BLASTX nr result
ID: Zingiber23_contig00024876
seq
BLASTX 2.2.25 [Feb-01-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= Zingiber23_contig00024876
(214 letters)
Database: ./nr
37,332,560 sequences; 13,225,080,153 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
ref|XP_006826987.1| hypothetical protein AMTR_s00010p00207700 [A... 105 5e-21
ref|XP_002301037.2| hypothetical protein POPTR_0002s09320g [Popu... 101 9e-20
gb|EOY16078.1| TRNA modification GTPase [Theobroma cacao] 100 2e-19
ref|XP_004973401.1| PREDICTED: LOW QUALITY PROTEIN: probable tRN... 100 3e-19
ref|XP_003574461.1| PREDICTED: tRNA modification GTPase MnmE-lik... 99 4e-19
ref|XP_004299612.1| PREDICTED: tRNA modification GTPase MnmE-lik... 98 1e-18
ref|XP_002444316.1| hypothetical protein SORBIDRAFT_07g020060 [S... 98 1e-18
ref|XP_006472646.1| PREDICTED: probable tRNA modification GTPase... 98 1e-18
ref|XP_002889172.1| hypothetical protein ARALYDRAFT_895691 [Arab... 98 1e-18
ref|XP_006390033.1| hypothetical protein EUTSA_v10018349mg [Eutr... 97 2e-18
dbj|BAC98601.1| putative tRNA modification GTPase trmE [Oryza sa... 97 2e-18
ref|XP_002285809.1| PREDICTED: tRNA modification GTPase MnmE [Vi... 97 2e-18
ref|XP_006302085.1| hypothetical protein CARUB_v10020072mg [Caps... 97 3e-18
gb|AFW62152.1| tRNA modification GTPase trmE [Zea mays] 96 4e-18
ref|NP_001149416.1| LOC100283042 [Zea mays] gi|195627080|gb|ACG3... 96 4e-18
gb|AAF17686.1|AC009243_13 F28K19.23 [Arabidopsis thaliana] 96 5e-18
ref|NP_177924.3| putative tRNA modification GTPase [Arabidopsis ... 96 5e-18
ref|XP_006434032.1| hypothetical protein CICLE_v10003846mg [Citr... 96 6e-18
ref|XP_004500668.1| PREDICTED: tRNA modification GTPase MnmE-lik... 95 1e-17
ref|XP_004500604.1| PREDICTED: tRNA modification GTPase MnmE-lik... 95 1e-17
>ref|XP_006826987.1| hypothetical protein AMTR_s00010p00207700 [Amborella trichopoda]
gi|548831416|gb|ERM94224.1| hypothetical protein
AMTR_s00010p00207700 [Amborella trichopoda]
Length = 502
Score = 105 bits (263), Expect = 5e-21
Identities = 51/72 (70%), Positives = 60/72 (83%), Gaps = 1/72 (1%)
Frame = +1
Query: 1 IVRLSGPTAVDVAARVFHPARGRKEGGS-PFLWKPRSHFVEYGFALDRKGNVIDEVLAVP 177
IVRLSG +AV +A RVF PAR +K PF+W+P+SHFVEYG LDR+GN++DEVLAVP
Sbjct: 48 IVRLSGSSAVAIAGRVFTPARKKKNRSKGPFVWEPKSHFVEYGVVLDREGNIVDEVLAVP 107
Query: 178 MLAPRSYTREDV 213
MLAPRSYTREDV
Sbjct: 108 MLAPRSYTREDV 119
>ref|XP_002301037.2| hypothetical protein POPTR_0002s09320g [Populus trichocarpa]
gi|550344627|gb|EEE80310.2| hypothetical protein
POPTR_0002s09320g [Populus trichocarpa]
Length = 550
Score = 101 bits (252), Expect = 9e-20
Identities = 50/71 (70%), Positives = 59/71 (83%)
Frame = +1
Query: 1 IVRLSGPTAVDVAARVFHPARGRKEGGSPFLWKPRSHFVEYGFALDRKGNVIDEVLAVPM 180
IVRLSGP+AV++AARVF P R +K+ G +WKP SH V+YG LD +GNV+DEVLAVPM
Sbjct: 98 IVRLSGPSAVEIAARVFKPMRKKKKKGF-CVWKPTSHVVDYGVVLDHQGNVVDEVLAVPM 156
Query: 181 LAPRSYTREDV 213
LAPRSYTREDV
Sbjct: 157 LAPRSYTREDV 167
>gb|EOY16078.1| TRNA modification GTPase [Theobroma cacao]
Length = 564
Score = 100 bits (249), Expect = 2e-19
Identities = 50/76 (65%), Positives = 58/76 (76%), Gaps = 5/76 (6%)
Frame = +1
Query: 1 IVRLSGPTAVDVAARVFHPARGRKEGGSPF-----LWKPRSHFVEYGFALDRKGNVIDEV 165
IVRLSGPTAVD+A RVF PA+ +K+ F W+P SH VEYG LD +GNV+DEV
Sbjct: 108 IVRLSGPTAVDIAGRVFFPAKKKKKQEKSFDSGSASWRPTSHVVEYGVVLDSRGNVVDEV 167
Query: 166 LAVPMLAPRSYTREDV 213
LAVPMLAP+SYTREDV
Sbjct: 168 LAVPMLAPKSYTREDV 183
>ref|XP_004973401.1| PREDICTED: LOW QUALITY PROTEIN: probable tRNA modification GTPase
mnmE-like [Setaria italica]
Length = 544
Score = 99.8 bits (247), Expect = 3e-19
Identities = 53/71 (74%), Positives = 57/71 (80%)
Frame = +1
Query: 1 IVRLSGPTAVDVAARVFHPARGRKEGGSPFLWKPRSHFVEYGFALDRKGNVIDEVLAVPM 180
IVRLSGP AV VA RVF PAR R+ +P W+PRSHFVEYG ALD G+VIDEVL VPM
Sbjct: 94 IVRLSGPDAVAVAGRVFRPAR-REPAQAP--WRPRSHFVEYGLALDADGSVIDEVLVVPM 150
Query: 181 LAPRSYTREDV 213
LAPRSYTREDV
Sbjct: 151 LAPRSYTREDV 161
>ref|XP_003574461.1| PREDICTED: tRNA modification GTPase MnmE-like [Brachypodium
distachyon]
Length = 543
Score = 99.4 bits (246), Expect = 4e-19
Identities = 52/71 (73%), Positives = 54/71 (76%)
Frame = +1
Query: 1 IVRLSGPTAVDVAARVFHPARGRKEGGSPFLWKPRSHFVEYGFALDRKGNVIDEVLAVPM 180
+VRLSG AV VA RVF PAR E WKPRSHFVEYGFALD G+VIDEVL VPM
Sbjct: 95 VVRLSGADAVAVAGRVFRPARKEPEA-----WKPRSHFVEYGFALDGDGSVIDEVLVVPM 149
Query: 181 LAPRSYTREDV 213
LAPRSYTREDV
Sbjct: 150 LAPRSYTREDV 160
>ref|XP_004299612.1| PREDICTED: tRNA modification GTPase MnmE-like [Fragaria vesca
subsp. vesca]
Length = 563
Score = 98.2 bits (243), Expect = 1e-18
Identities = 49/71 (69%), Positives = 55/71 (77%)
Frame = +1
Query: 1 IVRLSGPTAVDVAARVFHPARGRKEGGSPFLWKPRSHFVEYGFALDRKGNVIDEVLAVPM 180
IVRLSGP+AV V RVF P+R + + SP W+P SH VEYG LD GNV+DEVLAVPM
Sbjct: 112 IVRLSGPSAVAVVGRVFRPSRRKSKSKSP--WRPTSHVVEYGVVLDPNGNVVDEVLAVPM 169
Query: 181 LAPRSYTREDV 213
LAPRSYTREDV
Sbjct: 170 LAPRSYTREDV 180
>ref|XP_002444316.1| hypothetical protein SORBIDRAFT_07g020060 [Sorghum bicolor]
gi|241940666|gb|EES13811.1| hypothetical protein
SORBIDRAFT_07g020060 [Sorghum bicolor]
Length = 548
Score = 98.2 bits (243), Expect = 1e-18
Identities = 52/71 (73%), Positives = 56/71 (78%)
Frame = +1
Query: 1 IVRLSGPTAVDVAARVFHPARGRKEGGSPFLWKPRSHFVEYGFALDRKGNVIDEVLAVPM 180
IVRLSGP AV VA RVF PA G + +P W+PRSHFVEYG ALD G+VIDEVL VPM
Sbjct: 98 IVRLSGPDAVAVADRVFRPA-GARRASAP--WQPRSHFVEYGLALDADGSVIDEVLVVPM 154
Query: 181 LAPRSYTREDV 213
LAPRSYTREDV
Sbjct: 155 LAPRSYTREDV 165
>ref|XP_006472646.1| PREDICTED: probable tRNA modification GTPase MnmE-like isoform X2
[Citrus sinensis]
Length = 564
Score = 97.8 bits (242), Expect = 1e-18
Identities = 49/72 (68%), Positives = 55/72 (76%), Gaps = 1/72 (1%)
Frame = +1
Query: 1 IVRLSGPTAVDVAARVFHPARGRKEGGSPF-LWKPRSHFVEYGFALDRKGNVIDEVLAVP 177
IVRLSGP AVD+ RVF P + +K+ S W+P SH VEYG LDR GNV+DEVLAVP
Sbjct: 111 IVRLSGPMAVDIVGRVFKPVKKKKKKSSGSGSWRPTSHVVEYGVVLDRHGNVVDEVLAVP 170
Query: 178 MLAPRSYTREDV 213
MLAPRSYTREDV
Sbjct: 171 MLAPRSYTREDV 182
>ref|XP_002889172.1| hypothetical protein ARALYDRAFT_895691 [Arabidopsis lyrata subsp.
lyrata] gi|297335013|gb|EFH65431.1| hypothetical protein
ARALYDRAFT_895691 [Arabidopsis lyrata subsp. lyrata]
Length = 560
Score = 97.8 bits (242), Expect = 1e-18
Identities = 50/72 (69%), Positives = 57/72 (79%), Gaps = 1/72 (1%)
Frame = +1
Query: 1 IVRLSGPTAVDVAARVFHPARGRKEGGSPF-LWKPRSHFVEYGFALDRKGNVIDEVLAVP 177
IVRLSGP AV+VA RVF A+ RK+ S W+P+SHFVEYG +D GNV+DEVLAVP
Sbjct: 110 IVRLSGPKAVEVARRVFRSAKKRKKKDSDSDSWQPKSHFVEYGVVVDSHGNVVDEVLAVP 169
Query: 178 MLAPRSYTREDV 213
MLAPRSYTREDV
Sbjct: 170 MLAPRSYTREDV 181
>ref|XP_006390033.1| hypothetical protein EUTSA_v10018349mg [Eutrema salsugineum]
gi|557086467|gb|ESQ27319.1| hypothetical protein
EUTSA_v10018349mg [Eutrema salsugineum]
Length = 564
Score = 97.1 bits (240), Expect = 2e-18
Identities = 50/76 (65%), Positives = 57/76 (75%), Gaps = 5/76 (6%)
Frame = +1
Query: 1 IVRLSGPTAVDVAARVFHPARGRKEGGSP-----FLWKPRSHFVEYGFALDRKGNVIDEV 165
IVRLSGP AV+VA RVF A+ R + S + W+P SHFVEYG +D KGNV+DEV
Sbjct: 109 IVRLSGPKAVEVARRVFRSAKKRMKKTSDCSADSYSWRPTSHFVEYGVVVDSKGNVVDEV 168
Query: 166 LAVPMLAPRSYTREDV 213
LAVPMLAPRSYTREDV
Sbjct: 169 LAVPMLAPRSYTREDV 184
>dbj|BAC98601.1| putative tRNA modification GTPase trmE [Oryza sativa Japonica
Group]
Length = 552
Score = 97.1 bits (240), Expect = 2e-18
Identities = 52/71 (73%), Positives = 53/71 (74%)
Frame = +1
Query: 1 IVRLSGPTAVDVAARVFHPARGRKEGGSPFLWKPRSHFVEYGFALDRKGNVIDEVLAVPM 180
IVRLSGP A VA RVF PAR P W+PRSHFVEYG ALDR G VIDEVL VPM
Sbjct: 104 IVRLSGPDAAAVAGRVFRPAR---RAAPP--WRPRSHFVEYGVALDRDGGVIDEVLVVPM 158
Query: 181 LAPRSYTREDV 213
LAPRSYTREDV
Sbjct: 159 LAPRSYTREDV 169
>ref|XP_002285809.1| PREDICTED: tRNA modification GTPase MnmE [Vitis vinifera]
gi|302141924|emb|CBI19127.3| unnamed protein product
[Vitis vinifera]
Length = 571
Score = 97.1 bits (240), Expect = 2e-18
Identities = 49/74 (66%), Positives = 54/74 (72%), Gaps = 3/74 (4%)
Frame = +1
Query: 1 IVRLSGPTAVDVAARVFHPAR---GRKEGGSPFLWKPRSHFVEYGFALDRKGNVIDEVLA 171
IVRLSGP AV + ARVF PAR G+ G W+P SH VEYG LD GNV+DEVLA
Sbjct: 116 IVRLSGPEAVAIVARVFRPARRNKGKTLGSGSGSWRPTSHVVEYGVVLDHHGNVVDEVLA 175
Query: 172 VPMLAPRSYTREDV 213
+PMLAPRSYTREDV
Sbjct: 176 IPMLAPRSYTREDV 189
>ref|XP_006302085.1| hypothetical protein CARUB_v10020072mg [Capsella rubella]
gi|482570795|gb|EOA34983.1| hypothetical protein
CARUB_v10020072mg [Capsella rubella]
Length = 563
Score = 96.7 bits (239), Expect = 3e-18
Identities = 49/72 (68%), Positives = 55/72 (76%), Gaps = 1/72 (1%)
Frame = +1
Query: 1 IVRLSGPTAVDVAARVFHPAR-GRKEGGSPFLWKPRSHFVEYGFALDRKGNVIDEVLAVP 177
IVRLSGP AV+VA RVF A+ RK+ W+P SHFVEYG +D GNV+DEVLAVP
Sbjct: 109 IVRLSGPNAVEVARRVFRSAKKSRKKDSVSDSWRPTSHFVEYGVVVDSNGNVVDEVLAVP 168
Query: 178 MLAPRSYTREDV 213
MLAPRSYTREDV
Sbjct: 169 MLAPRSYTREDV 180
>gb|AFW62152.1| tRNA modification GTPase trmE [Zea mays]
Length = 545
Score = 96.3 bits (238), Expect = 4e-18
Identities = 50/71 (70%), Positives = 56/71 (78%)
Frame = +1
Query: 1 IVRLSGPTAVDVAARVFHPARGRKEGGSPFLWKPRSHFVEYGFALDRKGNVIDEVLAVPM 180
IVR+SGP AV VA RVF PA G + +P W+PRSHFVEYG ALD G+VIDEVL VPM
Sbjct: 95 IVRISGPDAVAVADRVFRPA-GTRRASTP--WQPRSHFVEYGLALDADGSVIDEVLVVPM 151
Query: 181 LAPRSYTREDV 213
L+PRSYTREDV
Sbjct: 152 LSPRSYTREDV 162
>ref|NP_001149416.1| LOC100283042 [Zea mays] gi|195627080|gb|ACG35370.1| tRNA
modification GTPase trmE [Zea mays]
Length = 546
Score = 96.3 bits (238), Expect = 4e-18
Identities = 50/71 (70%), Positives = 56/71 (78%)
Frame = +1
Query: 1 IVRLSGPTAVDVAARVFHPARGRKEGGSPFLWKPRSHFVEYGFALDRKGNVIDEVLAVPM 180
IVR+SGP AV VA RVF PA G + +P W+PRSHFVEYG ALD G+VIDEVL VPM
Sbjct: 96 IVRISGPDAVAVADRVFRPA-GTRRASTP--WQPRSHFVEYGLALDADGSVIDEVLVVPM 152
Query: 181 LAPRSYTREDV 213
L+PRSYTREDV
Sbjct: 153 LSPRSYTREDV 163
>gb|AAF17686.1|AC009243_13 F28K19.23 [Arabidopsis thaliana]
Length = 613
Score = 95.9 bits (237), Expect = 5e-18
Identities = 49/72 (68%), Positives = 56/72 (77%), Gaps = 1/72 (1%)
Frame = +1
Query: 1 IVRLSGPTAVDVAARVFHPARGRKEGGSPF-LWKPRSHFVEYGFALDRKGNVIDEVLAVP 177
IVRLSGP AV+VA RVF A+ K+ S W+P+SHFVEYG +D GNV+DEVLAVP
Sbjct: 146 IVRLSGPKAVEVARRVFRSAKKTKKKESDSDTWRPKSHFVEYGAVVDSNGNVVDEVLAVP 205
Query: 178 MLAPRSYTREDV 213
MLAPRSYTREDV
Sbjct: 206 MLAPRSYTREDV 217
>ref|NP_177924.3| putative tRNA modification GTPase [Arabidopsis thaliana]
gi|51536472|gb|AAU05474.1| At1g78010 [Arabidopsis
thaliana] gi|52421301|gb|AAU45220.1| At1g78010
[Arabidopsis thaliana] gi|332197936|gb|AEE36057.1|
putative tRNA modification GTPase [Arabidopsis thaliana]
Length = 560
Score = 95.9 bits (237), Expect = 5e-18
Identities = 49/72 (68%), Positives = 56/72 (77%), Gaps = 1/72 (1%)
Frame = +1
Query: 1 IVRLSGPTAVDVAARVFHPARGRKEGGSPF-LWKPRSHFVEYGFALDRKGNVIDEVLAVP 177
IVRLSGP AV+VA RVF A+ K+ S W+P+SHFVEYG +D GNV+DEVLAVP
Sbjct: 110 IVRLSGPKAVEVARRVFRSAKKTKKKESDSDTWRPKSHFVEYGAVVDSNGNVVDEVLAVP 169
Query: 178 MLAPRSYTREDV 213
MLAPRSYTREDV
Sbjct: 170 MLAPRSYTREDV 181
>ref|XP_006434032.1| hypothetical protein CICLE_v10003846mg [Citrus clementina]
gi|557536154|gb|ESR47272.1| hypothetical protein
CICLE_v10003846mg [Citrus clementina]
Length = 564
Score = 95.5 bits (236), Expect = 6e-18
Identities = 48/72 (66%), Positives = 55/72 (76%), Gaps = 1/72 (1%)
Frame = +1
Query: 1 IVRLSGPTAVDVAARVFHPARGRKEGGSPFL-WKPRSHFVEYGFALDRKGNVIDEVLAVP 177
IVRLSGP AVD+ RVF P + +K+ S + W+P SH VEYG LDR G V+DEVLAVP
Sbjct: 111 IVRLSGPMAVDIVGRVFKPVKKKKKKSSGSVSWRPTSHVVEYGVVLDRHGIVVDEVLAVP 170
Query: 178 MLAPRSYTREDV 213
MLAPRSYTREDV
Sbjct: 171 MLAPRSYTREDV 182
>ref|XP_004500668.1| PREDICTED: tRNA modification GTPase MnmE-like [Cicer arietinum]
Length = 188
Score = 94.7 bits (234), Expect = 1e-17
Identities = 48/71 (67%), Positives = 53/71 (74%)
Frame = +1
Query: 1 IVRLSGPTAVDVAARVFHPARGRKEGGSPFLWKPRSHFVEYGFALDRKGNVIDEVLAVPM 180
IVRLSGP+AV +A RVF PA+ +W+P SH VEYG LD GNVIDEVLAVPM
Sbjct: 99 IVRLSGPSAVSIACRVFRPAKN--------MWQPTSHVVEYGVVLDSDGNVIDEVLAVPM 150
Query: 181 LAPRSYTREDV 213
LAPRSYTREDV
Sbjct: 151 LAPRSYTREDV 161
>ref|XP_004500604.1| PREDICTED: tRNA modification GTPase MnmE-like [Cicer arietinum]
Length = 546
Score = 94.7 bits (234), Expect = 1e-17
Identities = 48/71 (67%), Positives = 53/71 (74%)
Frame = +1
Query: 1 IVRLSGPTAVDVAARVFHPARGRKEGGSPFLWKPRSHFVEYGFALDRKGNVIDEVLAVPM 180
IVRLSGP+AV +A RVF PA+ +W+P SH VEYG LD GNVIDEVLAVPM
Sbjct: 99 IVRLSGPSAVSIACRVFRPAKN--------MWQPTSHVVEYGVVLDSDGNVIDEVLAVPM 150
Query: 181 LAPRSYTREDV 213
LAPRSYTREDV
Sbjct: 151 LAPRSYTREDV 161