BLASTX nr result
ID: Zingiber23_contig00030993
seq
BLASTX 2.2.25 [Feb-01-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= Zingiber23_contig00030993
(238 letters)
Database: ./nr
37,332,560 sequences; 13,225,080,153 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
ref|XP_002282419.1| PREDICTED: pentatricopeptide repeat-containi... 58 1e-06
gb|EOY31375.1| Pentatricopeptide repeat (PPR) superfamily protei... 58 1e-06
gb|EOY31373.1| Pentatricopeptide repeat superfamily protein isof... 58 1e-06
gb|EOY31372.1| Pentatricopeptide repeat superfamily protein isof... 58 1e-06
ref|XP_002308636.1| hypothetical protein POPTR_0006s26360g [Popu... 58 1e-06
gb|AFW69320.1| hypothetical protein ZEAMMB73_542469 [Zea mays] 57 2e-06
ref|XP_003572081.1| PREDICTED: pentatricopeptide repeat-containi... 57 2e-06
ref|XP_002437530.1| hypothetical protein SORBIDRAFT_10g028820 [S... 57 3e-06
ref|XP_004975950.1| PREDICTED: pentatricopeptide repeat-containi... 56 6e-06
ref|XP_004136469.1| PREDICTED: pentatricopeptide repeat-containi... 56 6e-06
ref|XP_002516618.1| pentatricopeptide repeat-containing protein,... 55 1e-05
>ref|XP_002282419.1| PREDICTED: pentatricopeptide repeat-containing protein At5g11310,
mitochondrial [Vitis vinifera]
gi|296081989|emb|CBI20994.3| unnamed protein product
[Vitis vinifera]
Length = 597
Score = 58.2 bits (139), Expect = 1e-06
Identities = 35/86 (40%), Positives = 47/86 (54%), Gaps = 7/86 (8%)
Frame = -1
Query: 238 SRAFDSAWXXXXXXXXXXXXA-------FSSLFRRYARAGMPSAAIRTFYYTRRHPEAVS 80
SRAFDSAW F+ L RRYARAGM +AIRTF + +++
Sbjct: 150 SRAFDSAWLLVLDRIEGGEEPELVSSNTFAVLIRRYARAGMTLSAIRTFEFA-FSLDSIR 208
Query: 79 AEDGASDPFELLIDALCKEGHTKVAA 2
D F++L+D+LCKEGH +VA+
Sbjct: 209 DRDSEWSLFKILLDSLCKEGHVRVAS 234
>gb|EOY31375.1| Pentatricopeptide repeat (PPR) superfamily protein, putative
isoform 4, partial [Theobroma cacao]
gi|508784121|gb|EOY31377.1| Pentatricopeptide repeat
(PPR) superfamily protein, putative isoform 4, partial
[Theobroma cacao]
Length = 560
Score = 57.8 bits (138), Expect = 1e-06
Identities = 28/58 (48%), Positives = 39/58 (67%)
Frame = -1
Query: 175 FSSLFRRYARAGMPSAAIRTFYYTRRHPEAVSAEDGASDPFELLIDALCKEGHTKVAA 2
F L RRYARAGMP AIRTF + + E + D ++ FE+++D+LCKEGH +V +
Sbjct: 137 FVILIRRYARAGMPQPAIRTFEFA-KSLEQICNSDEETNLFEIMLDSLCKEGHVRVVS 193
>gb|EOY31373.1| Pentatricopeptide repeat superfamily protein isoform 2, partial
[Theobroma cacao]
Length = 584
Score = 57.8 bits (138), Expect = 1e-06
Identities = 28/58 (48%), Positives = 39/58 (67%)
Frame = -1
Query: 175 FSSLFRRYARAGMPSAAIRTFYYTRRHPEAVSAEDGASDPFELLIDALCKEGHTKVAA 2
F L RRYARAGMP AIRTF + + E + D ++ FE+++D+LCKEGH +V +
Sbjct: 161 FVILIRRYARAGMPQPAIRTFEFA-KSLEQICNSDEETNLFEIMLDSLCKEGHVRVVS 217
>gb|EOY31372.1| Pentatricopeptide repeat superfamily protein isoform 1 [Theobroma
cacao] gi|508784118|gb|EOY31374.1| Pentatricopeptide
repeat superfamily protein isoform 1 [Theobroma cacao]
gi|508784120|gb|EOY31376.1| Pentatricopeptide repeat
superfamily protein isoform 1 [Theobroma cacao]
Length = 595
Score = 57.8 bits (138), Expect = 1e-06
Identities = 28/58 (48%), Positives = 39/58 (67%)
Frame = -1
Query: 175 FSSLFRRYARAGMPSAAIRTFYYTRRHPEAVSAEDGASDPFELLIDALCKEGHTKVAA 2
F L RRYARAGMP AIRTF + + E + D ++ FE+++D+LCKEGH +V +
Sbjct: 172 FVILIRRYARAGMPQPAIRTFEFA-KSLEQICNSDEETNLFEIMLDSLCKEGHVRVVS 228
>ref|XP_002308636.1| hypothetical protein POPTR_0006s26360g [Populus trichocarpa]
gi|222854612|gb|EEE92159.1| hypothetical protein
POPTR_0006s26360g [Populus trichocarpa]
Length = 607
Score = 57.8 bits (138), Expect = 1e-06
Identities = 31/57 (54%), Positives = 38/57 (66%)
Frame = -1
Query: 175 FSSLFRRYARAGMPSAAIRTFYYTRRHPEAVSAEDGASDPFELLIDALCKEGHTKVA 5
F+ L RRY RAGM AAIRTF Y ++E G S FE+L+D+LCKEGH +VA
Sbjct: 188 FAILIRRYTRAGMSEAAIRTFEYASSLDLIHNSEAGTS-LFEILLDSLCKEGHVRVA 243
>gb|AFW69320.1| hypothetical protein ZEAMMB73_542469 [Zea mays]
Length = 539
Score = 57.4 bits (137), Expect = 2e-06
Identities = 30/64 (46%), Positives = 37/64 (57%), Gaps = 6/64 (9%)
Frame = -1
Query: 175 FSSLFRRYARAGMPSAAIRTFYYTRRHPEAVSAEDG------ASDPFELLIDALCKEGHT 14
F+ L RRYAR G +A+RTF + +RHP + E A P L IDALCKEGH
Sbjct: 103 FAPLLRRYARIGRTDSAVRTFRFLQRHPGRYAVESDVTPSAEALSPLILTIDALCKEGHP 162
Query: 13 KVAA 2
+ AA
Sbjct: 163 RAAA 166
>ref|XP_003572081.1| PREDICTED: pentatricopeptide repeat-containing protein At5g11310,
mitochondrial-like [Brachypodium distachyon]
Length = 541
Score = 57.4 bits (137), Expect = 2e-06
Identities = 29/64 (45%), Positives = 39/64 (60%), Gaps = 6/64 (9%)
Frame = -1
Query: 175 FSSLFRRYARAGMPSAAIRTFYYTRRHPEAVSAEDG------ASDPFELLIDALCKEGHT 14
F+ L RRYAR G +AA+R F++ RRHP+ S DG A+ + + ALCKEGH
Sbjct: 107 FAPLIRRYARLGRATAALRAFHFLRRHPDRYSVVDGGDCSPAATCLLNMTVGALCKEGHP 166
Query: 13 KVAA 2
+ AA
Sbjct: 167 RPAA 170
>ref|XP_002437530.1| hypothetical protein SORBIDRAFT_10g028820 [Sorghum bicolor]
gi|241915753|gb|EER88897.1| hypothetical protein
SORBIDRAFT_10g028820 [Sorghum bicolor]
Length = 540
Score = 56.6 bits (135), Expect = 3e-06
Identities = 31/66 (46%), Positives = 39/66 (59%), Gaps = 8/66 (12%)
Frame = -1
Query: 175 FSSLFRRYARAGMPSAAIRTFYYTRRHP--EAVSAEDGAS------DPFELLIDALCKEG 20
F+ L RRYAR G +A R F + +RHP AV ++DGA P L +DALCKEG
Sbjct: 102 FAPLLRRYARLGRTDSAARAFRFLQRHPGCYAVESDDGAPAAEAAVSPLILTVDALCKEG 161
Query: 19 HTKVAA 2
H + AA
Sbjct: 162 HPRAAA 167
>ref|XP_004975950.1| PREDICTED: pentatricopeptide repeat-containing protein At5g11310,
mitochondrial-like isoform X1 [Setaria italica]
gi|514802109|ref|XP_004975951.1| PREDICTED:
pentatricopeptide repeat-containing protein At5g11310,
mitochondrial-like isoform X2 [Setaria italica]
gi|514802111|ref|XP_004975952.1| PREDICTED:
pentatricopeptide repeat-containing protein At5g11310,
mitochondrial-like isoform X3 [Setaria italica]
gi|514802113|ref|XP_004975953.1| PREDICTED:
pentatricopeptide repeat-containing protein At5g11310,
mitochondrial-like isoform X4 [Setaria italica]
Length = 546
Score = 55.8 bits (133), Expect = 6e-06
Identities = 30/69 (43%), Positives = 40/69 (57%), Gaps = 11/69 (15%)
Frame = -1
Query: 175 FSSLFRRYARAGMPSAAIRTFYYTRRHPEAV------SAEDGAS-----DPFELLIDALC 29
F+SL RRYAR G +AA+R F + HP+ + +DG+S P L +DALC
Sbjct: 105 FASLLRRYARLGRTAAAVRAFRFLHGHPDRYTVAIDGNGDDGSSSAAEVSPLILAVDALC 164
Query: 28 KEGHTKVAA 2
KEGH + AA
Sbjct: 165 KEGHPRAAA 173
>ref|XP_004136469.1| PREDICTED: pentatricopeptide repeat-containing protein At5g11310,
mitochondrial-like [Cucumis sativus]
gi|449503560|ref|XP_004162063.1| PREDICTED:
pentatricopeptide repeat-containing protein At5g11310,
mitochondrial-like [Cucumis sativus]
Length = 615
Score = 55.8 bits (133), Expect = 6e-06
Identities = 36/86 (41%), Positives = 47/86 (54%), Gaps = 7/86 (8%)
Frame = -1
Query: 238 SRAFDSAWXXXXXXXXXXXXAFSS-------LFRRYARAGMPSAAIRTFYYTRRHPEAVS 80
SR FDSAW +F L RRYARAGM AIRT+ + + E +S
Sbjct: 167 SREFDSAWSLITSRLRGGEESFLVSVEVFVILIRRYARAGMVQPAIRTYEFAC-NLETIS 225
Query: 79 AEDGASDPFELLIDALCKEGHTKVAA 2
G+ FE+L+D+LCKEGH +VA+
Sbjct: 226 GT-GSEGLFEILLDSLCKEGHVRVAS 250
>ref|XP_002516618.1| pentatricopeptide repeat-containing protein, putative [Ricinus
communis] gi|223544438|gb|EEF45959.1| pentatricopeptide
repeat-containing protein, putative [Ricinus communis]
Length = 577
Score = 55.1 bits (131), Expect = 1e-05
Identities = 36/82 (43%), Positives = 45/82 (54%), Gaps = 5/82 (6%)
Frame = -1
Query: 235 RAFDSAWXXXXXXXXXXXXA-FSSLFRRYARAGMPSAAIRTFYYTRRHPEAVSAE---DG 68
+ FDSAW F+ L RRY RAGMP +AIRTF Y A+S + D
Sbjct: 137 KEFDSAWCLVLDRTGLVSSDTFAILIRRYTRAGMPQSAIRTFEY------AISLDFICDY 190
Query: 67 ASDP-FELLIDALCKEGHTKVA 5
D E+L+D+LCKEGH +VA
Sbjct: 191 NCDALLEILLDSLCKEGHVRVA 212