BLASTX nr result
ID: Zingiber23_contig00024912
seq
BLASTX 2.2.25 [Feb-01-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= Zingiber23_contig00024912
(395 letters)
Database: ./nr
37,332,560 sequences; 13,225,080,153 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
ref|XP_006650916.1| PREDICTED: cleavage and polyadenylation spec... 121 1e-25
ref|XP_003560694.1| PREDICTED: cleavage and polyadenylation spec... 121 1e-25
gb|EMT17383.1| Cleavage and polyadenylation specificity factor s... 120 1e-25
ref|XP_003559115.1| PREDICTED: cleavage and polyadenylation spec... 120 2e-25
ref|NP_001146407.1| uncharacterized protein LOC100279987 [Zea ma... 119 4e-25
gb|EAY92623.1| hypothetical protein OsI_14368 [Oryza sativa Indi... 118 9e-25
dbj|BAJ99273.1| predicted protein [Hordeum vulgare subsp. vulgare] 117 1e-24
ref|XP_004981011.1| PREDICTED: cleavage and polyadenylation spec... 117 2e-24
ref|XP_002463500.1| hypothetical protein SORBIDRAFT_01g000850 [S... 117 2e-24
ref|NP_001051928.1| Os03g0852900 [Oryza sativa Japonica Group] g... 116 3e-24
gb|EMS66185.1| Cleavage and polyadenylation specificity factor s... 114 1e-23
ref|XP_002323824.2| cleavage and polyadenylation specificity fac... 114 1e-23
dbj|BAJ86772.1| predicted protein [Hordeum vulgare subsp. vulgare] 114 1e-23
dbj|BAJ85804.1| predicted protein [Hordeum vulgare subsp. vulgare] 114 1e-23
dbj|BAJ89790.1| predicted protein [Hordeum vulgare subsp. vulgare] 114 1e-23
ref|XP_006300311.1| hypothetical protein CARUB_v10019868mg [Caps... 113 2e-23
ref|XP_004135522.1| PREDICTED: LOW QUALITY PROTEIN: cleavage and... 113 2e-23
ref|NP_176297.1| cleavage and polyadenylation specificity factor... 113 2e-23
ref|XP_002886569.1| hypothetical protein ARALYDRAFT_475225 [Arab... 113 2e-23
gb|EOX98110.1| Cleavage and polyadenylation specificity factor 7... 113 3e-23
>ref|XP_006650916.1| PREDICTED: cleavage and polyadenylation specificity factor subunit
3-I-like [Oryza brachyantha]
Length = 632
Score = 121 bits (303), Expect = 1e-25
Identities = 57/85 (67%), Positives = 74/85 (87%)
Frame = +1
Query: 7 VAEVEKTQEETEKMAHKVIYSLLVSLFGDVKVGEEGKLIVTVDGNVARLDRKNGEVECDD 186
V E KTQEETE++A KV+Y+L+VSLFGDVKV EEGKL+++VDG VA LD ++G+VEC++
Sbjct: 547 VEEAVKTQEETERVAQKVVYALMVSLFGDVKVAEEGKLVISVDGQVAHLDGRSGDVECEN 606
Query: 187 DSLKERVKIAFQRIQSAVRPIPLSA 261
SLKER+K AF+RIQ AVRPIPL++
Sbjct: 607 ASLKERIKTAFRRIQGAVRPIPLAS 631
>ref|XP_003560694.1| PREDICTED: cleavage and polyadenylation specificity factor subunit
3-I-like [Brachypodium distachyon]
Length = 690
Score = 121 bits (303), Expect = 1e-25
Identities = 57/85 (67%), Positives = 74/85 (87%)
Frame = +1
Query: 7 VAEVEKTQEETEKMAHKVIYSLLVSLFGDVKVGEEGKLIVTVDGNVARLDRKNGEVECDD 186
V E EKTQ+ETEK+A KV+Y+L+VSLF DVKV EEGKL+++VDG+VA LD +G+VEC++
Sbjct: 605 VEEAEKTQDETEKVARKVVYALMVSLFADVKVAEEGKLVISVDGDVAHLDGSSGDVECEN 664
Query: 187 DSLKERVKIAFQRIQSAVRPIPLSA 261
+LKER+K AF+RIQ AVRPIPLS+
Sbjct: 665 AALKERIKTAFRRIQGAVRPIPLSS 689
>gb|EMT17383.1| Cleavage and polyadenylation specificity factor subunit 3 [Aegilops
tauschii]
Length = 720
Score = 120 bits (302), Expect = 1e-25
Identities = 58/85 (68%), Positives = 73/85 (85%)
Frame = +1
Query: 7 VAEVEKTQEETEKMAHKVIYSLLVSLFGDVKVGEEGKLIVTVDGNVARLDRKNGEVECDD 186
+ E KT+EETEK+A KV+YSL+VSLFGDVKV EEGKL++TVDG+VA LD ++G+VE ++
Sbjct: 635 IEEAVKTEEETEKVARKVVYSLMVSLFGDVKVAEEGKLVITVDGDVAHLDGRSGDVESEN 694
Query: 187 DSLKERVKIAFQRIQSAVRPIPLSA 261
LKER+K AF+RIQ AVRPIPLSA
Sbjct: 695 AGLKERIKTAFRRIQGAVRPIPLSA 719
>ref|XP_003559115.1| PREDICTED: cleavage and polyadenylation specificity factor subunit
3-I-like [Brachypodium distachyon]
Length = 768
Score = 120 bits (301), Expect = 2e-25
Identities = 57/85 (67%), Positives = 73/85 (85%)
Frame = +1
Query: 7 VAEVEKTQEETEKMAHKVIYSLLVSLFGDVKVGEEGKLIVTVDGNVARLDRKNGEVECDD 186
V E EKTQEETEK+A KV+Y+L+VSLFGDVKV E GK +++VDG+VA LD +G+VEC++
Sbjct: 683 VEEAEKTQEETEKVARKVVYALMVSLFGDVKVAEGGKFVISVDGDVAHLDGSSGDVECEN 742
Query: 187 DSLKERVKIAFQRIQSAVRPIPLSA 261
+LKER+K AF+RIQ AVRPIPLS+
Sbjct: 743 AALKERIKTAFRRIQGAVRPIPLSS 767
>ref|NP_001146407.1| uncharacterized protein LOC100279987 [Zea mays]
gi|219887045|gb|ACL53897.1| unknown [Zea mays]
gi|414873991|tpg|DAA52548.1| TPA: hypothetical protein
ZEAMMB73_264007 [Zea mays]
Length = 697
Score = 119 bits (298), Expect = 4e-25
Identities = 57/85 (67%), Positives = 72/85 (84%)
Frame = +1
Query: 7 VAEVEKTQEETEKMAHKVIYSLLVSLFGDVKVGEEGKLIVTVDGNVARLDRKNGEVECDD 186
V E KT+EETEK A KV+Y+L+ SLFGDVKV EEGK +++VDGNVA LD ++G+VEC++
Sbjct: 612 VEEAVKTKEETEKAALKVVYALMTSLFGDVKVAEEGKFVISVDGNVAHLDGRSGDVECEN 671
Query: 187 DSLKERVKIAFQRIQSAVRPIPLSA 261
+LKER+K AF+RIQ AVRPIPLSA
Sbjct: 672 ATLKERIKTAFRRIQGAVRPIPLSA 696
>gb|EAY92623.1| hypothetical protein OsI_14368 [Oryza sativa Indica Group]
Length = 700
Score = 118 bits (295), Expect = 9e-25
Identities = 55/83 (66%), Positives = 72/83 (86%)
Frame = +1
Query: 7 VAEVEKTQEETEKMAHKVIYSLLVSLFGDVKVGEEGKLIVTVDGNVARLDRKNGEVECDD 186
V E KTQEETE++A KV+Y+L+VSLFGDVKV EEGKL+++VDG VA LD ++G+VEC++
Sbjct: 615 VEEAVKTQEETERVAQKVVYALMVSLFGDVKVAEEGKLVISVDGQVAHLDGRSGDVECEN 674
Query: 187 DSLKERVKIAFQRIQSAVRPIPL 255
+L+ER+K AF+RIQ AVRPIPL
Sbjct: 675 ATLRERIKTAFRRIQGAVRPIPL 697
>dbj|BAJ99273.1| predicted protein [Hordeum vulgare subsp. vulgare]
Length = 693
Score = 117 bits (294), Expect = 1e-24
Identities = 54/85 (63%), Positives = 73/85 (85%)
Frame = +1
Query: 7 VAEVEKTQEETEKMAHKVIYSLLVSLFGDVKVGEEGKLIVTVDGNVARLDRKNGEVECDD 186
+ E KT+EETEK+A KV+Y+L+ SLFGDVKV EEG+L+++VDG+VA LD ++G+VEC++
Sbjct: 608 IEEAAKTEEETEKVAQKVVYALMASLFGDVKVAEEGELVISVDGDVAHLDGRSGDVECEN 667
Query: 187 DSLKERVKIAFQRIQSAVRPIPLSA 261
+LKER+ AF+RIQ AVRPIPLSA
Sbjct: 668 AALKERISTAFRRIQGAVRPIPLSA 692
>ref|XP_004981011.1| PREDICTED: cleavage and polyadenylation specificity factor subunit
3-I-like [Setaria italica]
Length = 695
Score = 117 bits (292), Expect = 2e-24
Identities = 55/85 (64%), Positives = 73/85 (85%)
Frame = +1
Query: 7 VAEVEKTQEETEKMAHKVIYSLLVSLFGDVKVGEEGKLIVTVDGNVARLDRKNGEVECDD 186
V E KT+E+TE++A KV+YSL+ SLFGDVKVG+EGK +++VDG+VA LD ++G+VEC +
Sbjct: 610 VEEAAKTKEDTERVALKVVYSLMASLFGDVKVGDEGKFVISVDGDVAHLDGRSGDVECVN 669
Query: 187 DSLKERVKIAFQRIQSAVRPIPLSA 261
+LKER+K AF+RIQ AVRPIPLSA
Sbjct: 670 GTLKERIKTAFRRIQGAVRPIPLSA 694
>ref|XP_002463500.1| hypothetical protein SORBIDRAFT_01g000850 [Sorghum bicolor]
gi|241917354|gb|EER90498.1| hypothetical protein
SORBIDRAFT_01g000850 [Sorghum bicolor]
Length = 695
Score = 117 bits (292), Expect = 2e-24
Identities = 56/85 (65%), Positives = 72/85 (84%)
Frame = +1
Query: 7 VAEVEKTQEETEKMAHKVIYSLLVSLFGDVKVGEEGKLIVTVDGNVARLDRKNGEVECDD 186
V E KT+EETEK+A KV+Y+L+ SLFGDVKV EGK +++VDGNVA LD +G+V+C++
Sbjct: 610 VEEAVKTKEETEKVAQKVVYALMTSLFGDVKVTAEGKFVISVDGNVAHLDGMSGDVKCEN 669
Query: 187 DSLKERVKIAFQRIQSAVRPIPLSA 261
+LKER+K AF+RIQSAVRPIPLSA
Sbjct: 670 ATLKERIKTAFRRIQSAVRPIPLSA 694
>ref|NP_001051928.1| Os03g0852900 [Oryza sativa Japonica Group]
gi|27573349|gb|AAO20067.1| putative cleavage and
polyadenylation specifity factor protein [Oryza sativa
Japonica Group] gi|29126360|gb|AAO66552.1| putative
cleavage and polyadenylation specifity factor [Oryza
sativa Japonica Group] gi|108712151|gb|ABF99946.1|
Cleavage and polyadenylation specificity factor, 73 kDa
subunit, putative, expressed [Oryza sativa Japonica
Group] gi|113550399|dbj|BAF13842.1| Os03g0852900 [Oryza
sativa Japonica Group] gi|125588676|gb|EAZ29340.1|
hypothetical protein OsJ_13407 [Oryza sativa Japonica
Group]
Length = 700
Score = 116 bits (291), Expect = 3e-24
Identities = 55/83 (66%), Positives = 71/83 (85%)
Frame = +1
Query: 7 VAEVEKTQEETEKMAHKVIYSLLVSLFGDVKVGEEGKLIVTVDGNVARLDRKNGEVECDD 186
V E KTQEETE++A KV+Y+L+VSLFGDVKV EEGKL+++VDG VA LD ++G VEC++
Sbjct: 615 VEEAVKTQEETERVAQKVVYALMVSLFGDVKVAEEGKLVISVDGQVAHLDGRSGGVECEN 674
Query: 187 DSLKERVKIAFQRIQSAVRPIPL 255
+L+ER+K AF+RIQ AVRPIPL
Sbjct: 675 ATLRERIKTAFRRIQGAVRPIPL 697
>gb|EMS66185.1| Cleavage and polyadenylation specificity factor subunit 3-I [Triticum
urartu]
Length = 875
Score = 114 bits (286), Expect = 1e-23
Identities = 53/80 (66%), Positives = 70/80 (87%)
Frame = +1
Query: 22 KTQEETEKMAHKVIYSLLVSLFGDVKVGEEGKLIVTVDGNVARLDRKNGEVECDDDSLKE 201
KT+EE EK+ KV+Y+L+VSLFGDVKV EEGKL+++VDG+VA LD ++G+VEC++ +LKE
Sbjct: 795 KTEEEMEKVVQKVVYALMVSLFGDVKVAEEGKLVISVDGDVAHLDGRSGDVECENAALKE 854
Query: 202 RVKIAFQRIQSAVRPIPLSA 261
R+ AF+RIQ AVRPIPLSA
Sbjct: 855 RISTAFRRIQGAVRPIPLSA 874
Score = 100 bits (248), Expect = 3e-19
Identities = 45/73 (61%), Positives = 63/73 (86%)
Frame = +1
Query: 22 KTQEETEKMAHKVIYSLLVSLFGDVKVGEEGKLIVTVDGNVARLDRKNGEVECDDDSLKE 201
KT+EE EK+ KV+Y+L+VSLFGDVKV EEGKL+++VDG+VA LD ++G+VEC++ +LKE
Sbjct: 625 KTEEEMEKVVQKVVYALMVSLFGDVKVAEEGKLVISVDGDVAHLDGRSGDVECENAALKE 684
Query: 202 RVKIAFQRIQSAV 240
R+ AF+RIQ A+
Sbjct: 685 RISTAFRRIQGAL 697
>ref|XP_002323824.2| cleavage and polyadenylation specificity factor family protein
[Populus trichocarpa] gi|550320034|gb|EEF03957.2|
cleavage and polyadenylation specificity factor family
protein [Populus trichocarpa]
Length = 695
Score = 114 bits (285), Expect = 1e-23
Identities = 54/80 (67%), Positives = 70/80 (87%)
Frame = +1
Query: 22 KTQEETEKMAHKVIYSLLVSLFGDVKVGEEGKLIVTVDGNVARLDRKNGEVECDDDSLKE 201
K++EE EK A KVIY+ LVSLFGDVK+GE GKL+++VDGNVA LD+++G+VE +++ LKE
Sbjct: 615 KSEEENEKKAEKVIYAFLVSLFGDVKLGENGKLVISVDGNVAELDKQSGDVESENEGLKE 674
Query: 202 RVKIAFQRIQSAVRPIPLSA 261
RV+ AF+RIQSAVRPIPL A
Sbjct: 675 RVRTAFRRIQSAVRPIPLPA 694
>dbj|BAJ86772.1| predicted protein [Hordeum vulgare subsp. vulgare]
Length = 704
Score = 114 bits (285), Expect = 1e-23
Identities = 55/85 (64%), Positives = 70/85 (82%)
Frame = +1
Query: 7 VAEVEKTQEETEKMAHKVIYSLLVSLFGDVKVGEEGKLIVTVDGNVARLDRKNGEVECDD 186
+ E KT+EETE++ KV+Y+L+VSLFGDVKV EEGKLI+TVDG+ A LD ++G+VEC +
Sbjct: 619 IEEAVKTEEETERVGRKVVYALMVSLFGDVKVAEEGKLIITVDGDAAHLDGRSGDVECAN 678
Query: 187 DSLKERVKIAFQRIQSAVRPIPLSA 261
LKER+K AF+RIQ AVRPI LSA
Sbjct: 679 AGLKERIKTAFRRIQGAVRPILLSA 703
>dbj|BAJ85804.1| predicted protein [Hordeum vulgare subsp. vulgare]
Length = 704
Score = 114 bits (285), Expect = 1e-23
Identities = 55/85 (64%), Positives = 70/85 (82%)
Frame = +1
Query: 7 VAEVEKTQEETEKMAHKVIYSLLVSLFGDVKVGEEGKLIVTVDGNVARLDRKNGEVECDD 186
+ E KT+EETE++ KV+Y+L+VSLFGDVKV EEGKLI+TVDG+ A LD ++G+VEC +
Sbjct: 619 IEEAVKTEEETERVGRKVVYALMVSLFGDVKVAEEGKLIITVDGDAAHLDGRSGDVECAN 678
Query: 187 DSLKERVKIAFQRIQSAVRPIPLSA 261
LKER+K AF+RIQ AVRPI LSA
Sbjct: 679 AGLKERIKTAFRRIQGAVRPILLSA 703
>dbj|BAJ89790.1| predicted protein [Hordeum vulgare subsp. vulgare]
Length = 704
Score = 114 bits (285), Expect = 1e-23
Identities = 55/85 (64%), Positives = 70/85 (82%)
Frame = +1
Query: 7 VAEVEKTQEETEKMAHKVIYSLLVSLFGDVKVGEEGKLIVTVDGNVARLDRKNGEVECDD 186
+ E KT+EETE++ KV+Y+L+VSLFGDVKV EEGKLI+TVDG+ A LD ++G+VEC +
Sbjct: 619 IEEAVKTEEETERVGRKVVYALMVSLFGDVKVAEEGKLIITVDGDAAHLDGRSGDVECAN 678
Query: 187 DSLKERVKIAFQRIQSAVRPIPLSA 261
LKER+K AF+RIQ AVRPI LSA
Sbjct: 679 AGLKERIKTAFRRIQGAVRPILLSA 703
>ref|XP_006300311.1| hypothetical protein CARUB_v10019868mg [Capsella rubella]
gi|482569021|gb|EOA33209.1| hypothetical protein
CARUB_v10019868mg [Capsella rubella]
Length = 725
Score = 113 bits (283), Expect = 2e-23
Identities = 54/80 (67%), Positives = 69/80 (86%)
Frame = +1
Query: 22 KTQEETEKMAHKVIYSLLVSLFGDVKVGEEGKLIVTVDGNVARLDRKNGEVECDDDSLKE 201
K++EE K KVIY+LLVSLFGDVK+GE GKL++ VDGNVA+LD+++GEVE + LKE
Sbjct: 645 KSEEENGKKVEKVIYALLVSLFGDVKLGENGKLVIRVDGNVAQLDKESGEVESEHSGLKE 704
Query: 202 RVKIAFQRIQSAVRPIPLSA 261
RV++AF+RIQSAV+PIPLSA
Sbjct: 705 RVRVAFERIQSAVKPIPLSA 724
>ref|XP_004135522.1| PREDICTED: LOW QUALITY PROTEIN: cleavage and polyadenylation
specificity factor subunit 3-I-like [Cucumis sativus]
Length = 481
Score = 113 bits (283), Expect = 2e-23
Identities = 54/84 (64%), Positives = 71/84 (84%)
Frame = +1
Query: 10 AEVEKTQEETEKMAHKVIYSLLVSLFGDVKVGEEGKLIVTVDGNVARLDRKNGEVECDDD 189
+E KT+EE K A KVI++LLVSLFGDVK+GE GKL++ VDGN+A +D+++GEVE +++
Sbjct: 396 SEAVKTEEENVKKAEKVIHALLVSLFGDVKLGENGKLVINVDGNIAEVDKQSGEVESENE 455
Query: 190 SLKERVKIAFQRIQSAVRPIPLSA 261
+LKERVK AFQRIQ AV PIPLS+
Sbjct: 456 ALKERVKTAFQRIQCAVNPIPLSS 479
>ref|NP_176297.1| cleavage and polyadenylation specificity factor subunit 73-I
[Arabidopsis thaliana] gi|30696512|ref|NP_849835.1|
cleavage and polyadenylation specificity factor subunit
73-I [Arabidopsis thaliana]
gi|79320389|ref|NP_001031215.1| cleavage and
polyadenylation specificity factor subunit 73-I
[Arabidopsis thaliana]
gi|75262219|sp|Q9C952.1|CPSF3_ARATH RecName:
Full=Cleavage and polyadenylation specificity factor
subunit 3-I; AltName: Full=Cleavage and polyadenylation
specificity factor 73 kDa subunit I; Short=AtCPSF73-I;
Short=CPSF 73 kDa subunit I
gi|12323330|gb|AAG51638.1|AC018908_4 putative cleavage
and polyadenylation specificity factor; 72745-70039
[Arabidopsis thaliana] gi|23297661|gb|AAN13003.1|
putative cleavage and polyadenylation specificity factor
[Arabidopsis thaliana] gi|24415578|gb|AAN41458.1|
putative cleavage and polyadenylation specificity factor
73 kDa subunit [Arabidopsis thaliana]
gi|222422865|dbj|BAH19419.1| AT1G61010 [Arabidopsis
thaliana] gi|222423059|dbj|BAH19511.1| AT1G61010
[Arabidopsis thaliana] gi|332195645|gb|AEE33766.1|
cleavage and polyadenylation specificity factor subunit
3-I [Arabidopsis thaliana] gi|332195646|gb|AEE33767.1|
cleavage and polyadenylation specificity factor subunit
3-I [Arabidopsis thaliana] gi|332195647|gb|AEE33768.1|
cleavage and polyadenylation specificity factor subunit
3-I [Arabidopsis thaliana]
Length = 693
Score = 113 bits (283), Expect = 2e-23
Identities = 54/80 (67%), Positives = 69/80 (86%)
Frame = +1
Query: 22 KTQEETEKMAHKVIYSLLVSLFGDVKVGEEGKLIVTVDGNVARLDRKNGEVECDDDSLKE 201
K++EE K KVIY+LLVSLFGDVK+GE GKL++ VDGNVA+LD+++GEVE + LKE
Sbjct: 613 KSEEENGKKVEKVIYALLVSLFGDVKLGENGKLVIRVDGNVAQLDKESGEVESEHSGLKE 672
Query: 202 RVKIAFQRIQSAVRPIPLSA 261
RV++AF+RIQSAV+PIPLSA
Sbjct: 673 RVRVAFERIQSAVKPIPLSA 692
>ref|XP_002886569.1| hypothetical protein ARALYDRAFT_475225 [Arabidopsis lyrata subsp.
lyrata] gi|297332410|gb|EFH62828.1| hypothetical protein
ARALYDRAFT_475225 [Arabidopsis lyrata subsp. lyrata]
Length = 693
Score = 113 bits (283), Expect = 2e-23
Identities = 54/80 (67%), Positives = 69/80 (86%)
Frame = +1
Query: 22 KTQEETEKMAHKVIYSLLVSLFGDVKVGEEGKLIVTVDGNVARLDRKNGEVECDDDSLKE 201
K++EE K KVIY+LLVSLFGDVK+GE GKL++ VDGNVA+LD+++GEVE + LKE
Sbjct: 613 KSEEENGKKVEKVIYALLVSLFGDVKLGENGKLVIRVDGNVAQLDKESGEVESEHSGLKE 672
Query: 202 RVKIAFQRIQSAVRPIPLSA 261
RV++AF+RIQSAV+PIPLSA
Sbjct: 673 RVRVAFERIQSAVKPIPLSA 692
>gb|EOX98110.1| Cleavage and polyadenylation specificity factor 73-I [Theobroma
cacao]
Length = 694
Score = 113 bits (282), Expect = 3e-23
Identities = 55/84 (65%), Positives = 72/84 (85%)
Frame = +1
Query: 10 AEVEKTQEETEKMAHKVIYSLLVSLFGDVKVGEEGKLIVTVDGNVARLDRKNGEVECDDD 189
+E K +EE K A KVI++LLVSLFGDVK+GE GKL+++VDGNVA LD+++G+VE +++
Sbjct: 610 SEAVKMEEENGKKAEKVIHALLVSLFGDVKLGENGKLMISVDGNVAHLDKQSGDVESENE 669
Query: 190 SLKERVKIAFQRIQSAVRPIPLSA 261
LKERVK AF+RIQSAV+PIPLSA
Sbjct: 670 GLKERVKTAFRRIQSAVKPIPLSA 693