BLASTX nr result
ID: Zingiber23_contig00028153
seq
BLASTX 2.2.25 [Feb-01-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= Zingiber23_contig00028153
(631 letters)
Database: ./nr
37,332,560 sequences; 13,225,080,153 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gb|AAO16994.1| Hypothetical protein [Oryza sativa Japonica Group... 78 2e-12
gb|EEC75008.1| hypothetical protein OsI_11079 [Oryza sativa Indi... 78 2e-12
ref|NP_001049774.1| Os03g0286500 [Oryza sativa Japonica Group] g... 78 2e-12
ref|XP_004984828.1| PREDICTED: RNA-binding protein 38-like isofo... 76 9e-12
ref|XP_003561742.1| PREDICTED: uncharacterized protein LOC100843... 73 6e-11
gb|ACF82948.1| unknown [Zea mays] gi|414866250|tpg|DAA44807.1| T... 73 8e-11
ref|XP_004984827.1| PREDICTED: RNA-binding protein 38-like isofo... 71 2e-10
ref|XP_002468050.1| hypothetical protein SORBIDRAFT_01g038700 [S... 69 1e-09
ref|NP_001136575.1| hypothetical protein [Zea mays] gi|194696232... 65 2e-08
gb|EMT07415.1| hypothetical protein F775_22343 [Aegilops tauschii] 62 1e-07
ref|XP_002312040.1| RNA recognition motif-containing family prot... 58 2e-06
>gb|AAO16994.1| Hypothetical protein [Oryza sativa Japonica Group]
gi|125585859|gb|EAZ26523.1| hypothetical protein
OsJ_10418 [Oryza sativa Japonica Group]
Length = 339
Score = 78.2 bits (191), Expect = 2e-12
Identities = 51/146 (34%), Positives = 59/146 (40%), Gaps = 32/146 (21%)
Frame = +1
Query: 1 LRPEPPST---RVPLSAHSQHHQPPPDMAMGPRGVSSAPPPPTGAAQWYYRVXXXXXXXX 171
LRP PP+T P HHQP P +A+G RGVS P WYY
Sbjct: 151 LRPSPPATPGPHAPALPSPHHHQPAPAIAVGSRGVSPVP--------WYYHPSTTPPPPP 202
Query: 172 XXXXFQLHH------YHNALPFYPTA-GYRYSPRCITDFSYNGRMGHT------------ 294
H YH LPFYP A Y YSP + D SYN ++G
Sbjct: 203 PPAAHYAAHGGHHQQYHGVLPFYPAATTYGYSPNYVADLSYNAKLGQAAAAHGTNGAYLQ 262
Query: 295 ----------GGLVAAAGTMPVYPLY 342
GG++AA G MPVYP Y
Sbjct: 263 GHFSYPAAAQGGMLAANGMMPVYPYY 288
>gb|EEC75008.1| hypothetical protein OsI_11079 [Oryza sativa Indica Group]
Length = 454
Score = 78.2 bits (191), Expect = 2e-12
Identities = 51/146 (34%), Positives = 59/146 (40%), Gaps = 32/146 (21%)
Frame = +1
Query: 1 LRPEPPST---RVPLSAHSQHHQPPPDMAMGPRGVSSAPPPPTGAAQWYYRVXXXXXXXX 171
LRP PP+T P HHQP P +A+G RGVS P WYY
Sbjct: 151 LRPSPPATPGPHAPALPSPHHHQPAPAIAVGSRGVSPVP--------WYYHPSTTPPPPP 202
Query: 172 XXXXFQLHH------YHNALPFYPTA-GYRYSPRCITDFSYNGRMGHT------------ 294
H YH LPFYP A Y YSP + D SYN ++G
Sbjct: 203 PPAAHYAAHGGHHQQYHGVLPFYPAATTYGYSPNYVADLSYNAKLGQAAAAHGTNGAYLQ 262
Query: 295 ----------GGLVAAAGTMPVYPLY 342
GG++AA G MPVYP Y
Sbjct: 263 GHFSYPAAAQGGMLAANGMMPVYPYY 288
>ref|NP_001049774.1| Os03g0286500 [Oryza sativa Japonica Group]
gi|108707565|gb|ABF95360.1| RNA recognition motif family
protein, expressed [Oryza sativa Japonica Group]
gi|113548245|dbj|BAF11688.1| Os03g0286500 [Oryza sativa
Japonica Group]
Length = 310
Score = 78.2 bits (191), Expect = 2e-12
Identities = 51/146 (34%), Positives = 59/146 (40%), Gaps = 32/146 (21%)
Frame = +1
Query: 1 LRPEPPST---RVPLSAHSQHHQPPPDMAMGPRGVSSAPPPPTGAAQWYYRVXXXXXXXX 171
LRP PP+T P HHQP P +A+G RGVS P WYY
Sbjct: 122 LRPSPPATPGPHAPALPSPHHHQPAPAIAVGSRGVSPVP--------WYYHPSTTPPPPP 173
Query: 172 XXXXFQLHH------YHNALPFYPTA-GYRYSPRCITDFSYNGRMGHT------------ 294
H YH LPFYP A Y YSP + D SYN ++G
Sbjct: 174 PPAAHYAAHGGHHQQYHGVLPFYPAATTYGYSPNYVADLSYNAKLGQAAAAHGTNGAYLQ 233
Query: 295 ----------GGLVAAAGTMPVYPLY 342
GG++AA G MPVYP Y
Sbjct: 234 GHFSYPAAAQGGMLAANGMMPVYPYY 259
>ref|XP_004984828.1| PREDICTED: RNA-binding protein 38-like isoform X2 [Setaria italica]
Length = 303
Score = 75.9 bits (185), Expect = 9e-12
Identities = 51/143 (35%), Positives = 59/143 (41%), Gaps = 29/143 (20%)
Frame = +1
Query: 1 LRPEPPSTRVPLS-AHSQHHQPPPDMAMGPRGVSSAPPPPTGAAQWYYRVXXXXXXXXXX 177
LRP PP+T P + A HQP P +A+G RGVS P WYY
Sbjct: 117 LRPSPPATPAPHAPALPSPHQPAPAIAVGSRGVSPVP--------WYYHPSTTPPPPPPP 168
Query: 178 XXFQLHH-----YHNALPFYPTAG-YRYSPRCITDFSYNGRMGHT--------------- 294
H YH LPFYP A Y YSP + D SYN ++G
Sbjct: 169 PAAHYAHGAHQQYHGVLPFYPAATTYGYSPNYVADLSYNAKLGQAAAAAAGTAGSYMQGH 228
Query: 295 -------GGLVAAAGTMPVYPLY 342
GG+VA G MPVYP Y
Sbjct: 229 FTYPAAQGGMVAPNGMMPVYPFY 251
>ref|XP_003561742.1| PREDICTED: uncharacterized protein LOC100843530 [Brachypodium
distachyon]
Length = 307
Score = 73.2 bits (178), Expect = 6e-11
Identities = 50/156 (32%), Positives = 59/156 (37%), Gaps = 42/156 (26%)
Frame = +1
Query: 1 LRPEPPST------RVPLSAHSQHHQPPPDMAMGPRGVSSAP-----------PPPTGAA 129
LRP PP+T P H H QP P + G RG+S P PPP A
Sbjct: 111 LRPSPPATPAPHMPAAPHHGHHHHQQPAPAIVAGSRGMSPVPWYYHPSTTPPPPPPPPQA 170
Query: 130 QWYYRVXXXXXXXXXXXXFQLHHYHNALPFYPTA-GYRYSPRCITDFSYNGRMGHT---- 294
+Y H YH LPFYP A Y YSP + D SYN ++G T
Sbjct: 171 PAHY----------GHGAHPQHQYHGVLPFYPAATNYGYSPNYVADLSYNAKLGQTAAAP 220
Query: 295 --------------------GGLVAAAGTMPVYPLY 342
GG++A MPVYP Y
Sbjct: 221 GAAGSYMQGHFPYPAAAAAQGGMLAPNAMMPVYPYY 256
>gb|ACF82948.1| unknown [Zea mays] gi|414866250|tpg|DAA44807.1| TPA: hypothetical
protein ZEAMMB73_243908 [Zea mays]
Length = 297
Score = 72.8 bits (177), Expect = 8e-11
Identities = 51/144 (35%), Positives = 61/144 (42%), Gaps = 30/144 (20%)
Frame = +1
Query: 1 LRPEPPSTRVPLS-AHSQHHQPPPDMAMGPRGVSSAPPPPTGAAQWYYRVXXXXXXXXXX 177
LRP PP+T P + A HQP P +A+G RGVS P WYY
Sbjct: 114 LRPSPPATPAPHAPALPSQHQPTPAIAVGSRGVSPVP--------WYYHPSTTPPPPAAH 165
Query: 178 XXFQLHH--YHNALPFYPTAG--YRYSPRCITDFSYNGRMGHT----------------- 294
H YH LPFYP A Y Y+P + D SYN ++G
Sbjct: 166 HYAHGAHQQYHGVLPFYPAAAATYGYAPNYVADLSYNAKVGQAAAGGTGGSYLQGHFAYP 225
Query: 295 ------GGLVAAA--GTMPVYPLY 342
GG+VAAA G +PVYP Y
Sbjct: 226 AAAAAQGGMVAAAPNGMVPVYPFY 249
>ref|XP_004984827.1| PREDICTED: RNA-binding protein 38-like isoform X1 [Setaria italica]
Length = 304
Score = 71.2 bits (173), Expect = 2e-10
Identities = 51/144 (35%), Positives = 59/144 (40%), Gaps = 30/144 (20%)
Frame = +1
Query: 1 LRPEPPSTRVPLS-AHSQHHQPPPD-MAMGPRGVSSAPPPPTGAAQWYYRVXXXXXXXXX 174
LRP PP+T P + A HQP P +A+G RGVS P WYY
Sbjct: 117 LRPSPPATPAPHAPALPSPHQPAPAAIAVGSRGVSPVP--------WYYHPSTTPPPPPP 168
Query: 175 XXXFQLHH-----YHNALPFYPTAG-YRYSPRCITDFSYNGRMGHT-------------- 294
H YH LPFYP A Y YSP + D SYN ++G
Sbjct: 169 PPAAHYAHGAHQQYHGVLPFYPAATTYGYSPNYVADLSYNAKLGQAAAAAAGTAGSYMQG 228
Query: 295 --------GGLVAAAGTMPVYPLY 342
GG+VA G MPVYP Y
Sbjct: 229 HFTYPAAQGGMVAPNGMMPVYPFY 252
>ref|XP_002468050.1| hypothetical protein SORBIDRAFT_01g038700 [Sorghum bicolor]
gi|241921904|gb|EER95048.1| hypothetical protein
SORBIDRAFT_01g038700 [Sorghum bicolor]
Length = 310
Score = 68.6 bits (166), Expect = 1e-09
Identities = 50/144 (34%), Positives = 58/144 (40%), Gaps = 32/144 (22%)
Frame = +1
Query: 7 PEPPSTRVPLSAHS--QHHQPPPDMAMGPRGVSSAPPPPTGAAQWYYRVXXXXXXXXXXX 180
P PP+T P AH+ HQP P +A+G RGVS P WYY
Sbjct: 123 PSPPATPAP-HAHALPSPHQPTPAIAVGSRGVSPVP--------WYYHPSTTPPPPPPPA 173
Query: 181 XFQLH----HYHNALPFYPTA-GYRYSPRCITDFSYNGRMGHT----------------- 294
H YH LPFYP A Y YSP + D SYN ++G
Sbjct: 174 AHYAHGAHQQYHGVLPFYPAATTYGYSPNYVADLSYNAKLGQAAAGGTAGSYLQPQGHFA 233
Query: 295 ------GGLVAAA--GTMPVYPLY 342
GG+ AA G MPVYP Y
Sbjct: 234 YPAAAQGGMHVAAPNGMMPVYPFY 257
>ref|NP_001136575.1| hypothetical protein [Zea mays] gi|194696232|gb|ACF82200.1| unknown
[Zea mays] gi|413956076|gb|AFW88725.1| hypothetical
protein ZEAMMB73_158124 [Zea mays]
Length = 279
Score = 65.1 bits (157), Expect = 2e-08
Identities = 46/134 (34%), Positives = 53/134 (39%), Gaps = 20/134 (14%)
Frame = +1
Query: 1 LRPEPPSTRVPLSAHSQHHQPPPDMAMGPRGVSSAPPPPTGAAQWYYRVXXXXXXXXXXX 180
LRP PP A HQP P +A+G R VS P WYY
Sbjct: 115 LRPSPPHAH----ALPSPHQPTPAIAVGSRSVSPVP--------WYYHPSTTRPPPPPAA 162
Query: 181 XFQLHHYHNALPFYPTAG-YRYSPRCITDFSYNGRMGHTGGLVAAAGT------------ 321
Q YH LPFYP A Y YSP +TD SYN ++G AAG+
Sbjct: 163 HQQ---YHGVLPFYPAAATYGYSPNYVTDLSYNTKVGQAAAAGTAAGSYLQLQGHLAYQA 219
Query: 322 -------MPVYPLY 342
+PVYP Y
Sbjct: 220 APAQGGMVPVYPFY 233
>gb|EMT07415.1| hypothetical protein F775_22343 [Aegilops tauschii]
Length = 229
Score = 62.0 bits (149), Expect = 1e-07
Identities = 50/153 (32%), Positives = 58/153 (37%), Gaps = 39/153 (25%)
Frame = +1
Query: 1 LRPEPPSTRVPLSAHSQHHQP--PPDMAMGPRGVS---------SAPPPPTGAAQWYYRV 147
LRP PP+T P HH P P RGVS + PPPP AA + +
Sbjct: 47 LRPSPPTTPAP------HHMPALPSPHHQRARGVSPVPWYYHPSTTPPPPPQAAHYGHGA 100
Query: 148 XXXXXXXXXXXXFQLHHYHNALPFYPTAG-YRYSPRCITDFSYNGR-------------- 282
YH LPFYP A Y YSP +TD SYN +
Sbjct: 101 H--------------QQYHGVLPFYPAAANYGYSPNYVTDLSYNAQKLGQAAATAPGAGG 146
Query: 283 -----MGH--------TGGLVAAAGTMPVYPLY 342
GH GG++A G MPVYP Y
Sbjct: 147 SYMQPQGHFSYPAAAAHGGMLAPNGMMPVYPYY 179
>ref|XP_002312040.1| RNA recognition motif-containing family protein [Populus
trichocarpa] gi|222851860|gb|EEE89407.1| RNA recognition
motif-containing family protein [Populus trichocarpa]
Length = 251
Score = 58.2 bits (139), Expect = 2e-06
Identities = 42/122 (34%), Positives = 52/122 (42%), Gaps = 16/122 (13%)
Frame = +1
Query: 25 RVPLSAHSQHHQPPPDMAMGPRGVSSAPPPPTGAAQWYYRVXXXXXXXXXXXXFQLHHYH 204
R P S+ Q P++ GPR S P PP QWYY H +H
Sbjct: 96 RRPRSSTPAPPQQGPNIIAGPR---STPAPPANHVQWYYPAGSAAASPFH------HQHH 146
Query: 205 NALPFYPTAGYRYSPRCI-TDFSYNGRMGHTGG---------------LVAAAGTMPVYP 336
A+PF Y YSP I TD SYN ++ +TGG +V A MP+YP
Sbjct: 147 QAVPF-----YGYSPAYIATDISYNHKLSYTGGSYMNGHFSQVYPGQAMVGANTLMPMYP 201
Query: 337 LY 342
LY
Sbjct: 202 LY 203