BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Zingiber23_contig00031978
         (1116 letters)

Database: ./nr 
           37,332,560 sequences; 13,225,080,153 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

ref|XP_002282614.1| PREDICTED: RNA pseudourine synthase 4, mitoc...   358   2e-96
gb|EXB63685.1| RNA pseudourine synthase 4 [Morus notabilis]           344   3e-92
ref|XP_002313876.2| hypothetical protein POPTR_0009s09860g [Popu...   342   2e-91
gb|EMJ01009.1| hypothetical protein PRUPE_ppa004969mg [Prunus pe...   340   8e-91
ref|XP_006346360.1| PREDICTED: RNA pseudouridine synthase 4, mit...   339   1e-90
ref|XP_002518674.1| ribosomal pseudouridine synthase, putative [...   339   1e-90
ref|XP_004230733.1| PREDICTED: RNA pseudourine synthase 4, mitoc...   338   3e-90
ref|XP_004305959.1| PREDICTED: RNA pseudourine synthase 4, mitoc...   335   2e-89
gb|EOX98365.1| Ribosomal pseudouridine synthase, putative [Theob...   334   3e-89
gb|EMJ01008.1| hypothetical protein PRUPE_ppa004969mg [Prunus pe...   333   1e-88
ref|XP_003576723.1| PREDICTED: RNA pseudourine synthase 4, mitoc...   332   2e-88
dbj|BAK06727.1| predicted protein [Hordeum vulgare subsp. vulgare]    331   3e-88
gb|EEE69173.1| hypothetical protein OsJ_28343 [Oryza sativa Japo...   331   4e-88
gb|EEC84066.1| hypothetical protein OsI_30347 [Oryza sativa Indi...   330   5e-88
gb|EMT04250.1| RNA pseudourine synthase 4, mitochondrial [Aegilo...   326   9e-87
gb|EMS51241.1| RNA pseudourine synthase 4, mitochondrial [Tritic...   325   2e-86
ref|XP_006422925.1| hypothetical protein CICLE_v10028283mg [Citr...   322   1e-85
ref|XP_006406501.1| hypothetical protein EUTSA_v10020633mg [Eutr...   319   1e-84
ref|NP_188575.1| RNA pseudourine synthase 4 [Arabidopsis thalian...   316   1e-83
ref|XP_006651552.1| PREDICTED: RNA pseudouridine synthase 4, mit...   315   2e-83

>ref|XP_002282614.1| PREDICTED: RNA pseudourine synthase 4, mitochondrial [Vitis vinifera]
            gi|296090438|emb|CBI40257.3| unnamed protein product
            [Vitis vinifera]
          Length = 476

 Score =  358 bits (919), Expect = 2e-96
 Identities = 192/326 (58%), Positives = 238/326 (73%), Gaps = 10/326 (3%)
 Frame = -3

Query: 949  KREWRTLXXXXXXXXXXXVGKELSGLRPPAAT------ESMTALKWVRRCCPDLPMSLVQ 788
            K +W TL           +GK LSG R    T       S TALKWV RCCP LP SLVQ
Sbjct: 53   KGKWFTLPAFTPVVDASSLGKVLSGHRTDLNTGNTTAGASTTALKWVVRCCPQLPRSLVQ 112

Query: 787  KLFRLRQVRKR----VSSEIEPLSNADHPEQGRFKRVSAKESMILGEVIQITVTLQKLTN 620
            KLFRLRQVR+     ++S+I  + N +H    R KRV+AK+ M LG+ I + +T+++  +
Sbjct: 113  KLFRLRQVRRESYNMITSDIG-VQNQEH----RLKRVAAKDLMNLGDQILLPITVEEFPS 167

Query: 619  ERSGRLKYNDVENSFVRSLELYKDEAIIVINKPPGLPTQGGVGIKYSVDELAANCLEYEG 440
            E+      ND E +FV +LELYKD AIIV+NKPPGLP QGG+GIK S+DELAA  L Y+ 
Sbjct: 168  EKH-EYHCNDEEINFVHNLELYKDPAIIVVNKPPGLPVQGGIGIKRSLDELAATYLRYDC 226

Query: 439  SEPPRLVHRLDRDSSGVLVLGRTQSSTAVLHSLFREKTSGALSNDITGTQRAIQRKYLAL 260
            SEPPRLVHRLDRDSSG+L++GRTQ+S  +LHS+FREKT GA +NDI   +R +QR+Y AL
Sbjct: 227  SEPPRLVHRLDRDSSGILIMGRTQTSATILHSIFREKTFGASNNDIDTKKRILQRRYWAL 286

Query: 259  VIGTPRHPRGLISASLAKIVLEDGKSERIIIADNRRSTSSLHALTEYKMIGSSSQGFTWL 80
            VIG+PR PRGLISA L K+V++DGKSERI I DN ++ SS HA+TEY++I SS  G+TWL
Sbjct: 287  VIGSPRRPRGLISAPLGKVVVDDGKSERITIVDNVQTMSSQHAITEYRVIKSSCHGYTWL 346

Query: 79   ELFPLTGRKHQLRVHCADILGTPIVG 2
            EL PLTGRKHQLRVHCA++LGTPIVG
Sbjct: 347  ELSPLTGRKHQLRVHCAEVLGTPIVG 372


>gb|EXB63685.1| RNA pseudourine synthase 4 [Morus notabilis]
          Length = 470

 Score =  344 bits (883), Expect = 3e-92
 Identities = 176/321 (54%), Positives = 233/321 (72%), Gaps = 7/321 (2%)
 Frame = -3

Query: 943  EWRTLXXXXXXXXXXXVGKELSGLRPP-------AATESMTALKWVRRCCPDLPMSLVQK 785
            +W TL           +GK ++G +         + + + TALKWV RCCP+LP SLVQK
Sbjct: 48   KWFTLPPHTATVDGAVLGKAIAGAKDDDVKVLQASKSAATTALKWVVRCCPELPRSLVQK 107

Query: 784  LFRLRQVRKRVSSEIEPLSNADHPEQGRFKRVSAKESMILGEVIQITVTLQKLTNERSGR 605
            LFRLRQVR R S  +E  +  D   + R +RVSAK+S+ LG+ I + +++++L  E+   
Sbjct: 108  LFRLRQVR-RESFNVEDCNAGDQLGKPRLRRVSAKDSLNLGDKIFLPISVKELPVEKK-E 165

Query: 604  LKYNDVENSFVRSLELYKDEAIIVINKPPGLPTQGGVGIKYSVDELAANCLEYEGSEPPR 425
               N+ E  F+RSLELYKD AI+V+NKPPGLP QGG+GIK S+D+LA  CL Y+ +EPPR
Sbjct: 166  CFCNEEEVKFIRSLELYKDPAIVVVNKPPGLPVQGGIGIKTSLDQLAVTCLSYDYTEPPR 225

Query: 424  LVHRLDRDSSGVLVLGRTQSSTAVLHSLFREKTSGALSNDITGTQRAIQRKYLALVIGTP 245
            LVHRLDRD SG+LV+GRTQ+S  VLHS+FREKT GA +++    +  +QR+Y A VIG+P
Sbjct: 226  LVHRLDRDCSGILVMGRTQTSATVLHSIFREKTFGASNDETVKGKIVLQRRYWAFVIGSP 285

Query: 244  RHPRGLISASLAKIVLEDGKSERIIIADNRRSTSSLHALTEYKMIGSSSQGFTWLELFPL 65
            RHP GLISA L K+VL++GKS+RI + +   + SS HA+T+YK+IGSSS G+TWLEL PL
Sbjct: 286  RHPNGLISAPLRKVVLDNGKSDRITVVNGSHTLSSQHAITKYKVIGSSSHGYTWLELSPL 345

Query: 64   TGRKHQLRVHCADILGTPIVG 2
            TGRKHQLRVHCA++LGTP+VG
Sbjct: 346  TGRKHQLRVHCAEVLGTPMVG 366


>ref|XP_002313876.2| hypothetical protein POPTR_0009s09860g [Populus trichocarpa]
           gi|550331407|gb|EEE87831.2| hypothetical protein
           POPTR_0009s09860g [Populus trichocarpa]
          Length = 471

 Score =  342 bits (877), Expect = 2e-91
 Identities = 175/314 (55%), Positives = 231/314 (73%)
 Frame = -3

Query: 943 EWRTLXXXXXXXXXXXVGKELSGLRPPAATESMTALKWVRRCCPDLPMSLVQKLFRLRQV 764
           +W TL           +G  LS   P  +    TALKWV RCCP+LP +LVQKLFRLRQV
Sbjct: 57  KWFTLPPYTSTINGSVLGIALSARIPAKSASETTALKWVLRCCPELPRNLVQKLFRLRQV 116

Query: 763 RKRVSSEIEPLSNADHPEQGRFKRVSAKESMILGEVIQITVTLQKLTNERSGRLKYNDVE 584
           R R S  +E  +  D  ++ R KRV+AK+SM +G+ I + ++++ L  E+      N+ E
Sbjct: 117 R-RESPVMESCNLGDQGQEHRLKRVAAKDSMDVGDRIFLPISVKVLPAEKQD-CHCNEEE 174

Query: 583 NSFVRSLELYKDEAIIVINKPPGLPTQGGVGIKYSVDELAANCLEYEGSEPPRLVHRLDR 404
            +F+R LELYKD AIIV+NKPPG+P QGG+GIK S+DEL+A+C   + SEPPRLVHRLDR
Sbjct: 175 INFIRGLELYKDAAIIVVNKPPGMPVQGGIGIKRSLDELSASCFSSDYSEPPRLVHRLDR 234

Query: 403 DSSGVLVLGRTQSSTAVLHSLFREKTSGALSNDITGTQRAIQRKYLALVIGTPRHPRGLI 224
           D SG+LV+GRTQ+S  VLH++FREKT  A ++D+   +R +QRKY ALVIG+PR P+GLI
Sbjct: 235 DCSGILVMGRTQTSATVLHAIFREKTLAASNDDVGNKRRILQRKYWALVIGSPRRPKGLI 294

Query: 223 SASLAKIVLEDGKSERIIIADNRRSTSSLHALTEYKMIGSSSQGFTWLELFPLTGRKHQL 44
           SA L K+V+++GKS+RI + +N ++ SS HA+T+Y++I  SS GFTWLEL PLTGRKHQL
Sbjct: 295 SAPLGKVVVDNGKSDRITVVENSQNLSSQHAVTQYRVI-ESSHGFTWLELSPLTGRKHQL 353

Query: 43  RVHCADILGTPIVG 2
           RVHCA++LGTPIVG
Sbjct: 354 RVHCAEVLGTPIVG 367


>gb|EMJ01009.1| hypothetical protein PRUPE_ppa004969mg [Prunus persica]
          Length = 483

 Score =  340 bits (871), Expect = 8e-91
 Identities = 187/346 (54%), Positives = 241/346 (69%), Gaps = 20/346 (5%)
 Frame = -3

Query: 979  TTDADERTRPKR--EWRTLXXXXXXXXXXXVGKELSGLRP----------PAATESMT-- 842
            TT+     R KR  +W TL           +GKELS  R            A+T S T  
Sbjct: 35   TTETFHEDREKRGEKWFTLPPFTATINGSALGKELSRNRSYGRDVITKTATASTTSTTTT 94

Query: 841  ALKWVRRCCPDLPMSLVQKLFRLRQVRKRVSSEIEPLSNADHPEQGRFKRVSAKESMILG 662
            ALKWV RCCP+LP SLVQKLFRLRQVR R S ++E         +   KRV+AK+SM +G
Sbjct: 95   ALKWVTRCCPELPRSLVQKLFRLRQVR-RESCDMECSGEGVEALERPLKRVAAKDSMNVG 153

Query: 661  EVIQITVTLQKLTNERSG------RLKYNDVENSFVRSLELYKDEAIIVINKPPGLPTQG 500
            + I + +++Q+  N++            ++ E +F+RSLELYKD AIIVINKPPG+P QG
Sbjct: 154  DRIHLPLSVQEFPNDKQELPNDKKECYCSEEEVTFIRSLELYKDPAIIVINKPPGMPVQG 213

Query: 499  GVGIKYSVDELAANCLEYEGSEPPRLVHRLDRDSSGVLVLGRTQSSTAVLHSLFREKTSG 320
            G+GIK S+DELAA CL Y+ SEPPRLVHRLDRDSSG+LV+GRTQ+S  VLHS+FREKT G
Sbjct: 214  GIGIKRSLDELAAACLSYDFSEPPRLVHRLDRDSSGILVMGRTQTSATVLHSIFREKTFG 273

Query: 319  ALSNDITGTQRAIQRKYLALVIGTPRHPRGLISASLAKIVLEDGKSERIIIADNRRSTSS 140
            A +++I   +R +QR+Y ALVIG+PR  +GLISA L K+V+++GKS+RI I ++ ++  S
Sbjct: 274  ASNDEIDDAKRILQRRYWALVIGSPRQRKGLISAPLGKVVVDNGKSDRITIVNDSQTLPS 333

Query: 139  LHALTEYKMIGSSSQGFTWLELFPLTGRKHQLRVHCADILGTPIVG 2
             HA+T+YK+IGS   G+TWLEL PLTGRKHQLRVHCA++L TPIVG
Sbjct: 334  QHAITKYKVIGSPCPGYTWLELTPLTGRKHQLRVHCAEVLRTPIVG 379


>ref|XP_006346360.1| PREDICTED: RNA pseudouridine synthase 4, mitochondrial-like
           [Solanum tuberosum]
          Length = 467

 Score =  339 bits (869), Expect = 1e-90
 Identities = 176/319 (55%), Positives = 231/319 (72%), Gaps = 3/319 (0%)
 Frame = -3

Query: 949 KREWRTLXXXXXXXXXXXVGKELSGLRPPA---ATESMTALKWVRRCCPDLPMSLVQKLF 779
           K +W TL           +G+EL+G++      +T +MTALKWV+RCCP+LP SLVQKLF
Sbjct: 55  KAKWLTLPPFTATVNGAALGRELAGVKMDVKENSTNTMTALKWVQRCCPELPKSLVQKLF 114

Query: 778 RLRQVRKRVSSEIEPLSNADHPEQGRFKRVSAKESMILGEVIQITVTLQKLTNERSGRLK 599
           RLRQVR+          ++ + E+ R KRVSAKESM +G+ I + +T+QK  +E+     
Sbjct: 115 RLRQVRR----------DSSNVEEQRPKRVSAKESMNVGDRIFLPITVQKFPSEKVVYYP 164

Query: 598 YNDVENSFVRSLELYKDEAIIVINKPPGLPTQGGVGIKYSVDELAANCLEYEGSEPPRLV 419
            ++ E  FV SLELYKD  I+V+NKPPG+P QGG+GIK S+DELAA  + +E SE PRLV
Sbjct: 165 SSEEERKFVHSLELYKDPEIVVVNKPPGMPVQGGIGIKRSLDELAAKYMRHEYSEAPRLV 224

Query: 418 HRLDRDSSGVLVLGRTQSSTAVLHSLFREKTSGALSNDITGTQRAIQRKYLALVIGTPRH 239
           HRLDRD SG+LV+GRTQ S + LHS+FREKT  + + D+   +R +Q+KY ALVIG PR 
Sbjct: 225 HRLDRDCSGLLVMGRTQLSASALHSIFREKTFDSQNEDLESKKRILQKKYWALVIGCPRR 284

Query: 238 PRGLISASLAKIVLEDGKSERIIIADNRRSTSSLHALTEYKMIGSSSQGFTWLELFPLTG 59
             G+ISA L K+VL++GKSERI I  + R+ S+ +A+TEY++IGSS +G+TWLEL PLTG
Sbjct: 285 SGGIISAPLGKLVLDNGKSERITIMSDVRAPSAQYAVTEYRIIGSSEKGYTWLELSPLTG 344

Query: 58  RKHQLRVHCADILGTPIVG 2
           RKHQLRVHCA+ LGTPIVG
Sbjct: 345 RKHQLRVHCAEALGTPIVG 363


>ref|XP_002518674.1| ribosomal pseudouridine synthase, putative [Ricinus communis]
            gi|223542055|gb|EEF43599.1| ribosomal pseudouridine
            synthase, putative [Ricinus communis]
          Length = 536

 Score =  339 bits (869), Expect = 1e-90
 Identities = 173/297 (58%), Positives = 225/297 (75%)
 Frame = -3

Query: 892  GKELSGLRPPAATESMTALKWVRRCCPDLPMSLVQKLFRLRQVRKRVSSEIEPLSNADHP 713
            GK LS      A+   TALKWV RCCP+LP +LVQKLFRLRQV++      E L+  D  
Sbjct: 144  GKALSATATAKASTETTALKWVLRCCPELPRNLVQKLFRLRQVKR------ELLNVGDGE 197

Query: 712  EQGRFKRVSAKESMILGEVIQITVTLQKLTNERSGRLKYNDVENSFVRSLELYKDEAIIV 533
             + + KRV+AK+ M +G+ I + +++Q L  E+  +    + E +F+R LELYKDEAIIV
Sbjct: 198  MEHKTKRVAAKDLMNVGDRIFLPISVQALPFEKQ-KCHCGEKEANFIRGLELYKDEAIIV 256

Query: 532  INKPPGLPTQGGVGIKYSVDELAANCLEYEGSEPPRLVHRLDRDSSGVLVLGRTQSSTAV 353
            +NKPPG+P QGG+GIK S DELAA+CL Y+ SEPPRLVHRLDRDSSG+LV+GRTQ+ST V
Sbjct: 257  VNKPPGMPVQGGIGIKSSFDELAASCLSYDYSEPPRLVHRLDRDSSGILVMGRTQTSTMV 316

Query: 352  LHSLFREKTSGALSNDITGTQRAIQRKYLALVIGTPRHPRGLISASLAKIVLEDGKSERI 173
            LHS+FREKT  A ++DI   +R +QRKY ALVIG+PR  +G+ISA L K+V++DGKS+RI
Sbjct: 317  LHSVFREKTFAASNHDIGERRRILQRKYWALVIGSPRRQKGIISAPLGKVVVDDGKSDRI 376

Query: 172  IIADNRRSTSSLHALTEYKMIGSSSQGFTWLELFPLTGRKHQLRVHCADILGTPIVG 2
             + +N  STS  HA+T+Y+++  SS G+ WLEL P+TGRKHQLRVHCA++LGTPIVG
Sbjct: 377  TVVENAESTSFQHAVTQYRVM-ESSHGYAWLELSPITGRKHQLRVHCAEVLGTPIVG 432


>ref|XP_004230733.1| PREDICTED: RNA pseudourine synthase 4, mitochondrial-like [Solanum
           lycopersicum]
          Length = 467

 Score =  338 bits (866), Expect = 3e-90
 Identities = 176/319 (55%), Positives = 230/319 (72%), Gaps = 3/319 (0%)
 Frame = -3

Query: 949 KREWRTLXXXXXXXXXXXVGKELSGLRPPA---ATESMTALKWVRRCCPDLPMSLVQKLF 779
           K +W TL           +G+EL+G++      +T +MTALKWV+RCCP+LP SLVQKLF
Sbjct: 55  KAKWLTLPPFTAAVNGAALGRELAGVKMDVNENSTNTMTALKWVQRCCPELPKSLVQKLF 114

Query: 778 RLRQVRKRVSSEIEPLSNADHPEQGRFKRVSAKESMILGEVIQITVTLQKLTNERSGRLK 599
           RLRQVR+          ++ + E+ R KRVSAKESM +G+ I + +T+QK  +E+     
Sbjct: 115 RLRQVRR----------DSSNVEEQRPKRVSAKESMNVGDRIFLPITVQKFPSEKVVYYP 164

Query: 598 YNDVENSFVRSLELYKDEAIIVINKPPGLPTQGGVGIKYSVDELAANCLEYEGSEPPRLV 419
            ++ E  FV SLELYKD  IIV+NKPPG+P QGG+GIK S+DELAA  + ++ SE PRLV
Sbjct: 165 SSEEERKFVHSLELYKDAEIIVVNKPPGMPVQGGIGIKRSLDELAAKYMSHQYSEAPRLV 224

Query: 418 HRLDRDSSGVLVLGRTQSSTAVLHSLFREKTSGALSNDITGTQRAIQRKYLALVIGTPRH 239
           HRLDRD SG+LV+GRTQ S + LHS+FREKT  + + D+   +R +Q+KY ALVIG PR 
Sbjct: 225 HRLDRDCSGLLVMGRTQLSASALHSIFREKTFDSQNEDLESKKRILQKKYWALVIGCPRR 284

Query: 238 PRGLISASLAKIVLEDGKSERIIIADNRRSTSSLHALTEYKMIGSSSQGFTWLELFPLTG 59
             G+ISA L K+VL++GKSERI I  + R  S+ +A+TEY++IGSS +G+TWLEL PLTG
Sbjct: 285 SGGIISAPLGKLVLDNGKSERITIMSDVREPSAQYAVTEYRIIGSSEKGYTWLELSPLTG 344

Query: 58  RKHQLRVHCADILGTPIVG 2
           RKHQLRVHCA+ LGTPIVG
Sbjct: 345 RKHQLRVHCAEALGTPIVG 363


>ref|XP_004305959.1| PREDICTED: RNA pseudourine synthase 4, mitochondrial-like [Fragaria
            vesca subsp. vesca]
          Length = 476

 Score =  335 bits (859), Expect = 2e-89
 Identities = 179/337 (53%), Positives = 229/337 (67%), Gaps = 11/337 (3%)
 Frame = -3

Query: 979  TTDADERTRPKR--EWRTLXXXXXXXXXXXVGKELSG------LRPPAATESMTALKWVR 824
            TT      + KR  +W TL           +G+ELS          P+A  + TALKWV 
Sbjct: 37   TTQTVHEDKQKRGNKWFTLPPFTDTVNGAALGRELSRSVGRDVYAKPSAAAATTALKWVT 96

Query: 823  RCCPDLPMSLVQKLFRLRQVRKRVSS---EIEPLSNADHPEQGRFKRVSAKESMILGEVI 653
            RCCP++P +LVQKLFRLRQVR+  S     ++PL           KRV  K+SM LG+ I
Sbjct: 97   RCCPEIPRNLVQKLFRLRQVRREASDMDQSVQPL-----------KRVGTKDSMNLGDRI 145

Query: 652  QITVTLQKLTNERSGRLKYNDVENSFVRSLELYKDEAIIVINKPPGLPTQGGVGIKYSVD 473
             + +++++  + +      ++ E  F+RSL LYKD AIIVINKPPGLP QGG+GIK S+D
Sbjct: 146  CLPISVKEFPDHKQKEGHCSEEEAEFIRSLVLYKDPAIIVINKPPGLPVQGGIGIKRSLD 205

Query: 472  ELAANCLEYEGSEPPRLVHRLDRDSSGVLVLGRTQSSTAVLHSLFREKTSGALSNDITGT 293
            ELAA CL Y+ S+PPRLVHRLDRD SG+LV+GRTQ+S  VLHS+FREKT GA  + I   
Sbjct: 206  ELAATCLSYDLSQPPRLVHRLDRDCSGILVMGRTQTSATVLHSVFREKTFGASDDVIKHA 265

Query: 292  QRAIQRKYLALVIGTPRHPRGLISASLAKIVLEDGKSERIIIADNRRSTSSLHALTEYKM 113
            +  +QR+YLALVIG+PR   GLIS  L K+V+++GKS+RI I +  +   S HA+T+YK+
Sbjct: 266  KSILQRRYLALVIGSPRQQEGLISVPLGKVVVDNGKSDRITILNKAQCLPSQHAITKYKV 325

Query: 112  IGSSSQGFTWLELFPLTGRKHQLRVHCADILGTPIVG 2
            IGSS  GFTWLEL PLTGRKHQLRVHCA++LGTPIVG
Sbjct: 326  IGSSCPGFTWLELIPLTGRKHQLRVHCAEVLGTPIVG 362


>gb|EOX98365.1| Ribosomal pseudouridine synthase, putative [Theobroma cacao]
          Length = 477

 Score =  334 bits (857), Expect = 3e-89
 Identities = 169/324 (52%), Positives = 230/324 (70%)
 Frame = -3

Query: 973  DADERTRPKREWRTLXXXXXXXXXXXVGKELSGLRPPAATESMTALKWVRRCCPDLPMSL 794
            D +   + K +W TL           +G +LSG     A    TA+KWV RCCP+LP SL
Sbjct: 52   DGNSEKKKKNKWFTLPPFTKTVNASVLGAKLSGKPHSKAANETTAVKWVMRCCPELPRSL 111

Query: 793  VQKLFRLRQVRKRVSSEIEPLSNADHPEQGRFKRVSAKESMILGEVIQITVTLQKLTNER 614
            VQKLFRLRQVR R S  +E   +    +  + KRV AK+++ +G+ I +  ++++   E+
Sbjct: 112  VQKLFRLRQVR-RESHVLEVAGDGCQVQTVQLKRVGAKDALNIGDRIFLPFSVREFREEK 170

Query: 613  SGRLKYNDVENSFVRSLELYKDEAIIVINKPPGLPTQGGVGIKYSVDELAANCLEYEGSE 434
                   + E +F+R LELYKD AIIV+NKPPG+P QGG+GIK+S+D+LAA CL ++ SE
Sbjct: 171  Q-ESGCTEEELNFIRGLELYKDPAIIVLNKPPGMPVQGGIGIKWSLDKLAAACLCFDYSE 229

Query: 433  PPRLVHRLDRDSSGVLVLGRTQSSTAVLHSLFREKTSGALSNDITGTQRAIQRKYLALVI 254
            PPRLVHRLDRDSSG+LV+GRTQ S  +LHS+FRE+T+ A  +D+   +R +Q++Y ALVI
Sbjct: 230  PPRLVHRLDRDSSGILVMGRTQMSATILHSVFREETNDASKDDVDNEKRILQKRYWALVI 289

Query: 253  GTPRHPRGLISASLAKIVLEDGKSERIIIADNRRSTSSLHALTEYKMIGSSSQGFTWLEL 74
            G+PR P+G+I A L K+V++DGKS+RI + DN +  SS  A TEY++I ++S G+TWLEL
Sbjct: 290  GSPRRPKGMIVAPLRKVVVDDGKSDRITVFDNSQIVSSQRAKTEYQVIKTTSHGYTWLEL 349

Query: 73   FPLTGRKHQLRVHCADILGTPIVG 2
             PLTGRKHQLRVHCA++LGTPIVG
Sbjct: 350  SPLTGRKHQLRVHCAEVLGTPIVG 373


>gb|EMJ01008.1| hypothetical protein PRUPE_ppa004969mg [Prunus persica]
          Length = 481

 Score =  333 bits (853), Expect = 1e-88
 Identities = 186/346 (53%), Positives = 240/346 (69%), Gaps = 20/346 (5%)
 Frame = -3

Query: 979  TTDADERTRPKR--EWRTLXXXXXXXXXXXVGKELSGLRP----------PAATESMT-- 842
            TT+     R KR  +W TL           +GKELS  R            A+T S T  
Sbjct: 35   TTETFHEDREKRGEKWFTLPPFTATINGSALGKELSRNRSYGRDVITKTATASTTSTTTT 94

Query: 841  ALKWVRRCCPDLPMSLVQKLFRLRQVRKRVSSEIEPLSNADHPEQGRFKRVSAKESMILG 662
            ALKWV RCCP+LP SLVQKLFRLRQVR R S ++E         +   KRV+AK+SM +G
Sbjct: 95   ALKWVTRCCPELPRSLVQKLFRLRQVR-RESCDMECSGEGVEALERPLKRVAAKDSMNVG 153

Query: 661  EVIQITVTLQKLTNERSG------RLKYNDVENSFVRSLELYKDEAIIVINKPPGLPTQG 500
            + I + +++Q+  N++            ++ E +F+RSLELYKD AIIVINKPPG+P QG
Sbjct: 154  DRIHLPLSVQEFPNDKQELPNDKKECYCSEEEVTFIRSLELYKDPAIIVINKPPGMPVQG 213

Query: 499  GVGIKYSVDELAANCLEYEGSEPPRLVHRLDRDSSGVLVLGRTQSSTAVLHSLFREKTSG 320
            G+GIK S+DELAA CL Y+ SEPPRLVHRLDRDSSG+LV+GRTQ+S  VLHS+FREKT G
Sbjct: 214  GIGIKRSLDELAAACLSYDFSEPPRLVHRLDRDSSGILVMGRTQTSATVLHSIFREKTFG 273

Query: 319  ALSNDITGTQRAIQRKYLALVIGTPRHPRGLISASLAKIVLEDGKSERIIIADNRRSTSS 140
            A +++I   +R +QR+Y ALVIG+PR  +GLISA L K+V+++GKS+RI I ++ ++  S
Sbjct: 274  ASNDEIDDAKRILQRRYWALVIGSPRQRKGLISAPLGKVVVDNGKSDRITIVNDSQTLPS 333

Query: 139  LHALTEYKMIGSSSQGFTWLELFPLTGRKHQLRVHCADILGTPIVG 2
             HA+T+YK+IGS    +TWLEL PLTGRKHQLRVHCA++L TPIVG
Sbjct: 334  QHAITKYKVIGSPC--YTWLELTPLTGRKHQLRVHCAEVLRTPIVG 377


>ref|XP_003576723.1| PREDICTED: RNA pseudourine synthase 4, mitochondrial-like
            [Brachypodium distachyon]
          Length = 465

 Score =  332 bits (851), Expect = 2e-88
 Identities = 183/326 (56%), Positives = 226/326 (69%), Gaps = 1/326 (0%)
 Frame = -3

Query: 976  TDADERTRPKREWRTLXXXXXXXXXXXVGKELSGLRPPAA-TESMTALKWVRRCCPDLPM 800
            T + E    K  WR L               L G    A  T S TA++WVRRCCPDLP 
Sbjct: 40   TGSKEDRGNKNRWRELPPFAPLDITAAARAILRGKGGEAEETSSSTAIRWVRRCCPDLPA 99

Query: 799  SLVQKLFRLRQVRKRVSSEIEPLSNADHPEQGRFKRVSAKESMILGEVIQITVTLQKLTN 620
            SLVQKLFRLR+V+K   +  E  S     EQ + KRVSAK+ ++ G+ + + V +Q+ + 
Sbjct: 100  SLVQKLFRLRKVKKNALTA-ETSSTDASAEQFQLKRVSAKDYLLPGDTLFLPVNIQESSV 158

Query: 619  ERSGRLKYNDVENSFVRSLELYKDEAIIVINKPPGLPTQGGVGIKYSVDELAANCLEYEG 440
                R   N  E  F+RSLE+YKD+AIIVINKPPG+P QGGVGIK S+D LA    E   
Sbjct: 159  AEKTRKFDNRNEIDFLRSLEIYKDKAIIVINKPPGMPVQGGVGIKNSIDVLAP-MFEENS 217

Query: 439  SEPPRLVHRLDRDSSGVLVLGRTQSSTAVLHSLFREKTSGALSNDITGTQRAIQRKYLAL 260
            SE PRLVHRLDRD SGVLVLGRTQ S ++LH++FREKT+ AL++   GTQ+ +QRKY+AL
Sbjct: 218  SEAPRLVHRLDRDCSGVLVLGRTQLSASILHAIFREKTADALAD---GTQQVLQRKYVAL 274

Query: 259  VIGTPRHPRGLISASLAKIVLEDGKSERIIIADNRRSTSSLHALTEYKMIGSSSQGFTWL 80
            VIGTPRH +GL+SA LAK++L+DGKSER+ +     +TS   ALTEY++I S  QGFTWL
Sbjct: 275  VIGTPRHSKGLLSAPLAKVLLQDGKSERLTVKAGPNTTSVQDALTEYRVIESCPQGFTWL 334

Query: 79   ELFPLTGRKHQLRVHCADILGTPIVG 2
            ELFPLTGRKHQLRVHCA++LGTPIVG
Sbjct: 335  ELFPLTGRKHQLRVHCAEVLGTPIVG 360


>dbj|BAK06727.1| predicted protein [Hordeum vulgare subsp. vulgare]
          Length = 472

 Score =  331 bits (849), Expect = 3e-88
 Identities = 173/297 (58%), Positives = 221/297 (74%)
 Frame = -3

Query: 892 GKELSGLRPPAATESMTALKWVRRCCPDLPMSLVQKLFRLRQVRKRVSSEIEPLSNADHP 713
           G E+ G      + + TA++WVRRCCPDLP SLVQKLFRLR+V+K   +  E  S     
Sbjct: 82  GDEIEG------SSNSTAIRWVRRCCPDLPASLVQKLFRLRKVKKNAVTA-ETSSTHASA 134

Query: 712 EQGRFKRVSAKESMILGEVIQITVTLQKLTNERSGRLKYNDVENSFVRSLELYKDEAIIV 533
           EQ R +RVSAK+ ++ G+ + + V +Q+ +     R   N  E  F+RSLE+YKD+AIIV
Sbjct: 135 EQFRLRRVSAKDHLLPGDTLFLPVNIQESSVAEKARKFDNRNEIDFLRSLEIYKDKAIIV 194

Query: 532 INKPPGLPTQGGVGIKYSVDELAANCLEYEGSEPPRLVHRLDRDSSGVLVLGRTQSSTAV 353
           +NKPPG+P QGGVGIK S+D LA    E   S+ PRLVHRLDRD SGVLVLGRTQ S ++
Sbjct: 195 VNKPPGMPVQGGVGIKNSIDVLAP-MFEENSSDAPRLVHRLDRDCSGVLVLGRTQLSASI 253

Query: 352 LHSLFREKTSGALSNDITGTQRAIQRKYLALVIGTPRHPRGLISASLAKIVLEDGKSERI 173
           LH++FREKT+ AL++   GTQ+ +QRKY+ALV+GTPRHP+GL+SA LAK++L+DGKSER+
Sbjct: 254 LHAIFREKTADALAD---GTQQVLQRKYVALVMGTPRHPKGLLSAPLAKVLLQDGKSERL 310

Query: 172 IIADNRRSTSSLHALTEYKMIGSSSQGFTWLELFPLTGRKHQLRVHCADILGTPIVG 2
            +     +TS   ALTEY++I S  QGFTWLELFPLTGRKHQLRVHCA++LGTPIVG
Sbjct: 311 TVRAGPNTTSVQDALTEYRVIESCPQGFTWLELFPLTGRKHQLRVHCAEVLGTPIVG 367


>gb|EEE69173.1| hypothetical protein OsJ_28343 [Oryza sativa Japonica Group]
          Length = 465

 Score =  331 bits (848), Expect = 4e-88
 Identities = 172/285 (60%), Positives = 220/285 (77%), Gaps = 1/285 (0%)
 Frame = -3

Query: 853 ESMTALKWVRRCCPDLPMSLVQKLFRLRQVRKRVSSEIEPLSNAD-HPEQGRFKRVSAKE 677
           +  TA+KWVRRCCPDLP SLVQKLFRLR+V+K V +    +S+AD   EQ R +RVSAK+
Sbjct: 82  QGATAIKWVRRCCPDLPTSLVQKLFRLRKVKKNVVTA--EISSADASAEQHRLRRVSAKD 139

Query: 676 SMILGEVIQITVTLQKLTNERSGRLKYNDVENSFVRSLELYKDEAIIVINKPPGLPTQGG 497
            ++ G+++ + V L++ +     +   N  E +F+R LE+YKDEAIIV+NKPPG+P QGG
Sbjct: 140 QLMPGDILFLPVNLKESSVAEKTKKFDNRNEINFLRGLEIYKDEAIIVVNKPPGMPVQGG 199

Query: 496 VGIKYSVDELAANCLEYEGSEPPRLVHRLDRDSSGVLVLGRTQSSTAVLHSLFREKTSGA 317
           VGIK S+D LA+   E   SE PRLVHRLDRD SG+LVLGR Q ST++LH++FREKT+ A
Sbjct: 200 VGIKNSIDVLAS-MFEENSSEAPRLVHRLDRDCSGILVLGRNQLSTSMLHAIFREKTADA 258

Query: 316 LSNDITGTQRAIQRKYLALVIGTPRHPRGLISASLAKIVLEDGKSERIIIADNRRSTSSL 137
           L++   GTQ  +QRKY+ALVIGTPRHP+GL+SA LAKI+L+DGKSER+ I  +  + S  
Sbjct: 259 LAD---GTQHVLQRKYVALVIGTPRHPKGLLSAPLAKILLQDGKSERLTIRASSNAASVQ 315

Query: 136 HALTEYKMIGSSSQGFTWLELFPLTGRKHQLRVHCADILGTPIVG 2
            ALTEY++I S  QG+TWLELFP TGRKHQLRVHCA++LGTPIVG
Sbjct: 316 DALTEYRVIESCPQGYTWLELFPRTGRKHQLRVHCAEVLGTPIVG 360


>gb|EEC84066.1| hypothetical protein OsI_30347 [Oryza sativa Indica Group]
          Length = 465

 Score =  330 bits (847), Expect = 5e-88
 Identities = 171/285 (60%), Positives = 220/285 (77%), Gaps = 1/285 (0%)
 Frame = -3

Query: 853 ESMTALKWVRRCCPDLPMSLVQKLFRLRQVRKRVSSEIEPLSNAD-HPEQGRFKRVSAKE 677
           +  TA+KWVRRCCPDLP SLVQKLFRLR+V+K V +    +S+AD   EQ R +RVSAK+
Sbjct: 82  QGATAIKWVRRCCPDLPTSLVQKLFRLRKVKKNVVTA--EISSADASAEQHRLRRVSAKD 139

Query: 676 SMILGEVIQITVTLQKLTNERSGRLKYNDVENSFVRSLELYKDEAIIVINKPPGLPTQGG 497
            ++ G+++ + V L++ +     +   N  E +F+R LE+YKDEAIIV+NKPPG+P QGG
Sbjct: 140 QLMPGDILFLPVNLKESSVAEKTKKFDNRNEINFLRGLEIYKDEAIIVVNKPPGMPVQGG 199

Query: 496 VGIKYSVDELAANCLEYEGSEPPRLVHRLDRDSSGVLVLGRTQSSTAVLHSLFREKTSGA 317
           VGIK S+D LA+   E   SE PRLVHRLDRD SG+LVLGR Q ST++LH++FREKT+ A
Sbjct: 200 VGIKNSIDVLAS-MFEENSSEAPRLVHRLDRDCSGILVLGRNQLSTSMLHAIFREKTADA 258

Query: 316 LSNDITGTQRAIQRKYLALVIGTPRHPRGLISASLAKIVLEDGKSERIIIADNRRSTSSL 137
           L++   GTQ  +QRKY+ALVIGTPRHP+GL+SA LAKI+L+DGKSER+ +  +  + S  
Sbjct: 259 LAD---GTQHVLQRKYVALVIGTPRHPKGLLSAPLAKILLQDGKSERLTVRASSNAASVQ 315

Query: 136 HALTEYKMIGSSSQGFTWLELFPLTGRKHQLRVHCADILGTPIVG 2
            ALTEY++I S  QG+TWLELFP TGRKHQLRVHCA++LGTPIVG
Sbjct: 316 DALTEYRVIESCPQGYTWLELFPRTGRKHQLRVHCAEVLGTPIVG 360


>gb|EMT04250.1| RNA pseudourine synthase 4, mitochondrial [Aegilops tauschii]
          Length = 468

 Score =  326 bits (836), Expect = 9e-87
 Identities = 171/297 (57%), Positives = 218/297 (73%)
 Frame = -3

Query: 892 GKELSGLRPPAATESMTALKWVRRCCPDLPMSLVQKLFRLRQVRKRVSSEIEPLSNADHP 713
           G E+ G        + TA++WVRRCCP LP SLVQKLFRLR+V+K   +  E  S     
Sbjct: 78  GDEIEG------NSNSTAIRWVRRCCPHLPASLVQKLFRLRKVKKNAVTA-ETSSTDASA 130

Query: 712 EQGRFKRVSAKESMILGEVIQITVTLQKLTNERSGRLKYNDVENSFVRSLELYKDEAIIV 533
           EQ R +RVSAK+ ++ G+ + + V +Q+       R   N  E  F+RSLE+YKD+AIIV
Sbjct: 131 EQFRLRRVSAKDHLVPGDTLFLPVNIQESPVAEKARKFDNRNEIDFLRSLEIYKDKAIIV 190

Query: 532 INKPPGLPTQGGVGIKYSVDELAANCLEYEGSEPPRLVHRLDRDSSGVLVLGRTQSSTAV 353
           +NKPPG+P QGGVGIK S+D LA    E   S+ PRLVHRLDRD SGVLVLGRTQ S ++
Sbjct: 191 VNKPPGMPVQGGVGIKNSIDVLAP-MFEENSSDAPRLVHRLDRDCSGVLVLGRTQLSASI 249

Query: 352 LHSLFREKTSGALSNDITGTQRAIQRKYLALVIGTPRHPRGLISASLAKIVLEDGKSERI 173
           LH++FREKT+ AL++   GTQ+ +QRKY+ALV+GTPRHP+GL+SA LAK++L+DGKSER+
Sbjct: 250 LHAIFREKTADALAD---GTQQVLQRKYVALVMGTPRHPKGLLSAPLAKVLLQDGKSERL 306

Query: 172 IIADNRRSTSSLHALTEYKMIGSSSQGFTWLELFPLTGRKHQLRVHCADILGTPIVG 2
            +     +TS   ALTEY++I S  +GFTWLELFPLTGRKHQLRVHCA++LGTPIVG
Sbjct: 307 TVRAGPNTTSVQDALTEYRVIESCPRGFTWLELFPLTGRKHQLRVHCAEVLGTPIVG 363


>gb|EMS51241.1| RNA pseudourine synthase 4, mitochondrial [Triticum urartu]
          Length = 468

 Score =  325 bits (833), Expect = 2e-86
 Identities = 170/297 (57%), Positives = 219/297 (73%)
 Frame = -3

Query: 892 GKELSGLRPPAATESMTALKWVRRCCPDLPMSLVQKLFRLRQVRKRVSSEIEPLSNADHP 713
           G E+ G      + + TA++WVRRCCP LP SLVQKLFRLR+V+K   +  E  S     
Sbjct: 78  GDEIEG------SSNSTAIRWVRRCCPHLPASLVQKLFRLRKVKKNAVTA-ETSSTDASA 130

Query: 712 EQGRFKRVSAKESMILGEVIQITVTLQKLTNERSGRLKYNDVENSFVRSLELYKDEAIIV 533
           +Q R +RVSAK+ ++ G+ + + V +Q+       R   N  E  F+RSLE+YKD+AIIV
Sbjct: 131 KQFRLRRVSAKDHLVPGDTLFLPVNIQESPVAEKARKFDNRNEIDFLRSLEIYKDKAIIV 190

Query: 532 INKPPGLPTQGGVGIKYSVDELAANCLEYEGSEPPRLVHRLDRDSSGVLVLGRTQSSTAV 353
           +NKPPG+P QGGVGIK S+D LA    E   S+ PRLVHRLDRD SGVLVLGRTQ S ++
Sbjct: 191 VNKPPGMPVQGGVGIKNSIDVLAP-MFEENSSDAPRLVHRLDRDCSGVLVLGRTQLSASI 249

Query: 352 LHSLFREKTSGALSNDITGTQRAIQRKYLALVIGTPRHPRGLISASLAKIVLEDGKSERI 173
           LH++FREKT+ AL++   GTQ+ +QRKY+ALV+GTPRHP+GL+SA LAK++L+DGKSER+
Sbjct: 250 LHAIFREKTADALAD---GTQQVLQRKYVALVMGTPRHPKGLLSAPLAKVLLQDGKSERL 306

Query: 172 IIADNRRSTSSLHALTEYKMIGSSSQGFTWLELFPLTGRKHQLRVHCADILGTPIVG 2
            +     +TS   ALTEY++I S  +GFTWLELFPLTGRKHQLRVHCA++LGTPIVG
Sbjct: 307 TVRAGPNTTSVQDALTEYRVIESCPRGFTWLELFPLTGRKHQLRVHCAEVLGTPIVG 363


>ref|XP_006422925.1| hypothetical protein CICLE_v10028283mg [Citrus clementina]
            gi|557524859|gb|ESR36165.1| hypothetical protein
            CICLE_v10028283mg [Citrus clementina]
          Length = 494

 Score =  322 bits (826), Expect = 1e-85
 Identities = 169/322 (52%), Positives = 229/322 (71%)
 Frame = -3

Query: 967  DERTRPKREWRTLXXXXXXXXXXXVGKELSGLRPPAATESMTALKWVRRCCPDLPMSLVQ 788
            DER   + +W TL           +G++L+       +E+ TALKWV +CCP LP + VQ
Sbjct: 75   DER---RGKWFTLPPFTSTIDGSALGRQLACPSKSPISET-TALKWVLQCCPGLPRNFVQ 130

Query: 787  KLFRLRQVRKRVSSEIEPLSNADHPEQGRFKRVSAKESMILGEVIQITVTLQKLTNERSG 608
            KLFRL QVR R S  ++  +N  H ++ + KRV+AK+S+ LG+ I + +++Q+ +  R  
Sbjct: 131  KLFRLSQVR-RESPSLDSSANEGHEQEIKLKRVAAKDSLKLGDRIFLPISIQE-SPSRKE 188

Query: 607  RLKYNDVENSFVRSLELYKDEAIIVINKPPGLPTQGGVGIKYSVDELAANCLEYEGSEPP 428
            +    + E  F++SLELYKD AIIVINKP G+P QGG+GI+ S+DELAA CL Y+ SEPP
Sbjct: 189  KCPCTEEEVGFIQSLELYKDSAIIVINKPHGMPVQGGIGIRRSIDELAATCLTYDYSEPP 248

Query: 427  RLVHRLDRDSSGVLVLGRTQSSTAVLHSLFREKTSGALSNDITGTQRAIQRKYLALVIGT 248
            RLVHRLDRDSSG+LV+GRTQ+S  VLHS+FREKT  A   D    +R +QR Y ALV+GT
Sbjct: 249  RLVHRLDRDSSGILVMGRTQTSATVLHSIFREKTFSASKEDNDNEKRILQRWYWALVVGT 308

Query: 247  PRHPRGLISASLAKIVLEDGKSERIIIADNRRSTSSLHALTEYKMIGSSSQGFTWLELFP 68
            PR  +G+ISA L K+V+++GKS+RI + +N +  S+ HA+T Y++I  S  G+TWL+L P
Sbjct: 309  PRCSKGVISAPLRKVVVDNGKSDRITVVNNDQIMSAQHAVTRYQVIKPSCHGYTWLKLSP 368

Query: 67   LTGRKHQLRVHCADILGTPIVG 2
            LTGRKHQLRVHCA++LGTPIVG
Sbjct: 369  LTGRKHQLRVHCAEVLGTPIVG 390


>ref|XP_006406501.1| hypothetical protein EUTSA_v10020633mg [Eutrema salsugineum]
            gi|557107647|gb|ESQ47954.1| hypothetical protein
            EUTSA_v10020633mg [Eutrema salsugineum]
          Length = 477

 Score =  319 bits (817), Expect = 1e-84
 Identities = 174/327 (53%), Positives = 227/327 (69%), Gaps = 5/327 (1%)
 Frame = -3

Query: 967  DERTRPKREWRTLXXXXXXXXXXXVGKEL--SGLRPPAATE-SMTALKWVRRCCPDLPMS 797
            D+   P+ +W TL           VGKEL   G    A+++ S TAL+W+ RC PDLP +
Sbjct: 49   DDDDDPRGKWLTLPPFSPTIDAAAVGKELFSDGDSVKASSDGSTTALRWILRCRPDLPRT 108

Query: 796  LVQKLFRLRQVRKRVSSEIEPLSNADHPEQGRFKRVSAKESMILGEVIQITVTLQKLTNE 617
            LVQKLFRLRQVR+ +S   +     D  ++ + KRV+AKES+ LG+ I + +++      
Sbjct: 109  LVQKLFRLRQVRREMSLSCD----GDELQRSQLKRVAAKESLNLGDRIYLPLSVNNDAPP 164

Query: 616  RSGRLKY--NDVENSFVRSLELYKDEAIIVINKPPGLPTQGGVGIKYSVDELAANCLEYE 443
             + +  +  ++ E  FV SL LYKD AIIV+NKP GL  QGG GIK S+DELAA CL + 
Sbjct: 165  PAKKESFCCSEEERKFVCSLVLYKDPAIIVLNKPHGLAVQGGTGIKISIDELAATCLTFG 224

Query: 442  GSEPPRLVHRLDRDSSGVLVLGRTQSSTAVLHSLFREKTSGALSNDITGTQRAIQRKYLA 263
             SE PRLVHRLDRD SG+LVLGRTQ++  VLHS+FREKTSGA +  +    ++++RKYLA
Sbjct: 225  KSESPRLVHRLDRDCSGLLVLGRTQTAATVLHSIFREKTSGASAYSVKKNIKSLKRKYLA 284

Query: 262  LVIGTPRHPRGLISASLAKIVLEDGKSERIIIADNRRSTSSLHALTEYKMIGSSSQGFTW 83
            LVIG PR  RG ISA L K+V++DGKS+RI + DN    S+ HA+TEY++I SS  G+TW
Sbjct: 285  LVIGCPRRQRGQISAPLRKVVVDDGKSDRITVNDNGELVSTQHAITEYRVIESSPHGYTW 344

Query: 82   LELFPLTGRKHQLRVHCADILGTPIVG 2
            LEL PLTGRKHQLRVHCA++LGTPI+G
Sbjct: 345  LELRPLTGRKHQLRVHCAEVLGTPILG 371


>ref|NP_188575.1| RNA pseudourine synthase 4 [Arabidopsis thaliana]
            gi|75274073|sp|Q9LT72.1|PUS4_ARATH RecName: Full=RNA
            pseudouridine synthase 4, mitochondrial; AltName:
            Full=RNA pseudouridylate synthase 4; AltName:
            Full=RNA-uridine isomerase 4; Flags: Precursor
            gi|11994467|dbj|BAB02469.1| unnamed protein product
            [Arabidopsis thaliana] gi|110737723|dbj|BAF00800.1|
            hypothetical protein [Arabidopsis thaliana]
            gi|134031916|gb|ABO45695.1| At3g19440 [Arabidopsis
            thaliana] gi|332642719|gb|AEE76240.1| RNA pseudourine
            synthase 4 [Arabidopsis thaliana]
          Length = 477

 Score =  316 bits (809), Expect = 1e-83
 Identities = 170/334 (50%), Positives = 227/334 (67%), Gaps = 8/334 (2%)
 Frame = -3

Query: 979  TTDADERTRPKREWRTLXXXXXXXXXXXVGKEL----SGLRPPAATESMTALKWVRRCCP 812
            TT  D+    + +W TL           VGK+L      ++        TAL+W+ RC P
Sbjct: 45   TTQTDDS---RGKWLTLPPFSPTIDGTAVGKDLLSDGDSVKSSTDNSKTTALRWILRCRP 101

Query: 811  DLPMSLVQKLFRLRQVRKRVSSEIEPLSNADHPEQGRFKRVSAKESMILGEVIQITVTLQ 632
            DLP +LVQKLFRLRQVR+ +S  ++     D  ++ + KRV+AKES+ +G+ I + +++ 
Sbjct: 102  DLPRTLVQKLFRLRQVRREMSMSVD----GDELQRSQLKRVAAKESLNVGDRIYLPLSVD 157

Query: 631  KLTNE----RSGRLKYNDVENSFVRSLELYKDEAIIVINKPPGLPTQGGVGIKYSVDELA 464
              T +    +    + +D E  FV SL LYKD AIIV+NKP GL  QGG GIK S+DELA
Sbjct: 158  NDTPQTPPAKKESFQCSDEERKFVCSLVLYKDPAIIVLNKPHGLAVQGGSGIKTSIDELA 217

Query: 463  ANCLEYEGSEPPRLVHRLDRDSSGVLVLGRTQSSTAVLHSLFREKTSGALSNDITGTQRA 284
            A+CL+++ SE PRLVHRLDRD SG+LVL RTQ++  VLHS+FREKT+GA +  +    ++
Sbjct: 218  ASCLKFDKSESPRLVHRLDRDCSGLLVLARTQTAATVLHSIFREKTTGASAYGVKKNVKS 277

Query: 283  IQRKYLALVIGTPRHPRGLISASLAKIVLEDGKSERIIIADNRRSTSSLHALTEYKMIGS 104
            ++RKY+ALVIG P   RG ISA L K+V++DGKSERI + DN    S+ HA+TEY++I S
Sbjct: 278  LKRKYMALVIGCPPRQRGQISAPLRKVVVDDGKSERITVNDNGELVSTQHAITEYRVIES 337

Query: 103  SSQGFTWLELFPLTGRKHQLRVHCADILGTPIVG 2
            S  G+TWLEL PLTGRKHQLRVHCA++LGTPIVG
Sbjct: 338  SPHGYTWLELRPLTGRKHQLRVHCAEVLGTPIVG 371


>ref|XP_006651552.1| PREDICTED: RNA pseudouridine synthase 4, mitochondrial-like [Oryza
           brachyantha]
          Length = 447

 Score =  315 bits (807), Expect = 2e-83
 Identities = 166/281 (59%), Positives = 206/281 (73%)
 Frame = -3

Query: 844 TALKWVRRCCPDLPMSLVQKLFRLRQVRKRVSSEIEPLSNADHPEQGRFKRVSAKESMIL 665
           TA+ WVRRCCPDLP SLV KLFRLR+V+K          N    EQ R +RVSAK+ ++ 
Sbjct: 77  TAISWVRRCCPDLPTSLVHKLFRLRKVKK----------NFVTAEQHRLRRVSAKDQLMP 126

Query: 664 GEVIQITVTLQKLTNERSGRLKYNDVENSFVRSLELYKDEAIIVINKPPGLPTQGGVGIK 485
           G++I + V  ++ +     +   N  E  F+RSLE+YKDEAIIVINKPPG+P QGG+GIK
Sbjct: 127 GDIIFLPVHPKESSIAEKTKKFDNRNEIDFLRSLEIYKDEAIIVINKPPGMPVQGGIGIK 186

Query: 484 YSVDELAANCLEYEGSEPPRLVHRLDRDSSGVLVLGRTQSSTAVLHSLFREKTSGALSND 305
            S+D LA+   E   SE PRLVHRLDRD SGVLVLGR Q ST +LH+ FREKT+ AL++ 
Sbjct: 187 NSIDVLAS-IFEENSSEAPRLVHRLDRDCSGVLVLGRNQRSTTMLHATFREKTADALAD- 244

Query: 304 ITGTQRAIQRKYLALVIGTPRHPRGLISASLAKIVLEDGKSERIIIADNRRSTSSLHALT 125
             GTQ  +QRKYLALVIGTPRHP+GL+SA LAK++L+DGKSER+ +  +  + S   ALT
Sbjct: 245 --GTQHVLQRKYLALVIGTPRHPKGLLSAPLAKVLLQDGKSERLTVRASSNAASVQDALT 302

Query: 124 EYKMIGSSSQGFTWLELFPLTGRKHQLRVHCADILGTPIVG 2
           EY++I     G+TWLELFP TGRKHQLRVHCA++LGTPIVG
Sbjct: 303 EYRVIEYCPHGYTWLELFPRTGRKHQLRVHCAEVLGTPIVG 343