BLASTX nr result
ID: Zingiber23_contig00030489
seq
BLASTX 2.2.25 [Feb-01-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= Zingiber23_contig00030489
(369 letters)
Database: ./nr
37,332,560 sequences; 13,225,080,153 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gb|AEZ00900.1| putative RNA recognition motif-containing protein... 105 6e-21
ref|XP_002317797.1| hypothetical protein POPTR_0012s02630g [Popu... 84 2e-14
ref|XP_006491965.1| PREDICTED: U1 small nuclear ribonucleoprotei... 81 1e-13
ref|XP_006491964.1| PREDICTED: U1 small nuclear ribonucleoprotei... 81 1e-13
ref|XP_006441172.1| hypothetical protein CICLE_v10022008mg [Citr... 81 1e-13
ref|XP_006441170.1| hypothetical protein CICLE_v10022008mg [Citr... 81 1e-13
ref|XP_002275189.2| PREDICTED: uncharacterized protein LOC100265... 80 2e-13
gb|EMT12949.1| hypothetical protein F775_32109 [Aegilops tauschii] 79 5e-13
emb|CBI23047.3| unnamed protein product [Vitis vinifera] 79 5e-13
ref|XP_006374094.1| hypothetical protein POPTR_0015s01130g [Popu... 79 6e-13
dbj|BAJ90751.1| predicted protein [Hordeum vulgare subsp. vulgar... 78 1e-12
dbj|BAJ89959.1| predicted protein [Hordeum vulgare subsp. vulgare] 78 1e-12
gb|AFK40378.1| unknown [Medicago truncatula] 77 2e-12
ref|XP_003602288.1| RNA-binding protein with multiple splicing [... 77 2e-12
ref|XP_003602287.1| RNA-binding protein with multiple splicing [... 77 2e-12
ref|XP_002515833.1| nucleic acid binding protein, putative [Rici... 77 2e-12
gb|ACJ85957.1| unknown [Medicago truncatula] 77 2e-12
ref|XP_004974118.1| PREDICTED: CUGBP Elav-like family member 4-l... 77 2e-12
ref|XP_004974117.1| PREDICTED: CUGBP Elav-like family member 4-l... 77 2e-12
ref|NP_001062425.1| Os08g0547000 [Oryza sativa Japonica Group] g... 77 2e-12
>gb|AEZ00900.1| putative RNA recognition motif-containing protein, partial [Elaeis
guineensis]
Length = 294
Score = 105 bits (262), Expect = 6e-21
Identities = 55/88 (62%), Positives = 61/88 (69%)
Frame = +1
Query: 103 MADAYWRYSEXXXXXXXXXXXXXXXXXLKRPRTEYADIPGGPEMLGYYPREDDRGTHHTI 282
MADAYWRYS+ LKRPR +YADIPGGPE+LGYY R+++R H TI
Sbjct: 35 MADAYWRYSDPRHQAAAMAAPTAP---LKRPRADYADIPGGPEVLGYYSRDEERTGHRTI 91
Query: 283 RDTESIGASYDRYLRNGVSAFPGGEPVR 366
RDTESI ASYDRYLRNGVS F GE VR
Sbjct: 92 RDTESIAASYDRYLRNGVS-FGAGESVR 118
>ref|XP_002317797.1| hypothetical protein POPTR_0012s02630g [Populus trichocarpa]
gi|222858470|gb|EEE96017.1| hypothetical protein
POPTR_0012s02630g [Populus trichocarpa]
Length = 233
Score = 84.0 bits (206), Expect = 2e-14
Identities = 45/90 (50%), Positives = 57/90 (63%), Gaps = 1/90 (1%)
Frame = +1
Query: 103 MADAYWRYSEXXXXXXXXXXXXXXXXXLKRPRTEYADIPGGPEMLGYYPREDDRGTHHTI 282
MAD+YWRY+ KRPR +Y DIP G ++ YY R+DDRG H I
Sbjct: 1 MADSYWRYAGDSRQQPPQSMSSLTG---KRPRIDY-DIPSGRDLSSYYSRDDDRGALHVI 56
Query: 283 RDTESIGASYDRYLRNG-VSAFPGGEPVRA 369
RD++SIGASYDRYLR+G VS++ GG+ RA
Sbjct: 57 RDSDSIGASYDRYLRSGTVSSYGGGQSARA 86
>ref|XP_006491965.1| PREDICTED: U1 small nuclear ribonucleoprotein A-like isoform X3
[Citrus sinensis]
Length = 214
Score = 81.3 bits (199), Expect = 1e-13
Identities = 42/89 (47%), Positives = 55/89 (61%), Gaps = 1/89 (1%)
Frame = +1
Query: 103 MADAYWRYSEXXXXXXXXXXXXXXXXXLKRPRTEYADIPGGPEMLGYYPREDDRGTHHTI 282
MAD YWRYS+ KRPRT+Y D+P G E+ YY R+DDRG +
Sbjct: 1 MADGYWRYSDARQPQSALPSLVS-----KRPRTDY-DVPSGHELSSYYTRDDDRGALRGM 54
Query: 283 RDTESIGASYDRYLRNG-VSAFPGGEPVR 366
RDT+S+GASYDRYLR+ +S++ GG+ R
Sbjct: 55 RDTDSLGASYDRYLRSAQISSYSGGQSAR 83
>ref|XP_006491964.1| PREDICTED: U1 small nuclear ribonucleoprotein A-like isoform X2
[Citrus sinensis]
Length = 231
Score = 81.3 bits (199), Expect = 1e-13
Identities = 42/89 (47%), Positives = 55/89 (61%), Gaps = 1/89 (1%)
Frame = +1
Query: 103 MADAYWRYSEXXXXXXXXXXXXXXXXXLKRPRTEYADIPGGPEMLGYYPREDDRGTHHTI 282
MAD YWRYS+ KRPRT+Y D+P G E+ YY R+DDRG +
Sbjct: 1 MADGYWRYSDARQPQSALPSLVS-----KRPRTDY-DVPSGHELSSYYTRDDDRGALRGM 54
Query: 283 RDTESIGASYDRYLRNG-VSAFPGGEPVR 366
RDT+S+GASYDRYLR+ +S++ GG+ R
Sbjct: 55 RDTDSLGASYDRYLRSAQISSYSGGQSAR 83
>ref|XP_006441172.1| hypothetical protein CICLE_v10022008mg [Citrus clementina]
gi|567897370|ref|XP_006441173.1| hypothetical protein
CICLE_v10022008mg [Citrus clementina]
gi|557543434|gb|ESR54412.1| hypothetical protein
CICLE_v10022008mg [Citrus clementina]
gi|557543435|gb|ESR54413.1| hypothetical protein
CICLE_v10022008mg [Citrus clementina]
Length = 235
Score = 81.3 bits (199), Expect = 1e-13
Identities = 42/89 (47%), Positives = 55/89 (61%), Gaps = 1/89 (1%)
Frame = +1
Query: 103 MADAYWRYSEXXXXXXXXXXXXXXXXXLKRPRTEYADIPGGPEMLGYYPREDDRGTHHTI 282
MAD YWRYS+ KRPRT+Y D+P G E+ YY R+DDRG +
Sbjct: 1 MADGYWRYSDARQPQSALPSLVS-----KRPRTDY-DVPSGHELSSYYTRDDDRGALRGM 54
Query: 283 RDTESIGASYDRYLRNG-VSAFPGGEPVR 366
RDT+S+GASYDRYLR+ +S++ GG+ R
Sbjct: 55 RDTDSLGASYDRYLRSAQISSYSGGQSAR 83
>ref|XP_006441170.1| hypothetical protein CICLE_v10022008mg [Citrus clementina]
gi|567897366|ref|XP_006441171.1| hypothetical protein
CICLE_v10022008mg [Citrus clementina]
gi|568877915|ref|XP_006491963.1| PREDICTED: U1 small
nuclear ribonucleoprotein A-like isoform X1 [Citrus
sinensis] gi|557543432|gb|ESR54410.1| hypothetical
protein CICLE_v10022008mg [Citrus clementina]
gi|557543433|gb|ESR54411.1| hypothetical protein
CICLE_v10022008mg [Citrus clementina]
Length = 232
Score = 81.3 bits (199), Expect = 1e-13
Identities = 42/89 (47%), Positives = 55/89 (61%), Gaps = 1/89 (1%)
Frame = +1
Query: 103 MADAYWRYSEXXXXXXXXXXXXXXXXXLKRPRTEYADIPGGPEMLGYYPREDDRGTHHTI 282
MAD YWRYS+ KRPRT+Y D+P G E+ YY R+DDRG +
Sbjct: 1 MADGYWRYSDARQPQSALPSLVS-----KRPRTDY-DVPSGHELSSYYTRDDDRGALRGM 54
Query: 283 RDTESIGASYDRYLRNG-VSAFPGGEPVR 366
RDT+S+GASYDRYLR+ +S++ GG+ R
Sbjct: 55 RDTDSLGASYDRYLRSAQISSYSGGQSAR 83
>ref|XP_002275189.2| PREDICTED: uncharacterized protein LOC100265772 [Vitis vinifera]
Length = 229
Score = 80.5 bits (197), Expect = 2e-13
Identities = 41/89 (46%), Positives = 55/89 (61%), Gaps = 2/89 (2%)
Frame = +1
Query: 103 MADAYWRYSEXXXXXXXXXXXXXXXXXLKRPRTEYADIPGGPEMLGYYPREDDRGTHHTI 282
MAD YWRY E KRPR++Y D+PGG ++ Y+ RED+R H +I
Sbjct: 1 MADPYWRYGEVRQPPPIPSLSA------KRPRSDY-DVPGGHDLPSYFSREDERAAHRSI 53
Query: 283 RDTESIGASYDRYLRNGVSAFPG--GEPV 363
RD++SIGASYDRYLRN + ++ G G P+
Sbjct: 54 RDSDSIGASYDRYLRNAMPSYGGDSGRPL 82
>gb|EMT12949.1| hypothetical protein F775_32109 [Aegilops tauschii]
Length = 227
Score = 79.3 bits (194), Expect = 5e-13
Identities = 41/88 (46%), Positives = 50/88 (56%)
Frame = +1
Query: 106 ADAYWRYSEXXXXXXXXXXXXXXXXXLKRPRTEYADIPGGPEMLGYYPREDDRGTHHTIR 285
A+ YWR LKR R +Y D PGG EM GYYPRE+ +H++R
Sbjct: 3 AENYWRGGWANQHQQQQQQQQAAAPSLKRARPDYGDGPGGQEMAGYYPREN--AGYHSLR 60
Query: 286 DTESIGASYDRYLRNGVSAFPGGEPVRA 369
D E+IGASYDRYLRNG+ + EP RA
Sbjct: 61 DNEAIGASYDRYLRNGMPSVAANEPSRA 88
>emb|CBI23047.3| unnamed protein product [Vitis vinifera]
Length = 230
Score = 79.3 bits (194), Expect = 5e-13
Identities = 41/88 (46%), Positives = 52/88 (59%)
Frame = +1
Query: 103 MADAYWRYSEXXXXXXXXXXXXXXXXXLKRPRTEYADIPGGPEMLGYYPREDDRGTHHTI 282
MAD YWRY E KRPR++Y D+PGG ++ Y+ RED+R H +I
Sbjct: 1 MADPYWRYGEVRQPPPIPSLSA------KRPRSDY-DVPGGHDLPSYFSREDERAAHRSI 53
Query: 283 RDTESIGASYDRYLRNGVSAFPGGEPVR 366
RD++SIGASYDRYLRN GG+ R
Sbjct: 54 RDSDSIGASYDRYLRNAQMPSYGGDSGR 81
>ref|XP_006374094.1| hypothetical protein POPTR_0015s01130g [Populus trichocarpa]
gi|550321717|gb|ERP51891.1| hypothetical protein
POPTR_0015s01130g [Populus trichocarpa]
Length = 233
Score = 79.0 bits (193), Expect = 6e-13
Identities = 41/90 (45%), Positives = 56/90 (62%), Gaps = 1/90 (1%)
Frame = +1
Query: 103 MADAYWRYSEXXXXXXXXXXXXXXXXXLKRPRTEYADIPGGPEMLGYYPREDDRGTHHTI 282
MAD+YWRY+ KRPR++Y D+P G ++ YY R+DDRG I
Sbjct: 1 MADSYWRYAGDSRQPQPQSMPSLTG---KRPRSDY-DVPSGRDLSSYYSRDDDRGALRVI 56
Query: 283 RDTESIGASYDRYLRNG-VSAFPGGEPVRA 369
RD++SIGASYDRYL +G +S++ GG+ RA
Sbjct: 57 RDSDSIGASYDRYLHSGTISSYGGGQSARA 86
>dbj|BAJ90751.1| predicted protein [Hordeum vulgare subsp. vulgare]
gi|326501246|dbj|BAJ98854.1| predicted protein [Hordeum
vulgare subsp. vulgare]
Length = 283
Score = 77.8 bits (190), Expect = 1e-12
Identities = 37/62 (59%), Positives = 45/62 (72%)
Frame = +1
Query: 184 LKRPRTEYADIPGGPEMLGYYPREDDRGTHHTIRDTESIGASYDRYLRNGVSAFPGGEPV 363
LKR R +Y D PGG EM GYYPRE+ +H++RD E+IGASYDRYLRNG+ + EP
Sbjct: 73 LKRARPDYGDGPGGQEMAGYYPREN--AGYHSLRDNEAIGASYDRYLRNGMPSVAANEPS 130
Query: 364 RA 369
RA
Sbjct: 131 RA 132
>dbj|BAJ89959.1| predicted protein [Hordeum vulgare subsp. vulgare]
Length = 333
Score = 77.8 bits (190), Expect = 1e-12
Identities = 37/62 (59%), Positives = 45/62 (72%)
Frame = +1
Query: 184 LKRPRTEYADIPGGPEMLGYYPREDDRGTHHTIRDTESIGASYDRYLRNGVSAFPGGEPV 363
LKR R +Y D PGG EM GYYPRE+ +H++RD E+IGASYDRYLRNG+ + EP
Sbjct: 73 LKRARPDYGDGPGGQEMAGYYPREN--AGYHSLRDNEAIGASYDRYLRNGMPSVAANEPS 130
Query: 364 RA 369
RA
Sbjct: 131 RA 132
>gb|AFK40378.1| unknown [Medicago truncatula]
Length = 228
Score = 77.4 bits (189), Expect = 2e-12
Identities = 40/88 (45%), Positives = 51/88 (57%)
Frame = +1
Query: 103 MADAYWRYSEXXXXXXXXXXXXXXXXXLKRPRTEYADIPGGPEMLGYYPREDDRGTHHTI 282
M+DAYWRY+E KRPRTEY D+ G + Y+P +DDRG I
Sbjct: 1 MSDAYWRYAESQQHAPPTIPG-------KRPRTEY-DVSGVHNLANYFPHDDDRGRLQVI 52
Query: 283 RDTESIGASYDRYLRNGVSAFPGGEPVR 366
RDTES+ ASY+RYLRN +S+ G+ R
Sbjct: 53 RDTESLDASYERYLRNAISSHGSGQSTR 80
>ref|XP_003602288.1| RNA-binding protein with multiple splicing [Medicago truncatula]
gi|355491336|gb|AES72539.1| RNA-binding protein with
multiple splicing [Medicago truncatula]
Length = 243
Score = 77.4 bits (189), Expect = 2e-12
Identities = 40/88 (45%), Positives = 51/88 (57%)
Frame = +1
Query: 103 MADAYWRYSEXXXXXXXXXXXXXXXXXLKRPRTEYADIPGGPEMLGYYPREDDRGTHHTI 282
M+DAYWRY+E KRPRTEY D+ G + Y+P +DDRG I
Sbjct: 1 MSDAYWRYAESQQHAPPTIPG-------KRPRTEY-DVSGVHNLANYFPHDDDRGRLQVI 52
Query: 283 RDTESIGASYDRYLRNGVSAFPGGEPVR 366
RDTES+ ASY+RYLRN +S+ G+ R
Sbjct: 53 RDTESLDASYERYLRNAISSHGSGQSTR 80
>ref|XP_003602287.1| RNA-binding protein with multiple splicing [Medicago truncatula]
gi|355491335|gb|AES72538.1| RNA-binding protein with
multiple splicing [Medicago truncatula]
Length = 258
Score = 77.4 bits (189), Expect = 2e-12
Identities = 40/88 (45%), Positives = 51/88 (57%)
Frame = +1
Query: 103 MADAYWRYSEXXXXXXXXXXXXXXXXXLKRPRTEYADIPGGPEMLGYYPREDDRGTHHTI 282
M+DAYWRY+E KRPRTEY D+ G + Y+P +DDRG I
Sbjct: 1 MSDAYWRYAESQQHAPPTIPG-------KRPRTEY-DVSGVHNLANYFPHDDDRGRLQVI 52
Query: 283 RDTESIGASYDRYLRNGVSAFPGGEPVR 366
RDTES+ ASY+RYLRN +S+ G+ R
Sbjct: 53 RDTESLDASYERYLRNAISSHGSGQSTR 80
>ref|XP_002515833.1| nucleic acid binding protein, putative [Ricinus communis]
gi|223545062|gb|EEF46575.1| nucleic acid binding
protein, putative [Ricinus communis]
Length = 232
Score = 77.4 bits (189), Expect = 2e-12
Identities = 42/89 (47%), Positives = 54/89 (60%), Gaps = 1/89 (1%)
Frame = +1
Query: 103 MADAYWRYSEXXXXXXXXXXXXXXXXXLKRPRTEYADIPGGPEMLGYYPREDDRGTHHTI 282
MADAYWRYS+ KR R++Y D+ G E+ YY R+DDRG I
Sbjct: 1 MADAYWRYSDARQPQQQPIPTLVG----KRSRSDY-DVTSGHELPNYYTRDDDRGALRAI 55
Query: 283 RDTESIGASYDRYLRNG-VSAFPGGEPVR 366
RDT+SIGASYDRYLR+ +S++ GG+ R
Sbjct: 56 RDTDSIGASYDRYLRSAPISSYSGGQSAR 84
>gb|ACJ85957.1| unknown [Medicago truncatula]
Length = 107
Score = 77.4 bits (189), Expect = 2e-12
Identities = 40/88 (45%), Positives = 51/88 (57%)
Frame = +1
Query: 103 MADAYWRYSEXXXXXXXXXXXXXXXXXLKRPRTEYADIPGGPEMLGYYPREDDRGTHHTI 282
M+DAYWRY+E KRPRTEY D+ G + Y+P +DDRG I
Sbjct: 1 MSDAYWRYAEPQQHAPPTIPG-------KRPRTEY-DVSGVHNLANYFPHDDDRGRLQVI 52
Query: 283 RDTESIGASYDRYLRNGVSAFPGGEPVR 366
RDTES+ ASY+RYLRN +S+ G+ R
Sbjct: 53 RDTESLDASYERYLRNAISSHGSGQSTR 80
>ref|XP_004974118.1| PREDICTED: CUGBP Elav-like family member 4-like isoform X2 [Setaria
italica]
Length = 285
Score = 77.0 bits (188), Expect = 2e-12
Identities = 33/62 (53%), Positives = 45/62 (72%)
Frame = +1
Query: 184 LKRPRTEYADIPGGPEMLGYYPREDDRGTHHTIRDTESIGASYDRYLRNGVSAFPGGEPV 363
LKR R ++ D+ GG +M GYYPRE DR +H++R+ E+IGASYDRYLRNG+ + +
Sbjct: 65 LKRARPDFGDVSGGQDMTGYYPRETDRAGYHSLRENEAIGASYDRYLRNGMPSVGANDTS 124
Query: 364 RA 369
RA
Sbjct: 125 RA 126
>ref|XP_004974117.1| PREDICTED: CUGBP Elav-like family member 4-like isoform X1 [Setaria
italica]
Length = 326
Score = 77.0 bits (188), Expect = 2e-12
Identities = 33/62 (53%), Positives = 45/62 (72%)
Frame = +1
Query: 184 LKRPRTEYADIPGGPEMLGYYPREDDRGTHHTIRDTESIGASYDRYLRNGVSAFPGGEPV 363
LKR R ++ D+ GG +M GYYPRE DR +H++R+ E+IGASYDRYLRNG+ + +
Sbjct: 65 LKRARPDFGDVSGGQDMTGYYPRETDRAGYHSLRENEAIGASYDRYLRNGMPSVGANDTS 124
Query: 364 RA 369
RA
Sbjct: 125 RA 126
>ref|NP_001062425.1| Os08g0547000 [Oryza sativa Japonica Group]
gi|42408101|dbj|BAD09242.1| putative RNA-binding protein
[Oryza sativa Japonica Group]
gi|42408712|dbj|BAD09930.1| putative RNA-binding protein
[Oryza sativa Japonica Group]
gi|113624394|dbj|BAF24339.1| Os08g0547000 [Oryza sativa
Japonica Group] gi|215767903|dbj|BAH00132.1| unnamed
protein product [Oryza sativa Japonica Group]
Length = 294
Score = 77.0 bits (188), Expect = 2e-12
Identities = 34/61 (55%), Positives = 43/61 (70%)
Frame = +1
Query: 184 LKRPRTEYADIPGGPEMLGYYPREDDRGTHHTIRDTESIGASYDRYLRNGVSAFPGGEPV 363
LKR R +Y D+P G +M GYYPRE DR +H +R+ E+IGASYDRYLRNG+ + E
Sbjct: 61 LKRARPDYGDVPAGQDMTGYYPRETDRTGYHALRENEAIGASYDRYLRNGMPSVAATETN 120
Query: 364 R 366
R
Sbjct: 121 R 121