BLASTX nr result
ID: Zingiber23_contig00034879
seq
BLASTX 2.2.25 [Feb-01-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= Zingiber23_contig00034879
(306 letters)
Database: ./nr
37,332,560 sequences; 13,225,080,153 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
ref|XP_004488126.1| PREDICTED: LOW QUALITY PROTEIN: pentatricope... 75 7e-12
ref|XP_002283562.1| PREDICTED: pentatricopeptide repeat-containi... 75 1e-11
ref|XP_006280433.1| hypothetical protein CARUB_v10026365mg [Caps... 74 2e-11
gb|EOY05819.1| Pentatricopeptide repeat superfamily protein [The... 73 4e-11
ref|XP_003595326.1| Pentatricopeptide repeat-containing protein ... 71 2e-10
ref|XP_004244755.1| PREDICTED: pentatricopeptide repeat-containi... 68 1e-09
ref|NP_199192.1| pentatricopeptide repeat-containing protein [Ar... 67 2e-09
ref|XP_006403187.1| hypothetical protein EUTSA_v10003201mg [Eutr... 67 3e-09
ref|XP_006355780.1| PREDICTED: pentatricopeptide repeat-containi... 66 4e-09
ref|XP_002863633.1| pentatricopeptide repeat-containing protein ... 66 5e-09
ref|XP_003535689.1| PREDICTED: pentatricopeptide repeat-containi... 65 7e-09
ref|XP_003572219.1| PREDICTED: pentatricopeptide repeat-containi... 65 9e-09
gb|EPS61188.1| hypothetical protein M569_13609 [Genlisea aurea] 62 6e-08
gb|EEE70282.1| hypothetical protein OsJ_30444 [Oryza sativa Japo... 57 3e-06
gb|EEC85107.1| hypothetical protein OsI_32492 [Oryza sativa Indi... 57 3e-06
ref|NP_001064003.1| Os09g0573000 [Oryza sativa Japonica Group] g... 57 3e-06
>ref|XP_004488126.1| PREDICTED: LOW QUALITY PROTEIN: pentatricopeptide repeat-containing
protein At5g43790-like, partial [Cicer arietinum]
Length = 632
Score = 75.5 bits (184), Expect = 7e-12
Identities = 43/102 (42%), Positives = 64/102 (62%), Gaps = 3/102 (2%)
Frame = +1
Query: 10 SLPHAAALLRFASSP--FLPNTLVSSLADA-GRAHLALALYSHLFLRLRTAKPNGHTFPS 180
+LP+A + + +P FL NTL+SSL + + HLA LY+ + + ++ +PN TFPS
Sbjct: 89 NLPYACTIFNYIPNPTIFLYNTLISSLINQHSKIHLAFKLYNKIIIH-KSLQPNSFTFPS 147
Query: 181 LLKACAAAGPSFYPAGRALHAHAVKFLDPDAVDHFVSAALLS 306
LLKAC + P+++ G LH H +K L P DHFV A+LL+
Sbjct: 148 LLKAC-CSNPTWFQFGPKLHTHVLKLLQP-PFDHFVQASLLN 187
>ref|XP_002283562.1| PREDICTED: pentatricopeptide repeat-containing protein
At5g43790-like [Vitis vinifera]
Length = 590
Score = 74.7 bits (182), Expect = 1e-11
Identities = 48/99 (48%), Positives = 61/99 (61%), Gaps = 3/99 (3%)
Frame = +1
Query: 19 HAAALLRFASSP--FLPNTLVSSLADAG-RAHLALALYSHLFLRLRTAKPNGHTFPSLLK 189
HA ++ +P FL NTL+SSLA+ H+A +LYS + L T KPNG TFPSL K
Sbjct: 58 HALSIFNHIPNPTIFLYNTLISSLANIKPHTHIAFSLYSRV-LTHTTLKPNGFTFPSLFK 116
Query: 190 ACAAAGPSFYPAGRALHAHAVKFLDPDAVDHFVSAALLS 306
AC + + GRALH H +KFL+P D FV AALL+
Sbjct: 117 ACGS--QPWLRHGRALHTHVLKFLEP-TCDPFVQAALLN 152
>ref|XP_006280433.1| hypothetical protein CARUB_v10026365mg [Capsella rubella]
gi|482549137|gb|EOA13331.1| hypothetical protein
CARUB_v10026365mg [Capsella rubella]
Length = 461
Score = 74.3 bits (181), Expect = 2e-11
Identities = 46/103 (44%), Positives = 65/103 (63%), Gaps = 6/103 (5%)
Frame = +1
Query: 13 LPHAAALLRFASSP--FLPNTLVSSLA---DAGRAHLALALYSHLFL-RLRTAKPNGHTF 174
L +A ++LR S+P FL NTL+SS+ D+ + HLA ALY + + +PN T+
Sbjct: 57 LSYALSILRQISNPSVFLYNTLISSIVSNHDSTQTHLAFALYDQVSSSKSNLVRPNAFTY 116
Query: 175 PSLLKACAAAGPSFYPAGRALHAHAVKFLDPDAVDHFVSAALL 303
PSL KA + P ++ GRALHAH +KFL+P + D FV AAL+
Sbjct: 117 PSLFKA-SGFDPIWHRHGRALHAHVLKFLEPVSHDRFVEAALV 158
>gb|EOY05819.1| Pentatricopeptide repeat superfamily protein [Theobroma cacao]
Length = 601
Score = 72.8 bits (177), Expect = 4e-11
Identities = 47/103 (45%), Positives = 63/103 (61%), Gaps = 4/103 (3%)
Frame = +1
Query: 10 SLPHAAALLRFASSP--FLPNTLVSSLADAGRAH--LALALYSHLFLRLRTAKPNGHTFP 177
+L HA A+ +P FL NTL+SS+ R+H LA +LY + L T KPN HT+P
Sbjct: 55 ALSHALAIFNQIPNPTIFLFNTLISSIITNQRSHTHLAFSLYERI-LCYETVKPNSHTYP 113
Query: 178 SLLKACAAAGPSFYPAGRALHAHAVKFLDPDAVDHFVSAALLS 306
SL KAC + + G ALHAH +KFL+P D+FV A+LL+
Sbjct: 114 SLFKACGS--HPWLHHGLALHAHVLKFLEP-TYDNFVHASLLN 153
>ref|XP_003595326.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
gi|355484374|gb|AES65577.1| Pentatricopeptide
repeat-containing protein [Medicago truncatula]
Length = 740
Score = 70.9 bits (172), Expect = 2e-10
Identities = 44/104 (42%), Positives = 64/104 (61%), Gaps = 5/104 (4%)
Frame = +1
Query: 10 SLPHAAALLRFASSP--FLPNTLVSSL---ADAGRAHLALALYSHLFLRLRTAKPNGHTF 174
+LP+A + + S+P FL NTL+SSL + + HLA +LY+ + L + +PN TF
Sbjct: 195 NLPYAFKIFNYISNPTIFLYNTLISSLINQTNQNQIHLAFSLYNKI-LTNKNLQPNSFTF 253
Query: 175 PSLLKACAAAGPSFYPAGRALHAHAVKFLDPDAVDHFVSAALLS 306
PSL KAC + S++ G LH H +KFL P D+FV A+LL+
Sbjct: 254 PSLFKAC-CSNQSWFHYGPLLHTHVLKFLQP-PFDNFVQASLLN 295
>ref|XP_004244755.1| PREDICTED: pentatricopeptide repeat-containing protein
At5g43790-like [Solanum lycopersicum]
Length = 602
Score = 68.2 bits (165), Expect = 1e-09
Identities = 43/104 (41%), Positives = 62/104 (59%), Gaps = 5/104 (4%)
Frame = +1
Query: 10 SLPHAAALLRFASSP--FLPNTLVSSLADAGR---AHLALALYSHLFLRLRTAKPNGHTF 174
++ +A ++ ++P FL NTL+SS + H ALALY+ + L T PN +T+
Sbjct: 57 TISYALSIFNHVTNPTIFLFNTLISSSLSRKKDDQTHFALALYNRI-LTQTTLIPNSYTY 115
Query: 175 PSLLKACAAAGPSFYPAGRALHAHAVKFLDPDAVDHFVSAALLS 306
PSL KAC + + GRALH H +KFL+P DHFV A+LL+
Sbjct: 116 PSLFKACGSQ--PWIQHGRALHTHVLKFLEP-PYDHFVQASLLN 156
>ref|NP_199192.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
gi|75262420|sp|Q9FG85.1|PP415_ARATH RecName:
Full=Pentatricopeptide repeat-containing protein
At5g43790 gi|10177948|dbj|BAB11307.1| unnamed protein
product [Arabidopsis thaliana]
gi|332007627|gb|AED95010.1| pentatricopeptide
repeat-containing protein [Arabidopsis thaliana]
Length = 460
Score = 67.0 bits (162), Expect = 2e-09
Identities = 43/103 (41%), Positives = 62/103 (60%), Gaps = 6/103 (5%)
Frame = +1
Query: 13 LPHAAALLRFASSP--FLPNTLVSSLA---DAGRAHLALALYSHLFL-RLRTAKPNGHTF 174
L +A ++LR +P FL NTL+SS+ ++ + HLA +LY + R +PN T+
Sbjct: 56 LSYALSILRQIPNPSVFLYNTLISSIVSNHNSTQTHLAFSLYDQILSSRSNFVRPNEFTY 115
Query: 175 PSLLKACAAAGPSFYPAGRALHAHAVKFLDPDAVDHFVSAALL 303
PSL KA + ++ GRALHAH +KFL+P D FV AAL+
Sbjct: 116 PSLFKA-SGFDAQWHRHGRALHAHVLKFLEPVNHDRFVQAALV 157
>ref|XP_006403187.1| hypothetical protein EUTSA_v10003201mg [Eutrema salsugineum]
gi|557104300|gb|ESQ44640.1| hypothetical protein
EUTSA_v10003201mg [Eutrema salsugineum]
Length = 467
Score = 66.6 bits (161), Expect = 3e-09
Identities = 41/102 (40%), Positives = 63/102 (61%), Gaps = 5/102 (4%)
Frame = +1
Query: 13 LPHAAALLRFASSP--FLPNTLVSSLAD---AGRAHLALALYSHLFLRLRTAKPNGHTFP 177
L +A ++ R ++P FL NTL+SS+ + + HLA +LY+ +F R + +PN T+P
Sbjct: 56 LSYALSIFRRIANPSVFLYNTLISSIVSNHQSSQTHLAFSLYAQIF-RSVSVRPNEFTYP 114
Query: 178 SLLKACAAAGPSFYPAGRALHAHAVKFLDPDAVDHFVSAALL 303
SL KA + ++ GRALHAH +K ++P D FV AAL+
Sbjct: 115 SLFKA-SGFDTRWHRHGRALHAHVLKLIEPVNHDRFVQAALV 155
>ref|XP_006355780.1| PREDICTED: pentatricopeptide repeat-containing protein
At5g43790-like [Solanum tuberosum]
Length = 602
Score = 66.2 bits (160), Expect = 4e-09
Identities = 41/104 (39%), Positives = 63/104 (60%), Gaps = 5/104 (4%)
Frame = +1
Query: 10 SLPHAAALLRFASSP--FLPNTLVSSLADAGR---AHLALALYSHLFLRLRTAKPNGHTF 174
++ +A ++ ++P FL NTL+SS + ALALY+ + ++ T PN +T+
Sbjct: 57 TISYALSIFNHVTNPTIFLFNTLISSSLSRKKDDQTQFALALYNRILMQT-TLIPNSYTY 115
Query: 175 PSLLKACAAAGPSFYPAGRALHAHAVKFLDPDAVDHFVSAALLS 306
PSL KAC++ + GRALH H +KFL+P DHFV A+LL+
Sbjct: 116 PSLFKACSSQ--PWLQHGRALHTHVLKFLEP-PYDHFVQASLLN 156
>ref|XP_002863633.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
subsp. lyrata] gi|297309468|gb|EFH39892.1|
pentatricopeptide repeat-containing protein [Arabidopsis
lyrata subsp. lyrata]
Length = 460
Score = 65.9 bits (159), Expect = 5e-09
Identities = 42/103 (40%), Positives = 62/103 (60%), Gaps = 6/103 (5%)
Frame = +1
Query: 13 LPHAAALLRFASSP--FLPNTLVSSLA---DAGRAHLALALYSHLFL-RLRTAKPNGHTF 174
L +A ++LR +P FL NTL+SS+ ++ + HLA +LY + R +PN T+
Sbjct: 56 LSYALSILRQIPNPSVFLYNTLISSIVSNHNSTQTHLAFSLYDQILSSRSNFVRPNEFTY 115
Query: 175 PSLLKACAAAGPSFYPAGRALHAHAVKFLDPDAVDHFVSAALL 303
PSL KA + ++ GRALHAH +KF++P D FV AAL+
Sbjct: 116 PSLFKA-SGFETKWHRHGRALHAHVLKFIEPVNHDRFVQAALV 157
>ref|XP_003535689.1| PREDICTED: pentatricopeptide repeat-containing protein
At5g43790-like [Glycine max]
Length = 591
Score = 65.5 bits (158), Expect = 7e-09
Identities = 41/85 (48%), Positives = 54/85 (63%), Gaps = 1/85 (1%)
Frame = +1
Query: 55 FLPNTLVSSLAD-AGRAHLALALYSHLFLRLRTAKPNGHTFPSLLKACAAAGPSFYPAGR 231
FL NTL+SSL + + HLA +LY+H+ L +T +PN TFPSL KACA+ + G
Sbjct: 68 FLYNTLISSLTHHSDQIHLAFSLYNHI-LTHKTLQPNSFTFPSLFKACAS--HPWLQHGP 124
Query: 232 ALHAHAVKFLDPDAVDHFVSAALLS 306
LHAH +KFL P D FV +LL+
Sbjct: 125 PLHAHVLKFLQP-PYDPFVQNSLLN 148
>ref|XP_003572219.1| PREDICTED: pentatricopeptide repeat-containing protein
At5g66520-like [Brachypodium distachyon]
Length = 571
Score = 65.1 bits (157), Expect = 9e-09
Identities = 42/103 (40%), Positives = 60/103 (58%), Gaps = 4/103 (3%)
Frame = +1
Query: 10 SLPHAAALLRFASSPFLPNTLVSSLADAGRAHLALALYSHLFLRLRTAKPNGHTFPSLLK 189
SLP+A +LL+ + F NT + SLA R HLA+ALY + L + PN +T+P LL
Sbjct: 43 SLPYAISLLQAHPTTFSYNTTIRSLAHGPRPHLAVALYRSMLLN-PLSNPNNYTYPPLLA 101
Query: 190 ACAAAGPSFYP----AGRALHAHAVKFLDPDAVDHFVSAALLS 306
ACA P+ P AG A+HA + ++ D F+SA++LS
Sbjct: 102 ACARLLPAHPPREAAAGTAVHASLFR-RGLESRDRFISASMLS 143
>gb|EPS61188.1| hypothetical protein M569_13609 [Genlisea aurea]
Length = 478
Score = 62.4 bits (150), Expect = 6e-08
Identities = 41/101 (40%), Positives = 55/101 (54%), Gaps = 2/101 (1%)
Frame = +1
Query: 10 SLPHAAALLRFASSP--FLPNTLVSSLADAGRAHLALALYSHLFLRLRTAKPNGHTFPSL 183
S+ + A+ +P FL NTL+SS G A +AL+LY + +PN +TFPSL
Sbjct: 53 SISYTLAIFNRVLNPTIFLYNTLISSCIRNGHAQIALSLYHQVIAGPPHLEPNSYTFPSL 112
Query: 184 LKACAAAGPSFYPAGRALHAHAVKFLDPDAVDHFVSAALLS 306
KA A + G ALHAH VKFL D+FV +LL+
Sbjct: 113 FKAFGAR--ELFRHGAALHAHVVKFLQ-HPHDNFVQVSLLN 150
>gb|EEE70282.1| hypothetical protein OsJ_30444 [Oryza sativa Japonica Group]
Length = 1082
Score = 57.0 bits (136), Expect = 3e-06
Identities = 38/106 (35%), Positives = 59/106 (55%), Gaps = 7/106 (6%)
Frame = +1
Query: 10 SLPHAAALLRFASSPFLPNTLVSSLADAGRAHLALALYSHLFLRLRTAKPNGHTFPSLLK 189
SLP+A ++LR + F N+ + +LA R HLA++LY + R + PN +T+P LL
Sbjct: 39 SLPYALSILRAHPTTFSYNSAIRALARGPRPHLAISLYRSMLSHSR-SHPNNYTYPPLLA 97
Query: 190 ACA-------AAGPSFYPAGRALHAHAVKFLDPDAVDHFVSAALLS 306
ACA ++ + AG ALHA + ++ D F+ A+LLS
Sbjct: 98 ACARLADSDSSSAAAAAAAGVALHASLFR-RGLESPDRFIRASLLS 142
>gb|EEC85107.1| hypothetical protein OsI_32492 [Oryza sativa Indica Group]
Length = 1073
Score = 57.0 bits (136), Expect = 3e-06
Identities = 38/106 (35%), Positives = 59/106 (55%), Gaps = 7/106 (6%)
Frame = +1
Query: 10 SLPHAAALLRFASSPFLPNTLVSSLADAGRAHLALALYSHLFLRLRTAKPNGHTFPSLLK 189
SLP+A ++LR + F N+ + +LA R HLA++LY + R + PN +T+P LL
Sbjct: 39 SLPYALSILRAHPTTFSYNSAIRALARGPRPHLAISLYRSMLSHSR-SHPNNYTYPPLLA 97
Query: 190 ACA-------AAGPSFYPAGRALHAHAVKFLDPDAVDHFVSAALLS 306
ACA ++ + AG ALHA + ++ D F+ A+LLS
Sbjct: 98 ACARLADSDSSSAAAAAAAGVALHASLFR-RGLESPDRFIRASLLS 142
>ref|NP_001064003.1| Os09g0573000 [Oryza sativa Japonica Group]
gi|113632236|dbj|BAF25917.1| Os09g0573000 [Oryza sativa
Japonica Group]
Length = 555
Score = 57.0 bits (136), Expect = 3e-06
Identities = 38/106 (35%), Positives = 59/106 (55%), Gaps = 7/106 (6%)
Frame = +1
Query: 10 SLPHAAALLRFASSPFLPNTLVSSLADAGRAHLALALYSHLFLRLRTAKPNGHTFPSLLK 189
SLP+A ++LR + F N+ + +LA R HLA++LY + R + PN +T+P LL
Sbjct: 39 SLPYALSILRAHPTTFSYNSAIRALARGPRPHLAISLYRSMLSHSR-SHPNNYTYPPLLA 97
Query: 190 ACA-------AAGPSFYPAGRALHAHAVKFLDPDAVDHFVSAALLS 306
ACA ++ + AG ALHA + ++ D F+ A+LLS
Sbjct: 98 ACARLADSDSSSAAAAAAAGVALHASLFR-RGLESPDRFIRASLLS 142