query: 687  INQTLFPSGLSKSFLTNCLSLMTATGAKGGLVNMTQISSLLGQQELEGKRVPRMVSGKTL 866
            +N+ +FP GL K F  NCL+LMTATGAKGG VNM QISSLLGQQELEGKRVPRMVSGKTL
Sbjct: 906  VNKNVFPYGLQKPFPGNCLTLMTATGAKGGDVNMYQISSLLGQQELEGKRVPRMVSGKTL 965

Query: 867  PCFPPWDVSSRSGGFISDRFLTGLRPQEYYFHCMAGRDGLVDTAIKTSRSGYLQRCLVKN 1046
            PCF PWD SSR+GGFISDRFLTGLRPQEYYFHCMAGR+GL DTA+KTSRSGYLQRCL+K 
Sbjct: 966  PCFLPWDTSSRAGGFISDRFLTGLRPQEYYFHCMAGREGLCDTAVKTSRSGYLQRCLIKC 1025

Query: 1047 LECLKVSYDYTVR 1085
            LE LKVSYD+TVR
Sbjct: 1026 LESLKVSYDHTVR 1038


>emb|CBI29879.3| unnamed protein product [Vitis vinifera]
          Length = 1669

 Score =  456 bits (1173), Expect = e-126
 Identities = 234/387 (60%), Positives = 281/387 (72%), Gaps = 26/387 (6%)
 Frame = +3

Query: 3    REEYHQLIYVSCMPPTSYAQ-NRYGEKASLSWSENEIQPLPPAIWKPIPLWTGKQVITAI 179
            RE+Y+QL+Y S +   S +   + G+K S+  SE+E+QPL PAIWKP PLW+GKQVITA+
Sbjct: 660  REQYNQLLYSSGLSSGSGSFIGKPGKKVSVLDSEDEMQPLLPAIWKPEPLWSGKQVITAV 719

Query: 180  LNYVTRGCLPFTIEKKGRIQKEYIGND-------------------------SAQLVLHI 284
            LN++TRG  PFT EK G+I +EY G++                           +  L I
Sbjct: 720  LNHITRGRKPFTTEKDGKIPREYFGSEIDEKKSGKGKDPGSDRRKEKRIEKKHGEYKLLI 779

Query: 285  YNNELIHGMIDKAQFGTYGLVHAVHELYGPDVAGTLLSVFSRLFTSFLQMHGFTCGVDDL 464
            + NEL+ G+IDKAQF  YGLVH V ELYG + AG LLSV SRLFT FLQMHGFTCGVDDL
Sbjct: 780  HKNELVRGVIDKAQFDKYGLVHMVQELYGSNTAGILLSVLSRLFTVFLQMHGFTCGVDDL 839

Query: 465  LLKRSSDMERDRILEKSEMLSEEVHRRFTRMKDDDKDPMKLQGEIEKVLRGHGESATALL 644
            L+  + D+ R   L+KSE + E VH +F        DP+KLQ E+EK++  +GE+A   L
Sbjct: 840  LISPNYDIARKIELDKSENIGELVHCKFIGSNHGKIDPVKLQVEVEKIILSNGEAAITRL 899

Query: 645  DRMMSNAMNSLTSEINQTLFPSGLSKSFLTNCLSLMTATGAKGGLVNMTQISSLLGQQEL 824
            DRMM N +N LTS++N+ L   GL K F  NCLSLMT TGAKG  VN +QISS LGQQ+L
Sbjct: 900  DRMMKNELNELTSKVNKDLLLKGLVKPFPKNCLSLMTTTGAKGSTVNFSQISSFLGQQDL 959

Query: 825  EGKRVPRMVSGKTLPCFPPWDVSSRSGGFISDRFLTGLRPQEYYFHCMAGRDGLVDTAIK 1004
            EGKRVPRMVSGKTLPCFPPWD ++R+GGFISDRFLTGL PQEYYFHCMAGR+GLVDTA+K
Sbjct: 960  EGKRVPRMVSGKTLPCFPPWDCAARAGGFISDRFLTGLHPQEYYFHCMAGREGLVDTAVK 1019

Query: 1005 TSRSGYLQRCLVKNLECLKVSYDYTVR 1085
            TSRSGYLQRCL+KNLECLKV YDYTVR
Sbjct: 1020 TSRSGYLQRCLIKNLECLKVCYDYTVR 1046


>ref|XP_002277555.1| PREDICTED: DNA-directed RNA polymerase I subunit RPA1-like [Vitis
            vinifera]
          Length = 1740

 Score =  456 bits (1173), Expect = e-126
 Identities = 234/387 (60%), Positives = 281/387 (72%), Gaps = 26/387 (6%)
 Frame = +3

Query: 3    REEYHQLIYVSCMPPTSYAQ-NRYGEKASLSWSENEIQPLPPAIWKPIPLWTGKQVITAI 179
            RE+Y+QL+Y S +   S +   + G+K S+  SE+E+QPL PAIWKP PLW+GKQVITA+
Sbjct: 731  REQYNQLLYSSGLSSGSGSFIGKPGKKVSVLDSEDEMQPLLPAIWKPEPLWSGKQVITAV 790

Query: 180  LNYVTRGCLPFTIEKKGRIQKEYIGND-------------------------SAQLVLHI 284
            LN++TRG  PFT EK G+I +EY G++                           +  L I
Sbjct: 791  LNHITRGRKPFTTEKDGKIPREYFGSEIDEKKSGKGKDPGSDRRKEKRIEKKHGEYKLLI 850

Query: 285  YNNELIHGMIDKAQFGTYGLVHAVHELYGPDVAGTLLSVFSRLFTSFLQMHGFTCGVDDL 464
            + NEL+ G+IDKAQF  YGLVH V ELYG + AG LLSV SRLFT FLQMHGFTCGVDDL
Sbjct: 851  HKNELVRGVIDKAQFDKYGLVHMVQELYGSNTAGILLSVLSRLFTVFLQMHGFTCGVDDL 910

Query: 465  LLKRSSDMERDRILEKSEMLSEEVHRRFTRMKDDDKDPMKLQGEIEKVLRGHGESATALL 644
            L+  + D+ R   L+KSE + E VH +F        DP+KLQ E+EK++  +GE+A   L
Sbjct: 911  LISPNYDIARKIELDKSENIGELVHCKFIGSNHGKIDPVKLQVEVEKIILSNGEAAITRL 970

Query: 645  DRMMSNAMNSLTSEINQTLFPSGLSKSFLTNCLSLMTATGAKGGLVNMTQISSLLGQQEL 824
            DRMM N +N LTS++N+ L   GL K F  NCLSLMT TGAKG  VN +QISS LGQQ+L
Sbjct: 971  DRMMKNELNELTSKVNKDLLLKGLVKPFPKNCLSLMTTTGAKGSTVNFSQISSFLGQQDL 1030

Query: 825  EGKRVPRMVSGKTLPCFPPWDVSSRSGGFISDRFLTGLRPQEYYFHCMAGRDGLVDTAIK 1004
            EGKRVPRMVSGKTLPCFPPWD ++R+GGFISDRFLTGL PQEYYFHCMAGR+GLVDTA+K
Sbjct: 1031 EGKRVPRMVSGKTLPCFPPWDCAARAGGFISDRFLTGLHPQEYYFHCMAGREGLVDTAVK 1090

Query: 1005 TSRSGYLQRCLVKNLECLKVSYDYTVR 1085
            TSRSGYLQRCL+KNLECLKV YDYTVR
Sbjct: 1091 TSRSGYLQRCLIKNLECLKVCYDYTVR 1117


>emb|CAN70028.1| hypothetical protein VITISV_029145 [Vitis vinifera]
          Length = 1350

 Score =  456 bits (1173), Expect = e-126
 Identities = 234/387 (60%), Positives = 281/387 (72%), Gaps = 26/387 (6%)
 Frame = +3

Query: 3    REEYHQLIYVSCMPPTSYAQ-NRYGEKASLSWSENEIQPLPPAIWKPIPLWTGKQVITAI 179
            RE+Y+QL+Y S +   S +   + G+K S+  SE+E+QPL PAIWKP PLW+GKQVITA+
Sbjct: 797  REQYNQLLYSSGLSSGSGSFIGKPGKKVSVLDSEDEMQPLLPAIWKPEPLWSGKQVITAV 856

Query: 180  LNYVTRGCLPFTIEKKGRIQKEYIGND-------------------------SAQLVLHI 284
            LN++TRG  PFT EK G+I +EY G++                           +  L I
Sbjct: 857  LNHITRGRKPFTTEKDGKIPREYFGSEIDEKKSGKGKDPGSDRRKEKRIEKKHGEYKLLI 916

Query: 285  YNNELIHGMIDKAQFGTYGLVHAVHELYGPDVAGTLLSVFSRLFTSFLQMHGFTCGVDDL 464
            + NEL+ G+IDKAQF  YGLVH V ELYG + AG LLSV SRLFT FLQMHGFTCGVDDL
Sbjct: 917  HKNELVRGVIDKAQFDKYGLVHMVQELYGSNTAGILLSVLSRLFTVFLQMHGFTCGVDDL 976

Query: 465  LLKRSSDMERDRILEKSEMLSEEVHRRFTRMKDDDKDPMKLQGEIEKVLRGHGESATALL 644
            L+  + D+ R   L+KSE + E VH +F        DP+KLQ E+EK++  +GE+A   L
Sbjct: 977  LISPNYDIARKIELDKSENIGELVHCKFIGSNHGKIDPVKLQVEVEKIILSNGEAAITRL 1036

Query: 645  DRMMSNAMNSLTSEINQTLFPSGLSKSFLTNCLSLMTATGAKGGLVNMTQISSLLGQQEL 824
            DRMM N +N LTS++N+ L   GL K F  NCLSLMT TGAKG  VN +QISS LGQQ+L
Sbjct: 1037 DRMMKNELNELTSKVNKDLLLKGLVKPFPKNCLSLMTTTGAKGSTVNFSQISSFLGQQDL 1096

Query: 825  EGKRVPRMVSGKTLPCFPPWDVSSRSGGFISDRFLTGLRPQEYYFHCMAGRDGLVDTAIK 1004
            EGKRVPRMVSGKTLPCFPPWD ++R+GGFISDRFLTGL PQEYYFHCMAGR+GLVDTA+K
Sbjct: 1097 EGKRVPRMVSGKTLPCFPPWDCAARAGGFISDRFLTGLHPQEYYFHCMAGREGLVDTAVK 1156

Query: 1005 TSRSGYLQRCLVKNLECLKVSYDYTVR 1085
            TSRSGYLQRCL+KNLECLKV YDYTVR
Sbjct: 1157 TSRSGYLQRCLIKNLECLKVCYDYTVR 1183


>gb|ACJ63316.1| RNA polymerase I large subunit [Nymphaea odorata]
          Length = 542

 Score =  449 bits (1155), Expect = e-124
 Identities = 234/371 (63%), Positives = 268/371 (72%), Gaps = 10/371 (2%)
 Frame = +3

Query: 3    REEYHQLIYVSCMPPTSYAQNRYGE---KASLSWSENEIQPLPPAIWKPIPLWTGKQVIT 173
            REEYH L+Y +C      A    GE   K  +  SE +I P+ PAIWKP PLWTGKQ+IT
Sbjct: 55   REEYHHLLYSAC------AMVNLGESSKKCCMIKSEGDIHPILPAIWKPYPLWTGKQIIT 108

Query: 174  AILNYVTRGCLPFTIEKKGRIQKEYIGNDSAQL---VLH----IYNNELIHGMIDKAQFG 332
             ILN+V  G  PFT+E   +I    I   S Q     LH    I  NE I+G+IDKAQ+G
Sbjct: 109  TILNHVAHGLPPFTVENVAKIHDYNIIPKSCQREANTLHRKCLICKNEFIYGVIDKAQYG 168

Query: 333  TYGLVHAVHELYGPDVAGTLLSVFSRLFTSFLQMHGFTCGVDDLLLKRSSDMERDRILEK 512
             YGLVH V ELYG + AG LLS+ SRLFT+F QMHGFTCGVDD LL   +++ R     +
Sbjct: 169  KYGLVHMVQELYGENTAGLLLSILSRLFTAFFQMHGFTCGVDDPLLVPEAEVLRTESTNR 228

Query: 513  SEMLSEEVHRRFTRMKDDDKDPMKLQGEIEKVLRGHGESATALLDRMMSNAMNSLTSEIN 692
             E + E VH +F  M+ D  DP+ LQ EIE VLR +GESAT  LD +MS+ +N LT+E+N
Sbjct: 229  CESIGESVHSKFIGMEYDQLDPISLQREIENVLRTNGESATERLDALMSSELNELTNELN 288

Query: 693  QTLFPSGLSKSFLTNCLSLMTATGAKGGLVNMTQISSLLGQQELEGKRVPRMVSGKTLPC 872
            + LFP GL K F  NC+ LMTA+GAKG  VN  QISSLLGQQELEGKRVPRMVSGKTLPC
Sbjct: 289  KKLFPVGLVKPFPNNCVFLMTASGAKGSNVNFIQISSLLGQQELEGKRVPRMVSGKTLPC 348

Query: 873  FPPWDVSSRSGGFISDRFLTGLRPQEYYFHCMAGRDGLVDTAIKTSRSGYLQRCLVKNLE 1052
            FPPWD + R+GGFISDRFLTGL PQEYYFHCMAGRDGLVDTAIKTSRSGYLQRCLVKNLE
Sbjct: 349  FPPWDTAPRAGGFISDRFLTGLHPQEYYFHCMAGRDGLVDTAIKTSRSGYLQRCLVKNLE 408

Query: 1053 CLKVSYDYTVR 1085
            CLKV YDYTVR
Sbjct: 409  CLKVCYDYTVR 419


>gb|AAS55437.1| RNA polymerase I largest subunit [Taxus canadensis]
          Length = 545

 Score =  443 bits (1140), Expect = e-122
 Identities = 225/363 (61%), Positives = 276/363 (76%), Gaps = 2/363 (0%)
 Frame = +3

Query: 3    REEYHQLIYVSCMP--PTSYAQNRYGEKASLSWSENEIQPLPPAIWKPIPLWTGKQVITA 176
            +E+Y  L+Y +C+   P  + + +   K  +   +     + P IWKP PLWTGKQVIT 
Sbjct: 57   KEDYQHLVYNACVSNSPPVFQRGKSLPKVGIIEDDYGFLSVAPTIWKPEPLWTGKQVITT 116

Query: 177  ILNYVTRGCLPFTIEKKGRIQKEYIGNDSAQLVLHIYNNELIHGMIDKAQFGTYGLVHAV 356
            +LN+VT G   F  E+   +  +Y G  S +L + I NNE I G+IDKAQFG YGLVH V
Sbjct: 117  VLNHVT-GETVFYHEQIWEVPGDYWGKSSGELDVVIQNNEHICGIIDKAQFGKYGLVHIV 175

Query: 357  HELYGPDVAGTLLSVFSRLFTSFLQMHGFTCGVDDLLLKRSSDMERDRILEKSEMLSEEV 536
             ELYG +VAG LLS+FSRLFT +LQMHGFTCG+ DLLLK  +++ R +IL KSE L E+V
Sbjct: 176  QELYGANVAGHLLSIFSRLFTGYLQMHGFTCGIADLLLKPGAEVRRQKILAKSEDLGEKV 235

Query: 537  HRRFTRMKDDDKDPMKLQGEIEKVLRGHGESATALLDRMMSNAMNSLTSEINQTLFPSGL 716
            H +F      ++D + +  +IEK+LR  GE+A+A LDR+MS+A+N +TS++N +LFP GL
Sbjct: 236  HLQFL---GGNEDLVHMGEDIEKLLRSKGETASARLDRLMSSALNRITSDVNNSLFPKGL 292

Query: 717  SKSFLTNCLSLMTATGAKGGLVNMTQISSLLGQQELEGKRVPRMVSGKTLPCFPPWDVSS 896
             K F +NCLSLMT TGAKGGLV+ TQISSLLGQQELEGKRVPRMVSGKTLPCF PWD  +
Sbjct: 293  LKPFPSNCLSLMTTTGAKGGLVDFTQISSLLGQQELEGKRVPRMVSGKTLPCFLPWDTRA 352

Query: 897  RSGGFISDRFLTGLRPQEYYFHCMAGRDGLVDTAIKTSRSGYLQRCLVKNLECLKVSYDY 1076
            R+GGFISDRFLTGLRPQEYYFHCMAGRDGLVDTA+KTSRSGYLQRCL+KNLECLKV YDY
Sbjct: 353  RAGGFISDRFLTGLRPQEYYFHCMAGRDGLVDTAVKTSRSGYLQRCLIKNLECLKVYYDY 412

Query: 1077 TVR 1085
            T+R
Sbjct: 413  TIR 415


>gb|AAS55439.1| RNA polymerase I largest subunit [Ephedra viridis]
          Length = 534

 Score =  440 bits (1132), Expect = e-121
 Identities = 220/365 (60%), Positives = 273/365 (74%), Gaps = 4/365 (1%)
 Frame = +3

Query: 3    REEYHQLIYVSCMPPTSYAQNRYG----EKASLSWSENEIQPLPPAIWKPIPLWTGKQVI 170
            +EEY  L+Y +C+  +S++   +G     K ++   ++    LPPA+WKP+PLWTGKQVI
Sbjct: 57   KEEYQNLVYSACI--SSFSGTSHGCNSQSKVAICKEDSLFVSLPPAVWKPVPLWTGKQVI 114

Query: 171  TAILNYVTRGCLPFTIEKKGRIQKEYIGNDSAQLVLHIYNNELIHGMIDKAQFGTYGLVH 350
            T IL+Y+TRG LPF+++K GR+   Y G +S +L + I NNEL+ G+IDKAQFG YGLVH
Sbjct: 115  TTILDYITRGSLPFSMKKLGRVPAIYWGRESWELEVVIQNNELVCGVIDKAQFGKYGLVH 174

Query: 351  AVHELYGPDVAGTLLSVFSRLFTSFLQMHGFTCGVDDLLLKRSSDMERDRILEKSEMLSE 530
             VHELYG D AG LLSVFSRLFT F+Q                +++ER   L K++   +
Sbjct: 175  VVHELYGADAAGRLLSVFSRLFTCFMQ----------------AEIERREKLAKAKEEGD 218

Query: 531  EVHRRFTRMKDDDKDPMKLQGEIEKVLRGHGESATALLDRMMSNAMNSLTSEINQTLFPS 710
            + H +F      + D  K++ EIEK+LR  GES++A LDR+MS A+N +TSE+N ++FP 
Sbjct: 219  KAHAQFLGKDAKEIDLGKIEEEIEKILRSKGESSSARLDRLMSGALNKITSEVNGSVFPD 278

Query: 711  GLSKSFLTNCLSLMTATGAKGGLVNMTQISSLLGQQELEGKRVPRMVSGKTLPCFPPWDV 890
            GL K FL NCLSLMT TGAKGG+VN TQISSLLGQQELEGKRVPRM+SGKTLPCF PWD+
Sbjct: 279  GLRKPFLKNCLSLMTLTGAKGGMVNFTQISSLLGQQELEGKRVPRMISGKTLPCFSPWDI 338

Query: 891  SSRSGGFISDRFLTGLRPQEYYFHCMAGRDGLVDTAIKTSRSGYLQRCLVKNLECLKVSY 1070
              R+GGFISDRFLTGLRPQEYYFHCMAGRDGLVDTA+KTSRSGYLQRCL+KNLECL V Y
Sbjct: 339  QPRAGGFISDRFLTGLRPQEYYFHCMAGRDGLVDTAVKTSRSGYLQRCLIKNLECLTVFY 398

Query: 1071 DYTVR 1085
            D+TVR
Sbjct: 399  DHTVR 403